Multiple sequence alignment - TraesCS4A01G028700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G028700 chr4A 100.000 3635 0 0 1 3635 21050949 21054583 0.000000e+00 6713.0
1 TraesCS4A01G028700 chr4A 82.768 383 39 10 3249 3629 705472407 705472764 2.110000e-82 316.0
2 TraesCS4A01G028700 chr4A 97.500 40 0 1 3096 3134 46078244 46078205 2.340000e-07 67.6
3 TraesCS4A01G028700 chr4D 89.953 3006 169 57 1 2966 446654413 446651501 0.000000e+00 3755.0
4 TraesCS4A01G028700 chr4D 96.491 57 2 0 3253 3309 418421983 418421927 1.070000e-15 95.3
5 TraesCS4A01G028700 chr4B 89.918 2916 174 50 1 2873 558728778 558725940 0.000000e+00 3646.0
6 TraesCS4A01G028700 chr4B 91.304 138 12 0 2965 3102 47562138 47562275 4.790000e-44 189.0
7 TraesCS4A01G028700 chr4B 90.780 141 12 1 2966 3105 283463368 283463228 1.720000e-43 187.0
8 TraesCS4A01G028700 chr3A 95.328 685 25 3 1824 2508 202581422 202582099 0.000000e+00 1081.0
9 TraesCS4A01G028700 chr3A 89.189 111 12 0 3148 3258 79450708 79450598 4.890000e-29 139.0
10 TraesCS4A01G028700 chr3A 97.436 39 1 0 3115 3153 703421732 703421770 2.340000e-07 67.6
11 TraesCS4A01G028700 chr7B 95.036 685 27 3 1824 2508 429274531 429275208 0.000000e+00 1070.0
12 TraesCS4A01G028700 chr7B 86.327 373 44 6 3266 3634 453756308 453756677 2.030000e-107 399.0
13 TraesCS4A01G028700 chr7B 91.489 141 12 0 2965 3105 350809021 350808881 1.030000e-45 195.0
14 TraesCS4A01G028700 chr5B 98.907 366 4 0 3270 3635 281821543 281821908 0.000000e+00 654.0
15 TraesCS4A01G028700 chr5B 90.071 141 14 0 2965 3105 105688450 105688310 2.230000e-42 183.0
16 TraesCS4A01G028700 chr2D 86.523 371 37 6 3266 3634 3950880 3951239 2.630000e-106 396.0
17 TraesCS4A01G028700 chr2D 96.429 56 2 0 3253 3308 616138881 616138826 3.860000e-15 93.5
18 TraesCS4A01G028700 chr2D 97.436 39 0 1 3118 3155 19246475 19246513 8.420000e-07 65.8
19 TraesCS4A01G028700 chr2D 87.931 58 1 5 3120 3171 549976609 549976666 3.030000e-06 63.9
20 TraesCS4A01G028700 chr2B 80.229 349 42 9 3288 3631 13046862 13046536 1.690000e-58 237.0
21 TraesCS4A01G028700 chr2B 80.447 179 24 6 3246 3424 3612023 3611856 3.810000e-25 126.0
22 TraesCS4A01G028700 chr2B 90.196 51 3 2 3115 3165 737633223 737633271 8.420000e-07 65.8
23 TraesCS4A01G028700 chr1B 87.374 198 21 3 3253 3447 660817464 660817660 1.310000e-54 224.0
24 TraesCS4A01G028700 chr1B 91.034 145 12 1 2961 3105 231661993 231661850 1.030000e-45 195.0
25 TraesCS4A01G028700 chr5A 77.612 402 58 17 3253 3634 24138884 24138495 7.910000e-52 215.0
26 TraesCS4A01G028700 chr5A 85.333 150 22 0 2952 3101 385383863 385384012 4.860000e-34 156.0
27 TraesCS4A01G028700 chr5A 89.381 113 12 0 3148 3260 624757564 624757452 3.780000e-30 143.0
28 TraesCS4A01G028700 chr3D 91.156 147 11 2 2956 3101 247883664 247883809 7.960000e-47 198.0
29 TraesCS4A01G028700 chr3D 90.071 141 14 0 2965 3105 325382347 325382207 2.230000e-42 183.0
30 TraesCS4A01G028700 chr3D 79.381 194 33 6 3267 3456 596024881 596025071 2.950000e-26 130.0
31 TraesCS4A01G028700 chr3D 90.000 50 4 1 3115 3163 528183595 528183644 3.030000e-06 63.9
32 TraesCS4A01G028700 chrUn 90.141 142 13 1 2965 3105 136982573 136982432 2.230000e-42 183.0
33 TraesCS4A01G028700 chr1D 90.647 139 12 1 2965 3102 160470673 160470811 2.230000e-42 183.0
34 TraesCS4A01G028700 chr1D 88.496 113 13 0 3148 3260 418878928 418878816 1.760000e-28 137.0
35 TraesCS4A01G028700 chr1D 85.714 63 5 3 3115 3176 493673791 493673850 3.030000e-06 63.9
36 TraesCS4A01G028700 chr6D 91.228 114 7 2 3148 3260 24215422 24215533 6.290000e-33 152.0
37 TraesCS4A01G028700 chr6D 88.496 113 13 0 3148 3260 389641780 389641668 1.760000e-28 137.0
38 TraesCS4A01G028700 chr7D 88.496 113 13 0 3148 3260 110133640 110133752 1.760000e-28 137.0
39 TraesCS4A01G028700 chr7A 88.496 113 13 0 3148 3260 60605106 60604994 1.760000e-28 137.0
40 TraesCS4A01G028700 chr7A 88.496 113 13 0 3148 3260 730827114 730827226 1.760000e-28 137.0
41 TraesCS4A01G028700 chr7A 91.667 48 3 1 3120 3166 643964979 643964932 8.420000e-07 65.8
42 TraesCS4A01G028700 chr7A 89.796 49 5 0 3115 3163 59809760 59809808 3.030000e-06 63.9
43 TraesCS4A01G028700 chr5D 88.496 113 13 0 3148 3260 279292999 279292887 1.760000e-28 137.0
44 TraesCS4A01G028700 chr5D 93.478 46 1 2 1593 1637 543444008 543443964 2.340000e-07 67.6
45 TraesCS4A01G028700 chr3B 86.842 76 8 1 3266 3339 206186806 206186731 2.330000e-12 84.2
46 TraesCS4A01G028700 chr6B 91.837 49 3 1 3092 3139 132145697 132145649 2.340000e-07 67.6
47 TraesCS4A01G028700 chr2A 92.500 40 2 1 3096 3134 207052356 207052317 5.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G028700 chr4A 21050949 21054583 3634 False 6713 6713 100.000 1 3635 1 chr4A.!!$F1 3634
1 TraesCS4A01G028700 chr4D 446651501 446654413 2912 True 3755 3755 89.953 1 2966 1 chr4D.!!$R2 2965
2 TraesCS4A01G028700 chr4B 558725940 558728778 2838 True 3646 3646 89.918 1 2873 1 chr4B.!!$R2 2872
3 TraesCS4A01G028700 chr3A 202581422 202582099 677 False 1081 1081 95.328 1824 2508 1 chr3A.!!$F1 684
4 TraesCS4A01G028700 chr7B 429274531 429275208 677 False 1070 1070 95.036 1824 2508 1 chr7B.!!$F1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 831 0.038251 TGACTGCTGCGTTGGAGTAG 60.038 55.0 2.15 2.15 38.71 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 2692 0.040692 GAAGTTTCCGGCGGTTCAAC 60.041 55.0 27.32 24.22 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.265095 CTGCATTACACGCCATGATCC 59.735 52.381 0.00 0.00 0.00 3.36
66 67 1.814527 CTACGTACCACCAGCTCCC 59.185 63.158 0.00 0.00 0.00 4.30
67 68 2.001361 CTACGTACCACCAGCTCCCG 62.001 65.000 0.00 0.00 0.00 5.14
68 69 4.814294 CGTACCACCAGCTCCCGC 62.814 72.222 0.00 0.00 0.00 6.13
69 70 4.468689 GTACCACCAGCTCCCGCC 62.469 72.222 0.00 0.00 36.60 6.13
70 71 4.715130 TACCACCAGCTCCCGCCT 62.715 66.667 0.00 0.00 36.60 5.52
83 84 1.472662 CCCGCCTCCCGATGATTAGT 61.473 60.000 0.00 0.00 40.02 2.24
143 146 1.003839 GATGCGTGGTGAACAGGGA 60.004 57.895 0.00 0.00 39.61 4.20
173 176 1.575922 CATGCACCGTTGTCACAGG 59.424 57.895 0.00 0.00 0.00 4.00
194 197 2.624636 GGCAAGGAAATGCTTGGATTG 58.375 47.619 15.15 0.00 45.68 2.67
215 227 6.926630 TTGTCCTTGTGGCCTAATTAAAAT 57.073 33.333 3.32 0.00 0.00 1.82
234 246 2.442212 TCCAAACAGTGATCGCGTAA 57.558 45.000 5.77 0.00 0.00 3.18
283 295 1.731720 CTCTCCTTCTTTTGGCCTCG 58.268 55.000 3.32 0.00 0.00 4.63
315 327 2.371923 GCGCCGCACAAAATCCAAC 61.372 57.895 3.15 0.00 0.00 3.77
348 360 0.389296 CCGTACGGAACATGCACAGA 60.389 55.000 30.64 0.00 37.50 3.41
349 361 0.713883 CGTACGGAACATGCACAGAC 59.286 55.000 7.57 0.00 0.00 3.51
350 362 1.790755 GTACGGAACATGCACAGACA 58.209 50.000 0.00 0.00 0.00 3.41
351 363 1.459592 GTACGGAACATGCACAGACAC 59.540 52.381 0.00 0.00 0.00 3.67
381 397 8.666573 CATCTGATCTGCAGTATAAAATCCATC 58.333 37.037 14.67 5.72 45.14 3.51
382 398 7.164122 TCTGATCTGCAGTATAAAATCCATCC 58.836 38.462 14.67 0.00 45.14 3.51
383 399 6.840527 TGATCTGCAGTATAAAATCCATCCA 58.159 36.000 14.67 0.00 0.00 3.41
384 400 7.464273 TGATCTGCAGTATAAAATCCATCCAT 58.536 34.615 14.67 0.00 0.00 3.41
423 439 0.458543 TCTTCGCAGCTCGTGGATTC 60.459 55.000 5.66 0.00 39.67 2.52
424 440 0.459237 CTTCGCAGCTCGTGGATTCT 60.459 55.000 5.66 0.00 39.67 2.40
425 441 0.815095 TTCGCAGCTCGTGGATTCTA 59.185 50.000 5.66 0.00 39.67 2.10
470 486 2.734673 GCAGGCTTTCTGTCGAGCG 61.735 63.158 0.00 0.00 45.08 5.03
496 512 4.766404 AACGCCATTAAAGAAACAGAGG 57.234 40.909 0.00 0.00 0.00 3.69
506 522 5.500546 AAAGAAACAGAGGGGGTACTTAG 57.499 43.478 0.00 0.00 0.00 2.18
508 524 2.644060 AACAGAGGGGGTACTTAGCT 57.356 50.000 0.00 0.00 0.00 3.32
510 526 2.188817 ACAGAGGGGGTACTTAGCTTG 58.811 52.381 0.00 0.00 0.00 4.01
518 534 4.202274 GGGGGTACTTAGCTTGAGATTCTC 60.202 50.000 6.73 6.73 0.00 2.87
519 535 4.651962 GGGGTACTTAGCTTGAGATTCTCT 59.348 45.833 14.54 0.00 0.00 3.10
520 536 5.129650 GGGGTACTTAGCTTGAGATTCTCTT 59.870 44.000 14.54 1.53 0.00 2.85
521 537 6.277605 GGGTACTTAGCTTGAGATTCTCTTC 58.722 44.000 14.54 4.23 0.00 2.87
522 538 6.277605 GGTACTTAGCTTGAGATTCTCTTCC 58.722 44.000 14.54 3.21 0.00 3.46
523 539 5.004922 ACTTAGCTTGAGATTCTCTTCCG 57.995 43.478 14.54 2.37 0.00 4.30
524 540 2.977772 AGCTTGAGATTCTCTTCCGG 57.022 50.000 14.54 0.00 0.00 5.14
527 543 0.175760 TTGAGATTCTCTTCCGGCCG 59.824 55.000 21.04 21.04 0.00 6.13
561 577 1.478916 GGACAGAGACCAGCTAGGAAC 59.521 57.143 8.91 3.59 41.22 3.62
564 580 1.142097 GAGACCAGCTAGGAACGGC 59.858 63.158 8.91 0.00 41.22 5.68
565 581 2.202756 GACCAGCTAGGAACGGCG 60.203 66.667 4.80 4.80 41.22 6.46
566 582 2.678934 ACCAGCTAGGAACGGCGA 60.679 61.111 16.62 0.00 41.22 5.54
