Multiple sequence alignment - TraesCS4A01G027900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G027900 chr4A 100.000 2805 0 0 1 2805 19641591 19644395 0.000000e+00 5180
1 TraesCS4A01G027900 chr4A 88.432 389 37 8 2418 2802 708313880 708313496 1.970000e-126 462
2 TraesCS4A01G027900 chr2D 93.735 862 48 6 1 859 648043379 648044237 0.000000e+00 1288
3 TraesCS4A01G027900 chr2D 86.585 328 27 14 1387 1704 275790768 275791088 2.070000e-91 346
4 TraesCS4A01G027900 chr2D 88.028 284 18 11 1431 1704 275260915 275261192 3.490000e-84 322
5 TraesCS4A01G027900 chr3D 93.728 861 49 5 1 859 390194146 390195003 0.000000e+00 1286
6 TraesCS4A01G027900 chr3D 81.188 505 81 12 860 1357 590956132 590955635 7.280000e-106 394
7 TraesCS4A01G027900 chr3D 84.334 383 34 15 2418 2796 612166215 612166575 4.450000e-93 351
8 TraesCS4A01G027900 chr5A 93.387 862 52 5 1 860 447378161 447377303 0.000000e+00 1271
9 TraesCS4A01G027900 chr5A 81.511 503 87 5 860 1357 142844834 142845335 2.600000e-110 409
10 TraesCS4A01G027900 chr2A 92.807 862 53 8 1 860 440021962 440021108 0.000000e+00 1240
11 TraesCS4A01G027900 chr2A 92.674 860 58 5 1 859 744524196 744523341 0.000000e+00 1234
12 TraesCS4A01G027900 chr2A 92.657 858 57 5 1 857 385368152 385369004 0.000000e+00 1230
13 TraesCS4A01G027900 chr2A 92.558 860 58 6 1 859 744513634 744512780 0.000000e+00 1229
14 TraesCS4A01G027900 chr2A 81.620 321 44 11 1387 1698 367166036 367166350 4.640000e-63 252
15 TraesCS4A01G027900 chr1A 92.700 863 57 6 1 861 74121601 74120743 0.000000e+00 1240
16 TraesCS4A01G027900 chr1A 87.500 296 28 9 1387 1678 235678137 235678427 1.610000e-87 333
17 TraesCS4A01G027900 chr7A 92.774 858 59 3 1 857 148792651 148793506 0.000000e+00 1238
18 TraesCS4A01G027900 chr7A 80.488 328 49 9 1386 1702 209302915 209303238 1.300000e-58 237
19 TraesCS4A01G027900 chr4D 90.603 713 61 5 1704 2413 447597578 447596869 0.000000e+00 941
20 TraesCS4A01G027900 chr4D 83.851 322 31 16 1387 1695 183079799 183080112 1.270000e-73 287
21 TraesCS4A01G027900 chr4B 90.671 611 51 6 1807 2413 560003822 560003214 0.000000e+00 808
22 TraesCS4A01G027900 chr4B 82.107 503 82 7 860 1357 613000182 613000681 9.290000e-115 424
23 TraesCS4A01G027900 chr4B 87.360 356 39 6 2450 2802 580857462 580857110 1.210000e-108 403
24 TraesCS4A01G027900 chr7B 88.251 383 37 8 2418 2796 746877566 746877944 4.260000e-123 451
25 TraesCS4A01G027900 chr7B 87.755 392 41 7 2418 2805 746878449 746878061 4.260000e-123 451
26 TraesCS4A01G027900 chr7B 81.673 502 87 4 860 1357 609891828 609892328 2.010000e-111 412
27 TraesCS4A01G027900 chr7B 89.426 331 21 11 1384 1704 50522529 50522203 3.360000e-109 405
28 TraesCS4A01G027900 chr7B 80.990 505 88 6 860 1358 704082211 704082713 7.280000e-106 394
29 TraesCS4A01G027900 chr7B 84.242 330 36 11 1384 1702 283481339 283481663 9.760000e-80 307
