Multiple sequence alignment - TraesCS4A01G029100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G029100 chr4A 100.000 7066 0 0 1 7066 21221349 21214284 0.000000e+00 13049.0
1 TraesCS4A01G029100 chr4A 80.480 333 36 12 5510 5839 522975476 522975782 1.980000e-55 228.0
2 TraesCS4A01G029100 chr4A 74.659 367 64 21 1294 1651 665628200 665627854 1.240000e-27 135.0
3 TraesCS4A01G029100 chr4D 88.284 5770 310 163 71 5665 446136533 446142111 0.000000e+00 6573.0
4 TraesCS4A01G029100 chr4D 88.595 1438 85 48 5702 7065 446142178 446143610 0.000000e+00 1674.0
5 TraesCS4A01G029100 chr4D 86.381 257 32 2 5583 5839 439127302 439127555 1.940000e-70 278.0
6 TraesCS4A01G029100 chr4D 100.000 30 0 0 5510 5539 439127249 439127278 1.000000e-03 56.5
7 TraesCS4A01G029100 chr4B 86.336 3886 218 120 68 3811 558043380 558047094 0.000000e+00 3945.0
8 TraesCS4A01G029100 chr4B 91.300 2023 95 46 4309 6286 558047701 558049687 0.000000e+00 2686.0
9 TraesCS4A01G029100 chr4B 90.173 519 31 13 3805 4321 558047139 558047639 0.000000e+00 658.0
10 TraesCS4A01G029100 chr4B 89.700 466 30 12 6284 6735 558049737 558050198 4.750000e-161 579.0
11 TraesCS4A01G029100 chr4B 96.154 286 11 0 6780 7065 558050198 558050483 1.070000e-127 468.0
12 TraesCS4A01G029100 chr4B 82.166 157 28 0 1939 2095 535047262 535047418 1.240000e-27 135.0
13 TraesCS4A01G029100 chr1B 84.239 552 83 3 5270 5817 213595236 213595787 1.040000e-147 534.0
14 TraesCS4A01G029100 chr1D 84.153 549 85 2 5270 5817 138199225 138198678 1.350000e-146 531.0
15 TraesCS4A01G029100 chr1A 82.971 552 88 5 5270 5817 153579809 153579260 1.770000e-135 494.0
16 TraesCS4A01G029100 chrUn 83.962 424 54 9 5424 5838 27575676 27575258 1.850000e-105 394.0
17 TraesCS4A01G029100 chr2B 84.170 259 38 2 5581 5839 23319429 23319174 1.520000e-61 248.0
18 TraesCS4A01G029100 chr2B 81.140 228 36 7 1441 1664 731890691 731890915 7.280000e-40 176.0
19 TraesCS4A01G029100 chr2B 92.308 52 4 0 5510 5561 23319481 23319430 2.730000e-09 75.0
20 TraesCS4A01G029100 chr5D 80.627 351 35 16 6637 6955 432930219 432929870 2.550000e-59 241.0
21 TraesCS4A01G029100 chr5D 81.509 265 39 1 5327 5591 460240914 460241168 7.180000e-50 209.0
22 TraesCS4A01G029100 chr5D 80.000 265 43 1 5327 5591 9405589 9405843 3.370000e-43 187.0
23 TraesCS4A01G029100 chr5D 78.621 145 22 3 5620 5764 9405841 9405976 3.510000e-13 87.9
24 TraesCS4A01G029100 chr6D 85.165 182 26 1 1951 2132 381524778 381524598 1.210000e-42 185.0
25 TraesCS4A01G029100 chr7A 81.116 233 41 2 5607 5839 158303939 158304168 4.350000e-42 183.0
26 TraesCS4A01G029100 chr7A 78.605 215 38 6 1441 1651 53907210 53907420 1.240000e-27 135.0
27 TraesCS4A01G029100 chr7A 90.385 52 5 0 5510 5561 158303509 158303560 1.270000e-07 69.4
28 TraesCS4A01G029100 chr6A 84.615 182 27 1 1951 2132 522743357 522743177 5.630000e-41 180.0
29 TraesCS4A01G029100 chr2A 80.973 226 36 6 1443 1664 734887682 734887904 9.420000e-39 172.0
30 TraesCS4A01G029100 chr2A 75.648 193 39 7 1112 1302 734887093 734887279 9.760000e-14 89.8
31 TraesCS4A01G029100 chr3D 80.252 238 38 9 1115 1349 397213427 397213196 3.390000e-38 171.0
32 TraesCS4A01G029100 chr3B 80.252 238 38 9 1115 1349 523156901 523156670 3.390000e-38 171.0
33 TraesCS4A01G029100 chr3A 80.335 239 36 11 1115 1349 516806112 516805881 3.390000e-38 171.0
34 TraesCS4A01G029100 chr5B 91.200 125 10 1 6635 6758 526256060 526255936 1.220000e-37 169.0
35 TraesCS4A01G029100 chr5B 83.636 110 17 1 6760 6869 526255908 526255800 1.250000e-17 102.0
36 TraesCS4A01G029100 chr2D 81.106 217 35 5 1441 1654 601597298 601597511 1.220000e-37 169.0
37 TraesCS4A01G029100 chr2D 75.916 191 35 10 1112 1298 601596671 601596854 3.510000e-13 87.9
38 TraesCS4A01G029100 chr7D 79.535 215 36 6 1441 1651 51429274 51429484 5.710000e-31 147.0
39 TraesCS4A01G029100 chr6B 81.319 182 33 1 1951 2132 570140291 570140111 5.710000e-31 147.0
40 TraesCS4A01G029100 chr7B 79.518 166 32 2 1949 2113 59281782 59281618 4.480000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G029100 chr4A 21214284 21221349 7065 True 13049.0 13049 100.0000 1 7066 1 chr4A.!!$R1 7065
1 TraesCS4A01G029100 chr4D 446136533 446143610 7077 False 4123.5 6573 88.4395 71 7065 2 chr4D.!!$F2 6994
2 TraesCS4A01G029100 chr4B 558043380 558050483 7103 False 1667.2 3945 90.7326 68 7065 5 chr4B.!!$F2 6997
3 TraesCS4A01G029100 chr1B 213595236 213595787 551 False 534.0 534 84.2390 5270 5817 1 chr1B.!!$F1 547
4 TraesCS4A01G029100 chr1D 138198678 138199225 547 True 531.0 531 84.1530 5270 5817 1 chr1D.!!$R1 547
5 TraesCS4A01G029100 chr1A 153579260 153579809 549 True 494.0 494 82.9710 5270 5817 1 chr1A.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 949 0.251354 GCAGACCATCCAGAGCAAGA 59.749 55.0 0.00 0.00 0.00 3.02 F
1769 1870 0.037590 TGTGGGTCAAGCCACATACC 59.962 55.0 25.82 4.65 41.25 2.73 F
3252 3502 0.039472 TAGTACCGCACCCTGTACCA 59.961 55.0 0.00 0.00 38.45 3.25 F
4122 4447 0.026674 CGCTGCATTATGGTGTGACG 59.973 55.0 0.00 0.00 0.00 4.35 F
4717 5143 0.388520 CGACTGAATGACTGACGCCA 60.389 55.0 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2538 2743 0.030235 TCGTGTCGTGTTCTGTCCTG 59.970 55.0 0.0 0.00 0.00 3.86 R
3765 4027 0.029567 TTGGTTTGTGTAAAGGCGCG 59.970 50.0 0.0 0.00 0.00 6.86 R
4772 5198 0.307760 GCGTGAACTGGAGGTTTGTG 59.692 55.0 0.0 0.00 38.41 3.33 R
5444 5887 0.396695 TGGTCCATCCTCCGGTAGAC 60.397 60.0 0.0 0.61 37.07 2.59 R
6544 7155 0.321298 GTTGCCCTTCGCTGGTTCTA 60.321 55.0 0.0 0.00 38.78 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.874895 ACTAACACTTTCGCTAATTTCCC 57.125 39.130 0.00 0.00 0.00 3.97
24 25 3.824414 AACACTTTCGCTAATTTCCCG 57.176 42.857 0.00 0.00 0.00 5.14
25 26 1.467342 ACACTTTCGCTAATTTCCCGC 59.533 47.619 0.00 0.00 0.00 6.13
26 27 1.737793 CACTTTCGCTAATTTCCCGCT 59.262 47.619 0.00 0.00 0.00 5.52
27 28 1.737793 ACTTTCGCTAATTTCCCGCTG 59.262 47.619 0.00 0.00 0.00 5.18
28 29 1.737793 CTTTCGCTAATTTCCCGCTGT 59.262 47.619 0.00 0.00 0.00 4.40
29 30 1.083489 TTCGCTAATTTCCCGCTGTG 58.917 50.000 0.00 0.00 0.00 3.66
30 31 0.742990 TCGCTAATTTCCCGCTGTGG 60.743 55.000 0.00 0.00 37.55 4.17
41 42 1.760192 CCGCTGTGGGTAGTACTACT 58.240 55.000 27.71 0.00 36.36 2.57
42 43 1.674962 CCGCTGTGGGTAGTACTACTC 59.325 57.143 27.71 25.80 37.07 2.59
43 44 2.641305 CGCTGTGGGTAGTACTACTCT 58.359 52.381 28.71 0.00 37.43 3.24
44 45 3.015327 CGCTGTGGGTAGTACTACTCTT 58.985 50.000 28.71 0.00 37.43 2.85
45 46 3.442977 CGCTGTGGGTAGTACTACTCTTT 59.557 47.826 28.71 0.00 37.43 2.52
46 47 4.082354 CGCTGTGGGTAGTACTACTCTTTT 60.082 45.833 28.71 0.00 37.43 2.27
47 48 5.566230 CGCTGTGGGTAGTACTACTCTTTTT 60.566 44.000 28.71 0.00 37.43 1.94
109 115 0.319083 ACCGAACACGTGCAGGATTA 59.681 50.000 25.01 0.00 0.00 1.75
124 130 2.292794 GATTACCAGCTCCGTGGCGA 62.293 60.000 0.00 0.00 41.90 5.54
147 153 1.255882 TGCATCCATTTTTGAGGCGT 58.744 45.000 0.00 0.00 42.12 5.68
197 203 3.326006 TCTTGTCTCAGTGGAATCTGCTT 59.674 43.478 0.00 0.00 35.63 3.91
210 216 5.580297 TGGAATCTGCTTTGTGTTTTTGTTC 59.420 36.000 0.00 0.00 0.00 3.18
222 228 5.296780 TGTGTTTTTGTTCTTGTTTTGGCAA 59.703 32.000 0.00 0.00 0.00 4.52