567 583 2.105128 CCAGCTAGGAACGGCGAG 59.895 66.667 16.62 0.00 41.22 5.03
568 584 2.583593 CAGCTAGGAACGGCGAGC 60.584 66.667 16.62 12.23 37.09 5.03
569 585 2.756283 AGCTAGGAACGGCGAGCT 60.756 61.111 16.62 14.72 40.43 4.09
570 586 2.583593 GCTAGGAACGGCGAGCTG 60.584 66.667 16.62 1.84 32.04 4.24
571 587 2.583593 CTAGGAACGGCGAGCTGC 60.584 66.667 16.62 2.47 45.38 5.25
613 629 0.106149 GGGCTAACCAACCGATCGAT 59.894 55.000 18.66 0.00 39.85 3.59
615 631 2.192993 GGCTAACCAACCGATCGATCG 61.193 57.143 35.03 35.03 42.18 3.69
624 642 4.320971 GATCGATCGACCCAACCG 57.679 61.111 22.06 0.00 0.00 4.44
637 655 1.949525 CCCAACCGATCCATGATTGAC 59.050 52.381 0.00 0.00 0.00 3.18
638 656 2.642427 CCAACCGATCCATGATTGACA 58.358 47.619 0.00 0.00 0.00 3.58
653 671 1.819632 GACATGACATGGACCCGGC 60.820 63.158 19.39 0.00 33.60 6.13
654 672 2.516930 CATGACATGGACCCGGCC 60.517 66.667 7.60 0.00 0.00 6.13
655 673 4.175337 ATGACATGGACCCGGCCG 62.175 66.667 21.04 21.04 0.00 6.13
659 677 3.776781 CATGGACCCGGCCGTGTA 61.777 66.667 26.12 4.77 39.57 2.90
812 830 0.391228 TTGACTGCTGCGTTGGAGTA 59.609 50.000 4.29 0.00 38.71 2.59
813 831 0.038251 TGACTGCTGCGTTGGAGTAG 60.038 55.000 2.15 2.15 38.71 2.57
814 832 0.243907 GACTGCTGCGTTGGAGTAGA 59.756 55.000 10.10 0.00 38.71 2.59
815 833 0.244994 ACTGCTGCGTTGGAGTAGAG 59.755 55.000 10.10 0.00 36.86 2.43
816 834 0.244994 CTGCTGCGTTGGAGTAGAGT 59.755 55.000 0.00 0.00 0.00 3.24
902 920 1.917782 GCGCTGAATTACGGTTGGCA 61.918 55.000 0.00 0.00 0.00 4.92
903 921 0.732571 CGCTGAATTACGGTTGGCAT 59.267 50.000 0.00 0.00 0.00 4.40
940 972 1.915489 TCCATGCAAGTAGGGTGATGT 59.085 47.619 0.00 0.00 0.00 3.06
943 975 2.183478 TGCAAGTAGGGTGATGTGTG 57.817 50.000 0.00 0.00 0.00 3.82
977 1009 0.308684 TTCAGTTTTGCAGAGCAGCG 59.691 50.000 0.00 0.00 40.61 5.18
1071 1103 2.610859 GGGAAGAGGGACAGGCCA 60.611 66.667 5.01 0.00 38.95 5.36
1072 1104 2.231380 GGGAAGAGGGACAGGCCAA 61.231 63.158 5.01 0.00 38.95 4.52
1464 1500 4.939509 ATAATTCGGACCAAACACTTCG 57.060 40.909 0.00 0.00 0.00 3.79
1504 1541 3.842126 CCGACTGACGTGCATGCG 61.842 66.667 14.09 1.59 40.78 4.73
1773 1810 3.246619 CGTAAGCTCACCTTCTTCACTC 58.753 50.000 0.00 0.00 34.95 3.51
1818 1855 5.333111 GCGGAACTTGACACGATATTAATCC 60.333 44.000 0.00 0.00 0.00 3.01
1882 1919 3.111838 CGAGGAGAATGTGAAGATCGTG 58.888 50.000 0.00 0.00 0.00 4.35
1900 1937 2.583593 GAGATGGACAGCGGCGAC 60.584 66.667 12.98 1.23 0.00 5.19
1944 1981 3.702048 GGGCGGTGACAGGCAGTA 61.702 66.667 11.68 0.00 35.71 2.74
1948 1985 1.878656 GCGGTGACAGGCAGTACTCT 61.879 60.000 0.00 0.00 0.00 3.24
1966 2003 0.109412 CTTCCGTCGAGTACCACCAC 60.109 60.000 0.00 0.00 0.00 4.16
1967 2004 1.855213 TTCCGTCGAGTACCACCACG 61.855 60.000 0.00 0.00 0.00 4.94
1968 2005 2.177531 CGTCGAGTACCACCACGG 59.822 66.667 0.00 0.00 42.50 4.94
2099 2136 4.619227 CCCACTCCCACAACGCGT 62.619 66.667 5.58 5.58 0.00 6.01
2236 2273 4.527583 GAGGCGCTGGAGAGGCAG 62.528 72.222 7.64 0.00 42.54 4.85
2532 2569 6.813649 GTGACAATTCTACACTCAAGCATCTA 59.186 38.462 0.00 0.00 0.00 1.98
2550 2587 4.991153 TCTAACAGATCGATCAACTGCT 57.009 40.909 26.47 10.65 35.38 4.24
2551 2588 4.676546 TCTAACAGATCGATCAACTGCTG 58.323 43.478 26.47 16.68 35.38 4.41
2552 2589 3.325293 AACAGATCGATCAACTGCTGT 57.675 42.857 26.47 17.30 38.14 4.40
2554 2591 4.456280 ACAGATCGATCAACTGCTGTTA 57.544 40.909 26.47 0.00 33.19 2.41
2555 2592 5.016051 ACAGATCGATCAACTGCTGTTAT 57.984 39.130 26.47 3.83 33.19 1.89
2558 2595 6.477033 ACAGATCGATCAACTGCTGTTATTAC 59.523 38.462 26.47 1.32 33.19 1.89
2559 2596 6.699204 CAGATCGATCAACTGCTGTTATTACT 59.301 38.462 26.47 0.00 34.60 2.24
2560 2597 7.223582 CAGATCGATCAACTGCTGTTATTACTT 59.776 37.037 26.47 0.00 34.60 2.24
2562 2599 7.987268 TCGATCAACTGCTGTTATTACTTAG 57.013 36.000 8.79 0.00 34.60 2.18
2564 2601 8.680001 TCGATCAACTGCTGTTATTACTTAGTA 58.320 33.333 8.79 0.00 34.60 1.82
2567 2604 9.804758 ATCAACTGCTGTTATTACTTAGTACTC 57.195 33.333 8.79 0.00 34.60 2.59
2568 2605 8.248945 TCAACTGCTGTTATTACTTAGTACTCC 58.751 37.037 8.79 0.00 34.60 3.85
2569 2606 7.713734 ACTGCTGTTATTACTTAGTACTCCA 57.286 36.000 0.00 0.00 0.00 3.86
2570 2607 8.307582 ACTGCTGTTATTACTTAGTACTCCAT 57.692 34.615 0.00 0.00 0.00 3.41
2571 2608 8.414778 ACTGCTGTTATTACTTAGTACTCCATC 58.585 37.037 0.00 0.00 0.00 3.51
2585 2625 7.414222 AGTACTCCATCTTATTTTACCGTGA 57.586 36.000 0.00 0.00 0.00 4.35
2598 2638 6.811253 TTTTACCGTGACATATCTTGCTTT 57.189 33.333 0.00 0.00 0.00 3.51
2601 2641 4.579869 ACCGTGACATATCTTGCTTTTCT 58.420 39.130 0.00 0.00 0.00 2.52
2604 2644 5.796935 CCGTGACATATCTTGCTTTTCTTTG 59.203 40.000 0.00 0.00 0.00 2.77
2623 2663 3.442441 TTTTTCAGGTGCGCAGGG 58.558 55.556 12.22 2.85 0.00 4.45
2624 2664 2.855514 TTTTTCAGGTGCGCAGGGC 61.856 57.895 12.22 1.58 43.96 5.19
2633 2673 2.371259 TGCGCAGGGCCCTGTATTA 61.371 57.895 44.45 28.65 45.24 0.98
2636 2676 1.271163 GCGCAGGGCCCTGTATTAATA 60.271 52.381 44.45 0.00 45.24 0.98
2637 2677 2.618045 GCGCAGGGCCCTGTATTAATAT 60.618 50.000 44.45 10.57 45.24 1.28
2638 2678 3.686016 CGCAGGGCCCTGTATTAATATT 58.314 45.455 44.45 9.99 45.24 1.28
2639 2679 4.839121 CGCAGGGCCCTGTATTAATATTA 58.161 43.478 44.45 0.00 45.24 0.98
2640 2680 4.876107 CGCAGGGCCCTGTATTAATATTAG 59.124 45.833 44.45 21.29 45.24 1.73
2641 2681 5.570844 CGCAGGGCCCTGTATTAATATTAGT 60.571 44.000 44.45 8.53 45.24 2.24
2642 2682 5.648092 GCAGGGCCCTGTATTAATATTAGTG 59.352 44.000 44.45 20.96 45.24 2.74
2645 2685 8.109634 CAGGGCCCTGTATTAATATTAGTGAAT 58.890 37.037 39.52 1.33 39.10 2.57
2646 2686 8.678798 AGGGCCCTGTATTAATATTAGTGAATT 58.321 33.333 28.05 0.00 0.00 2.17
2647 2687 8.739972 GGGCCCTGTATTAATATTAGTGAATTG 58.260 37.037 17.04 0.00 0.00 2.32
2648 2688 8.244113 GGCCCTGTATTAATATTAGTGAATTGC 58.756 37.037 0.00 0.00 0.00 3.56
2649 2689 9.014297 GCCCTGTATTAATATTAGTGAATTGCT 57.986 33.333 0.00 0.00 0.00 3.91
2653 2693 9.860650 TGTATTAATATTAGTGAATTGCTGGGT 57.139 29.630 0.00 0.00 0.00 4.51
2657 2697 7.716799 AATATTAGTGAATTGCTGGGTTGAA 57.283 32.000 0.00 0.00 0.00 2.69
2658 2698 4.846779 TTAGTGAATTGCTGGGTTGAAC 57.153 40.909 0.00 0.00 0.00 3.18
2659 2699 1.963515 AGTGAATTGCTGGGTTGAACC 59.036 47.619 5.62 5.62 37.60 3.62
2660 2700 0.958091 TGAATTGCTGGGTTGAACCG 59.042 50.000 8.47 0.00 39.83 4.44
2661 2701 0.388520 GAATTGCTGGGTTGAACCGC 60.389 55.000 8.47 7.77 39.83 5.68
2665 2705 4.323477 CTGGGTTGAACCGCCGGA 62.323 66.667 11.71 0.00 39.83 5.14
2667 2707 2.595172 GGGTTGAACCGCCGGAAA 60.595 61.111 11.71 0.00 39.83 3.13
2690 2742 8.752766 AAACTTCATGAAATGTTGCTTGATAG 57.247 30.769 9.88 0.00 46.80 2.08
2692 2744 7.533426 ACTTCATGAAATGTTGCTTGATAGTC 58.467 34.615 9.88 0.00 46.80 2.59
2694 2746 7.312657 TCATGAAATGTTGCTTGATAGTCTC 57.687 36.000 0.00 0.00 46.80 3.36
2697 2749 5.700832 TGAAATGTTGCTTGATAGTCTCGTT 59.299 36.000 0.00 0.00 0.00 3.85
2698 2750 5.786401 AATGTTGCTTGATAGTCTCGTTC 57.214 39.130 0.00 0.00 0.00 3.95
2716 2775 3.123804 GTTCGTGTGTGTTGATGAGAGT 58.876 45.455 0.00 0.00 0.00 3.24
2757 2816 2.159476 TGTACATACGTCCGAGTCAAGC 60.159 50.000 0.00 0.00 0.00 4.01
2836 2895 6.656632 ATATATAGGGCATATCTGTGACGG 57.343 41.667 0.00 0.00 31.96 4.79
2841 2900 1.609061 GGCATATCTGTGACGGGATGG 60.609 57.143 8.59 0.82 0.00 3.51
2844 2903 0.752658 TATCTGTGACGGGATGGCTG 59.247 55.000 0.00 0.00 0.00 4.85
2914 2973 2.028476 TGGCACAGTGTAATAAGCTCGT 60.028 45.455 1.61 0.00 0.00 4.18
2929 2988 3.257393 AGCTCGTAATTTGCTCAGTCAG 58.743 45.455 0.00 0.00 30.41 3.51
2931 2990 2.932614 CTCGTAATTTGCTCAGTCAGGG 59.067 50.000 0.00 0.00 0.00 4.45
2948 3007 1.578206 GGGCTCAAGAGTTCCAACGC 61.578 60.000 0.00 0.00 0.00 4.84
2966 3025 2.268298 CGCACTCACCCAACATACTAC 58.732 52.381 0.00 0.00 0.00 2.73
2967 3026 2.094182 CGCACTCACCCAACATACTACT 60.094 50.000 0.00 0.00 0.00 2.57
2968 3027 3.522553 GCACTCACCCAACATACTACTC 58.477 50.000 0.00 0.00 0.00 2.59
2969 3028 3.679083 GCACTCACCCAACATACTACTCC 60.679 52.174 0.00 0.00 0.00 3.85
2970 3029 3.105283 ACTCACCCAACATACTACTCCC 58.895 50.000 0.00 0.00 0.00 4.30
2971 3030 3.246021 ACTCACCCAACATACTACTCCCT 60.246 47.826 0.00 0.00 0.00 4.20
2972 3031 3.371965 TCACCCAACATACTACTCCCTC 58.628 50.000 0.00 0.00 0.00 4.30
2973 3032 3.104512 CACCCAACATACTACTCCCTCA 58.895 50.000 0.00 0.00 0.00 3.86
2974 3033 3.133003 CACCCAACATACTACTCCCTCAG 59.867 52.174 0.00 0.00 0.00 3.35
2975 3034 3.246021 ACCCAACATACTACTCCCTCAGT 60.246 47.826 0.00 0.00 39.41 3.41
2976 3035 3.775316 CCCAACATACTACTCCCTCAGTT 59.225 47.826 0.00 0.00 36.43 3.16
2977 3036 4.225267 CCCAACATACTACTCCCTCAGTTT 59.775 45.833 0.00 0.00 36.43 2.66
2978 3037 5.280521 CCCAACATACTACTCCCTCAGTTTT 60.281 44.000 0.00 0.00 36.43 2.43