30 TraesCS4A01G027900 chr5D 82.470 502 82 5 860 1356 380622042 380622542 4.290000e-118 435
31 TraesCS4A01G027900 chr2B 82.271 502 83 5 860 1357 382563295 382562796 2.000000e-116 429
32 TraesCS4A01G027900 chr2B 81.836 501 85 5 860 1356 593651250 593650752 1.550000e-112 416
33 TraesCS4A01G027900 chr5B 82.377 488 83 2 873 1357 704273539 704273052 3.340000e-114 422
34 TraesCS4A01G027900 chr3A 86.260 393 44 10 2418 2805 704682733 704682346 4.320000e-113 418
35 TraesCS4A01G027900 chr3A 79.822 337 52 14 2083 2413 243899183 243899509 6.040000e-57 231
36 TraesCS4A01G027900 chr1D 87.625 299 28 9 1387 1681 164424967 164424674 3.460000e-89 339
37 TraesCS4A01G027900 chr6B 85.231 325 32 12 1387 1702 397733484 397733167 1.250000e-83 320
38 TraesCS4A01G027900 chr1B 86.296 270 22 10 1414 1678 225809443 225809702 2.130000e-71 279
39 TraesCS4A01G027900 chr7D 90.303 165 16 0 2418 2582 620311837 620312001 1.690000e-52 217
40 TraesCS4A01G027900 chr6D 82.576 132 18 4 2274 2402 402502123 402502252 8.210000e-21 111
41 TraesCS4A01G027900 chr6A 80.822 146 22 5 2270 2413 549238597 549238738 2.950000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G027900 chr4A 19641591 19644395 2804 False 5180 5180 100.000 1 2805 1 chr4A.!!$F1 2804
1 TraesCS4A01G027900 chr2D 648043379 648044237 858 False 1288 1288 93.735 1 859 1 chr2D.!!$F3 858
2 TraesCS4A01G027900 chr3D 390194146 390195003 857 False 1286 1286 93.728 1 859 1 chr3D.!!$F1 858
3 TraesCS4A01G027900 chr5A 447377303 447378161 858 True 1271 1271 93.387 1 860 1 chr5A.!!$R1 859
4 TraesCS4A01G027900 chr5A 142844834 142845335 501 False 409 409 81.511 860 1357 1 chr5A.!!$F1 497
5 TraesCS4A01G027900 chr2A 440021108 440021962 854 True 1240 1240 92.807 1 860 1 chr2A.!!$R1 859
6 TraesCS4A01G027900 chr2A 744523341 744524196 855 True 1234 1234 92.674 1 859 1 chr2A.!!$R3 858
7 TraesCS4A01G027900 chr2A 385368152 385369004 852 False 1230 1230 92.657 1 857 1 chr2A.!!$F2 856
8 TraesCS4A01G027900 chr2A 744512780 744513634 854 True 1229 1229 92.558 1 859 1 chr2A.!!$R2 858
9 TraesCS4A01G027900 chr1A 74120743 74121601 858 True 1240 1240 92.700 1 861 1 chr1A.!!$R1 860
10 TraesCS4A01G027900 chr7A 148792651 148793506 855 False 1238 1238 92.774 1 857 1 chr7A.!!$F1 856
11 TraesCS4A01G027900 chr4D 447596869 447597578 709 True 941 941 90.603 1704 2413 1 chr4D.!!$R1 709
12 TraesCS4A01G027900 chr4B 560003214 560003822 608 True 808 808 90.671 1807 2413 1 chr4B.!!$R1 606
13 TraesCS4A01G027900 chr7B 609891828 609892328 500 False 412 412 81.673 860 1357 1 chr7B.!!$F2 497
14 TraesCS4A01G027900 chr7B 704082211 704082713 502 False 394 394 80.990 860 1358 1 chr7B.!!$F3 498