290 298 0.718343 GACACACGAGATGCTGCTTC 59.282 55.000 7.40 7.40 0.00 3.86
301 309 2.281761 CTGCTTCGCCAACCACCT 60.282 61.111 0.00 0.00 0.00 4.00
340 359 4.945246 TCGATATGCAGAAACTAGGGAAC 58.055 43.478 0.00 0.00 0.00 3.62
377 396 1.646624 TACCTGCACGTACGATCGCA 61.647 55.000 24.41 23.51 0.00 5.10
399 418 4.841443 CCGTAGGCAGTATACATACACA 57.159 45.455 5.50 0.00 46.14 3.72
400 419 4.543692 CCGTAGGCAGTATACATACACAC 58.456 47.826 5.50 0.00 46.14 3.82
413 432 3.738791 ACATACACACACACACATACACG 59.261 43.478 0.00 0.00 0.00 4.49
425 444 5.231147 ACACACATACACGAAAATTGCAAAC 59.769 36.000 1.71 0.00 0.00 2.93
461 480 0.387622 ACATGCGCTTACGTACGTGT 60.388 50.000 30.25 14.13 42.83 4.49
470 489 2.488639 TACGTACGTGTTTGTCAGCA 57.511 45.000 30.25 3.44 0.00 4.41
535 554 3.417224 CCGATGCCGATGCCGATG 61.417 66.667 0.00 0.00 38.22 3.84
536 555 3.417224 CGATGCCGATGCCGATGG 61.417 66.667 0.00 0.00 38.22 3.51
537 556 2.031012 GATGCCGATGCCGATGGA 59.969 61.111 0.00 0.00 38.22 3.41
538 557 1.376424 GATGCCGATGCCGATGGAT 60.376 57.895 0.00 0.00 38.22 3.41
539 558 1.364626 GATGCCGATGCCGATGGATC 61.365 60.000 0.00 0.00 38.22 3.36
540 559 2.031012 GCCGATGCCGATGGATCA 59.969 61.111 0.00 0.00 38.22 2.92
543 565 0.800631 CCGATGCCGATGGATCAATG 59.199 55.000 0.00 0.00 38.22 2.82
546 568 4.162592 GCCGATGGATCAATGGCA 57.837 55.556 15.01 0.00 45.06 4.92
578 600 3.696426 GATCGCACGGCAGATCGC 61.696 66.667 0.00 1.55 41.28 4.58
655 688 8.301002 CAATAACCCTATACTCTACTGAAGCTC 58.699 40.741 0.00 0.00 0.00 4.09
838 897 1.378119 GACACCAAATCCGACCCCC 60.378 63.158 0.00 0.00 0.00 5.40
889 948 0.747283 GGCAGACCATCCAGAGCAAG 60.747 60.000 0.00 0.00 35.26 4.01
890 949 0.251354 GCAGACCATCCAGAGCAAGA 59.749 55.000 0.00 0.00 0.00 3.02
891 950 1.743091 GCAGACCATCCAGAGCAAGAG 60.743 57.143 0.00 0.00 0.00 2.85
892 951 0.540923 AGACCATCCAGAGCAAGAGC 59.459 55.000 0.00 0.00 42.56 4.09
893 952 0.251354 GACCATCCAGAGCAAGAGCA 59.749 55.000 0.00 0.00 45.49 4.26
894 953 0.694771 ACCATCCAGAGCAAGAGCAA 59.305 50.000 0.00 0.00 45.49 3.91
895 954 1.339824 ACCATCCAGAGCAAGAGCAAG 60.340 52.381 0.00 0.00 45.49 4.01
896 955 0.733729 CATCCAGAGCAAGAGCAAGC 59.266 55.000 0.00 0.00 45.49 4.01
897 956 0.743701 ATCCAGAGCAAGAGCAAGCG 60.744 55.000 0.00 0.00 45.49 4.68
898 957 2.479650 CAGAGCAAGAGCAAGCGC 59.520 61.111 0.00 0.00 45.49 5.92
899 958 2.031616 AGAGCAAGAGCAAGCGCA 59.968 55.556 11.47 0.00 45.49 6.09
900 959 1.598962 AGAGCAAGAGCAAGCGCAA 60.599 52.632 11.47 0.00 45.49 4.85
925 989 3.617288 GCAAGTGGTGAAATCCATTTCCC 60.617 47.826 9.12 9.86 44.16 3.97
960 1032 0.306533 GTTAGAGAGAGCGAGCGAGG 59.693 60.000 0.00 0.00 0.00 4.63
1212 1284 1.469423 CGCTACTTCTTCCCGTTCCTC 60.469 57.143 0.00 0.00 0.00 3.71
1354 1426 4.492160 TCGGCCTCTGTAAGCGCG 62.492 66.667 0.00 0.00 0.00 6.86
1372 1444 2.426522 GCGTCACACATGGCCATATAT 58.573 47.619 20.30 3.95 0.00 0.86
1389 1461 5.449041 CCATATATATGTTGCCATTGCCGAC 60.449 44.000 19.11 0.00 32.08 4.79
1391 1463 1.093972 TATGTTGCCATTGCCGACTG 58.906 50.000 0.00 0.00 36.33 3.51
1392 1464 0.895100 ATGTTGCCATTGCCGACTGT 60.895 50.000 0.00 0.00 36.33 3.55
1393 1465 0.250510 TGTTGCCATTGCCGACTGTA 60.251 50.000 0.00 0.00 36.33 2.74
1395 1467 1.093972 TTGCCATTGCCGACTGTATG 58.906 50.000 0.00 0.00 36.33 2.39
1396 1468 0.251634 TGCCATTGCCGACTGTATGA 59.748 50.000 0.00 0.00 36.33 2.15
1400 1472 0.833287 ATTGCCGACTGTATGAGCCT 59.167 50.000 0.00 0.00 0.00 4.58
1401 1473 0.613260 TTGCCGACTGTATGAGCCTT 59.387 50.000 0.00 0.00 0.00 4.35
1403 1475 0.872021 GCCGACTGTATGAGCCTTCG 60.872 60.000 0.00 0.00 0.00 3.79
1404 1476 0.456221 CCGACTGTATGAGCCTTCGT 59.544 55.000 0.00 0.00 0.00 3.85
1405 1477 1.550065 CGACTGTATGAGCCTTCGTG 58.450 55.000 0.00 0.00 0.00 4.35
1406 1478 1.281899 GACTGTATGAGCCTTCGTGC 58.718 55.000 0.00 0.00 0.00 5.34
1412 1484 1.548357 ATGAGCCTTCGTGCCTCTGT 61.548 55.000 0.00 0.00 0.00 3.41
1425 1526 2.306341 CCTCTGTGGCTCACTGTATG 57.694 55.000 6.83 3.03 35.37 2.39
1662 1763 1.807226 CATCCTCAGGCACGTCGTA 59.193 57.895 0.00 0.00 0.00 3.43
1663 1764 0.525668 CATCCTCAGGCACGTCGTAC 60.526 60.000 0.00 0.00 0.00 3.67
1692 1793 4.606071 GCTTCGTGCTCACTCCAT 57.394 55.556 0.00 0.00 38.95 3.41
1715 1816 9.801873 CCATTTAACTAATCAAACCATCGATTT 57.198 29.630 0.00 0.00 33.90 2.17
1735 1836 4.837093 TTCGATTAGGGAAATCACACCT 57.163 40.909 0.00 0.00 43.68 4.00
1736 1837 5.943349 TTCGATTAGGGAAATCACACCTA 57.057 39.130 0.00 0.00 43.68 3.08
1757 1858 2.829120 ACTAAGCTCTCTCTTGTGGGTC 59.171 50.000 0.00 0.00 0.00 4.46
1769 1870 0.037590 TGTGGGTCAAGCCACATACC 59.962 55.000 25.82 4.65 41.25 2.73
1773 1874 1.141053 GGGTCAAGCCACATACCTAGG 59.859 57.143 7.41 7.41 39.65 3.02
1775 1876 3.036091 GGTCAAGCCACATACCTAGGTA 58.964 50.000 23.82 23.82 37.17 3.08
1778 1879 4.161754 GTCAAGCCACATACCTAGGTAGTT 59.838 45.833 25.40 12.76 33.77 2.24
1779 1880 4.161565 TCAAGCCACATACCTAGGTAGTTG 59.838 45.833 25.40 21.14 33.77 3.16
1882 1998 0.831966 AGCTCTAGATGCAGCAAGCT 59.168 50.000 17.40 17.40 45.94 3.74
1884 2000 1.331138 GCTCTAGATGCAGCAAGCTTG 59.669 52.381 22.44 22.44 45.94 4.01
1885 2001 1.941294 CTCTAGATGCAGCAAGCTTGG 59.059 52.381 27.10 13.03 45.94 3.61
1886 2002 1.280133 TCTAGATGCAGCAAGCTTGGT 59.720 47.619 24.96 24.96 45.94 3.67
1887 2003 2.501316 TCTAGATGCAGCAAGCTTGGTA 59.499 45.455 29.24 16.59 45.94 3.25
1888 2004 1.457346 AGATGCAGCAAGCTTGGTAC 58.543 50.000 29.24 24.29 45.94 3.34
1890 2006 2.237143 AGATGCAGCAAGCTTGGTACTA 59.763 45.455 29.24 18.50 45.94 1.82
1891 2007 2.787473 TGCAGCAAGCTTGGTACTAT 57.213 45.000 29.24 0.00 45.94 2.12
1892 2008 2.358957 TGCAGCAAGCTTGGTACTATG 58.641 47.619 29.24 17.96 45.94 2.23
1893 2009 1.672881 GCAGCAAGCTTGGTACTATGG 59.327 52.381 29.24 17.28 41.15 2.74
1923 2039 3.676646 GGTTTAGGTGTAACTGCTACGTG 59.323 47.826 0.00 0.00 36.74 4.49
1924 2040 2.642139 TAGGTGTAACTGCTACGTGC 57.358 50.000 0.00 0.00 43.25 5.34
1959 2116 3.665675 GACTACGTGCAGGCTGGGG 62.666 68.421 17.64 0.40 0.00 4.96
2191 2367 7.659799 GCATCTTGTTACCCATACATACATACA 59.340 37.037 0.00 0.00 0.00 2.29
2192 2368 9.725019 CATCTTGTTACCCATACATACATACAT 57.275 33.333 0.00 0.00 0.00 2.29
2195 2371 9.990360 CTTGTTACCCATACATACATACATACA 57.010 33.333 0.00 0.00 0.00 2.29
2245 2431 4.980339 AGCTAGTAGGTACCTAGGACTC 57.020 50.000 22.37 9.96 0.00 3.36
2258 2444 1.225704 GGACTCCCAAGAGCCCATG 59.774 63.158 0.00 0.00 42.08 3.66
2264 2450 1.152881 CCAAGAGCCCATGGTAGCC 60.153 63.158 11.73 2.51 31.84 3.93
2275 2461 1.767759 ATGGTAGCCATGCACCTTTC 58.232 50.000 0.00 0.00 43.39 2.62
2291 2479 2.791004 CCTTTCAGTGCTTTTTCTTGCG 59.209 45.455 0.00 0.00 0.00 4.85
2308 2496 4.566759 TCTTGCGTATTGTGATCAAGCTAC 59.433 41.667 0.00 0.00 36.97 3.58
2359 2547 2.163815 GCGTATGCCTGTCCGTAGATAT 59.836 50.000 0.00 0.00 33.98 1.63
2360 2548 3.376234 GCGTATGCCTGTCCGTAGATATA 59.624 47.826 0.00 0.00 33.98 0.86
2361 2549 4.036498 GCGTATGCCTGTCCGTAGATATAT 59.964 45.833 0.00 0.00 33.98 0.86
2362 2550 5.237996 GCGTATGCCTGTCCGTAGATATATA 59.762 44.000 0.00 0.00 33.98 0.86
2429 2631 2.202222 GCATGCGCGTGACACTTC 60.202 61.111 32.94 10.32 0.00 3.01