2979 3038 6.238648 CCAACATACTACTCCCTCAGTTTTT 58.761 40.000 0.00 0.00 36.43 1.94
2980 3039 7.391620 CCAACATACTACTCCCTCAGTTTTTA 58.608 38.462 0.00 0.00 36.43 1.52
2981 3040 8.047310 CCAACATACTACTCCCTCAGTTTTTAT 58.953 37.037 0.00 0.00 36.43 1.40
2982 3041 9.449719 CAACATACTACTCCCTCAGTTTTTATT 57.550 33.333 0.00 0.00 36.43 1.40
2988 3047 9.102453 ACTACTCCCTCAGTTTTTATTTACTCT 57.898 33.333 0.00 0.00 36.43 3.24
2991 3050 8.877195 ACTCCCTCAGTTTTTATTTACTCTACA 58.123 33.333 0.00 0.00 26.56 2.74
2992 3051 9.892130 CTCCCTCAGTTTTTATTTACTCTACAT 57.108 33.333 0.00 0.00 0.00 2.29
3091 3150 9.733556 AACAAACCTATATGATGTGAAAGTACA 57.266 29.630 0.00 0.00 34.63 2.90
3092 3151 9.905713 ACAAACCTATATGATGTGAAAGTACAT 57.094 29.630 0.00 0.00 43.61 2.29
3110 3169 9.920946 AAAGTACATTCAATAATAGATGGGTGT 57.079 29.630 0.00 0.00 0.00 4.16
3111 3170 8.908786 AGTACATTCAATAATAGATGGGTGTG 57.091 34.615 0.00 0.00 0.00 3.82
3112 3171 8.494433 AGTACATTCAATAATAGATGGGTGTGT 58.506 33.333 0.00 0.00 0.00 3.72
3113 3172 7.807977 ACATTCAATAATAGATGGGTGTGTC 57.192 36.000 0.00 0.00 0.00 3.67
3114 3173 7.577303 ACATTCAATAATAGATGGGTGTGTCT 58.423 34.615 0.00 0.00 0.00 3.41
3115 3174 8.713971 ACATTCAATAATAGATGGGTGTGTCTA 58.286 33.333 0.00 0.00 0.00 2.59
3116 3175 9.212641 CATTCAATAATAGATGGGTGTGTCTAG 57.787 37.037 0.00 0.00 31.05 2.43
3117 3176 7.303182 TCAATAATAGATGGGTGTGTCTAGG 57.697 40.000 0.00 0.00 31.05 3.02
3118 3177 6.270000 TCAATAATAGATGGGTGTGTCTAGGG 59.730 42.308 0.00 0.00 31.05 3.53
3119 3178 1.789523 TAGATGGGTGTGTCTAGGGC 58.210 55.000 0.00 0.00 0.00 5.19
3120 3179 0.252696 AGATGGGTGTGTCTAGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
3121 3180 0.107654 GATGGGTGTGTCTAGGGCAC 60.108 60.000 10.20 10.20 37.37 5.01
3122 3181 0.840288 ATGGGTGTGTCTAGGGCACA 60.840 55.000 14.22 14.22 43.60 4.57
3123 3182 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
3124 3183 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
3125 3184 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
3126 3185 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
3127 3186 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
3128 3187 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
3129 3188 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
3130 3189 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
3255 3314 8.218338 CTTTGACCAAAGCTAATACATGATCT 57.782 34.615 9.25 0.00 40.94 2.75
3256 3315 9.330063 CTTTGACCAAAGCTAATACATGATCTA 57.670 33.333 9.25 0.00 40.94 1.98
3257 3316 9.679661 TTTGACCAAAGCTAATACATGATCTAA 57.320 29.630 0.00 0.00 0.00 2.10
3258 3317 9.679661 TTGACCAAAGCTAATACATGATCTAAA 57.320 29.630 0.00 0.00 0.00 1.85
3259 3318 9.851686 TGACCAAAGCTAATACATGATCTAAAT 57.148 29.630 0.00 0.00 0.00 1.40
3299 3358 9.791801 AATAAAGCAAGGTGATATTTTTGGTTT 57.208 25.926 14.82 14.82 46.55 3.27
3300 3359 7.728847 AAAGCAAGGTGATATTTTTGGTTTC 57.271 32.000 7.24 0.00 43.59 2.78
3301 3360 5.469479 AGCAAGGTGATATTTTTGGTTTCG 58.531 37.500 0.00 0.00 0.00 3.46
3302 3361 5.010617 AGCAAGGTGATATTTTTGGTTTCGT 59.989 36.000 0.00 0.00 0.00 3.85
3303 3362 5.344933 GCAAGGTGATATTTTTGGTTTCGTC 59.655 40.000 0.00 0.00 0.00 4.20
3304 3363 5.638596 AGGTGATATTTTTGGTTTCGTCC 57.361 39.130 0.00 0.00 0.00 4.79
3305 3364 4.461431 AGGTGATATTTTTGGTTTCGTCCC 59.539 41.667 0.00 0.00 0.00 4.46
3306 3365 4.408694 GTGATATTTTTGGTTTCGTCCCG 58.591 43.478 0.00 0.00 0.00 5.14
3307 3366 2.993449 TATTTTTGGTTTCGTCCCGC 57.007 45.000 0.00 0.00 0.00 6.13
3308 3367 1.033574 ATTTTTGGTTTCGTCCCGCA 58.966 45.000 0.00 0.00 0.00 5.69
3309 3368 0.815734 TTTTTGGTTTCGTCCCGCAA 59.184 45.000 0.00 0.00 0.00 4.85
3310 3369 1.033574 TTTTGGTTTCGTCCCGCAAT 58.966 45.000 0.00 0.00 0.00 3.56
3311 3370 1.033574 TTTGGTTTCGTCCCGCAATT 58.966 45.000 0.00 0.00 0.00 2.32
3312 3371 1.893544 TTGGTTTCGTCCCGCAATTA 58.106 45.000 0.00 0.00 0.00 1.40
3313 3372 1.893544 TGGTTTCGTCCCGCAATTAA 58.106 45.000 0.00 0.00 0.00 1.40
3314 3373 2.438411 TGGTTTCGTCCCGCAATTAAT 58.562 42.857 0.00 0.00 0.00 1.40
3315 3374 2.820787 TGGTTTCGTCCCGCAATTAATT 59.179 40.909 0.00 0.00 0.00 1.40
3316 3375 3.256136 TGGTTTCGTCCCGCAATTAATTT 59.744 39.130 0.00 0.00 0.00 1.82
3317 3376 4.239304 GGTTTCGTCCCGCAATTAATTTT 58.761 39.130 0.00 0.00 0.00 1.82
3318 3377 4.687018 GGTTTCGTCCCGCAATTAATTTTT 59.313 37.500 0.00 0.00 0.00 1.94
3336 3395 4.635833 TTTTTCCGTTAGTTTGGGTCAC 57.364 40.909 0.00 0.00 0.00 3.67
3337 3396 1.868469 TTCCGTTAGTTTGGGTCACG 58.132 50.000 0.00 0.00 0.00 4.35
3338 3397 0.752054 TCCGTTAGTTTGGGTCACGT 59.248 50.000 0.00 0.00 0.00 4.49
3339 3398 1.138661 TCCGTTAGTTTGGGTCACGTT 59.861 47.619 0.00 0.00 0.00 3.99
3340 3399 1.528161 CCGTTAGTTTGGGTCACGTTC 59.472 52.381 0.00 0.00 0.00 3.95
3341 3400 2.476821 CGTTAGTTTGGGTCACGTTCT 58.523 47.619 0.00 0.00 0.00 3.01
3342 3401 3.552684 CCGTTAGTTTGGGTCACGTTCTA 60.553 47.826 0.00 0.00 0.00 2.10
3343 3402 3.671928 CGTTAGTTTGGGTCACGTTCTAG 59.328 47.826 0.00 0.00 0.00 2.43
3344 3403 2.165319 AGTTTGGGTCACGTTCTAGC 57.835 50.000 0.00 0.00 0.00 3.42
3345 3404 1.414919 AGTTTGGGTCACGTTCTAGCA 59.585 47.619 0.00 0.00 0.00 3.49
3346 3405 1.798813 GTTTGGGTCACGTTCTAGCAG 59.201 52.381 0.00 0.00 0.00 4.24
3347 3406 1.045407 TTGGGTCACGTTCTAGCAGT 58.955 50.000 0.00 0.00 0.00 4.40
3348 3407 0.601558 TGGGTCACGTTCTAGCAGTC 59.398 55.000 0.00 0.00 0.00 3.51
3349 3408 0.108756 GGGTCACGTTCTAGCAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
3350 3409 0.456312 GGTCACGTTCTAGCAGTCCG 60.456 60.000 0.00 0.00 0.00 4.79
3351 3410 0.240411 GTCACGTTCTAGCAGTCCGT 59.760 55.000 0.00 0.00 0.00 4.69
3352 3411 0.520404 TCACGTTCTAGCAGTCCGTC 59.480 55.000 0.00 0.00 0.00 4.79
3353 3412 0.456312 CACGTTCTAGCAGTCCGTCC 60.456 60.000 0.00 0.00 0.00 4.79
3354 3413 1.226323 CGTTCTAGCAGTCCGTCCG 60.226 63.158 0.00 0.00 0.00 4.79
3355 3414 1.881602 GTTCTAGCAGTCCGTCCGT 59.118 57.895 0.00 0.00 0.00 4.69
3356 3415 0.179169 GTTCTAGCAGTCCGTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
3357 3416 0.322277 TTCTAGCAGTCCGTCCGTCT 60.322 55.000 0.00 0.00 0.00 4.18
3358 3417 0.322277 TCTAGCAGTCCGTCCGTCTT 60.322 55.000 0.00 0.00 0.00 3.01
3359 3418 1.065926 TCTAGCAGTCCGTCCGTCTTA 60.066 52.381 0.00 0.00 0.00 2.10
3360 3419 1.948145 CTAGCAGTCCGTCCGTCTTAT 59.052 52.381 0.00 0.00 0.00 1.73
3361 3420 1.183549 AGCAGTCCGTCCGTCTTATT 58.816 50.000 0.00 0.00 0.00 1.40
3362 3421 1.549170 AGCAGTCCGTCCGTCTTATTT 59.451 47.619 0.00 0.00 0.00 1.40
3363 3422 2.028385 AGCAGTCCGTCCGTCTTATTTT 60.028 45.455 0.00 0.00 0.00 1.82
3364 3423 2.093783 GCAGTCCGTCCGTCTTATTTTG 59.906 50.000 0.00 0.00 0.00 2.44
3365 3424 2.093783 CAGTCCGTCCGTCTTATTTTGC 59.906 50.000 0.00 0.00 0.00 3.68
3366 3425 2.028385 AGTCCGTCCGTCTTATTTTGCT 60.028 45.455 0.00 0.00 0.00 3.91
3367 3426 2.347755 GTCCGTCCGTCTTATTTTGCTC 59.652 50.000 0.00 0.00 0.00 4.26
3368 3427 2.028839 TCCGTCCGTCTTATTTTGCTCA 60.029 45.455 0.00 0.00 0.00 4.26
3369 3428 2.936498 CCGTCCGTCTTATTTTGCTCAT 59.064 45.455 0.00 0.00 0.00 2.90
3370 3429 3.242413 CCGTCCGTCTTATTTTGCTCATG 60.242 47.826 0.00 0.00 0.00 3.07
3371 3430 3.370978 CGTCCGTCTTATTTTGCTCATGT 59.629 43.478 0.00 0.00 0.00 3.21
3372 3431 4.565166 CGTCCGTCTTATTTTGCTCATGTA 59.435 41.667 0.00 0.00 0.00 2.29
3373 3432 5.500290 CGTCCGTCTTATTTTGCTCATGTAC 60.500 44.000 0.00 0.00 0.00 2.90
3374 3433 4.565166 TCCGTCTTATTTTGCTCATGTACG 59.435 41.667 0.00 0.00 0.00 3.67
3375 3434 4.565166 CCGTCTTATTTTGCTCATGTACGA 59.435 41.667 0.00 0.00 0.00 3.43
3376 3435 5.276395 CCGTCTTATTTTGCTCATGTACGAG 60.276 44.000 0.00 0.00 36.02 4.18
3377 3436 5.276395 CGTCTTATTTTGCTCATGTACGAGG 60.276 44.000 0.00 0.00 33.36 4.63
3378 3437 5.581085 GTCTTATTTTGCTCATGTACGAGGT 59.419 40.000 0.00 0.00 33.36 3.85
3379 3438 5.580691 TCTTATTTTGCTCATGTACGAGGTG 59.419 40.000 0.00 0.00 33.36 4.00
3380 3439 2.093306 TTTGCTCATGTACGAGGTGG 57.907 50.000 0.00 0.00 33.36 4.61
3381 3440 0.973632 TTGCTCATGTACGAGGTGGT 59.026 50.000 0.00 0.00 33.36 4.16
3382 3441 1.842052 TGCTCATGTACGAGGTGGTA 58.158 50.000 0.00 0.00 33.36 3.25
3383 3442 1.475280 TGCTCATGTACGAGGTGGTAC 59.525 52.381 0.00 0.00 42.42 3.34
3384 3443 1.749634 GCTCATGTACGAGGTGGTACT 59.250 52.381 4.25 0.00 42.53 2.73
3385 3444 2.947652 GCTCATGTACGAGGTGGTACTA 59.052 50.000 4.25 0.00 42.53 1.82
3386 3445 3.379372 GCTCATGTACGAGGTGGTACTAA 59.621 47.826 4.25 0.00 42.53 2.24
3387 3446 4.142315 GCTCATGTACGAGGTGGTACTAAA 60.142 45.833 4.25 0.00 42.53 1.85
3388 3447 5.314923 TCATGTACGAGGTGGTACTAAAC 57.685 43.478 4.25 0.00 42.53 2.01
3389 3448 3.829886 TGTACGAGGTGGTACTAAACG 57.170 47.619 4.25 0.00 42.53 3.60