15 TraesCS4A01G027900 chr5D 380622042 380622542 500 False 435 435 82.470 860 1356 1 chr5D.!!$F1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 234 0.118144 AAAGAGAGAGGGGAGGCTGT 59.882 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2174 0.250234 CATGCTTTCCTCTGTCCCGA 59.75 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.471617 GGATGAGACCAGGGACATGG 59.528 60.000 0.81 0.81 46.47 3.66
157 158 4.037923 GGTTCGGGTATTTATCGGAGTACA 59.962 45.833 0.00 0.00 0.00 2.90
181 182 1.153588 GTTACGGGAATTCGCCGGA 60.154 57.895 27.84 21.80 35.14 5.14
229 233 0.829990 GAAAGAGAGAGGGGAGGCTG 59.170 60.000 0.00 0.00 0.00 4.85
230 234 0.118144 AAAGAGAGAGGGGAGGCTGT 59.882 55.000 0.00 0.00 0.00 4.40
252 261 2.286121 CCCCCAAGGCCTAGTCCA 60.286 66.667 5.16 0.00 0.00 4.02
306 315 4.021016 TCCTTCCTTCTCTTCTCTTTTCCG 60.021 45.833 0.00 0.00 0.00 4.30
338 347 6.159928 TCTCTCCTACTCCTACTACATGGAAA 59.840 42.308 0.00 0.00 31.23 3.13
361 370 2.179424 GGGGGAATCCTACTCCTAGTGA 59.821 54.545 0.00 0.00 35.33 3.41
395 404 2.561956 GGGCGCGCCATAGTAGAGA 61.562 63.158 46.88 0.00 37.98 3.10
431 440 5.322754 CCTCCTCCACTCCTTTATATACGA 58.677 45.833 0.00 0.00 0.00 3.43
473 484 6.765512 TGAACACACAAGTTGATCAGTTGATA 59.234 34.615 20.88 0.00 37.98 2.15
514 525 0.478507 CCCTCCACCATAATCCACCC 59.521 60.000 0.00 0.00 0.00 4.61
570 581 2.928301 GCGTCGGTAGCATCATCATCAT 60.928 50.000 0.00 0.00 34.19 2.45
602 613 2.738521 CGTGCTGACGGAACCCTG 60.739 66.667 0.00 0.00 42.18 4.45
783 794 4.162888 TGAGGGTACGTAGATGACACTCTA 59.837 45.833 16.43 3.39 42.91 2.43
889 900 2.800250 AGCTGGTTCATGAAGGAAAGG 58.200 47.619 8.80 0.00 0.00 3.11
890 901 2.108952 AGCTGGTTCATGAAGGAAAGGT 59.891 45.455 8.80 6.91 0.00 3.50
920 931 2.816337 CGTACCAAACTTCAATGGGGGT 60.816 50.000 0.00 0.00 41.17 4.95
923 934 2.324541 CCAAACTTCAATGGGGGTTCA 58.675 47.619 0.00 0.00 32.87 3.18
934 945 2.120312 TGGGGGTTCATGCTATAACGA 58.880 47.619 0.00 0.00 0.00 3.85
951 962 3.722555 ACGACAAACTATGTTGATGCG 57.277 42.857 2.95 0.00 45.00 4.73
953 964 2.785679 GACAAACTATGTTGATGCGCC 58.214 47.619 4.18 0.00 44.12 6.53
963 974 1.352622 TTGATGCGCCCTCCCCTAAT 61.353 55.000 4.18 0.00 0.00 1.73
975 986 4.351111 CCCTCCCCTAATGCAACTAGTAAT 59.649 45.833 0.00 0.00 0.00 1.89
976 987 5.308825 CCTCCCCTAATGCAACTAGTAATG 58.691 45.833 0.00 0.00 0.00 1.90
1015 1026 5.312443 AGACCTCCTATGGGTTTTGTTAAGT 59.688 40.000 0.00 0.00 37.17 2.24
1021 1032 9.238368 CTCCTATGGGTTTTGTTAAGTTGAATA 57.762 33.333 0.00 0.00 0.00 1.75
1027 1038 9.703892 TGGGTTTTGTTAAGTTGAATATTGATG 57.296 29.630 0.00 0.00 0.00 3.07
1028 1039 9.705290 GGGTTTTGTTAAGTTGAATATTGATGT 57.295 29.630 0.00 0.00 0.00 3.06
1059 1075 4.623932 TGATCTGCTTAAGGACACAGTT 57.376 40.909 4.29 0.00 0.00 3.16
1087 1103 1.909302 TCCCCAGAGATGACAAAGGAC 59.091 52.381 0.00 0.00 0.00 3.85
1089 1105 1.550524 CCCAGAGATGACAAAGGACGA 59.449 52.381 0.00 0.00 0.00 4.20
1095 1111 5.233902 CAGAGATGACAAAGGACGATTCATC 59.766 44.000 0.00 0.00 41.91 2.92
1114 1130 1.204467 TCATTGGCGGAAATTGGAAGC 59.796 47.619 0.00 0.00 0.00 3.86