2466 2668 1.078143 GCACAAGCCTCTGGGGTAG 60.078 63.158 0.00 0.00 43.29 3.18
2467 2669 1.604378 CACAAGCCTCTGGGGTAGG 59.396 63.158 0.00 0.00 43.29 3.18
2472 2677 3.483869 CCTCTGGGGTAGGCAGCC 61.484 72.222 1.84 1.84 41.95 4.85
2534 2739 1.003718 CCGGGAAGGACAGGAACAC 60.004 63.158 0.00 0.00 45.00 3.32
2535 2740 1.374252 CGGGAAGGACAGGAACACG 60.374 63.158 0.00 0.00 0.00 4.49
2536 2741 1.812686 CGGGAAGGACAGGAACACGA 61.813 60.000 0.00 0.00 0.00 4.35
2537 2742 0.395312 GGGAAGGACAGGAACACGAA 59.605 55.000 0.00 0.00 0.00 3.85
2538 2743 1.509703 GGAAGGACAGGAACACGAAC 58.490 55.000 0.00 0.00 0.00 3.95
2539 2744 1.202604 GGAAGGACAGGAACACGAACA 60.203 52.381 0.00 0.00 0.00 3.18
2540 2745 2.135933 GAAGGACAGGAACACGAACAG 58.864 52.381 0.00 0.00 0.00 3.16
2541 2746 0.393077 AGGACAGGAACACGAACAGG 59.607 55.000 0.00 0.00 0.00 4.00
2542 2747 0.391597 GGACAGGAACACGAACAGGA 59.608 55.000 0.00 0.00 0.00 3.86
2543 2748 1.499049 GACAGGAACACGAACAGGAC 58.501 55.000 0.00 0.00 0.00 3.85
2544 2749 0.828022 ACAGGAACACGAACAGGACA 59.172 50.000 0.00 0.00 0.00 4.02
2545 2750 1.202533 ACAGGAACACGAACAGGACAG 60.203 52.381 0.00 0.00 0.00 3.51
2546 2751 1.068588 CAGGAACACGAACAGGACAGA 59.931 52.381 0.00 0.00 0.00 3.41
2591 2796 4.609018 CCTCTACGGCCGGCCATG 62.609 72.222 42.78 30.38 35.37 3.66
2609 2820 0.250424 TGCCGATGCCTATGTCCATG 60.250 55.000 0.00 0.00 36.33 3.66
2638 2849 2.579201 GCTTGGTCCAGCTCGCTA 59.421 61.111 6.17 0.00 36.79 4.26
2738 2958 6.035650 CCACTGTTAATAGTCCGTGTATGTTG 59.964 42.308 1.29 0.00 0.00 3.33
2769 2989 2.302445 TCAATTGGTTGGATGGCTTTGG 59.698 45.455 5.42 0.00 35.99 3.28
2771 2991 1.047002 TTGGTTGGATGGCTTTGGTG 58.953 50.000 0.00 0.00 0.00 4.17
2869 3089 6.572167 AGTCAAGTCTACCAGTAACACTAC 57.428 41.667 0.00 0.00 0.00 2.73
2872 3092 7.941238 AGTCAAGTCTACCAGTAACACTACTAA 59.059 37.037 0.00 0.00 36.14 2.24
2873 3093 8.571336 GTCAAGTCTACCAGTAACACTACTAAA 58.429 37.037 0.00 0.00 36.14 1.85
2874 3094 9.305555 TCAAGTCTACCAGTAACACTACTAAAT 57.694 33.333 0.00 0.00 36.14 1.40
2875 3095 9.924650 CAAGTCTACCAGTAACACTACTAAATT 57.075 33.333 0.00 0.00 36.14 1.82
2966 3188 8.164153 CGATTGCCTTTTCATTTTTAATCACAG 58.836 33.333 0.00 0.00 0.00 3.66
3006 3242 0.676736 AATCCCGATTCGCCTCTCTC 59.323 55.000 0.00 0.00 0.00 3.20
3007 3243 0.178975 ATCCCGATTCGCCTCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
3011 3247 0.239879 CGATTCGCCTCTCTCTAGCC 59.760 60.000 0.00 0.00 0.00 3.93
3017 3253 1.747552 CGCCTCTCTCTAGCCAGTGTA 60.748 57.143 0.00 0.00 0.00 2.90
3038 3278 1.823828 CAGTAGTAGTAAGTGGCGCG 58.176 55.000 0.00 0.00 0.00 6.86
3048 3288 0.179124 AAGTGGCGCGAGAATCTCTC 60.179 55.000 12.10 0.00 40.06 3.20
3049 3289 1.590259 GTGGCGCGAGAATCTCTCC 60.590 63.158 12.10 7.30 40.34 3.71
3050 3290 1.754621 TGGCGCGAGAATCTCTCCT 60.755 57.895 12.10 0.00 40.34 3.69
3051 3291 1.007849 GGCGCGAGAATCTCTCCTC 60.008 63.158 12.10 0.00 40.34 3.71
3052 3292 1.452145 GGCGCGAGAATCTCTCCTCT 61.452 60.000 12.10 0.00 40.34 3.69
3108 3353 2.640184 GGTGCATAAACTAGGACCACC 58.360 52.381 0.00 0.00 44.61 4.61
3123 3368 2.294791 GACCACCAGAGAATCGATCGAT 59.705 50.000 24.60 24.60 42.67 3.59
3124 3369 2.294791 ACCACCAGAGAATCGATCGATC 59.705 50.000 29.48 21.37 42.67 3.69
3139 3384 0.610174 CGATCGACCCATCCATCCAT 59.390 55.000 10.26 0.00 0.00 3.41
3140 3385 1.404717 CGATCGACCCATCCATCCATC 60.405 57.143 10.26 0.00 0.00 3.51
3141 3386 0.987294 ATCGACCCATCCATCCATCC 59.013 55.000 0.00 0.00 0.00 3.51
3181 3431 1.344114 TCATTGGGCCTTTTCTTGCAC 59.656 47.619 4.53 0.00 0.00 4.57
3209 3459 3.380637 ACTCCATTACTGTACTACCAGCG 59.619 47.826 0.00 0.00 35.83 5.18
3251 3501 0.457443 GTAGTACCGCACCCTGTACC 59.543 60.000 0.00 0.00 38.45 3.34
3252 3502 0.039472 TAGTACCGCACCCTGTACCA 59.961 55.000 0.00 0.00 38.45 3.25
3263 3518 1.298413 CTGTACCAGGATCGCGACG 60.298 63.158 12.93 0.00 0.00 5.12
3282 3537 4.363990 CACAGACGCTGCCTCGGT 62.364 66.667 6.74 0.00 34.37 4.69
3283 3538 4.057428 ACAGACGCTGCCTCGGTC 62.057 66.667 6.74 0.00 34.37 4.79
3284 3539 4.803426 CAGACGCTGCCTCGGTCC 62.803 72.222 0.00 0.00 0.00 4.46
3286 3541 4.148825 GACGCTGCCTCGGTCCAT 62.149 66.667 0.00 0.00 0.00 3.41
3317 3572 2.990740 TGTTTTGGAGGTAATGGCCT 57.009 45.000 3.32 0.00 42.53 5.19
3325 3580 2.406616 GGTAATGGCCTGTGCACGG 61.407 63.158 19.25 19.25 40.13 4.94
3349 3604 1.243902 CTAACCCCATTTGTGCACGT 58.756 50.000 13.13 0.00 0.00 4.49
3365 3620 2.474032 GCACGTCTCGTAATCCAAAAGC 60.474 50.000 0.00 0.00 38.32 3.51
3432 3688 2.025589 GCTAGACCCAGTGTTTAGCC 57.974 55.000 0.00 0.00 46.70 3.93
3438 3694 2.388232 CCAGTGTTTAGCCGCGTCC 61.388 63.158 4.92 0.00 0.00 4.79
3467 3723 1.000283 GTCAGTCAGTCACAGGTCTGG 60.000 57.143 2.87 0.00 32.06 3.86
3504 3760 2.802247 GCAGGAAAGACAATTTTGTGCC 59.198 45.455 0.00 0.00 42.43 5.01
3517 3773 1.785041 TTGTGCCGTGAGCTTTCTGC 61.785 55.000 0.00 0.00 44.23 4.26
3529 3785 2.170187 AGCTTTCTGCAGATGAGGTAGG 59.830 50.000 23.11 8.99 45.94 3.18
3530 3786 2.559440 CTTTCTGCAGATGAGGTAGGC 58.441 52.381 19.04 0.00 0.00 3.93
3531 3787 0.461548 TTCTGCAGATGAGGTAGGCG 59.538 55.000 19.04 0.00 0.00 5.52
3586 3845 1.014044 GCTCGTGAGTTCATTGGCGA 61.014 55.000 0.00 0.00 0.00 5.54
3587 3846 1.645034 CTCGTGAGTTCATTGGCGAT 58.355 50.000 0.00 0.00 0.00 4.58
3588 3847 1.590238 CTCGTGAGTTCATTGGCGATC 59.410 52.381 0.00 0.00 0.00 3.69
3589 3848 0.298707 CGTGAGTTCATTGGCGATCG 59.701 55.000 11.69 11.69 0.00 3.69
3590 3849 1.640428 GTGAGTTCATTGGCGATCGA 58.360 50.000 21.57 0.00 0.00 3.59
3591 3850 1.590238 GTGAGTTCATTGGCGATCGAG 59.410 52.381 21.57 2.41 0.00 4.04
3592 3851 1.212616 GAGTTCATTGGCGATCGAGG 58.787 55.000 21.57 0.00 0.00 4.63
3593 3852 0.537188 AGTTCATTGGCGATCGAGGT 59.463 50.000 21.57 0.00 0.00 3.85
3594 3853 1.066143 AGTTCATTGGCGATCGAGGTT 60.066 47.619 21.57 0.00 0.00 3.50
3595 3854 1.062587 GTTCATTGGCGATCGAGGTTG 59.937 52.381 21.57 10.52 0.00 3.77
3596 3855 0.461870 TCATTGGCGATCGAGGTTGG 60.462 55.000 21.57 2.97 0.00 3.77
3597 3856 0.461870 CATTGGCGATCGAGGTTGGA 60.462 55.000 21.57 0.00 0.00 3.53
3598 3857 0.179073 ATTGGCGATCGAGGTTGGAG 60.179 55.000 21.57 0.00 0.00 3.86
3599 3858 1.541310 TTGGCGATCGAGGTTGGAGT 61.541 55.000 21.57 0.00 0.00 3.85
3600 3859 1.519455 GGCGATCGAGGTTGGAGTG 60.519 63.158 21.57 0.00 0.00 3.51
3643 3902 1.993369 GCGCCTTTGGACACATAGCC 61.993 60.000 0.00 0.00 0.00 3.93
3644 3903 0.392998 CGCCTTTGGACACATAGCCT 60.393 55.000 0.00 0.00 0.00 4.58
3673 3932 2.805546 CAGCACATGCCTGATGCC 59.194 61.111 7.95 0.00 43.38 4.40
3674 3933 1.753078 CAGCACATGCCTGATGCCT 60.753 57.895 7.95 0.00 43.38 4.75
3697 3956 4.996758 TCTCATCTCTGACGATCTGATCTC 59.003 45.833 15.16 11.64 0.00 2.75
3705 3964 1.269174 ACGATCTGATCTCGCTCCATG 59.731 52.381 15.16 0.00 39.71 3.66
3766 4028 1.420378 TGCAAAAATCAGCATGCACG 58.580 45.000 21.98 10.81 43.32 5.34
3767 4029 0.094046 GCAAAAATCAGCATGCACGC 59.906 50.000 21.98 0.00 38.63 5.34
3783 4045 1.096386 ACGCGCCTTTACACAAACCA 61.096 50.000 5.73 0.00 0.00 3.67
3849 4171 3.315191 TCCTTCCTTTTTGCGTCTGAAAG 59.685 43.478 0.00 0.00 0.00 2.62
3860 4182 2.689646 CGTCTGAAAGGGAGAAACCTC 58.310 52.381 0.00 0.00 40.87 3.85