3390 3449 3.146066 TGTACGAGGTGGTACTAAACGT 58.854 45.455 10.22 10.22 42.53 3.99
3391 3450 3.568007 TGTACGAGGTGGTACTAAACGTT 59.432 43.478 0.00 0.00 42.53 3.99
3392 3451 3.017265 ACGAGGTGGTACTAAACGTTG 57.983 47.619 0.00 0.00 0.00 4.10
3393 3452 2.362077 ACGAGGTGGTACTAAACGTTGT 59.638 45.455 0.00 0.00 0.00 3.32
3394 3453 2.982470 CGAGGTGGTACTAAACGTTGTC 59.018 50.000 0.00 0.00 0.00 3.18
3395 3454 3.304928 CGAGGTGGTACTAAACGTTGTCT 60.305 47.826 0.00 0.00 0.00 3.41
3396 3455 3.985925 GAGGTGGTACTAAACGTTGTCTG 59.014 47.826 0.00 0.00 0.00 3.51
3397 3456 3.638160 AGGTGGTACTAAACGTTGTCTGA 59.362 43.478 0.00 0.00 0.00 3.27
3398 3457 4.282703 AGGTGGTACTAAACGTTGTCTGAT 59.717 41.667 0.00 0.00 0.00 2.90
3399 3458 4.624452 GGTGGTACTAAACGTTGTCTGATC 59.376 45.833 0.00 0.00 0.00 2.92
3400 3459 5.467705 GTGGTACTAAACGTTGTCTGATCT 58.532 41.667 0.00 0.00 0.00 2.75
3401 3460 5.572126 GTGGTACTAAACGTTGTCTGATCTC 59.428 44.000 0.00 0.00 0.00 2.75
3402 3461 5.242171 TGGTACTAAACGTTGTCTGATCTCA 59.758 40.000 0.00 0.00 0.00 3.27
3403 3462 5.572126 GGTACTAAACGTTGTCTGATCTCAC 59.428 44.000 0.00 0.00 0.00 3.51
3404 3463 5.455056 ACTAAACGTTGTCTGATCTCACT 57.545 39.130 0.00 0.00 0.00 3.41
3405 3464 5.844004 ACTAAACGTTGTCTGATCTCACTT 58.156 37.500 0.00 0.00 0.00 3.16
3406 3465 6.281405 ACTAAACGTTGTCTGATCTCACTTT 58.719 36.000 0.00 0.00 0.00 2.66
3407 3466 6.761714 ACTAAACGTTGTCTGATCTCACTTTT 59.238 34.615 0.00 0.00 0.00 2.27
3408 3467 5.409643 AACGTTGTCTGATCTCACTTTTG 57.590 39.130 0.00 0.00 0.00 2.44
3409 3468 4.693283 ACGTTGTCTGATCTCACTTTTGA 58.307 39.130 0.00 0.00 0.00 2.69
3418 3477 2.670401 CTCACTTTTGAGTCCGTTGC 57.330 50.000 0.00 0.00 43.95 4.17
3419 3478 1.939934 CTCACTTTTGAGTCCGTTGCA 59.060 47.619 0.00 0.00 43.95 4.08
3420 3479 1.939934 TCACTTTTGAGTCCGTTGCAG 59.060 47.619 0.00 0.00 0.00 4.41
3421 3480 1.002468 CACTTTTGAGTCCGTTGCAGG 60.002 52.381 0.00 0.00 0.00 4.85
3422 3481 0.593128 CTTTTGAGTCCGTTGCAGGG 59.407 55.000 0.00 0.00 0.00 4.45
3423 3482 0.106918 TTTTGAGTCCGTTGCAGGGT 60.107 50.000 5.86 0.00 0.00 4.34
3424 3483 0.759959 TTTGAGTCCGTTGCAGGGTA 59.240 50.000 5.86 0.00 0.00 3.69
3425 3484 0.981183 TTGAGTCCGTTGCAGGGTAT 59.019 50.000 5.86 0.00 0.00 2.73
3426 3485 0.981183 TGAGTCCGTTGCAGGGTATT 59.019 50.000 5.86 0.00 0.00 1.89
3427 3486 1.349688 TGAGTCCGTTGCAGGGTATTT 59.650 47.619 5.86 0.00 0.00 1.40
3428 3487 2.224670 TGAGTCCGTTGCAGGGTATTTT 60.225 45.455 5.86 0.00 0.00 1.82
3429 3488 2.159382 AGTCCGTTGCAGGGTATTTTG 58.841 47.619 5.86 0.00 0.00 2.44
3430 3489 1.201414 GTCCGTTGCAGGGTATTTTGG 59.799 52.381 5.86 0.00 0.00 3.28
3431 3490 0.530288 CCGTTGCAGGGTATTTTGGG 59.470 55.000 0.00 0.00 0.00 4.12
3432 3491 1.540267 CGTTGCAGGGTATTTTGGGA 58.460 50.000 0.00 0.00 0.00 4.37
3433 3492 1.201414 CGTTGCAGGGTATTTTGGGAC 59.799 52.381 0.00 0.00 0.00 4.46
3434 3493 2.525368 GTTGCAGGGTATTTTGGGACT 58.475 47.619 0.00 0.00 0.00 3.85
3435 3494 2.214376 TGCAGGGTATTTTGGGACTG 57.786 50.000 0.00 0.00 0.00 3.51
3436 3495 1.707989 TGCAGGGTATTTTGGGACTGA 59.292 47.619 0.00 0.00 0.00 3.41
3437 3496 2.290896 TGCAGGGTATTTTGGGACTGAG 60.291 50.000 0.00 0.00 0.00 3.35
3438 3497 2.369394 CAGGGTATTTTGGGACTGAGC 58.631 52.381 0.00 0.00 0.00 4.26
3439 3498 1.285078 AGGGTATTTTGGGACTGAGCC 59.715 52.381 0.00 0.00 0.00 4.70
3440 3499 1.285078 GGGTATTTTGGGACTGAGCCT 59.715 52.381 0.00 0.00 0.00 4.58
3441 3500 2.369394 GGTATTTTGGGACTGAGCCTG 58.631 52.381 0.00 0.00 0.00 4.85
3442 3501 2.290960 GGTATTTTGGGACTGAGCCTGT 60.291 50.000 0.00 0.00 0.00 4.00
3443 3502 2.683211 ATTTTGGGACTGAGCCTGTT 57.317 45.000 0.00 0.00 0.00 3.16
3444 3503 2.452600 TTTTGGGACTGAGCCTGTTT 57.547 45.000 0.00 0.00 0.00 2.83
3445 3504 1.981256 TTTGGGACTGAGCCTGTTTC 58.019 50.000 0.00 0.00 0.00 2.78
3446 3505 0.250295 TTGGGACTGAGCCTGTTTCG 60.250 55.000 0.00 0.00 0.00 3.46
3447 3506 1.371558 GGGACTGAGCCTGTTTCGT 59.628 57.895 0.00 0.00 0.00 3.85
3448 3507 0.606604 GGGACTGAGCCTGTTTCGTA 59.393 55.000 0.00 0.00 0.00 3.43
3449 3508 1.672145 GGGACTGAGCCTGTTTCGTAC 60.672 57.143 0.00 0.00 0.00 3.67
3450 3509 1.000506 GGACTGAGCCTGTTTCGTACA 59.999 52.381 0.00 0.00 34.95 2.90
3464 3523 7.807687 TGTTTCGTACAGATACTAAAAGAGC 57.192 36.000 0.00 0.00 30.30 4.09
3465 3524 6.810182 TGTTTCGTACAGATACTAAAAGAGCC 59.190 38.462 0.00 0.00 30.30 4.70
3466 3525 5.511234 TCGTACAGATACTAAAAGAGCCC 57.489 43.478 0.00 0.00 0.00 5.19
3467 3526 4.951715 TCGTACAGATACTAAAAGAGCCCA 59.048 41.667 0.00 0.00 0.00 5.36
3468 3527 5.041940 CGTACAGATACTAAAAGAGCCCAC 58.958 45.833 0.00 0.00 0.00 4.61
3469 3528 5.393787 CGTACAGATACTAAAAGAGCCCACA 60.394 44.000 0.00 0.00 0.00 4.17
3470 3529 5.700402 ACAGATACTAAAAGAGCCCACAT 57.300 39.130 0.00 0.00 0.00 3.21
3471 3530 5.431765 ACAGATACTAAAAGAGCCCACATG 58.568 41.667 0.00 0.00 0.00 3.21
3472 3531 5.189736 ACAGATACTAAAAGAGCCCACATGA 59.810 40.000 0.00 0.00 0.00 3.07
3473 3532 5.757320 CAGATACTAAAAGAGCCCACATGAG 59.243 44.000 0.00 0.00 0.00 2.90
3474 3533 5.426833 AGATACTAAAAGAGCCCACATGAGT 59.573 40.000 0.00 0.00 0.00 3.41
3475 3534 3.944087 ACTAAAAGAGCCCACATGAGTC 58.056 45.455 0.00 0.00 0.00 3.36
3476 3535 2.957402 AAAAGAGCCCACATGAGTCA 57.043 45.000 0.00 0.00 0.00 3.41
3477 3536 3.446442 AAAAGAGCCCACATGAGTCAT 57.554 42.857 0.00 0.00 0.00 3.06
3478 3537 2.414994 AAGAGCCCACATGAGTCATG 57.585 50.000 27.88 27.88 46.18 3.07
3479 3538 0.107312 AGAGCCCACATGAGTCATGC 60.107 55.000 29.10 17.25 44.80 4.06
3480 3539 0.393402 GAGCCCACATGAGTCATGCA 60.393 55.000 29.10 0.00 44.80 3.96
3481 3540 0.393944 AGCCCACATGAGTCATGCAG 60.394 55.000 29.10 21.83 44.80 4.41
3482 3541 1.381928 GCCCACATGAGTCATGCAGG 61.382 60.000 29.10 27.80 44.80 4.85
3483 3542 0.034767 CCCACATGAGTCATGCAGGT 60.035 55.000 29.10 10.26 44.80 4.00
3484 3543 1.376543 CCACATGAGTCATGCAGGTC 58.623 55.000 29.10 0.00 44.80 3.85
3485 3544 1.339342 CCACATGAGTCATGCAGGTCA 60.339 52.381 29.10 0.00 44.80 4.02
3486 3545 2.007608 CACATGAGTCATGCAGGTCAG 58.992 52.381 29.10 7.10 44.80 3.51
3487 3546 1.015109 CATGAGTCATGCAGGTCAGC 58.985 55.000 19.79 0.00 35.02 4.26
3488 3547 0.910338 ATGAGTCATGCAGGTCAGCT 59.090 50.000 4.39 0.00 34.99 4.24
3489 3548 0.036671 TGAGTCATGCAGGTCAGCTG 60.037 55.000 7.63 7.63 34.99 4.24
3490 3549 0.743701 GAGTCATGCAGGTCAGCTGG 60.744 60.000 15.13 0.00 34.99 4.85
3491 3550 1.196766 AGTCATGCAGGTCAGCTGGA 61.197 55.000 15.13 2.46 34.99 3.86
3492 3551 0.107312 GTCATGCAGGTCAGCTGGAT 60.107 55.000 15.13 4.81 33.14 3.41
3493 3552 0.622136 TCATGCAGGTCAGCTGGATT 59.378 50.000 15.13 0.00 30.48 3.01
3494 3553 1.005097 TCATGCAGGTCAGCTGGATTT 59.995 47.619 15.13 0.00 30.48 2.17
3495 3554 1.134367 CATGCAGGTCAGCTGGATTTG 59.866 52.381 15.13 8.77 30.48 2.32
3496 3555 0.609957 TGCAGGTCAGCTGGATTTGG 60.610 55.000 15.13 0.29 34.99 3.28
3497 3556 1.318158 GCAGGTCAGCTGGATTTGGG 61.318 60.000 15.13 0.00 0.00 4.12
3498 3557 1.000396 AGGTCAGCTGGATTTGGGC 60.000 57.895 15.13 0.00 0.00 5.36
3499 3558 2.054453 GGTCAGCTGGATTTGGGCC 61.054 63.158 15.13 0.00 0.00 5.80
3500 3559 1.000396 GTCAGCTGGATTTGGGCCT 60.000 57.895 15.13 0.00 0.00 5.19
3501 3560 0.613012 GTCAGCTGGATTTGGGCCTT 60.613 55.000 15.13 0.00 0.00 4.35
3502 3561 0.612732 TCAGCTGGATTTGGGCCTTG 60.613 55.000 15.13 0.00 0.00 3.61
3503 3562 1.986210 AGCTGGATTTGGGCCTTGC 60.986 57.895 4.53 0.00 0.00 4.01
3517 3576 2.896745 CCTTGCCAGGCCAAATTATC 57.103 50.000 9.64 0.00 31.53 1.75
3518 3577 1.413812 CCTTGCCAGGCCAAATTATCC 59.586 52.381 9.64 0.00 31.53 2.59
3519 3578 2.391678 CTTGCCAGGCCAAATTATCCT 58.608 47.619 9.64 0.00 0.00 3.24
3520 3579 1.779221 TGCCAGGCCAAATTATCCTG 58.221 50.000 9.64 11.54 45.24 3.86
3528 3587 2.465813 CCAAATTATCCTGGCCAACCA 58.534 47.619 7.01 0.00 46.51 3.67
3540 3599 3.814268 CAACCAAGGCGGCCGATG 61.814 66.667 33.48 23.15 39.03 3.84
3544 3603 3.746889 CAAGGCGGCCGATGCAAA 61.747 61.111 33.48 0.00 40.13 3.68
3545 3604 2.988684 AAGGCGGCCGATGCAAAA 60.989 55.556 33.48 0.00 40.13 2.44
3546 3605 2.569354 AAGGCGGCCGATGCAAAAA 61.569 52.632 33.48 0.00 40.13 1.94
3564 3623 1.247567 AAAAATCTGGCTGGTGGACG 58.752 50.000 0.00 0.00 0.00 4.79
3565 3624 0.400213 AAAATCTGGCTGGTGGACGA 59.600 50.000 0.00 0.00 0.00 4.20
3566 3625 0.321653 AAATCTGGCTGGTGGACGAC 60.322 55.000 0.00 0.00 0.00 4.34
3567 3626 1.194781 AATCTGGCTGGTGGACGACT 61.195 55.000 0.00 0.00 0.00 4.18
3568 3627 1.194781 ATCTGGCTGGTGGACGACTT 61.195 55.000 0.00 0.00 0.00 3.01
3569 3628 1.669115 CTGGCTGGTGGACGACTTG 60.669 63.158 0.00 0.00 0.00 3.16
3570 3629 2.099652 CTGGCTGGTGGACGACTTGA 62.100 60.000 0.00 0.00 0.00 3.02
3571 3630 1.070786 GGCTGGTGGACGACTTGAA 59.929 57.895 0.00 0.00 0.00 2.69