1117 1133 0.887933 TGGCGGAAATTGGAAGCTTC 59.112 50.000 18.54 18.54 0.00 3.86
1141 1157 3.749226 TGGTGTGCTGATGTATTGACAA 58.251 40.909 0.00 0.00 39.59 3.18
1144 1160 4.023279 GGTGTGCTGATGTATTGACAACAA 60.023 41.667 0.00 0.00 37.84 2.83
1173 1189 4.672899 TGGCTCTAAGGTTTGGCTTATTT 58.327 39.130 0.00 0.00 0.00 1.40
1187 1203 3.507622 GGCTTATTTCTTGCACAGAAGGT 59.492 43.478 10.02 7.27 42.76 3.50
1208 1224 4.213482 GGTGGGATGCAATCGTCTTATTAC 59.787 45.833 0.00 0.00 46.86 1.89
1219 1235 8.276325 GCAATCGTCTTATTACTAACTCCAATG 58.724 37.037 0.00 0.00 0.00 2.82
1260 1276 5.824421 ACAATGAAGAATGGAGGACAATCT 58.176 37.500 0.00 0.00 41.06 2.40
1271 1287 1.673808 GGACAATCTACGGGAGCGGT 61.674 60.000 0.00 0.00 0.00 5.68
1295 1311 3.846023 GCGGCAGTATTCGATGATTGTTG 60.846 47.826 0.00 0.00 0.00 3.33
1303 1321 9.986833 CAGTATTCGATGATTGTTGTTTTATGA 57.013 29.630 0.00 0.00 0.00 2.15
1317 1335 7.655328 TGTTGTTTTATGACATGTGATTTTCCC 59.345 33.333 1.15 0.00 0.00 3.97
1336 1354 5.431179 TCCCCTTACTAGGTTTGAACATC 57.569 43.478 0.00 0.00 40.19 3.06
1349 1368 5.878669 GGTTTGAACATCGTAATAGGGAAGT 59.121 40.000 0.00 0.00 0.00 3.01
1380 1399 8.618702 AGATATTAAGATGGCTCATGAACTTG 57.381 34.615 0.00 0.00 0.00 3.16
1381 1400 4.970662 TTAAGATGGCTCATGAACTTGC 57.029 40.909 0.00 0.00 0.00 4.01
1382 1401 2.803030 AGATGGCTCATGAACTTGCT 57.197 45.000 0.00 0.00 0.00 3.91
1383 1402 3.920231 AGATGGCTCATGAACTTGCTA 57.080 42.857 0.00 0.00 0.00 3.49
1384 1403 4.226427 AGATGGCTCATGAACTTGCTAA 57.774 40.909 0.00 0.00 0.00 3.09
1385 1404 4.197750 AGATGGCTCATGAACTTGCTAAG 58.802 43.478 0.00 0.00 0.00 2.18
1386 1405 3.423539 TGGCTCATGAACTTGCTAAGT 57.576 42.857 0.00 0.00 45.46 2.24
1387 1406 3.076621 TGGCTCATGAACTTGCTAAGTG 58.923 45.455 0.00 0.00 41.91 3.16
1388 1407 3.077359 GGCTCATGAACTTGCTAAGTGT 58.923 45.455 0.00 0.00 41.91 3.55
1389 1408 3.126000 GGCTCATGAACTTGCTAAGTGTC 59.874 47.826 0.00 4.34 41.91 3.67
1390 1409 3.748048 GCTCATGAACTTGCTAAGTGTCA 59.252 43.478 0.00 8.42 41.91 3.58
1391 1410 4.377841 GCTCATGAACTTGCTAAGTGTCAC 60.378 45.833 0.00 0.00 41.91 3.67
1392 1411 4.702831 TCATGAACTTGCTAAGTGTCACA 58.297 39.130 5.62 0.00 41.91 3.58
1393 1412 5.308014 TCATGAACTTGCTAAGTGTCACAT 58.692 37.500 5.62 0.00 41.91 3.21
1394 1413 5.409520 TCATGAACTTGCTAAGTGTCACATC 59.590 40.000 5.62 0.00 41.91 3.06
1395 1414 4.065088 TGAACTTGCTAAGTGTCACATCC 58.935 43.478 5.62 0.00 41.91 3.51
1396 1415 3.059352 ACTTGCTAAGTGTCACATCCC 57.941 47.619 5.62 0.00 41.01 3.85
1397 1416 2.639839 ACTTGCTAAGTGTCACATCCCT 59.360 45.455 5.62 0.00 41.01 4.20
1398 1417 3.838317 ACTTGCTAAGTGTCACATCCCTA 59.162 43.478 5.62 0.00 41.01 3.53
1399 1418 4.081420 ACTTGCTAAGTGTCACATCCCTAG 60.081 45.833 5.62 0.62 41.01 3.02
1400 1419 3.441101 TGCTAAGTGTCACATCCCTAGT 58.559 45.455 5.62 0.00 0.00 2.57
1401 1420 3.838317 TGCTAAGTGTCACATCCCTAGTT 59.162 43.478 5.62 0.00 0.00 2.24