3862 4184 3.615351 CGTCTGAAAGGGAGAAACCTCTC 60.615 52.174 0.00 0.00 46.51 3.20
3874 4197 4.766375 AGAAACCTCTCGTCTTTTCAACA 58.234 39.130 0.00 0.00 31.57 3.33
3898 4222 1.064240 TGGTAGTGACGGAGGAGCATA 60.064 52.381 0.00 0.00 0.00 3.14
3899 4223 2.240279 GGTAGTGACGGAGGAGCATAT 58.760 52.381 0.00 0.00 0.00 1.78
3905 4229 5.542779 AGTGACGGAGGAGCATATAATTTC 58.457 41.667 0.00 0.00 0.00 2.17
3917 4241 4.377841 GCATATAATTTCGAGCCAGACAGC 60.378 45.833 0.00 0.00 0.00 4.40
3953 4277 1.532437 TGTCATTTTCTGTCAGCAGCG 59.468 47.619 0.00 0.00 42.29 5.18
3974 4298 2.249557 GACAGCGCTTGACCTGCATG 62.250 60.000 7.50 0.00 32.37 4.06
3977 4301 2.789917 CGCTTGACCTGCATGCTC 59.210 61.111 20.33 8.93 43.41 4.26
3978 4302 1.744368 CGCTTGACCTGCATGCTCT 60.744 57.895 20.33 0.07 43.41 4.09
3979 4303 1.801332 GCTTGACCTGCATGCTCTG 59.199 57.895 20.33 9.58 42.58 3.35
3980 4304 0.675837 GCTTGACCTGCATGCTCTGA 60.676 55.000 20.33 0.00 42.58 3.27
3981 4305 1.370609 CTTGACCTGCATGCTCTGAG 58.629 55.000 20.33 7.55 0.00 3.35
3982 4306 0.689055 TTGACCTGCATGCTCTGAGT 59.311 50.000 20.33 8.70 0.00 3.41
3983 4307 0.036671 TGACCTGCATGCTCTGAGTG 60.037 55.000 20.33 4.70 0.00 3.51
3984 4308 1.367599 GACCTGCATGCTCTGAGTGC 61.368 60.000 20.33 12.00 39.26 4.40
4012 4336 3.567478 TTCGCATCGGTGTCACGCT 62.567 57.895 0.00 0.00 0.00 5.07
4038 4362 3.576356 GGTGCATGCATCGGACCG 61.576 66.667 25.64 7.84 35.00 4.79
4041 4365 3.272334 GCATGCATCGGACCGGAC 61.272 66.667 14.21 0.00 0.00 4.79
4052 4376 4.856801 ACCGGACATCATGGGCGC 62.857 66.667 9.46 0.00 0.00 6.53
4082 4407 1.299541 CGACCTGCGGAATTATTGCT 58.700 50.000 0.00 0.00 36.03 3.91
4118 4443 2.288666 CTAACCGCTGCATTATGGTGT 58.711 47.619 0.00 0.00 34.26 4.16
4121 4446 0.378257 CCGCTGCATTATGGTGTGAC 59.622 55.000 0.00 0.00 0.00 3.67
4122 4447 0.026674 CGCTGCATTATGGTGTGACG 59.973 55.000 0.00 0.00 0.00 4.35
4129 4455 6.691754 TGCATTATGGTGTGACGATTATTT 57.308 33.333 0.00 0.00 0.00 1.40
4173 4499 1.628846 GAGGTAGCTTGTTCTTGGGGA 59.371 52.381 0.00 0.00 0.00 4.81
4174 4500 1.630878 AGGTAGCTTGTTCTTGGGGAG 59.369 52.381 0.00 0.00 0.00 4.30
4175 4501 1.628846 GGTAGCTTGTTCTTGGGGAGA 59.371 52.381 0.00 0.00 0.00 3.71
4242 4568 5.102313 GTCCCGATCAAAAATGGATTGTTC 58.898 41.667 0.00 0.00 0.00 3.18
4254 4580 9.696917 AAAAATGGATTGTTCTTGAGTATGTTC 57.303 29.630 0.00 0.00 0.00 3.18
4272 4598 5.840243 TGTTCATTGGCTGATTATTCCAG 57.160 39.130 0.00 0.00 32.72 3.86
4276 4602 6.000246 TCATTGGCTGATTATTCCAGTGTA 58.000 37.500 0.00 0.00 38.34 2.90
4292 4618 5.178623 TCCAGTGTATTCGTCATGTTTCAAC 59.821 40.000 0.00 0.00 0.00 3.18
4339 4739 5.123502 CCCAGTTCTGTTCTGAATTCTGATG 59.876 44.000 14.89 8.79 35.20 3.07
4437 4838 5.450453 TGGTCCAAGTTGAACCAAGAATTA 58.550 37.500 12.13 0.00 40.04 1.40
4448 4855 8.573035 GTTGAACCAAGAATTATAACAGACCAA 58.427 33.333 0.00 0.00 0.00 3.67
4472 4879 2.928801 TGCTGCTCTGAAACCACTTA 57.071 45.000 0.00 0.00 0.00 2.24
4479 4886 6.238648 GCTGCTCTGAAACCACTTAAAGTTAA 60.239 38.462 0.00 0.00 0.00 2.01
4480 4887 7.522236 GCTGCTCTGAAACCACTTAAAGTTAAT 60.522 37.037 0.00 0.00 0.00 1.40
4677 5091 2.164219 GCAACCCATACATTCACCACAG 59.836 50.000 0.00 0.00 0.00 3.66
4682 5096 4.206375 CCCATACATTCACCACAGCATTA 58.794 43.478 0.00 0.00 0.00 1.90
4684 5098 4.261322 CCATACATTCACCACAGCATTAGC 60.261 45.833 0.00 0.00 42.56 3.09
4717 5143 0.388520 CGACTGAATGACTGACGCCA 60.389 55.000 0.00 0.00 0.00 5.69
4772 5198 0.744771 GCCTGAACCCAATCTCCGTC 60.745 60.000 0.00 0.00 0.00 4.79
4784 5210 0.679505 TCTCCGTCACAAACCTCCAG 59.320 55.000 0.00 0.00 0.00 3.86
4814 5240 0.941463 CGTACATGATGCTCGCCCTC 60.941 60.000 0.00 0.00 0.00 4.30
4863 5289 2.357760 TCGCCGTAAGCCCAACAC 60.358 61.111 0.00 0.00 38.78 3.32
4897 5340 2.439409 GCCCAAGTAAATTACACCGGT 58.561 47.619 0.00 0.00 0.00 5.28
4905 5348 6.980051 AGTAAATTACACCGGTGAAAGATC 57.020 37.500 40.21 21.93 0.00 2.75
4935 5378 4.569180 CCTGCCGGCTGGGGTATG 62.569 72.222 37.52 16.19 35.78 2.39
5176 5619 1.251527 TGGTGACGCTCCTCTTCCTC 61.252 60.000 0.00 0.00 0.00 3.71
5359 5802 2.592308 GAGATGGGGCTGGTGGTC 59.408 66.667 0.00 0.00 0.00 4.02
5380 5823 2.512515 GTGGCCATCTCCGTGCTC 60.513 66.667 9.72 0.00 0.00 4.26
5401 5844 3.426568 GTGCTGCTCTTCGTGGCC 61.427 66.667 0.00 0.00 0.00 5.36
5587 6037 2.215604 CGACGAGGACGATGAACGC 61.216 63.158 0.00 0.00 46.94 4.84
5650 6100 3.056393 TCGACATGGGTGGTAAGTTACAG 60.056 47.826 14.81 0.00 0.00 2.74
5666 6116 5.880341 AGTTACAGCAACTTGTTCTGAAAC 58.120 37.500 14.83 4.62 45.54 2.78
5668 6118 6.072175 AGTTACAGCAACTTGTTCTGAAACAA 60.072 34.615 14.83 3.92 45.54 2.83
5680 6130 5.181811 TGTTCTGAAACAATGCCTACATCTG 59.818 40.000 0.00 0.00 42.34 2.90
5682 6132 5.559770 TCTGAAACAATGCCTACATCTGAA 58.440 37.500 0.00 0.00 34.62 3.02
5689 6139 3.443099 TGCCTACATCTGAACATCTCG 57.557 47.619 0.00 0.00 0.00 4.04
5691 6141 3.447229 TGCCTACATCTGAACATCTCGAA 59.553 43.478 0.00 0.00 0.00 3.71
5700 6150 3.515630 TGAACATCTCGAACAGAGCATC 58.484 45.455 0.00 0.00 46.44 3.91
5839 6341 5.126061 AGCAACACAAACTGTCATCTTTCTT 59.874 36.000 0.00 0.00 30.29 2.52
5843 6363 7.020914 ACACAAACTGTCATCTTTCTTCTTC 57.979 36.000 0.00 0.00 0.00 2.87
5848 6368 6.418057 ACTGTCATCTTTCTTCTTCTGTCT 57.582 37.500 0.00 0.00 0.00 3.41
5852 6372 6.927936 TGTCATCTTTCTTCTTCTGTCTTGAG 59.072 38.462 0.00 0.00 0.00 3.02
5924 6444 3.122297 CGAGATCATGAAGAAGCTGGAC 58.878 50.000 0.00 0.00 0.00 4.02
6071 6591 2.019984 GAGAACATGGTCTGATTGGGC 58.980 52.381 20.40 0.00 0.00 5.36
6072 6592 1.106285 GAACATGGTCTGATTGGGCC 58.894 55.000 2.64 0.00 0.00 5.80
6073 6593 0.706433 AACATGGTCTGATTGGGCCT 59.294 50.000 4.53 0.00 0.00 5.19
6074 6594 0.033796 ACATGGTCTGATTGGGCCTG 60.034 55.000 4.53 0.00 0.00 4.85
6075 6595 0.256752 CATGGTCTGATTGGGCCTGA 59.743 55.000 4.53 0.00 0.00 3.86
6076 6596 0.257039 ATGGTCTGATTGGGCCTGAC 59.743 55.000 4.53 5.46 33.49 3.51
6152 6677 4.056740 TCTCGAGCTATTGTACTCCTACG 58.943 47.826 7.81 0.00 0.00 3.51
6155 6680 4.637534 TCGAGCTATTGTACTCCTACGTTT 59.362 41.667 0.00 0.00 0.00 3.60
6265 6791 8.009974 GTCGGTAATGTGAACAAATGATATAGC 58.990 37.037 0.00 0.00 0.00 2.97
6286 6812 3.868754 GCACGAGACTAACCTTCCCAAAT 60.869 47.826 0.00 0.00 0.00 2.32
6289 6815 5.935789 CACGAGACTAACCTTCCCAAATTTA 59.064 40.000 0.00 0.00 0.00 1.40
6292 6818 6.092259 CGAGACTAACCTTCCCAAATTTACTG 59.908 42.308 0.00 0.00 0.00 2.74
6295 6821 4.871933 AACCTTCCCAAATTTACTGCTG 57.128 40.909 0.00 0.00 0.00 4.41
6309 6887 5.429681 TTACTGCTGCCCTAATTAACAGA 57.570 39.130 11.91 0.78 31.67 3.41
6394 6992 6.699575 ACAGAAAAGTTAACACTTGCAGAT 57.300 33.333 8.61 0.00 42.89 2.90
6395 6993 6.729187 ACAGAAAAGTTAACACTTGCAGATC 58.271 36.000 8.61 0.00 42.89 2.75
6396 6994 6.145535 CAGAAAAGTTAACACTTGCAGATCC 58.854 40.000 8.61 0.00 42.89 3.36
6397 6995 5.827797 AGAAAAGTTAACACTTGCAGATCCA 59.172 36.000 8.61 0.00 42.89 3.41
6398 6996 5.438761 AAAGTTAACACTTGCAGATCCAC 57.561 39.130 8.61 0.00 42.89 4.02
6400 6998 4.067896 AGTTAACACTTGCAGATCCACAG 58.932 43.478 8.61 0.00 0.00 3.66
6401 6999 2.936919 AACACTTGCAGATCCACAGA 57.063 45.000 0.00 0.00 0.00 3.41
6402 7000 3.430042 AACACTTGCAGATCCACAGAT 57.570 42.857 0.00 0.00 34.57 2.90