3572 3631 1.228657 GGCTGGTGGACGACTTGAAC 61.229 60.000 0.00 0.00 0.00 3.18
3573 3632 0.531974 GCTGGTGGACGACTTGAACA 60.532 55.000 0.00 0.00 0.00 3.18
3574 3633 1.217882 CTGGTGGACGACTTGAACAC 58.782 55.000 0.00 0.00 0.00 3.32
3575 3634 0.537653 TGGTGGACGACTTGAACACA 59.462 50.000 0.00 0.00 33.91 3.72
3576 3635 0.935196 GGTGGACGACTTGAACACAC 59.065 55.000 0.00 0.00 33.91 3.82
3577 3636 1.647346 GTGGACGACTTGAACACACA 58.353 50.000 0.00 0.00 32.58 3.72
3578 3637 2.004017 GTGGACGACTTGAACACACAA 58.996 47.619 0.00 0.00 32.58 3.33
3579 3638 2.004017 TGGACGACTTGAACACACAAC 58.996 47.619 0.00 0.00 0.00 3.32
3580 3639 1.329599 GGACGACTTGAACACACAACC 59.670 52.381 0.00 0.00 0.00 3.77
3581 3640 2.277084 GACGACTTGAACACACAACCT 58.723 47.619 0.00 0.00 0.00 3.50
3582 3641 3.450578 GACGACTTGAACACACAACCTA 58.549 45.455 0.00 0.00 0.00 3.08
3583 3642 3.864243 ACGACTTGAACACACAACCTAA 58.136 40.909 0.00 0.00 0.00 2.69
3584 3643 3.619929 ACGACTTGAACACACAACCTAAC 59.380 43.478 0.00 0.00 0.00 2.34
3585 3644 3.001939 CGACTTGAACACACAACCTAACC 59.998 47.826 0.00 0.00 0.00 2.85
3586 3645 3.942748 GACTTGAACACACAACCTAACCA 59.057 43.478 0.00 0.00 0.00 3.67
3587 3646 4.532834 ACTTGAACACACAACCTAACCAT 58.467 39.130 0.00 0.00 0.00 3.55
3588 3647 4.953579 ACTTGAACACACAACCTAACCATT 59.046 37.500 0.00 0.00 0.00 3.16
3589 3648 5.067283 ACTTGAACACACAACCTAACCATTC 59.933 40.000 0.00 0.00 0.00 2.67
3590 3649 3.562141 TGAACACACAACCTAACCATTCG 59.438 43.478 0.00 0.00 0.00 3.34
3591 3650 3.478857 ACACACAACCTAACCATTCGA 57.521 42.857 0.00 0.00 0.00 3.71
3592 3651 3.135994 ACACACAACCTAACCATTCGAC 58.864 45.455 0.00 0.00 0.00 4.20
3593 3652 3.135225 CACACAACCTAACCATTCGACA 58.865 45.455 0.00 0.00 0.00 4.35
3594 3653 3.186409 CACACAACCTAACCATTCGACAG 59.814 47.826 0.00 0.00 0.00 3.51
3595 3654 2.742053 CACAACCTAACCATTCGACAGG 59.258 50.000 0.88 0.88 0.00 4.00
3596 3655 2.370849 ACAACCTAACCATTCGACAGGT 59.629 45.455 2.19 2.19 41.38 4.00
3597 3656 2.742053 CAACCTAACCATTCGACAGGTG 59.258 50.000 8.62 0.20 39.54 4.00
3598 3657 2.253610 ACCTAACCATTCGACAGGTGA 58.746 47.619 8.62 0.87 38.20 4.02
3599 3658 2.838202 ACCTAACCATTCGACAGGTGAT 59.162 45.455 8.62 0.00 38.20 3.06
3600 3659 3.198068 CCTAACCATTCGACAGGTGATG 58.802 50.000 8.62 0.00 38.37 3.07
3602 3661 2.099141 ACCATTCGACAGGTGATGTG 57.901 50.000 7.15 0.00 44.17 3.21
3603 3662 1.347707 ACCATTCGACAGGTGATGTGT 59.652 47.619 7.15 0.00 44.17 3.72
3604 3663 2.002586 CCATTCGACAGGTGATGTGTC 58.997 52.381 0.00 0.00 44.17 3.67
3608 3667 3.123674 GACAGGTGATGTGTCGACC 57.876 57.895 14.12 5.06 44.17 4.79
3609 3668 0.317160 GACAGGTGATGTGTCGACCA 59.683 55.000 14.12 11.06 44.17 4.02
3610 3669 0.756294 ACAGGTGATGTGTCGACCAA 59.244 50.000 14.12 0.76 41.91 3.67
3611 3670 1.148310 CAGGTGATGTGTCGACCAAC 58.852 55.000 14.12 6.27 31.77 3.77
3612 3671 1.048601 AGGTGATGTGTCGACCAACT 58.951 50.000 14.12 8.72 31.77 3.16
3613 3672 2.029380 CAGGTGATGTGTCGACCAACTA 60.029 50.000 14.12 0.00 31.77 2.24
3614 3673 2.631062 AGGTGATGTGTCGACCAACTAA 59.369 45.455 14.12 0.00 31.77 2.24
3615 3674 2.993899 GGTGATGTGTCGACCAACTAAG 59.006 50.000 14.12 0.00 0.00 2.18
3616 3675 2.412089 GTGATGTGTCGACCAACTAAGC 59.588 50.000 14.12 0.00 0.00 3.09
3617 3676 2.299013 TGATGTGTCGACCAACTAAGCT 59.701 45.455 14.12 0.00 0.00 3.74
3618 3677 2.433868 TGTGTCGACCAACTAAGCTC 57.566 50.000 14.12 0.00 0.00 4.09
3619 3678 1.335597 TGTGTCGACCAACTAAGCTCG 60.336 52.381 14.12 0.00 0.00 5.03
3620 3679 1.068748 GTGTCGACCAACTAAGCTCGA 60.069 52.381 14.12 0.00 32.89 4.04
3621 3680 1.816835 TGTCGACCAACTAAGCTCGAT 59.183 47.619 14.12 0.00 37.48 3.59
3622 3681 2.159421 TGTCGACCAACTAAGCTCGATC 60.159 50.000 14.12 0.00 37.48 3.69
3623 3682 1.063616 TCGACCAACTAAGCTCGATCG 59.936 52.381 9.36 9.36 30.41 3.69
3624 3683 1.201343 GACCAACTAAGCTCGATCGC 58.799 55.000 11.09 0.00 0.00 4.58
3625 3684 0.530744 ACCAACTAAGCTCGATCGCA 59.469 50.000 11.09 0.00 0.00 5.10
3626 3685 1.067142 ACCAACTAAGCTCGATCGCAA 60.067 47.619 11.09 0.00 0.00 4.85
3627 3686 1.590238 CCAACTAAGCTCGATCGCAAG 59.410 52.381 11.09 4.69 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.188786 GCTGCCGCTGGAACTACG 61.189 66.667 0.00 0.00 0.00 3.51
66 67 0.946221 GCACTAATCATCGGGAGGCG 60.946 60.000 0.00 0.00 0.00 5.52
67 68 0.946221 CGCACTAATCATCGGGAGGC 60.946 60.000 0.00 0.00 0.00 4.70
68 69 0.673985 TCGCACTAATCATCGGGAGG 59.326 55.000 0.00 0.00 0.00 4.30
69 70 1.338337 ACTCGCACTAATCATCGGGAG 59.662 52.381 0.00 0.00 42.38 4.30
70 71 1.399714 ACTCGCACTAATCATCGGGA 58.600 50.000 0.00 0.00 0.00 5.14
71 72 2.293677 AGTACTCGCACTAATCATCGGG 59.706 50.000 0.00 0.00 0.00 5.14
72 73 3.003378 TCAGTACTCGCACTAATCATCGG 59.997 47.826 0.00 0.00 0.00 4.18
73 74 3.969352 GTCAGTACTCGCACTAATCATCG 59.031 47.826 0.00 0.00 0.00 3.84
111 114 1.823899 GCATCCATCCACCGAACCC 60.824 63.158 0.00 0.00 0.00 4.11
173 176 1.197812 ATCCAAGCATTTCCTTGCCC 58.802 50.000 0.00 0.00 43.83 5.36
194 197 5.420739 TGGATTTTAATTAGGCCACAAGGAC 59.579 40.000 5.01 0.00 46.64 3.85
215 227 2.442212 TTACGCGATCACTGTTTGGA 57.558 45.000 15.93 0.00 0.00 3.53
234 246 6.855763 TGTGCTGGATTTCTGGATTTTATT 57.144 33.333 0.00 0.00 0.00 1.40
307 319 3.524095 TGTCATGTCAGGGTTGGATTT 57.476 42.857 0.00 0.00 0.00 2.17
315 327 1.536072 CGTACGGATGTCATGTCAGGG 60.536 57.143 7.57 0.00 0.00 4.45
348 360 2.290134 ACTGCAGATCAGATGCTTGTGT 60.290 45.455 23.35 0.00 45.72 3.72
349 361 2.357075 ACTGCAGATCAGATGCTTGTG 58.643 47.619 23.35 0.00 45.72 3.33
350 362 2.783609 ACTGCAGATCAGATGCTTGT 57.216 45.000 23.35 3.73 45.72 3.16
351 363 6.856135 TTTATACTGCAGATCAGATGCTTG 57.144 37.500 23.35 3.21 45.72 4.01
381 397 4.753107 ACAAAACCACGAACTACTACATGG 59.247 41.667 0.00 0.00 0.00 3.66
382 398 5.694910 AGACAAAACCACGAACTACTACATG 59.305 40.000 0.00 0.00 0.00 3.21
383 399 5.850614 AGACAAAACCACGAACTACTACAT 58.149 37.500 0.00 0.00 0.00 2.29
384 400 5.266733 AGACAAAACCACGAACTACTACA 57.733 39.130 0.00 0.00 0.00 2.74
470 486 6.894828 TCTGTTTCTTTAATGGCGTTAGTTC 58.105 36.000 0.00 0.00 0.00 3.01
496 512 4.951254 GAGAATCTCAAGCTAAGTACCCC 58.049 47.826 5.22 0.00 0.00 4.95
524 540 4.452733 CTCAGGTTCGTCCCCGGC 62.453 72.222 0.00 0.00 36.75 6.13
527 543 1.889530 CTGTCCTCAGGTTCGTCCCC 61.890 65.000 0.00 0.00 37.97 4.81
585 601 2.202756 GGTTAGCCCTCGTGAGCG 60.203 66.667 0.00 0.00 39.92 5.03
613 629 0.973496 TCATGGATCGGTTGGGTCGA 60.973 55.000 0.00 0.00 41.04 4.20
615 631 1.949525 CAATCATGGATCGGTTGGGTC 59.050 52.381 0.00 0.00 0.00 4.46
637 655 2.516930 GGCCGGGTCCATGTCATG 60.517 66.667 2.18 5.79 0.00 3.07
638 656 4.175337 CGGCCGGGTCCATGTCAT 62.175 66.667 20.10 0.00 0.00 3.06
655 673 1.370414 ACGCACGTACACGGTACAC 60.370 57.895 6.72 3.34 44.95 2.90
656 674 1.370293 CACGCACGTACACGGTACA 60.370 57.895 6.72 0.00 44.95 2.90
657 675 2.709999 GCACGCACGTACACGGTAC 61.710 63.158 6.72 0.00 44.95 3.34
658 676 2.428902 GCACGCACGTACACGGTA 60.429 61.111 6.72 0.00 44.95 4.02
659 677 4.572305 TGCACGCACGTACACGGT 62.572 61.111 6.72 0.00 44.95 4.83
802 820 1.268133 CGAGCTACTCTACTCCAACGC 60.268 57.143 0.00 0.00 0.00 4.84
812 830 3.141488 CCACCGCCGAGCTACTCT 61.141 66.667 0.00 0.00 0.00 3.24
813 831 3.450115 ACCACCGCCGAGCTACTC 61.450 66.667 0.00 0.00 0.00 2.59
814 832 3.760035 CACCACCGCCGAGCTACT 61.760 66.667 0.00 0.00 0.00 2.57
815 833 4.814294 CCACCACCGCCGAGCTAC 62.814 72.222 0.00 0.00 0.00 3.58
857 875 5.552870 ATCTATGGTTAGCACCTAACAGG 57.447 43.478 14.82 0.00 45.57 4.00
940 972 2.604644 AAACGCAACGTGCATGCACA 62.605 50.000 40.95 12.77 45.36 4.57
943 975 1.599422 CTGAAACGCAACGTGCATGC 61.599 55.000 11.82 11.82 45.36 4.06
962 994 1.208614 CTCCGCTGCTCTGCAAAAC 59.791 57.895 0.00 0.00 38.41 2.43
977 1009 1.221021 CCTTAGCCAACCGACCTCC 59.779 63.158 0.00 0.00 0.00 4.30
1341 1373 1.949257 CACCTTGCGGGAAGACAAC 59.051 57.895 11.11 0.00 38.76 3.32
1342 1374 1.896660 GCACCTTGCGGGAAGACAA 60.897 57.895 11.11 0.00 38.76 3.18
1464 1500 1.660333 CCAAGAACGCGAGCAGAAAAC 60.660 52.381 15.93 0.00 0.00 2.43
1566 1603 3.635268 CTTCCTCACCAGCTGCCCC 62.635 68.421 8.66 0.00 0.00 5.80
1741 1778 3.059051 GGTGAGCTTACGTAGGACGATAG 60.059 52.174 9.15 0.00 46.05 2.08
1742 1779 2.874701 GGTGAGCTTACGTAGGACGATA 59.125 50.000 9.15 0.00 46.05 2.92
1818 1855 3.749665 TGTTCCAAGCCCAAATTCAAG 57.250 42.857 0.00 0.00 0.00 3.02
1882 1919 3.838271 TCGCCGCTGTCCATCTCC 61.838 66.667 0.00 0.00 0.00 3.71
1933 1970 0.888619 CGGAAGAGTACTGCCTGTCA 59.111 55.000 0.00 0.00 39.67 3.58
1948 1985 1.855213 CGTGGTGGTACTCGACGGAA 61.855 60.000 14.19 0.00 46.80 4.30
2079 2116 2.358737 CGTTGTGGGAGTGGGAGC 60.359 66.667 0.00 0.00 0.00 4.70
2335 2372 2.035442 GTGGAAGAAGGGCGACTGC 61.035 63.158 0.00 0.00 41.71 4.40
2380 2417 2.430921 GTCGACGTGTCCAGCCTG 60.431 66.667 0.00 0.00 0.00 4.85
2532 2569 3.325293 ACAGCAGTTGATCGATCTGTT 57.675 42.857 25.02 11.26 31.51 3.16
2558 2595 9.245962 CACGGTAAAATAAGATGGAGTACTAAG 57.754 37.037 0.00 0.00 0.00 2.18
2559 2596 8.970020 TCACGGTAAAATAAGATGGAGTACTAA 58.030 33.333 0.00 0.00 0.00 2.24
2560 2597 8.408601 GTCACGGTAAAATAAGATGGAGTACTA 58.591 37.037 0.00 0.00 0.00 1.82
2562 2599 7.037438 TGTCACGGTAAAATAAGATGGAGTAC 58.963 38.462 0.00 0.00 0.00 2.73
2564 2601 6.045072 TGTCACGGTAAAATAAGATGGAGT 57.955 37.500 0.00 0.00 0.00 3.85
2567 2604 8.833231 AGATATGTCACGGTAAAATAAGATGG 57.167 34.615 0.00 0.00 0.00 3.51
2569 2606 8.774586 GCAAGATATGTCACGGTAAAATAAGAT 58.225 33.333 0.00 0.00 0.00 2.40
2570 2607 7.985184 AGCAAGATATGTCACGGTAAAATAAGA 59.015 33.333 0.00 0.00 0.00 2.10
2571 2608 8.142994 AGCAAGATATGTCACGGTAAAATAAG 57.857 34.615 0.00 0.00 0.00 1.73
2580 2620 5.551760 AAGAAAAGCAAGATATGTCACGG 57.448 39.130 0.00 0.00 0.00 4.94
2623 2663 9.014297 AGCAATTCACTAATATTAATACAGGGC 57.986 33.333 0.00 0.00 0.00 5.19
2633 2673 7.363793 GGTTCAACCCAGCAATTCACTAATATT 60.364 37.037 0.00 0.00 30.04 1.28
2636 2676 4.220602 GGTTCAACCCAGCAATTCACTAAT 59.779 41.667 0.00 0.00 30.04 1.73
2637 2677 3.572255 GGTTCAACCCAGCAATTCACTAA 59.428 43.478 0.00 0.00 30.04 2.24
2638 2678 3.153919 GGTTCAACCCAGCAATTCACTA 58.846 45.455 0.00 0.00 30.04 2.74
2639 2679 1.963515 GGTTCAACCCAGCAATTCACT 59.036 47.619 0.00 0.00 30.04 3.41
2640 2680 1.335872 CGGTTCAACCCAGCAATTCAC 60.336 52.381 0.00 0.00 33.75 3.18
2641 2681 0.958091 CGGTTCAACCCAGCAATTCA 59.042 50.000 0.00 0.00 33.75 2.57
2642 2682 0.388520 GCGGTTCAACCCAGCAATTC 60.389 55.000 0.00 0.00 33.75 2.17
2645 2685 2.909965 GGCGGTTCAACCCAGCAA 60.910 61.111 8.53 0.00 33.75 3.91
2648 2688 3.835790 TTCCGGCGGTTCAACCCAG 62.836 63.158 27.32 0.00 33.75 4.45
2649 2689 3.417167 TTTCCGGCGGTTCAACCCA 62.417 57.895 27.32 0.00 33.75 4.51
2651 2691 1.449726 AAGTTTCCGGCGGTTCAACC 61.450 55.000 27.32 5.47 34.05 3.77
2652 2692 0.040692 GAAGTTTCCGGCGGTTCAAC 60.041 55.000 27.32 24.22 0.00 3.18
2653 2693 0.464013 TGAAGTTTCCGGCGGTTCAA 60.464 50.000 27.32 14.46 0.00 2.69
2654 2694 0.250553 ATGAAGTTTCCGGCGGTTCA 60.251 50.000 25.53 25.53 0.00 3.18
2655 2695 0.168128 CATGAAGTTTCCGGCGGTTC 59.832 55.000 27.32 21.52 0.00 3.62
2657 2697 0.250553 TTCATGAAGTTTCCGGCGGT 60.251 50.000 27.32 5.58 0.00 5.68
2658 2698 0.878416 TTTCATGAAGTTTCCGGCGG 59.122 50.000 22.51 22.51 0.00 6.13
2659 2699 2.095263 ACATTTCATGAAGTTTCCGGCG 60.095 45.455 8.41 0.00 0.00 6.46
2660 2700 3.575965 ACATTTCATGAAGTTTCCGGC 57.424 42.857 8.41 0.00 0.00 6.13
2661 2701 3.674753 GCAACATTTCATGAAGTTTCCGG 59.325 43.478 8.41 0.00 0.00 5.14
2665 2705 8.362639 ACTATCAAGCAACATTTCATGAAGTTT 58.637 29.630 8.41 0.00 0.00 2.66
2667 2707 7.392673 AGACTATCAAGCAACATTTCATGAAGT 59.607 33.333 8.41 2.46 0.00 3.01
2690 2742 1.552226 TCAACACACACGAACGAGAC 58.448 50.000 0.14 0.00 0.00 3.36
2692 2744 2.124122 TCATCAACACACACGAACGAG 58.876 47.619 0.14 0.00 0.00 4.18
2694 2746 2.124122 TCTCATCAACACACACGAACG 58.876 47.619 0.00 0.00 0.00 3.95
2697 2749 3.181480 TGAACTCTCATCAACACACACGA 60.181 43.478 0.00 0.00 0.00 4.35
2698 2750 3.123050 TGAACTCTCATCAACACACACG 58.877 45.455 0.00 0.00 0.00 4.49
2716 2775 4.408276 ACAACACTCTACTAGGCTCTGAA 58.592 43.478 0.00 0.00 0.00 3.02
2771 2830 5.585047 GGTACTTGACTCGAATAGCCAAAAT 59.415 40.000 0.00 0.00 0.00 1.82
2780 2839 4.602340 ACACTTGGTACTTGACTCGAAT 57.398 40.909 0.00 0.00 0.00 3.34
2812 2871 6.042093 CCCGTCACAGATATGCCCTATATATT 59.958 42.308 0.00 0.00 32.09 1.28
2816 2875 3.096852 CCCGTCACAGATATGCCCTATA 58.903 50.000 0.00 0.00 0.00 1.31
2835 2894 4.564110 GTACCCCGCAGCCATCCC 62.564 72.222 0.00 0.00 0.00 3.85
2836 2895 1.692173 TTAGTACCCCGCAGCCATCC 61.692 60.000 0.00 0.00 0.00 3.51
2841 2900 0.819582 TACACTTAGTACCCCGCAGC 59.180 55.000 0.00 0.00 0.00 5.25
2844 2903 5.520376 TCTAATTACACTTAGTACCCCGC 57.480 43.478 0.00 0.00 30.91 6.13
2899 2958 6.816640 TGAGCAAATTACGAGCTTATTACACT 59.183 34.615 0.00 0.00 39.02 3.55
2914 2973 2.305635 TGAGCCCTGACTGAGCAAATTA 59.694 45.455 0.00 0.00 0.00 1.40
2929 2988 1.578206 GCGTTGGAACTCTTGAGCCC 61.578 60.000 0.00 0.76 0.00 5.19
2931 2990 0.235926 GTGCGTTGGAACTCTTGAGC 59.764 55.000 0.00 0.00 0.00 4.26
2948 3007 3.118738 GGGAGTAGTATGTTGGGTGAGTG 60.119 52.174 0.00 0.00 0.00 3.51
2966 3025 9.892130 ATGTAGAGTAAATAAAAACTGAGGGAG 57.108 33.333 0.00 0.00 0.00 4.30
3065 3124 9.733556 TGTACTTTCACATCATATAGGTTTGTT 57.266 29.630 0.00 0.00 0.00 2.83
3066 3125 9.905713 ATGTACTTTCACATCATATAGGTTTGT 57.094 29.630 0.00 0.00 33.89 2.83
3084 3143 9.920946 ACACCCATCTATTATTGAATGTACTTT 57.079 29.630 0.00 0.00 0.00 2.66
3085 3144 9.342308 CACACCCATCTATTATTGAATGTACTT 57.658 33.333 0.00 0.00 0.00 2.24
3086 3145 8.494433 ACACACCCATCTATTATTGAATGTACT 58.506 33.333 0.00 0.00 0.00 2.73
3087 3146 8.677148 ACACACCCATCTATTATTGAATGTAC 57.323 34.615 0.00 0.00 0.00 2.90
3088 3147 8.713971 AGACACACCCATCTATTATTGAATGTA 58.286 33.333 0.00 0.00 0.00 2.29
3089 3148 7.577303 AGACACACCCATCTATTATTGAATGT 58.423 34.615 0.00 0.00 0.00 2.71
3090 3149 9.212641 CTAGACACACCCATCTATTATTGAATG 57.787 37.037 0.00 0.00 0.00 2.67
3091 3150 8.378565 CCTAGACACACCCATCTATTATTGAAT 58.621 37.037 0.00 0.00 0.00 2.57
3092 3151 7.202093 CCCTAGACACACCCATCTATTATTGAA 60.202 40.741 0.00 0.00 0.00 2.69
3093 3152 6.270000 CCCTAGACACACCCATCTATTATTGA 59.730 42.308 0.00 0.00 0.00 2.57
3094 3153 6.467677 CCCTAGACACACCCATCTATTATTG 58.532 44.000 0.00 0.00 0.00 1.90
3095 3154 5.013183 GCCCTAGACACACCCATCTATTATT 59.987 44.000 0.00 0.00 0.00 1.40
3096 3155 4.532521 GCCCTAGACACACCCATCTATTAT 59.467 45.833 0.00 0.00 0.00 1.28
3097 3156 3.901844 GCCCTAGACACACCCATCTATTA 59.098 47.826 0.00 0.00 0.00 0.98
3098 3157 2.706190 GCCCTAGACACACCCATCTATT 59.294 50.000 0.00 0.00 0.00 1.73
3099 3158 2.330216 GCCCTAGACACACCCATCTAT 58.670 52.381 0.00 0.00 0.00 1.98
3100 3159 1.007842 TGCCCTAGACACACCCATCTA 59.992 52.381 0.00 0.00 0.00 1.98
3101 3160 0.252696 TGCCCTAGACACACCCATCT 60.253 55.000 0.00 0.00 0.00 2.90
3102 3161 0.107654 GTGCCCTAGACACACCCATC 60.108 60.000 10.07 0.00 37.96 3.51
3103 3162 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.000 12.81 0.00 42.88 4.00
3104 3163 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
3105 3164 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
3109 3168 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
3215 3274 9.696917 CTTTGGTCAAAGTCAAGCTTTATAAAT 57.303 29.630 13.58 0.00 44.95 1.40
3231 3290 9.679661 TTAGATCATGTATTAGCTTTGGTCAAA 57.320 29.630 0.00 0.00 0.00 2.69
3232 3291 9.679661 TTTAGATCATGTATTAGCTTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
3233 3292 9.851686 ATTTAGATCATGTATTAGCTTTGGTCA 57.148 29.630 0.00 0.00 0.00 4.02
3273 3332 9.791801 AAACCAAAAATATCACCTTGCTTTATT 57.208 25.926 0.00 0.00 0.00 1.40
3274 3333 9.435688 GAAACCAAAAATATCACCTTGCTTTAT 57.564 29.630 0.00 0.00 0.00 1.40
3275 3334 7.596995 CGAAACCAAAAATATCACCTTGCTTTA 59.403 33.333 0.00 0.00 0.00 1.85
3276 3335 6.423604 CGAAACCAAAAATATCACCTTGCTTT 59.576 34.615 0.00 0.00 0.00 3.51
3277 3336 5.925969 CGAAACCAAAAATATCACCTTGCTT 59.074 36.000 0.00 0.00 0.00 3.91
3278 3337 5.010617 ACGAAACCAAAAATATCACCTTGCT 59.989 36.000 0.00 0.00 0.00 3.91
3279 3338 5.227152 ACGAAACCAAAAATATCACCTTGC 58.773 37.500 0.00 0.00 0.00 4.01
3280 3339 5.861787 GGACGAAACCAAAAATATCACCTTG 59.138 40.000 0.00 0.00 0.00 3.61
3281 3340 5.047590 GGGACGAAACCAAAAATATCACCTT 60.048 40.000 0.00 0.00 0.00 3.50
3282 3341 4.461431 GGGACGAAACCAAAAATATCACCT 59.539 41.667 0.00 0.00 0.00 4.00
3283 3342 4.740268 GGGACGAAACCAAAAATATCACC 58.260 43.478 0.00 0.00 0.00 4.02
3315 3374 3.065095 CGTGACCCAAACTAACGGAAAAA 59.935 43.478 0.00 0.00 0.00 1.94
3316 3375 2.613133 CGTGACCCAAACTAACGGAAAA 59.387 45.455 0.00 0.00 0.00 2.29
3317 3376 2.211806 CGTGACCCAAACTAACGGAAA 58.788 47.619 0.00 0.00 0.00 3.13
3318 3377 1.138661 ACGTGACCCAAACTAACGGAA 59.861 47.619 0.00 0.00 38.52 4.30
3319 3378 0.752054 ACGTGACCCAAACTAACGGA 59.248 50.000 0.00 0.00 38.52 4.69
3320 3379 1.528161 GAACGTGACCCAAACTAACGG 59.472 52.381 0.00 0.00 38.52 4.44
3321 3380 2.476821 AGAACGTGACCCAAACTAACG 58.523 47.619 0.00 0.00 40.00 3.18
3322 3381 3.431233 GCTAGAACGTGACCCAAACTAAC 59.569 47.826 0.00 0.00 0.00 2.34
3323 3382 3.069872 TGCTAGAACGTGACCCAAACTAA 59.930 43.478 0.00 0.00 0.00 2.24
3324 3383 2.629137 TGCTAGAACGTGACCCAAACTA 59.371 45.455 0.00 0.00 0.00 2.24
3325 3384 1.414919 TGCTAGAACGTGACCCAAACT 59.585 47.619 0.00 0.00 0.00 2.66