6403 7001 3.430042 ACACTTGCAGATCCACAGATT 57.570 42.857 0.00 0.00 30.90 2.40
6416 7025 6.825721 AGATCCACAGATTCCAACATAAGAAC 59.174 38.462 0.00 0.00 30.90 3.01
6428 7037 7.855375 TCCAACATAAGAACAGATCAGAGAAT 58.145 34.615 0.00 0.00 0.00 2.40
6462 7071 7.605449 ACTACCAAATTCCAACATGAAAGATG 58.395 34.615 0.00 0.00 0.00 2.90
6467 7076 5.909621 ATTCCAACATGAAAGATGAGTGG 57.090 39.130 0.00 0.00 32.74 4.00
6472 7081 6.156775 TCCAACATGAAAGATGAGTGGATCTA 59.843 38.462 0.00 0.00 34.40 1.98
6474 7083 7.041303 CCAACATGAAAGATGAGTGGATCTATG 60.041 40.741 0.00 0.00 32.11 2.23
6476 7085 6.990939 ACATGAAAGATGAGTGGATCTATGTG 59.009 38.462 0.00 0.00 31.97 3.21
6485 7096 7.905604 TGAGTGGATCTATGTGTTGTAAAAG 57.094 36.000 0.00 0.00 0.00 2.27
6544 7155 8.689972 TCTCATATATCGTCATTGCAGACATAT 58.310 33.333 6.87 9.93 38.43 1.78
6549 7160 8.694975 ATATCGTCATTGCAGACATATAGAAC 57.305 34.615 6.87 0.00 38.43 3.01
6592 7203 7.946918 TTACAAAATGCTTCGATTCATAACG 57.053 32.000 0.00 0.00 0.00 3.18
6786 7409 1.125566 GAACGAAACGGTTAAGGCTCG 59.874 52.381 9.60 9.60 0.00 5.03
6843 7466 3.368948 GCACCCTACTCTTCTTCTTCTGG 60.369 52.174 0.00 0.00 0.00 3.86
6852 7475 4.735132 TTCTTCTGGCCGGCGTCG 62.735 66.667 22.54 11.29 0.00 5.12
6939 7562 0.390472 CCCTCTTGAACTCGTGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
6969 7592 3.254060 CTTCAGCAGCACGTACTGTATT 58.746 45.455 16.91 1.21 39.96 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.577945 CGGGAAATTAGCGAAAGTGTTAGTA 59.422 40.000 0.00 0.00 0.00 1.82
1 2 4.390909 CGGGAAATTAGCGAAAGTGTTAGT 59.609 41.667 0.00 0.00 0.00 2.24
2 3 4.726876 GCGGGAAATTAGCGAAAGTGTTAG 60.727 45.833 0.00 0.00 0.00 2.34
3 4 3.125658 GCGGGAAATTAGCGAAAGTGTTA 59.874 43.478 0.00 0.00 0.00 2.41
4 5 2.095415 GCGGGAAATTAGCGAAAGTGTT 60.095 45.455 0.00 0.00 0.00 3.32
5 6 1.467342 GCGGGAAATTAGCGAAAGTGT 59.533 47.619 0.00 0.00 0.00 3.55
6 7 1.737793 AGCGGGAAATTAGCGAAAGTG 59.262 47.619 0.00 0.00 35.78 3.16
7 8 1.737793 CAGCGGGAAATTAGCGAAAGT 59.262 47.619 0.00 0.00 35.78 2.66
8 9 1.737793 ACAGCGGGAAATTAGCGAAAG 59.262 47.619 0.00 0.00 35.78 2.62
9 10 1.466950 CACAGCGGGAAATTAGCGAAA 59.533 47.619 0.00 0.00 35.78 3.46
10 11 1.083489 CACAGCGGGAAATTAGCGAA 58.917 50.000 0.00 0.00 35.78 4.70
11 12 0.742990 CCACAGCGGGAAATTAGCGA 60.743 55.000 0.00 0.00 35.78 4.93
12 13 1.721487 CCACAGCGGGAAATTAGCG 59.279 57.895 0.00 0.00 35.78 4.26
22 23 1.674962 GAGTAGTACTACCCACAGCGG 59.325 57.143 25.97 0.00 36.75 5.52
23 24 2.641305 AGAGTAGTACTACCCACAGCG 58.359 52.381 25.97 0.00 36.75 5.18
24 25 5.402997 AAAAGAGTAGTACTACCCACAGC 57.597 43.478 25.97 11.09 36.75 4.40
58 59 4.788679 ACTACCCACAGCAGTTACTTTTT 58.211 39.130 0.00 0.00 0.00 1.94
59 60 4.432980 ACTACCCACAGCAGTTACTTTT 57.567 40.909 0.00 0.00 0.00 2.27
60 61 4.345837 TGTACTACCCACAGCAGTTACTTT 59.654 41.667 0.00 0.00 0.00 2.66
61 62 3.899360 TGTACTACCCACAGCAGTTACTT 59.101 43.478 0.00 0.00 0.00 2.24
62 63 3.257624 GTGTACTACCCACAGCAGTTACT 59.742 47.826 0.00 0.00 33.00 2.24
63 64 3.582780 GTGTACTACCCACAGCAGTTAC 58.417 50.000 0.00 0.00 33.00 2.50
64 65 2.229543 CGTGTACTACCCACAGCAGTTA 59.770 50.000 0.00 0.00 33.00 2.24
65 66 1.000506 CGTGTACTACCCACAGCAGTT 59.999 52.381 0.00 0.00 33.00 3.16
66 67 0.601558 CGTGTACTACCCACAGCAGT 59.398 55.000 0.00 0.00 33.00 4.40
109 115 2.748058 AAAATCGCCACGGAGCTGGT 62.748 55.000 0.00 0.00 32.63 4.00
124 130 3.685756 CGCCTCAAAAATGGATGCAAAAT 59.314 39.130 0.00 0.00 0.00 1.82
197 203 5.296780 TGCCAAAACAAGAACAAAAACACAA 59.703 32.000 0.00 0.00 0.00 3.33
290 298 0.609131 ATCTGGAAAGGTGGTTGGCG 60.609 55.000 0.00 0.00 0.00 5.69
301 309 1.890489 TCGAACGGTCTGATCTGGAAA 59.110 47.619 0.00 0.00 0.00 3.13
340 359 4.980434 CAGGTATCGTTTCGGTATTGTAGG 59.020 45.833 0.00 0.00 0.00 3.18
344 363 3.000925 GTGCAGGTATCGTTTCGGTATTG 59.999 47.826 0.00 0.00 0.00 1.90
351 370 1.580704 CGTACGTGCAGGTATCGTTTC 59.419 52.381 21.09 7.41 38.69 2.78
377 396 4.037208 GTGTGTATGTATACTGCCTACGGT 59.963 45.833 4.17 0.00 39.33 4.83
388 407 6.748198 CGTGTATGTGTGTGTGTGTATGTATA 59.252 38.462 0.00 0.00 0.00 1.47
395 414 2.588027 TCGTGTATGTGTGTGTGTGT 57.412 45.000 0.00 0.00 0.00 3.72
396 415 3.935027 TTTCGTGTATGTGTGTGTGTG 57.065 42.857 0.00 0.00 0.00 3.82
397 416 5.270083 CAATTTTCGTGTATGTGTGTGTGT 58.730 37.500 0.00 0.00 0.00 3.72
398 417 4.146271 GCAATTTTCGTGTATGTGTGTGTG 59.854 41.667 0.00 0.00 0.00 3.82
399 418 4.201960 TGCAATTTTCGTGTATGTGTGTGT 60.202 37.500 0.00 0.00 0.00 3.72
400 419 4.286101 TGCAATTTTCGTGTATGTGTGTG 58.714 39.130 0.00 0.00 0.00 3.82
413 432 4.796312 ACGTGTACTGTGTTTGCAATTTTC 59.204 37.500 0.00 0.00 0.00 2.29
425 444 2.815657 TGTGCAAAACGTGTACTGTG 57.184 45.000 0.00 0.00 42.85 3.66
461 480 1.741401 CGATCCGGCTGCTGACAAA 60.741 57.895 10.70 0.00 0.00 2.83
470 489 2.509336 CGTTTGCTCGATCCGGCT 60.509 61.111 0.00 0.00 0.00 5.52
507 526 2.278336 GCATCGGCGCGTACTGTA 60.278 61.111 8.43 0.00 0.00 2.74
529 548 0.535780 TCTGCCATTGATCCATCGGC 60.536 55.000 11.10 11.10 43.28 5.54
530 549 1.520494 CTCTGCCATTGATCCATCGG 58.480 55.000 0.00 0.00 0.00 4.18
531 550 0.873054 GCTCTGCCATTGATCCATCG 59.127 55.000 0.00 0.00 0.00 3.84
618 651 0.725117 GGGTTATTGTTGGCGTCTCG 59.275 55.000 0.00 0.00 0.00 4.04
619 652 2.109425 AGGGTTATTGTTGGCGTCTC 57.891 50.000 0.00 0.00 0.00 3.36
655 688 1.903877 AAGTGACGGGATCTGCAGGG 61.904 60.000 15.13 1.08 0.00 4.45
705 738 1.248785 TGACAGGGACCTACGTGCTC 61.249 60.000 0.00 0.00 0.00 4.26
779 822 2.590859 GGGATTAGCGTTCCGGGC 60.591 66.667 0.00 0.00 33.82 6.13
889 948 4.688419 TTGCGCTTGCGCTTGCTC 62.688 61.111 33.96 13.84 43.34 4.26
890 949 4.695231 CTTGCGCTTGCGCTTGCT 62.695 61.111 33.96 0.00 43.34 3.91
891 950 4.988486 ACTTGCGCTTGCGCTTGC 62.988 61.111 33.96 12.14 43.34 4.01
892 951 3.095278 CACTTGCGCTTGCGCTTG 61.095 61.111 33.96 27.55 43.34 4.01
893 952 4.332637 CCACTTGCGCTTGCGCTT 62.333 61.111 33.96 19.19 43.34 4.68
896 955 2.660553 TTTCACCACTTGCGCTTGCG 62.661 55.000 9.73 10.90 43.34 4.85
897 956 0.318955 ATTTCACCACTTGCGCTTGC 60.319 50.000 9.73 0.00 39.78 4.01
898 957 1.666888 GGATTTCACCACTTGCGCTTG 60.667 52.381 9.73 3.49 0.00 4.01
899 958 0.598065 GGATTTCACCACTTGCGCTT 59.402 50.000 9.73 0.00 0.00 4.68
900 959 0.537143 TGGATTTCACCACTTGCGCT 60.537 50.000 9.73 0.00 34.77 5.92
925 989 2.935849 TCTAACTGTGTGTGCTGTGTTG 59.064 45.455 0.00 0.00 0.00 3.33
1020 1092 3.691342 CCGTCCACGCTCTTCCCA 61.691 66.667 0.00 0.00 38.18 4.37
1227 1299 1.264749 TGAAGGTGCCGAGCCTGTAT 61.265 55.000 0.00 0.00 36.30 2.29
1354 1426 6.623549 GCAACATATATATGGCCATGTGTGAC 60.624 42.308 29.04 14.65 38.00 3.67
1389 1461 2.682893 GGCACGAAGGCTCATACAG 58.317 57.895 0.00 0.00 40.24 2.74
1406 1478 1.827344 TCATACAGTGAGCCACAGAGG 59.173 52.381 0.00 0.00 36.74 3.69
1416 1488 4.095932 GTCCGTCACATACTCATACAGTGA 59.904 45.833 0.00 0.00 36.43 3.41
1419 1491 4.602006 CAGTCCGTCACATACTCATACAG 58.398 47.826 0.00 0.00 0.00 2.74
1420 1492 3.181490 GCAGTCCGTCACATACTCATACA 60.181 47.826 0.00 0.00 0.00 2.29
1421 1493 3.181490 TGCAGTCCGTCACATACTCATAC 60.181 47.826 0.00 0.00 0.00 2.39
1425 1526 1.472878 TCTGCAGTCCGTCACATACTC 59.527 52.381 14.67 0.00 0.00 2.59