3326 3385 1.798813 CTGCTAGAACGTGACCCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
3327 3386 1.414919 ACTGCTAGAACGTGACCCAAA 59.585 47.619 0.00 0.00 0.00 3.28
3328 3387 1.000506 GACTGCTAGAACGTGACCCAA 59.999 52.381 0.00 0.00 0.00 4.12
3329 3388 0.601558 GACTGCTAGAACGTGACCCA 59.398 55.000 0.00 0.00 0.00 4.51
3330 3389 0.108756 GGACTGCTAGAACGTGACCC 60.109 60.000 0.00 0.00 0.00 4.46
3331 3390 0.456312 CGGACTGCTAGAACGTGACC 60.456 60.000 0.00 0.00 0.00 4.02
3332 3391 0.240411 ACGGACTGCTAGAACGTGAC 59.760 55.000 0.00 0.00 36.32 3.67
3333 3392 0.520404 GACGGACTGCTAGAACGTGA 59.480 55.000 0.00 0.00 37.96 4.35
3334 3393 0.456312 GGACGGACTGCTAGAACGTG 60.456 60.000 0.00 0.00 37.96 4.49
3335 3394 1.881602 GGACGGACTGCTAGAACGT 59.118 57.895 0.00 0.00 40.85 3.99
3336 3395 1.226323 CGGACGGACTGCTAGAACG 60.226 63.158 0.00 0.00 0.00 3.95
3337 3396 0.179169 GACGGACGGACTGCTAGAAC 60.179 60.000 0.00 0.00 0.00 3.01
3338 3397 0.322277 AGACGGACGGACTGCTAGAA 60.322 55.000 0.00 0.00 0.00 2.10
3339 3398 0.322277 AAGACGGACGGACTGCTAGA 60.322 55.000 0.00 0.00 0.00 2.43
3340 3399 1.376543 TAAGACGGACGGACTGCTAG 58.623 55.000 0.00 0.00 0.00 3.42
3341 3400 2.048444 ATAAGACGGACGGACTGCTA 57.952 50.000 0.00 0.00 0.00 3.49
3342 3401 1.183549 AATAAGACGGACGGACTGCT 58.816 50.000 0.00 0.00 0.00 4.24
3343 3402 2.005971 AAATAAGACGGACGGACTGC 57.994 50.000 0.00 0.00 0.00 4.40
3344 3403 2.093783 GCAAAATAAGACGGACGGACTG 59.906 50.000 0.00 0.00 0.00 3.51
3345 3404 2.028385 AGCAAAATAAGACGGACGGACT 60.028 45.455 0.00 0.00 0.00 3.85
3346 3405 2.344025 AGCAAAATAAGACGGACGGAC 58.656 47.619 0.00 0.00 0.00 4.79
3347 3406 2.028839 TGAGCAAAATAAGACGGACGGA 60.029 45.455 0.00 0.00 0.00 4.69
3348 3407 2.343101 TGAGCAAAATAAGACGGACGG 58.657 47.619 0.00 0.00 0.00 4.79
3349 3408 3.370978 ACATGAGCAAAATAAGACGGACG 59.629 43.478 0.00 0.00 0.00 4.79
3350 3409 4.946784 ACATGAGCAAAATAAGACGGAC 57.053 40.909 0.00 0.00 0.00 4.79
3351 3410 4.565166 CGTACATGAGCAAAATAAGACGGA 59.435 41.667 0.00 0.00 0.00 4.69
3352 3411 4.565166 TCGTACATGAGCAAAATAAGACGG 59.435 41.667 0.00 0.00 0.00 4.79
3353 3412 5.276395 CCTCGTACATGAGCAAAATAAGACG 60.276 44.000 0.00 0.00 34.56 4.18
3354 3413 5.581085 ACCTCGTACATGAGCAAAATAAGAC 59.419 40.000 0.00 0.00 34.56 3.01
3355 3414 5.580691 CACCTCGTACATGAGCAAAATAAGA 59.419 40.000 0.00 0.00 34.56 2.10
3356 3415 5.220662 CCACCTCGTACATGAGCAAAATAAG 60.221 44.000 0.00 0.00 34.56 1.73
3357 3416 4.634004 CCACCTCGTACATGAGCAAAATAA 59.366 41.667 0.00 0.00 34.56 1.40
3358 3417 4.188462 CCACCTCGTACATGAGCAAAATA 58.812 43.478 0.00 0.00 34.56 1.40
3359 3418 3.009723 CCACCTCGTACATGAGCAAAAT 58.990 45.455 0.00 0.00 34.56 1.82
3360 3419 2.224426 ACCACCTCGTACATGAGCAAAA 60.224 45.455 0.00 0.00 34.56 2.44
3361 3420 1.346395 ACCACCTCGTACATGAGCAAA 59.654 47.619 0.00 0.00 34.56 3.68
3362 3421 0.973632 ACCACCTCGTACATGAGCAA 59.026 50.000 0.00 0.00 34.56 3.91
3363 3422 1.475280 GTACCACCTCGTACATGAGCA 59.525 52.381 0.00 0.00 38.78 4.26
3364 3423 1.749634 AGTACCACCTCGTACATGAGC 59.250 52.381 0.00 0.00 40.94 4.26
3365 3424 5.338365 GTTTAGTACCACCTCGTACATGAG 58.662 45.833 0.00 0.00 40.94 2.90
3366 3425 4.142622 CGTTTAGTACCACCTCGTACATGA 60.143 45.833 0.00 0.00 40.94 3.07
3367 3426 4.100529 CGTTTAGTACCACCTCGTACATG 58.899 47.826 0.00 0.00 40.94 3.21
3368 3427 3.758554 ACGTTTAGTACCACCTCGTACAT 59.241 43.478 0.00 0.00 40.94 2.29
3369 3428 3.146066 ACGTTTAGTACCACCTCGTACA 58.854 45.455 0.00 0.00 40.94 2.90
3370 3429 3.831715 ACGTTTAGTACCACCTCGTAC 57.168 47.619 0.00 0.00 39.15 3.67
3371 3430 3.568007 ACAACGTTTAGTACCACCTCGTA 59.432 43.478 0.00 0.00 0.00 3.43
3372 3431 2.362077 ACAACGTTTAGTACCACCTCGT 59.638 45.455 0.00 0.00 0.00 4.18
3373 3432 2.982470 GACAACGTTTAGTACCACCTCG 59.018 50.000 0.00 0.00 0.00 4.63
3374 3433 3.985925 CAGACAACGTTTAGTACCACCTC 59.014 47.826 0.00 0.00 0.00 3.85
3375 3434 3.638160 TCAGACAACGTTTAGTACCACCT 59.362 43.478 0.00 0.00 0.00 4.00
3376 3435 3.981211 TCAGACAACGTTTAGTACCACC 58.019 45.455 0.00 0.00 0.00 4.61
3377 3436 5.467705 AGATCAGACAACGTTTAGTACCAC 58.532 41.667 0.00 0.00 0.00 4.16
3378 3437 5.242171 TGAGATCAGACAACGTTTAGTACCA 59.758 40.000 0.00 0.00 0.00 3.25
3379 3438 5.572126 GTGAGATCAGACAACGTTTAGTACC 59.428 44.000 0.00 0.00 0.00 3.34
3380 3439 6.380190 AGTGAGATCAGACAACGTTTAGTAC 58.620 40.000 0.00 0.00 0.00 2.73
3381 3440 6.570672 AGTGAGATCAGACAACGTTTAGTA 57.429 37.500 0.00 0.00 0.00 1.82
3382 3441 5.455056 AGTGAGATCAGACAACGTTTAGT 57.545 39.130 0.00 0.00 0.00 2.24
3383 3442 6.771188 AAAGTGAGATCAGACAACGTTTAG 57.229 37.500 0.00 0.00 0.00 1.85
3384 3443 6.759356 TCAAAAGTGAGATCAGACAACGTTTA 59.241 34.615 0.00 0.00 0.00 2.01
3385 3444 5.584649 TCAAAAGTGAGATCAGACAACGTTT 59.415 36.000 0.00 0.00 0.00 3.60
3386 3445 5.116180 TCAAAAGTGAGATCAGACAACGTT 58.884 37.500 0.00 0.00 0.00 3.99
3387 3446 4.693283 TCAAAAGTGAGATCAGACAACGT 58.307 39.130 0.00 0.00 0.00 3.99
3400 3459 1.939934 CTGCAACGGACTCAAAAGTGA 59.060 47.619 0.00 0.00 35.28 3.41
3401 3460 1.002468 CCTGCAACGGACTCAAAAGTG 60.002 52.381 0.00 0.00 35.28 3.16
3402 3461 1.308998 CCTGCAACGGACTCAAAAGT 58.691 50.000 0.00 0.00 38.88 2.66
3403 3462 0.593128 CCCTGCAACGGACTCAAAAG 59.407 55.000 0.00 0.00 0.00 2.27
3404 3463 0.106918 ACCCTGCAACGGACTCAAAA 60.107 50.000 6.49 0.00 0.00 2.44
3405 3464 0.759959 TACCCTGCAACGGACTCAAA 59.240 50.000 6.49 0.00 0.00 2.69
3406 3465 0.981183 ATACCCTGCAACGGACTCAA 59.019 50.000 6.49 0.00 0.00 3.02
3407 3466 0.981183 AATACCCTGCAACGGACTCA 59.019 50.000 6.49 0.00 0.00 3.41
3408 3467 2.109425 AAATACCCTGCAACGGACTC 57.891 50.000 6.49 0.00 0.00 3.36
3409 3468 2.159382 CAAAATACCCTGCAACGGACT 58.841 47.619 6.49 0.00 0.00 3.85
3410 3469 1.201414 CCAAAATACCCTGCAACGGAC 59.799 52.381 6.49 0.00 0.00 4.79
3411 3470 1.540267 CCAAAATACCCTGCAACGGA 58.460 50.000 6.49 0.00 0.00 4.69
3412 3471 0.530288 CCCAAAATACCCTGCAACGG 59.470 55.000 0.00 0.00 0.00 4.44
3413 3472 1.201414 GTCCCAAAATACCCTGCAACG 59.799 52.381 0.00 0.00 0.00 4.10
3414 3473 2.231235 CAGTCCCAAAATACCCTGCAAC 59.769 50.000 0.00 0.00 0.00 4.17
3415 3474 2.109128 TCAGTCCCAAAATACCCTGCAA 59.891 45.455 0.00 0.00 0.00 4.08
3416 3475 1.707989 TCAGTCCCAAAATACCCTGCA 59.292 47.619 0.00 0.00 0.00 4.41
3417 3476 2.369394 CTCAGTCCCAAAATACCCTGC 58.631 52.381 0.00 0.00 0.00 4.85
3418 3477 2.369394 GCTCAGTCCCAAAATACCCTG 58.631 52.381 0.00 0.00 0.00 4.45
3419 3478 1.285078 GGCTCAGTCCCAAAATACCCT 59.715 52.381 0.00 0.00 0.00 4.34
3420 3479 1.285078 AGGCTCAGTCCCAAAATACCC 59.715 52.381 0.00 0.00 0.00 3.69
3421 3480 2.290960 ACAGGCTCAGTCCCAAAATACC 60.291 50.000 0.00 0.00 0.00 2.73
3422 3481 3.073274 ACAGGCTCAGTCCCAAAATAC 57.927 47.619 0.00 0.00 0.00 1.89
3423 3482 3.806949 AACAGGCTCAGTCCCAAAATA 57.193 42.857 0.00 0.00 0.00 1.40
3424 3483 2.683211 AACAGGCTCAGTCCCAAAAT 57.317 45.000 0.00 0.00 0.00 1.82
3425 3484 2.306847 GAAACAGGCTCAGTCCCAAAA 58.693 47.619 0.00 0.00 0.00 2.44
3426 3485 1.813862 CGAAACAGGCTCAGTCCCAAA 60.814 52.381 0.00 0.00 0.00 3.28
3427 3486 0.250295 CGAAACAGGCTCAGTCCCAA 60.250 55.000 0.00 0.00 0.00 4.12
3428 3487 1.371183 CGAAACAGGCTCAGTCCCA 59.629 57.895 0.00 0.00 0.00 4.37
3429 3488 0.606604 TACGAAACAGGCTCAGTCCC 59.393 55.000 0.00 0.00 0.00 4.46
3430 3489 1.000506 TGTACGAAACAGGCTCAGTCC 59.999 52.381 0.00 0.00 33.01 3.85
3431 3490 2.433868 TGTACGAAACAGGCTCAGTC 57.566 50.000 0.00 0.00 33.01 3.51
3440 3499 6.810182 GGCTCTTTTAGTATCTGTACGAAACA 59.190 38.462 0.00 0.00 35.87 2.83
3441 3500 6.255237 GGGCTCTTTTAGTATCTGTACGAAAC 59.745 42.308 0.00 0.00 35.87 2.78
3442 3501 6.071221 TGGGCTCTTTTAGTATCTGTACGAAA 60.071 38.462 0.00 0.00 34.82 3.46
3443 3502 5.419788 TGGGCTCTTTTAGTATCTGTACGAA 59.580 40.000 0.00 0.00 35.92 3.85
3444 3503 4.951715 TGGGCTCTTTTAGTATCTGTACGA 59.048 41.667 0.00 0.00 35.92 3.43
3445 3504 5.041940 GTGGGCTCTTTTAGTATCTGTACG 58.958 45.833 0.00 0.00 35.92 3.67
3446 3505 5.974108 TGTGGGCTCTTTTAGTATCTGTAC 58.026 41.667 0.00 0.00 0.00 2.90
3447 3506 6.382859 TCATGTGGGCTCTTTTAGTATCTGTA 59.617 38.462 0.00 0.00 0.00 2.74
3448 3507 5.189736 TCATGTGGGCTCTTTTAGTATCTGT 59.810 40.000 0.00 0.00 0.00 3.41
3449 3508 5.674525 TCATGTGGGCTCTTTTAGTATCTG 58.325 41.667 0.00 0.00 0.00 2.90
3450 3509 5.426833 ACTCATGTGGGCTCTTTTAGTATCT 59.573 40.000 0.00 0.00 0.00 1.98
3451 3510 5.675538 ACTCATGTGGGCTCTTTTAGTATC 58.324 41.667 0.00 0.00 0.00 2.24
3452 3511 5.189736 TGACTCATGTGGGCTCTTTTAGTAT 59.810 40.000 0.00 0.00 0.00 2.12
3453 3512 4.530553 TGACTCATGTGGGCTCTTTTAGTA 59.469 41.667 0.00 0.00 0.00 1.82
3454 3513 3.327757 TGACTCATGTGGGCTCTTTTAGT 59.672 43.478 0.00 0.00 0.00 2.24