1427 1528 1.202582 AGTCTGCAGTCCGTCACATAC 59.797 52.381 14.67 0.00 0.00 2.39
1436 1537 0.457681 GAAGCTCGAGTCTGCAGTCC 60.458 60.000 14.67 5.81 0.00 3.85
1662 1763 0.321919 ACGAAGCTCATGCATGGTGT 60.322 50.000 25.97 12.47 42.74 4.16
1663 1764 0.098200 CACGAAGCTCATGCATGGTG 59.902 55.000 25.97 19.43 39.40 4.17
1692 1793 8.937884 TCGAAATCGATGGTTTGATTAGTTAAA 58.062 29.630 0.00 0.00 44.22 1.52
1715 1816 4.960469 AGTAGGTGTGATTTCCCTAATCGA 59.040 41.667 0.00 0.00 44.67 3.59
1724 1825 6.096282 AGAGAGAGCTTAGTAGGTGTGATTTC 59.904 42.308 0.00 0.00 30.79 2.17
1734 1835 4.020543 ACCCACAAGAGAGAGCTTAGTAG 58.979 47.826 0.00 0.00 0.00 2.57
1735 1836 4.017808 GACCCACAAGAGAGAGCTTAGTA 58.982 47.826 0.00 0.00 0.00 1.82
1736 1837 2.829120 GACCCACAAGAGAGAGCTTAGT 59.171 50.000 0.00 0.00 0.00 2.24
1757 1858 4.442706 CAACTACCTAGGTATGTGGCTTG 58.557 47.826 22.02 10.17 0.00 4.01
1769 1870 4.440250 CGTCCATTCTCACCAACTACCTAG 60.440 50.000 0.00 0.00 0.00 3.02
1773 1874 3.056749 ACTCGTCCATTCTCACCAACTAC 60.057 47.826 0.00 0.00 0.00 2.73
1775 1876 1.971357 ACTCGTCCATTCTCACCAACT 59.029 47.619 0.00 0.00 0.00 3.16
1853 1969 5.633182 GCTGCATCTAGAGCTACAACTAATC 59.367 44.000 13.14 0.00 32.12 1.75
1859 1975 3.790091 CTTGCTGCATCTAGAGCTACAA 58.210 45.455 1.84 14.12 36.11 2.41
1882 1998 2.193127 CCTCCACACCCATAGTACCAA 58.807 52.381 0.00 0.00 0.00 3.67
1884 2000 1.875488 ACCTCCACACCCATAGTACC 58.125 55.000 0.00 0.00 0.00 3.34
1885 2001 3.994931 AAACCTCCACACCCATAGTAC 57.005 47.619 0.00 0.00 0.00 2.73
1886 2002 4.035112 CCTAAACCTCCACACCCATAGTA 58.965 47.826 0.00 0.00 0.00 1.82
1887 2003 2.844348 CCTAAACCTCCACACCCATAGT 59.156 50.000 0.00 0.00 0.00 2.12
1888 2004 2.844348 ACCTAAACCTCCACACCCATAG 59.156 50.000 0.00 0.00 0.00 2.23
1890 2006 1.354368 CACCTAAACCTCCACACCCAT 59.646 52.381 0.00 0.00 0.00 4.00
1891 2007 0.768622 CACCTAAACCTCCACACCCA 59.231 55.000 0.00 0.00 0.00 4.51
1892 2008 0.769247 ACACCTAAACCTCCACACCC 59.231 55.000 0.00 0.00 0.00 4.61
1893 2009 3.072038 AGTTACACCTAAACCTCCACACC 59.928 47.826 0.00 0.00 0.00 4.16
1923 2039 1.741770 CCCAGTAAGTCCGTGCTGC 60.742 63.158 0.00 0.00 0.00 5.25
1924 2040 0.389948 GTCCCAGTAAGTCCGTGCTG 60.390 60.000 0.00 0.00 0.00 4.41
1931 2047 1.542915 TGCACGTAGTCCCAGTAAGTC 59.457 52.381 0.00 0.00 41.61 3.01
1959 2116 2.338500 GACAGGAAGTCCACGATGAAC 58.662 52.381 0.00 0.00 41.56 3.18
2156 2329 3.189287 GGGTAACAAGATGCAAGTGTCAG 59.811 47.826 0.00 0.00 39.74 3.51
2212 2388 9.331466 AGGTACCTACTAGCTACTATGTATGTA 57.669 37.037 14.41 0.00 30.99 2.29
2213 2389 8.217188 AGGTACCTACTAGCTACTATGTATGT 57.783 38.462 14.41 0.00 30.99 2.29
2214 2390 9.820725 CTAGGTACCTACTAGCTACTATGTATG 57.179 40.741 18.10 0.00 34.83 2.39
2215 2391 8.991275 CCTAGGTACCTACTAGCTACTATGTAT 58.009 40.741 18.10 0.00 37.25 2.29
2216 2392 8.180165 TCCTAGGTACCTACTAGCTACTATGTA 58.820 40.741 18.10 0.00 37.25 2.29
2217 2393 7.021873 TCCTAGGTACCTACTAGCTACTATGT 58.978 42.308 18.10 0.00 37.25 2.29
2218 2394 7.180766 AGTCCTAGGTACCTACTAGCTACTATG 59.819 44.444 18.10 3.68 37.25 2.23
2219 2395 7.255654 AGTCCTAGGTACCTACTAGCTACTAT 58.744 42.308 18.10 0.00 37.25 2.12
2245 2431 1.152881 GCTACCATGGGCTCTTGGG 60.153 63.158 21.76 6.90 41.12 4.12
2258 2444 1.098050 CTGAAAGGTGCATGGCTACC 58.902 55.000 0.00 0.00 37.23 3.18
2275 2461 4.146961 CACAATACGCAAGAAAAAGCACTG 59.853 41.667 0.00 0.00 43.62 3.66
2291 2479 4.802876 GCCAGTAGCTTGATCACAATAC 57.197 45.455 0.00 0.00 38.99 1.89
2308 2496 5.007136 GCTGCAAAAATCTACTAGTAGCCAG 59.993 44.000 22.87 17.84 33.32 4.85
2323 2511 1.715862 TACGCACGGTGCTGCAAAAA 61.716 50.000 28.42 5.36 42.25 1.94
2345 2533 4.272991 GGCGACTATATATCTACGGACAGG 59.727 50.000 0.00 0.00 0.00 4.00
2359 2547 3.958147 TCATGGAGTTCTTGGCGACTATA 59.042 43.478 0.00 0.00 0.00 1.31
2360 2548 2.766263 TCATGGAGTTCTTGGCGACTAT 59.234 45.455 0.00 0.00 0.00 2.12
2361 2549 2.176045 TCATGGAGTTCTTGGCGACTA 58.824 47.619 0.00 0.00 0.00 2.59
2362 2550 0.976641 TCATGGAGTTCTTGGCGACT 59.023 50.000 0.00 0.00 0.00 4.18
2448 2650 1.078143 CTACCCCAGAGGCTTGTGC 60.078 63.158 0.00 0.00 40.58 4.57
2472 2677 4.220821 ACCTTGCCGGTCTAGACATATATG 59.779 45.833 23.91 11.29 44.93 1.78
2534 2739 1.129326 GTCGTGTTCTGTCCTGTTCG 58.871 55.000 0.00 0.00 0.00 3.95
2535 2740 1.859080 GTGTCGTGTTCTGTCCTGTTC 59.141 52.381 0.00 0.00 0.00 3.18
2536 2741 1.801395 CGTGTCGTGTTCTGTCCTGTT 60.801 52.381 0.00 0.00 0.00 3.16
2537 2742 0.248907 CGTGTCGTGTTCTGTCCTGT 60.249 55.000 0.00 0.00 0.00 4.00
2538 2743 0.030235 TCGTGTCGTGTTCTGTCCTG 59.970 55.000 0.00 0.00 0.00 3.86
2539 2744 0.030369 GTCGTGTCGTGTTCTGTCCT 59.970 55.000 0.00 0.00 0.00 3.85
2540 2745 1.266786 CGTCGTGTCGTGTTCTGTCC 61.267 60.000 0.00 0.00 0.00 4.02
2541 2746 1.266786 CCGTCGTGTCGTGTTCTGTC 61.267 60.000 0.00 0.00 0.00 3.51
2542 2747 1.298863 CCGTCGTGTCGTGTTCTGT 60.299 57.895 0.00 0.00 0.00 3.41
2543 2748 2.645510 GCCGTCGTGTCGTGTTCTG 61.646 63.158 0.00 0.00 0.00 3.02
2544 2749 2.354305 GCCGTCGTGTCGTGTTCT 60.354 61.111 0.00 0.00 0.00 3.01
2545 2750 3.749373 CGCCGTCGTGTCGTGTTC 61.749 66.667 0.00 0.00 0.00 3.18
2546 2751 4.254672 TCGCCGTCGTGTCGTGTT 62.255 61.111 0.00 0.00 36.96 3.32
2589 2794 0.694771 ATGGACATAGGCATCGGCAT 59.305 50.000 0.00 0.00 43.71 4.40
2590 2795 0.250424 CATGGACATAGGCATCGGCA 60.250 55.000 0.00 0.00 43.71 5.69
2591 2796 0.250467 ACATGGACATAGGCATCGGC 60.250 55.000 0.00 0.00 40.13 5.54
2592 2797 1.345741 AGACATGGACATAGGCATCGG 59.654 52.381 0.00 0.00 0.00 4.18
2593 2798 2.410939 CAGACATGGACATAGGCATCG 58.589 52.381 0.00 0.00 0.00 3.84
2594 2799 2.149578 GCAGACATGGACATAGGCATC 58.850 52.381 0.00 0.00 0.00 3.91
2638 2849 0.036010 GTATGTGACTGTGCCCAGCT 60.036 55.000 0.00 0.00 42.81 4.24
2738 2958 0.958822 AACCAATTGAACCCGTCAGC 59.041 50.000 7.12 0.00 37.61 4.26
2769 2989 3.434319 CCCATCGCCACTGCACAC 61.434 66.667 0.00 0.00 37.32 3.82
2771 2991 2.821366 CTCCCATCGCCACTGCAC 60.821 66.667 0.00 0.00 37.32 4.57
2869 3089 9.372369 CTGGGAAGTAAAGTGAGAGTAATTTAG 57.628 37.037 0.00 0.00 0.00 1.85
2872 3092 7.554959 TCTGGGAAGTAAAGTGAGAGTAATT 57.445 36.000 0.00 0.00 0.00 1.40
2873 3093 7.621683 AGATCTGGGAAGTAAAGTGAGAGTAAT 59.378 37.037 0.00 0.00 0.00 1.89
2874 3094 6.954684 AGATCTGGGAAGTAAAGTGAGAGTAA 59.045 38.462 0.00 0.00 0.00 2.24
2875 3095 6.494952 AGATCTGGGAAGTAAAGTGAGAGTA 58.505 40.000 0.00 0.00 0.00 2.59
2876 3096 5.337788 AGATCTGGGAAGTAAAGTGAGAGT 58.662 41.667 0.00 0.00 0.00 3.24
2877 3097 5.930837 AGATCTGGGAAGTAAAGTGAGAG 57.069 43.478 0.00 0.00 0.00 3.20
2920 3140 6.838198 ATCGAAAGCATGCGTAGTAATTAA 57.162 33.333 13.01 0.00 0.00 1.40
2921 3141 6.645705 CAATCGAAAGCATGCGTAGTAATTA 58.354 36.000 13.01 0.00 0.00 1.40
2925 3145 2.284150 GCAATCGAAAGCATGCGTAGTA 59.716 45.455 13.01 0.00 33.90 1.82
2926 3146 1.062587 GCAATCGAAAGCATGCGTAGT 59.937 47.619 13.01 0.00 33.90 2.73
2927 3147 1.595489 GGCAATCGAAAGCATGCGTAG 60.595 52.381 13.01 7.35 41.37 3.51
2928 3148 0.376852 GGCAATCGAAAGCATGCGTA 59.623 50.000 13.01 0.00 41.37 4.42
2929 3149 1.137404 GGCAATCGAAAGCATGCGT 59.863 52.632 13.01 6.07 41.37 5.24
2930 3150 0.179156 AAGGCAATCGAAAGCATGCG 60.179 50.000 13.01 0.00 41.37 4.73
2931 3151 2.000429 AAAGGCAATCGAAAGCATGC 58.000 45.000 10.51 10.51 40.27 4.06
2966 3188 0.305313 TGTCACGCGCAAGTTTAACC 59.695 50.000 5.73 0.00 41.68 2.85
3006 3242 4.200874 ACTACTACTGCTACACTGGCTAG 58.799 47.826 0.00 0.00 0.00 3.42
3007 3243 4.232188 ACTACTACTGCTACACTGGCTA 57.768 45.455 0.00 0.00 0.00 3.93
3011 3247 5.676584 GCCACTTACTACTACTGCTACACTG 60.677 48.000 0.00 0.00 0.00 3.66
3017 3253 1.134560 GCGCCACTTACTACTACTGCT 59.865 52.381 0.00 0.00 0.00 4.24
3038 3278 7.648039 TTAGTTTACCAGAGGAGAGATTCTC 57.352 40.000 5.49 5.49 42.66 2.87
3048 3288 3.617263 GCACGTCATTAGTTTACCAGAGG 59.383 47.826 0.00 0.00 0.00 3.69
3049 3289 3.617263 GGCACGTCATTAGTTTACCAGAG 59.383 47.826 0.00 0.00 0.00 3.35
3050 3290 3.592059 GGCACGTCATTAGTTTACCAGA 58.408 45.455 0.00 0.00 0.00 3.86
3051 3291 2.676342 GGGCACGTCATTAGTTTACCAG 59.324 50.000 0.00 0.00 0.00 4.00
3052 3292 2.038689 TGGGCACGTCATTAGTTTACCA 59.961 45.455 0.00 0.00 0.00 3.25
3123 3368 0.399806 TGGATGGATGGATGGGTCGA 60.400 55.000 0.00 0.00 0.00 4.20
3124 3369 0.694771 ATGGATGGATGGATGGGTCG 59.305 55.000 0.00 0.00 0.00 4.79
3125 3370 1.005215 GGATGGATGGATGGATGGGTC 59.995 57.143 0.00 0.00 0.00 4.46
3126 3371 1.078955 GGATGGATGGATGGATGGGT 58.921 55.000 0.00 0.00 0.00 4.51
3141 3386 0.473755 TTGGGGACGATCCATGGATG 59.526 55.000 32.05 23.43 38.64 3.51
3181 3431 6.832384 TGGTAGTACAGTAATGGAGTTAGAGG 59.168 42.308 2.06 0.00 0.00 3.69
3209 3459 5.283060 GTCATGGACGATTATAACATGCC 57.717 43.478 7.72 0.48 38.92 4.40
3251 3501 4.794439 TGTGCCGTCGCGATCCTG 62.794 66.667 14.06 2.56 38.08 3.86
3252 3502 4.498520 CTGTGCCGTCGCGATCCT 62.499 66.667 14.06 0.00 38.08 3.24
3281 3536 0.108804 ACATCGTGTCACGGATGGAC 60.109 55.000 26.69 0.00 42.81 4.02
3282 3537 0.606096 AACATCGTGTCACGGATGGA 59.394 50.000 26.69 12.37 42.81 3.41
3283 3538 1.438651 AAACATCGTGTCACGGATGG 58.561 50.000 26.69 17.44 42.81 3.51
3284 3539 2.412716 CCAAAACATCGTGTCACGGATG 60.413 50.000 24.33 24.12 42.81 3.51
3285 3540 1.804151 CCAAAACATCGTGTCACGGAT 59.196 47.619 24.33 13.69 42.81 4.18
3286 3541 1.202545 TCCAAAACATCGTGTCACGGA 60.203 47.619 24.33 12.05 42.81 4.69
3317 3572 2.345991 GTTAGCCTCCCGTGCACA 59.654 61.111 18.64 0.00 0.00 4.57
3325 3580 1.474330 CACAAATGGGGTTAGCCTCC 58.526 55.000 0.00 0.00 33.06 4.30
3349 3604 2.682856 GCATGGCTTTTGGATTACGAGA 59.317 45.455 0.00 0.00 0.00 4.04
3365 3620 1.405872 AGAGAGCAGAGAGAGCATGG 58.594 55.000 0.00 0.00 0.00 3.66
3438 3694 2.176055 CTGACTGACCGACCGACG 59.824 66.667 0.00 0.00 42.18 5.12
3446 3702 1.000283 CAGACCTGTGACTGACTGACC 60.000 57.143 9.51 0.00 36.54 4.02
3451 3707 0.039074 CGACCAGACCTGTGACTGAC 60.039 60.000 0.00 0.00 36.54 3.51
3504 3760 1.659601 CTCATCTGCAGAAAGCTCACG 59.340 52.381 22.50 2.26 45.94 4.35
3517 3773 1.365633 GCCTCGCCTACCTCATCTG 59.634 63.158 0.00 0.00 0.00 2.90
3586 3845 0.544357 TGTCCCACTCCAACCTCGAT 60.544 55.000 0.00 0.00 0.00 3.59
3587 3846 0.761323 TTGTCCCACTCCAACCTCGA 60.761 55.000 0.00 0.00 0.00 4.04
3588 3847 0.320771 CTTGTCCCACTCCAACCTCG 60.321 60.000 0.00 0.00 0.00 4.63
3589 3848 1.002544 CTCTTGTCCCACTCCAACCTC 59.997 57.143 0.00 0.00 0.00 3.85
3590 3849 1.059913 CTCTTGTCCCACTCCAACCT 58.940 55.000 0.00 0.00 0.00 3.50
3591 3850 1.056660 TCTCTTGTCCCACTCCAACC 58.943 55.000 0.00 0.00 0.00 3.77
3592 3851 2.930826 TTCTCTTGTCCCACTCCAAC 57.069 50.000 0.00 0.00 0.00 3.77
3593 3852 2.305927 GGATTCTCTTGTCCCACTCCAA 59.694 50.000 0.00 0.00 0.00 3.53
3594 3853 1.909302 GGATTCTCTTGTCCCACTCCA 59.091 52.381 0.00 0.00 0.00 3.86
3595 3854 1.909302 TGGATTCTCTTGTCCCACTCC 59.091 52.381 0.00 0.00 33.45 3.85
3596 3855 3.432890 GGATGGATTCTCTTGTCCCACTC 60.433 52.174 0.00 0.00 33.45 3.51
3597 3856 2.507471 GGATGGATTCTCTTGTCCCACT 59.493 50.000 0.00 0.00 33.45 4.00
3598 3857 2.239654 TGGATGGATTCTCTTGTCCCAC 59.760 50.000 0.00 0.00 33.45 4.61
3599 3858 2.561187 TGGATGGATTCTCTTGTCCCA 58.439 47.619 0.00 0.00 33.45 4.37
3600 3859 3.872459 ATGGATGGATTCTCTTGTCCC 57.128 47.619 0.00 0.00 33.45 4.46
3669 3928 2.064434 TCGTCAGAGATGAGAGGCAT 57.936 50.000 0.00 0.00 40.77 4.40
3670 3929 1.952990 GATCGTCAGAGATGAGAGGCA 59.047 52.381 0.00 0.00 30.72 4.75
3671 3930 2.030893 CAGATCGTCAGAGATGAGAGGC 60.031 54.545 0.00 0.00 30.72 4.70
3672 3931 3.475575 TCAGATCGTCAGAGATGAGAGG 58.524 50.000 0.00 0.00 30.72 3.69
3673 3932 4.999311 AGATCAGATCGTCAGAGATGAGAG 59.001 45.833 4.67 0.00 30.72 3.20
3674 3933 4.971939 AGATCAGATCGTCAGAGATGAGA 58.028 43.478 4.67 0.00 30.72 3.27
3705 3964 2.626840 GAGGAAGATGACAGTGGAAGC 58.373 52.381 0.00 0.00 0.00 3.86
3763 4025 0.659123 GGTTTGTGTAAAGGCGCGTG 60.659 55.000 8.43 0.00 0.00 5.34
3764 4026 1.096386 TGGTTTGTGTAAAGGCGCGT 61.096 50.000 8.43 0.00 0.00 6.01
3765 4027 0.029567 TTGGTTTGTGTAAAGGCGCG 59.970 50.000 0.00 0.00 0.00 6.86
3766 4028 2.211353 TTTGGTTTGTGTAAAGGCGC 57.789 45.000 0.00 0.00 0.00 6.53
3767 4029 4.806247 TCAAATTTGGTTTGTGTAAAGGCG 59.194 37.500 17.90 0.00 45.87 5.52
3783 4045 8.305046 ACTACTAGAGAGCAGAGATCAAATTT 57.695 34.615 0.00 0.00 0.00 1.82
3849 4171 3.244112 TGAAAAGACGAGAGGTTTCTCCC 60.244 47.826 0.00 0.00 45.85 4.30
3860 4182 4.552166 ACCAACATGTTGAAAAGACGAG 57.448 40.909 34.76 19.01 42.93 4.18
3862 4184 5.007234 TCACTACCAACATGTTGAAAAGACG 59.993 40.000 34.76 20.29 42.93 4.18
3874 4197 1.825474 CTCCTCCGTCACTACCAACAT 59.175 52.381 0.00 0.00 0.00 2.71
3898 4222 2.205074 CGCTGTCTGGCTCGAAATTAT 58.795 47.619 0.00 0.00 0.00 1.28
3899 4223 1.640428 CGCTGTCTGGCTCGAAATTA 58.360 50.000 0.00 0.00 0.00 1.40
3929 4253 2.543848 TGCTGACAGAAAATGACACGAC 59.456 45.455 6.65 0.00 30.30 4.34
3953 4277 2.743928 CAGGTCAAGCGCTGTCCC 60.744 66.667 12.58 11.33 34.03 4.46
3974 4298 2.091852 AACAAGCTAGCACTCAGAGC 57.908 50.000 18.83 0.00 36.42 4.09
3977 4301 2.412065 GCGAAAACAAGCTAGCACTCAG 60.412 50.000 18.83 3.97 0.00 3.35
3978 4302 1.531149 GCGAAAACAAGCTAGCACTCA 59.469 47.619 18.83 0.00 0.00 3.41
3979 4303 1.531149 TGCGAAAACAAGCTAGCACTC 59.469 47.619 18.83 2.85 0.00 3.51
3980 4304 1.593196 TGCGAAAACAAGCTAGCACT 58.407 45.000 18.83 0.00 0.00 4.40
3981 4305 2.509870 GATGCGAAAACAAGCTAGCAC 58.490 47.619 18.83 0.00 37.44 4.40
3982 4306 1.128507 CGATGCGAAAACAAGCTAGCA 59.871 47.619 18.83 0.00 39.02 3.49
3983 4307 1.529826 CCGATGCGAAAACAAGCTAGC 60.530 52.381 6.62 6.62 0.00 3.42
3984 4308 1.732259 ACCGATGCGAAAACAAGCTAG 59.268 47.619 0.00 0.00 0.00 3.42
4012 4336 2.825387 GCATGCACCTCGCCATCA 60.825 61.111 14.21 0.00 41.33 3.07
4022 4346 3.576356 CCGGTCCGATGCATGCAC 61.576 66.667 25.37 15.77 0.00 4.57
4041 4365 2.828095 TTTCCCGCGCCCATGATG 60.828 61.111 0.00 0.00 0.00 3.07
4052 4376 2.125512 CAGGTCGGCTCTTTCCCG 60.126 66.667 0.00 0.00 46.88 5.14
4082 4407 2.290705 GGTTAGTGGAGCTTGGCCTTTA 60.291 50.000 3.32 0.00 0.00 1.85
4129 4455 7.795047 TCAGGCATCTCATTTCAGATTAGTTA 58.205 34.615 0.00 0.00 30.07 2.24
4173 4499 5.185249 ACACTACCACACGTGATATTCTTCT 59.815 40.000 25.01 0.00 35.23 2.85
4174 4500 5.408356 ACACTACCACACGTGATATTCTTC 58.592 41.667 25.01 0.00 35.23 2.87
4175 4501 5.401531 ACACTACCACACGTGATATTCTT 57.598 39.130 25.01 0.00 35.23 2.52