3455 3514 3.942829 TGACTCATGTGGGCTCTTTTAG 58.057 45.455 0.00 0.00 0.00 1.85
3456 3515 4.264253 CATGACTCATGTGGGCTCTTTTA 58.736 43.478 10.49 0.00 37.12 1.52
3457 3516 2.957402 TGACTCATGTGGGCTCTTTT 57.043 45.000 0.00 0.00 0.00 2.27
3458 3517 2.719739 CATGACTCATGTGGGCTCTTT 58.280 47.619 10.49 0.00 37.12 2.52
3459 3518 1.681166 GCATGACTCATGTGGGCTCTT 60.681 52.381 18.36 0.00 43.10 2.85
3460 3519 0.107312 GCATGACTCATGTGGGCTCT 60.107 55.000 18.36 0.00 43.10 4.09
3461 3520 0.393402 TGCATGACTCATGTGGGCTC 60.393 55.000 18.36 3.63 43.10 4.70
3462 3521 0.393944 CTGCATGACTCATGTGGGCT 60.394 55.000 18.36 0.00 43.10 5.19
3463 3522 1.381928 CCTGCATGACTCATGTGGGC 61.382 60.000 18.36 6.52 43.10 5.36
3464 3523 0.034767 ACCTGCATGACTCATGTGGG 60.035 55.000 24.33 22.62 43.10 4.61
3465 3524 1.339342 TGACCTGCATGACTCATGTGG 60.339 52.381 18.36 20.17 43.10 4.17
3466 3525 2.007608 CTGACCTGCATGACTCATGTG 58.992 52.381 18.36 12.14 43.10 3.21
3467 3526 1.678123 GCTGACCTGCATGACTCATGT 60.678 52.381 18.36 0.78 43.10 3.21
3468 3527 1.015109 GCTGACCTGCATGACTCATG 58.985 55.000 13.90 13.90 43.91 3.07
3469 3528 0.910338 AGCTGACCTGCATGACTCAT 59.090 50.000 0.00 0.00 34.99 2.90
3470 3529 0.036671 CAGCTGACCTGCATGACTCA 60.037 55.000 8.42 0.00 34.21 3.41
3471 3530 0.743701 CCAGCTGACCTGCATGACTC 60.744 60.000 17.39 0.00 40.36 3.36
3472 3531 1.196766 TCCAGCTGACCTGCATGACT 61.197 55.000 17.39 0.00 40.36 3.41
3473 3532 0.107312 ATCCAGCTGACCTGCATGAC 60.107 55.000 17.39 0.00 40.36 3.06
3474 3533 0.622136 AATCCAGCTGACCTGCATGA 59.378 50.000 17.39 0.76 40.36 3.07
3475 3534 1.134367 CAAATCCAGCTGACCTGCATG 59.866 52.381 17.39 0.89 40.36 4.06
3476 3535 1.471119 CAAATCCAGCTGACCTGCAT 58.529 50.000 17.39 0.00 40.36 3.96
3477 3536 0.609957 CCAAATCCAGCTGACCTGCA 60.610 55.000 17.39 0.00 40.36 4.41
3478 3537 1.318158 CCCAAATCCAGCTGACCTGC 61.318 60.000 17.39 0.00 40.36 4.85
3479 3538 1.318158 GCCCAAATCCAGCTGACCTG 61.318 60.000 17.39 6.68 41.41 4.00
3480 3539 1.000396 GCCCAAATCCAGCTGACCT 60.000 57.895 17.39 0.00 0.00 3.85
3481 3540 2.054453 GGCCCAAATCCAGCTGACC 61.054 63.158 17.39 0.00 0.00 4.02
3482 3541 0.613012 AAGGCCCAAATCCAGCTGAC 60.613 55.000 17.39 0.00 0.00 3.51
3483 3542 0.612732 CAAGGCCCAAATCCAGCTGA 60.613 55.000 17.39 1.21 0.00 4.26
3484 3543 1.895238 CAAGGCCCAAATCCAGCTG 59.105 57.895 6.78 6.78 0.00 4.24
3485 3544 1.986210 GCAAGGCCCAAATCCAGCT 60.986 57.895 0.00 0.00 0.00 4.24
3486 3545 2.580815 GCAAGGCCCAAATCCAGC 59.419 61.111 0.00 0.00 0.00 4.85
3487 3546 3.302129 GGCAAGGCCCAAATCCAG 58.698 61.111 0.00 0.00 44.06 3.86
3498 3557 5.062569 CAGGATAATTTGGCCTGGCAAGG 62.063 52.174 22.05 1.30 44.24 3.61
3499 3558 2.101917 CAGGATAATTTGGCCTGGCAAG 59.898 50.000 22.05 0.00 44.24 4.01
3500 3559 2.109774 CAGGATAATTTGGCCTGGCAA 58.890 47.619 22.05 6.26 44.24 4.52
3501 3560 1.779221 CAGGATAATTTGGCCTGGCA 58.221 50.000 22.05 1.21 44.24 4.92
3508 3567 2.465813 TGGTTGGCCAGGATAATTTGG 58.534 47.619 5.11 0.00 40.46 3.28
3509 3568 3.118665 CCTTGGTTGGCCAGGATAATTTG 60.119 47.826 5.11 0.00 46.91 2.32
3510 3569 3.106827 CCTTGGTTGGCCAGGATAATTT 58.893 45.455 5.11 0.00 46.91 1.82
3511 3570 2.750814 CCTTGGTTGGCCAGGATAATT 58.249 47.619 5.11 0.00 46.91 1.40
3512 3571 1.689258 GCCTTGGTTGGCCAGGATAAT 60.689 52.381 12.05 0.00 46.91 1.28
3513 3572 0.324275 GCCTTGGTTGGCCAGGATAA 60.324 55.000 12.05 3.26 46.91 1.75
3514 3573 1.306296 GCCTTGGTTGGCCAGGATA 59.694 57.895 12.05 0.00 46.91 2.59
3515 3574 2.037847 GCCTTGGTTGGCCAGGAT 59.962 61.111 12.05 0.00 46.91 3.24
3523 3582 3.814268 CATCGGCCGCCTTGGTTG 61.814 66.667 23.51 5.09 41.21 3.77
3527 3586 2.762006 TTTTTGCATCGGCCGCCTTG 62.762 55.000 23.51 18.58 40.13 3.61
3528 3587 2.569354 TTTTTGCATCGGCCGCCTT 61.569 52.632 23.51 4.48 40.13 4.35
3529 3588 2.988684 TTTTTGCATCGGCCGCCT 60.989 55.556 23.51 7.36 40.13 5.52
3545 3604 1.202879 TCGTCCACCAGCCAGATTTTT 60.203 47.619 0.00 0.00 0.00 1.94
3546 3605 0.400213 TCGTCCACCAGCCAGATTTT 59.600 50.000 0.00 0.00 0.00 1.82
3547 3606 0.321653 GTCGTCCACCAGCCAGATTT 60.322 55.000 0.00 0.00 0.00 2.17
3548 3607 1.194781 AGTCGTCCACCAGCCAGATT 61.195 55.000 0.00 0.00 0.00 2.40
3549 3608 1.194781 AAGTCGTCCACCAGCCAGAT 61.195 55.000 0.00 0.00 0.00 2.90
3550 3609 1.837051 AAGTCGTCCACCAGCCAGA 60.837 57.895 0.00 0.00 0.00 3.86
3551 3610 1.669115 CAAGTCGTCCACCAGCCAG 60.669 63.158 0.00 0.00 0.00 4.85
3552 3611 1.691195 TTCAAGTCGTCCACCAGCCA 61.691 55.000 0.00 0.00 0.00 4.75
3553 3612 1.070786 TTCAAGTCGTCCACCAGCC 59.929 57.895 0.00 0.00 0.00 4.85
3554 3613 0.531974 TGTTCAAGTCGTCCACCAGC 60.532 55.000 0.00 0.00 0.00 4.85
3555 3614 1.217882 GTGTTCAAGTCGTCCACCAG 58.782 55.000 0.00 0.00 0.00 4.00
3556 3615 0.537653 TGTGTTCAAGTCGTCCACCA 59.462 50.000 0.00 0.00 0.00 4.17
3557 3616 0.935196 GTGTGTTCAAGTCGTCCACC 59.065 55.000 0.00 0.00 0.00 4.61
3558 3617 1.647346 TGTGTGTTCAAGTCGTCCAC 58.353 50.000 0.00 0.00 0.00 4.02
3559 3618 2.004017 GTTGTGTGTTCAAGTCGTCCA 58.996 47.619 0.00 0.00 0.00 4.02
3560 3619 1.329599 GGTTGTGTGTTCAAGTCGTCC 59.670 52.381 0.00 0.00 0.00 4.79
3561 3620 2.277084 AGGTTGTGTGTTCAAGTCGTC 58.723 47.619 0.00 0.00 0.00 4.20
3562 3621 2.396590 AGGTTGTGTGTTCAAGTCGT 57.603 45.000 0.00 0.00 0.00 4.34
3563 3622 3.001939 GGTTAGGTTGTGTGTTCAAGTCG 59.998 47.826 0.00 0.00 0.00 4.18
3564 3623 3.942748 TGGTTAGGTTGTGTGTTCAAGTC 59.057 43.478 0.00 0.00 0.00 3.01
3565 3624 3.958018 TGGTTAGGTTGTGTGTTCAAGT 58.042 40.909 0.00 0.00 0.00 3.16
3566 3625 5.514274 AATGGTTAGGTTGTGTGTTCAAG 57.486 39.130 0.00 0.00 0.00 3.02
3567 3626 4.035792 CGAATGGTTAGGTTGTGTGTTCAA 59.964 41.667 0.00 0.00 0.00 2.69
3568 3627 3.562141 CGAATGGTTAGGTTGTGTGTTCA 59.438 43.478 0.00 0.00 0.00 3.18
3569 3628 3.810941 TCGAATGGTTAGGTTGTGTGTTC 59.189 43.478 0.00 0.00 0.00 3.18
3570 3629 3.562557 GTCGAATGGTTAGGTTGTGTGTT 59.437 43.478 0.00 0.00 0.00 3.32
3571 3630 3.135994 GTCGAATGGTTAGGTTGTGTGT 58.864 45.455 0.00 0.00 0.00 3.72
3572 3631 3.135225 TGTCGAATGGTTAGGTTGTGTG 58.865 45.455 0.00 0.00 0.00 3.82
3573 3632 3.399330 CTGTCGAATGGTTAGGTTGTGT 58.601 45.455 0.00 0.00 0.00 3.72
3574 3633 2.742053 CCTGTCGAATGGTTAGGTTGTG 59.258 50.000 0.00 0.00 0.00 3.33
3575 3634 2.370849 ACCTGTCGAATGGTTAGGTTGT 59.629 45.455 4.92 0.00 38.56 3.32
3576 3635 2.742053 CACCTGTCGAATGGTTAGGTTG 59.258 50.000 7.75 0.00 39.63 3.77
3577 3636 2.635915 TCACCTGTCGAATGGTTAGGTT 59.364 45.455 7.75 0.00 39.63 3.50
3578 3637 2.253610 TCACCTGTCGAATGGTTAGGT 58.746 47.619 7.75 3.06 42.23 3.08
3579 3638 3.198068 CATCACCTGTCGAATGGTTAGG 58.802 50.000 7.75 0.00 33.75 2.69
3580 3639 3.618594 CACATCACCTGTCGAATGGTTAG 59.381 47.826 7.75 4.41 35.29 2.34
3581 3640 3.007506 ACACATCACCTGTCGAATGGTTA 59.992 43.478 7.75 1.73 35.29 2.85
3582 3641 2.224523 ACACATCACCTGTCGAATGGTT 60.225 45.455 7.75 0.00 35.29 3.67
3583 3642 1.347707 ACACATCACCTGTCGAATGGT 59.652 47.619 4.92 4.92 35.29 3.55
3584 3643 2.002586 GACACATCACCTGTCGAATGG 58.997 52.381 3.68 3.68 35.29 3.16
3590 3649 0.317160 TGGTCGACACATCACCTGTC 59.683 55.000 18.91 0.00 35.29 3.51
3591 3650 0.756294 TTGGTCGACACATCACCTGT 59.244 50.000 18.91 0.00 39.20 4.00
3592 3651 1.148310 GTTGGTCGACACATCACCTG 58.852 55.000 18.91 0.00 31.16 4.00
3593 3652 1.048601 AGTTGGTCGACACATCACCT 58.951 50.000 18.91 0.55 31.16 4.00
3594 3653 2.736144 TAGTTGGTCGACACATCACC 57.264 50.000 18.91 0.00 0.00 4.02
3595 3654 2.412089 GCTTAGTTGGTCGACACATCAC 59.588 50.000 18.91 8.94 0.00 3.06
3596 3655 2.299013 AGCTTAGTTGGTCGACACATCA 59.701 45.455 18.91 2.69 0.00 3.07
3597 3656 2.924290 GAGCTTAGTTGGTCGACACATC 59.076 50.000 18.91 11.60 0.00 3.06
3598 3657 2.960819 GAGCTTAGTTGGTCGACACAT 58.039 47.619 18.91 2.43 0.00 3.21
3599 3658 2.433868 GAGCTTAGTTGGTCGACACA 57.566 50.000 18.91 10.22 0.00 3.72
3605 3664 1.201343 GCGATCGAGCTTAGTTGGTC 58.799 55.000 21.57 0.00 0.00 4.02
3606 3665 0.530744 TGCGATCGAGCTTAGTTGGT 59.469 50.000 21.57 0.00 38.13 3.67
3607 3666 1.590238 CTTGCGATCGAGCTTAGTTGG 59.410 52.381 21.57 0.00 38.13 3.77
3608 3667 2.530177 TCTTGCGATCGAGCTTAGTTG 58.470 47.619 21.57 0.00 38.13 3.16
3609 3668 2.941453 TCTTGCGATCGAGCTTAGTT 57.059 45.000 21.57 0.00 38.13 2.24
3610 3669 4.216472 TCATATCTTGCGATCGAGCTTAGT 59.784 41.667 21.57 0.18 38.13 2.24
3611 3670 4.727475 TCATATCTTGCGATCGAGCTTAG 58.273 43.478 21.57 7.60 38.13 2.18
3612 3671 4.766404 TCATATCTTGCGATCGAGCTTA 57.234 40.909 21.57 3.54 38.13 3.09
3613 3672 3.650070 TCATATCTTGCGATCGAGCTT 57.350 42.857 21.57 1.14 38.13 3.74
3614 3673 3.865011 ATCATATCTTGCGATCGAGCT 57.135 42.857 21.57 2.07 38.13 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.