4213 4539 7.687941 ATCCATTTTTGATCGGGACATATAC 57.312 36.000 0.00 0.00 0.00 1.47
4214 4540 7.723616 ACAATCCATTTTTGATCGGGACATATA 59.276 33.333 0.00 0.00 0.00 0.86
4215 4541 6.550854 ACAATCCATTTTTGATCGGGACATAT 59.449 34.615 0.00 0.00 0.00 1.78
4234 4560 7.253422 CCAATGAACATACTCAAGAACAATCC 58.747 38.462 0.00 0.00 0.00 3.01
4242 4568 6.446781 AATCAGCCAATGAACATACTCAAG 57.553 37.500 0.00 0.00 42.53 3.02
4254 4580 6.889301 ATACACTGGAATAATCAGCCAATG 57.111 37.500 0.00 0.00 35.23 2.82
4272 4598 3.838550 GCGTTGAAACATGACGAATACAC 59.161 43.478 7.95 0.00 38.99 2.90
4276 4602 1.724654 GCGCGTTGAAACATGACGAAT 60.725 47.619 8.43 0.00 38.99 3.34
4292 4618 4.312231 CATATGGCCGGTTGCGCG 62.312 66.667 0.00 0.00 42.61 6.86
4368 4768 5.470098 GGAAGCAGTTCTGAAACAGTATTCA 59.530 40.000 3.84 0.00 37.88 2.57
4369 4769 5.703130 AGGAAGCAGTTCTGAAACAGTATTC 59.297 40.000 3.84 0.00 37.88 1.75
4371 4771 5.234466 AGGAAGCAGTTCTGAAACAGTAT 57.766 39.130 3.84 0.00 37.88 2.12
4373 4773 3.567478 AGGAAGCAGTTCTGAAACAGT 57.433 42.857 3.84 0.00 37.88 3.55
4374 4774 3.004106 CCAAGGAAGCAGTTCTGAAACAG 59.996 47.826 3.84 0.00 37.88 3.16
4376 4776 2.952310 ACCAAGGAAGCAGTTCTGAAAC 59.048 45.455 3.84 0.00 35.50 2.78
4378 4778 2.439507 AGACCAAGGAAGCAGTTCTGAA 59.560 45.455 3.84 0.00 32.72 3.02
4379 4779 2.050144 AGACCAAGGAAGCAGTTCTGA 58.950 47.619 3.84 0.00 32.72 3.27
4380 4780 2.149578 CAGACCAAGGAAGCAGTTCTG 58.850 52.381 0.00 0.00 32.72 3.02
4382 4782 2.550180 GTTCAGACCAAGGAAGCAGTTC 59.450 50.000 0.00 0.00 0.00 3.01
4383 4783 2.173569 AGTTCAGACCAAGGAAGCAGTT 59.826 45.455 0.00 0.00 0.00 3.16
4448 4855 2.555757 GTGGTTTCAGAGCAGCAAGAAT 59.444 45.455 0.00 0.00 36.22 2.40
4534 4946 0.615827 TAGGCTGCCTCTTGCTCTGA 60.616 55.000 27.16 0.22 42.00 3.27
4677 5091 3.302480 CGACATAACGTGGAAGCTAATGC 60.302 47.826 0.00 0.00 40.05 3.56
4682 5096 1.544691 AGTCGACATAACGTGGAAGCT 59.455 47.619 19.50 0.00 33.75 3.74
4684 5098 3.211803 TCAGTCGACATAACGTGGAAG 57.788 47.619 19.50 0.00 33.75 3.46
4717 5143 5.422214 ACCGATCTAGAGTGTTCCAAAAT 57.578 39.130 0.00 0.00 0.00 1.82
4772 5198 0.307760 GCGTGAACTGGAGGTTTGTG 59.692 55.000 0.00 0.00 38.41 3.33
4784 5210 2.812178 ATGTACGGCGGCGTGAAC 60.812 61.111 42.22 33.25 0.00 3.18
4814 5240 1.450312 GGTGATGAGGCCGGTCTTG 60.450 63.158 11.49 0.00 0.00 3.02
4897 5340 6.276091 CAGGTGTGAGATATTCGATCTTTCA 58.724 40.000 0.00 0.00 0.00 2.69
4905 5348 1.491670 CGGCAGGTGTGAGATATTCG 58.508 55.000 0.00 0.00 0.00 3.34
4935 5378 2.177531 CTTCCTGCGCATGTGCAC 59.822 61.111 29.26 10.75 40.62 4.57
5138 5581 3.490759 CACCGCCAGCGACATGAC 61.491 66.667 14.67 0.00 42.83 3.06
5176 5619 1.805945 GTAGTGGAAGAGCGGCGTG 60.806 63.158 9.37 0.00 0.00 5.34
5380 5823 4.379243 ACGAAGAGCAGCACCCGG 62.379 66.667 0.00 0.00 0.00 5.73
5444 5887 0.396695 TGGTCCATCCTCCGGTAGAC 60.397 60.000 0.00 0.61 37.07 2.59
5658 6108 5.559770 TCAGATGTAGGCATTGTTTCAGAA 58.440 37.500 0.00 0.00 35.07 3.02
5665 6115 5.108187 AGATGTTCAGATGTAGGCATTGT 57.892 39.130 0.00 0.00 35.07 2.71
5666 6116 4.210746 CGAGATGTTCAGATGTAGGCATTG 59.789 45.833 0.00 0.00 35.07 2.82
5668 6118 3.638627 TCGAGATGTTCAGATGTAGGCAT 59.361 43.478 0.00 0.00 38.18 4.40
5673 6123 5.677344 GCTCTGTTCGAGATGTTCAGATGTA 60.677 44.000 0.00 0.00 42.62 2.29
5677 6127 2.558359 TGCTCTGTTCGAGATGTTCAGA 59.442 45.455 0.00 0.00 42.62 3.27
5680 6130 3.779759 AGATGCTCTGTTCGAGATGTTC 58.220 45.455 0.00 0.00 42.62 3.18
5682 6132 3.023119 AGAGATGCTCTGTTCGAGATGT 58.977 45.455 0.00 0.00 42.62 3.06
5700 6150 5.269313 GTGCAGAAAGAACAAGTTTCAGAG 58.731 41.667 0.00 0.00 36.53 3.35
5839 6341 1.339438 GCCATGGCTCAAGACAGAAGA 60.339 52.381 29.98 0.00 35.91 2.87
5852 6372 1.407979 CAAGGAGAAATCAGCCATGGC 59.592 52.381 30.12 30.12 42.33 4.40
6071 6591 1.274728 CTCAACTCAGGTCAGGTCAGG 59.725 57.143 0.00 0.00 0.00 3.86
6072 6592 1.967066 ACTCAACTCAGGTCAGGTCAG 59.033 52.381 0.00 0.00 0.00 3.51
6073 6593 2.088104 ACTCAACTCAGGTCAGGTCA 57.912 50.000 0.00 0.00 0.00 4.02
6074 6594 2.103263 ACAACTCAACTCAGGTCAGGTC 59.897 50.000 0.00 0.00 0.00 3.85
6075 6595 2.119495 ACAACTCAACTCAGGTCAGGT 58.881 47.619 0.00 0.00 0.00 4.00
6076 6596 2.918712 ACAACTCAACTCAGGTCAGG 57.081 50.000 0.00 0.00 0.00 3.86
6127 6652 3.254657 AGGAGTACAATAGCTCGAGATGC 59.745 47.826 18.75 0.78 32.83 3.91
6236 6761 6.961359 TCATTTGTTCACATTACCGACTAG 57.039 37.500 0.00 0.00 0.00 2.57
6265 6791 3.396260 TTTGGGAAGGTTAGTCTCGTG 57.604 47.619 0.00 0.00 0.00 4.35
6286 6812 5.646360 GTCTGTTAATTAGGGCAGCAGTAAA 59.354 40.000 0.00 0.00 0.00 2.01
6289 6815 3.009033 TGTCTGTTAATTAGGGCAGCAGT 59.991 43.478 0.00 0.00 0.00 4.40
6292 6818 4.640201 TGAATGTCTGTTAATTAGGGCAGC 59.360 41.667 8.16 0.00 0.00 5.25
6295 6821 6.509418 TGTTGAATGTCTGTTAATTAGGGC 57.491 37.500 0.00 0.00 0.00 5.19
6329 6907 4.154737 TGCAAGTGTATTTCTGATCTGTGC 59.845 41.667 0.00 0.00 0.00 4.57
6394 6992 5.875224 TGTTCTTATGTTGGAATCTGTGGA 58.125 37.500 0.00 0.00 0.00 4.02
6395 6993 5.939883 TCTGTTCTTATGTTGGAATCTGTGG 59.060 40.000 0.00 0.00 0.00 4.17
6396 6994 7.335171 TGATCTGTTCTTATGTTGGAATCTGTG 59.665 37.037 0.00 0.00 0.00 3.66
6397 6995 7.397221 TGATCTGTTCTTATGTTGGAATCTGT 58.603 34.615 0.00 0.00 0.00 3.41
6398 6996 7.767659 TCTGATCTGTTCTTATGTTGGAATCTG 59.232 37.037 0.00 0.00 0.00 2.90
6400 6998 7.984050 TCTCTGATCTGTTCTTATGTTGGAATC 59.016 37.037 0.00 0.00 0.00 2.52
6401 6999 7.855375 TCTCTGATCTGTTCTTATGTTGGAAT 58.145 34.615 0.00 0.00 0.00 3.01
6402 7000 7.244886 TCTCTGATCTGTTCTTATGTTGGAA 57.755 36.000 0.00 0.00 0.00 3.53
6403 7001 6.857437 TCTCTGATCTGTTCTTATGTTGGA 57.143 37.500 0.00 0.00 0.00 3.53
6416 7025 8.081633 GGTAGTCAATACTGATTCTCTGATCTG 58.918 40.741 0.00 0.00 36.36 2.90
6428 7037 7.227873 TGTTGGAATTTGGTAGTCAATACTGA 58.772 34.615 0.00 0.00 36.36 3.41
6435 7044 6.775142 TCTTTCATGTTGGAATTTGGTAGTCA 59.225 34.615 0.00 0.00 0.00 3.41
6462 7071 6.316390 CCCTTTTACAACACATAGATCCACTC 59.684 42.308 0.00 0.00 0.00 3.51
6467 7076 6.316390 CACTCCCCTTTTACAACACATAGATC 59.684 42.308 0.00 0.00 0.00 2.75
6472 7081 4.447138 TCACTCCCCTTTTACAACACAT 57.553 40.909 0.00 0.00 0.00 3.21
6474 7083 5.585820 TTTTCACTCCCCTTTTACAACAC 57.414 39.130 0.00 0.00 0.00 3.32
6485 7096 6.200878 TCAGGGATATAATTTTCACTCCCC 57.799 41.667 1.85 0.00 42.81 4.81
6529 7140 5.049818 GCTGGTTCTATATGTCTGCAATGAC 60.050 44.000 0.00 0.00 37.47 3.06
6544 7155 0.321298 GTTGCCCTTCGCTGGTTCTA 60.321 55.000 0.00 0.00 38.78 2.10
6549 7160 4.697756 TCCGTTGCCCTTCGCTGG 62.698 66.667 0.00 0.00 38.78 4.85
6622 7233 4.437682 TGTCCTTGTTCAGAAATGTCCT 57.562 40.909 0.00 0.00 0.00 3.85
6625 7236 6.378280 AGAGTTTTGTCCTTGTTCAGAAATGT 59.622 34.615 0.00 0.00 0.00 2.71
6758 7381 0.665369 ACCGTTTCGTTCTGTAGGCG 60.665 55.000 0.00 0.00 0.00 5.52
6786 7409 1.374125 GCGCCCCAAAACAATGACC 60.374 57.895 0.00 0.00 0.00 4.02
6843 7466 3.774702 GACAAGAACGACGCCGGC 61.775 66.667 19.07 19.07 40.78 6.13
6852 7475 3.558418 TGTACGCAAAGAAGGACAAGAAC 59.442 43.478 0.00 0.00 0.00 3.01
6939 7562 4.810730 CTGCTGAAGCTCGAGGAG 57.189 61.111 15.58 0.00 42.66 3.69
6969 7592 0.541998 TGGACCTCGAGCTCCAGAAA 60.542 55.000 22.96 3.13 32.49 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.