1402 1421 4.081642 TGCTAAGTGTCACATCCCTAGTTC 60.082 45.833 5.62 0.00 0.00 3.01
1403 1422 4.160626 GCTAAGTGTCACATCCCTAGTTCT 59.839 45.833 5.62 0.00 0.00 3.01
1404 1423 4.543590 AAGTGTCACATCCCTAGTTCTG 57.456 45.455 5.62 0.00 0.00 3.02
1405 1424 2.834549 AGTGTCACATCCCTAGTTCTGG 59.165 50.000 5.62 0.00 0.00 3.86
1406 1425 2.567615 GTGTCACATCCCTAGTTCTGGT 59.432 50.000 0.00 0.00 0.00 4.00
1407 1426 3.767673 GTGTCACATCCCTAGTTCTGGTA 59.232 47.826 0.00 0.00 0.00 3.25
1408 1427 4.222145 GTGTCACATCCCTAGTTCTGGTAA 59.778 45.833 0.00 0.00 0.00 2.85
1409 1428 4.841813 TGTCACATCCCTAGTTCTGGTAAA 59.158 41.667 0.00 0.00 0.00 2.01
1410 1429 5.487488 TGTCACATCCCTAGTTCTGGTAAAT 59.513 40.000 0.00 0.00 0.00 1.40
1411 1430 5.817816 GTCACATCCCTAGTTCTGGTAAATG 59.182 44.000 0.00 0.00 0.00 2.32
1412 1431 5.724370 TCACATCCCTAGTTCTGGTAAATGA 59.276 40.000 0.00 0.00 0.00 2.57
1413 1432 5.817816 CACATCCCTAGTTCTGGTAAATGAC 59.182 44.000 0.00 0.00 0.00 3.06
1427 1446 6.922247 GGTAAATGACCTAGGCTAGTTTTC 57.078 41.667 19.68 12.97 45.89 2.29
1428 1447 5.821470 GGTAAATGACCTAGGCTAGTTTTCC 59.179 44.000 19.68 15.26 45.89 3.13
1429 1448 5.780958 AAATGACCTAGGCTAGTTTTCCT 57.219 39.130 19.68 4.34 36.51 3.36
1430 1449 5.780958 AATGACCTAGGCTAGTTTTCCTT 57.219 39.130 19.68 9.45 34.02 3.36
1431 1450 4.553330 TGACCTAGGCTAGTTTTCCTTG 57.447 45.455 19.68 4.89 34.02 3.61
1432 1451 3.908103 TGACCTAGGCTAGTTTTCCTTGT 59.092 43.478 19.68 8.00 34.02 3.16
1433 1452 4.349930 TGACCTAGGCTAGTTTTCCTTGTT 59.650 41.667 19.68 0.00 34.02 2.83
1434 1453 4.652822 ACCTAGGCTAGTTTTCCTTGTTG 58.347 43.478 19.68 3.03 34.02 3.33
1435 1454 3.440522 CCTAGGCTAGTTTTCCTTGTTGC 59.559 47.826 19.68 0.00 34.02 4.17
1436 1455 2.944129 AGGCTAGTTTTCCTTGTTGCA 58.056 42.857 0.00 0.00 0.00 4.08
1437 1456 3.500343 AGGCTAGTTTTCCTTGTTGCAT 58.500 40.909 0.00 0.00 0.00 3.96
1438 1457 3.507622 AGGCTAGTTTTCCTTGTTGCATC 59.492 43.478 0.00 0.00 0.00 3.91
1439 1458 3.255642 GGCTAGTTTTCCTTGTTGCATCA 59.744 43.478 0.00 0.00 0.00 3.07
1440 1459 4.082026 GGCTAGTTTTCCTTGTTGCATCAT 60.082 41.667 0.00 0.00 0.00 2.45
1441 1460 4.860907 GCTAGTTTTCCTTGTTGCATCATG 59.139 41.667 0.00 1.07 0.00 3.07
1442 1461 4.942761 AGTTTTCCTTGTTGCATCATGT 57.057 36.364 0.00 0.00 0.00 3.21
1443 1462 5.280654 AGTTTTCCTTGTTGCATCATGTT 57.719 34.783 0.00 0.00 0.00 2.71
1444 1463 5.673514 AGTTTTCCTTGTTGCATCATGTTT 58.326 33.333 0.00 0.00 0.00 2.83
1445 1464 6.815089 AGTTTTCCTTGTTGCATCATGTTTA 58.185 32.000 0.00 0.00 0.00 2.01
1446 1465 7.271511 AGTTTTCCTTGTTGCATCATGTTTAA 58.728 30.769 0.00 0.00 0.00 1.52
1447 1466 7.768120 AGTTTTCCTTGTTGCATCATGTTTAAA 59.232 29.630 0.00 0.21 0.00 1.52
1448 1467 8.558700 GTTTTCCTTGTTGCATCATGTTTAAAT 58.441 29.630 0.00 0.00 0.00 1.40
1449 1468 8.674263 TTTCCTTGTTGCATCATGTTTAAATT 57.326 26.923 0.00 0.00 0.00 1.82
1450 1469 7.887996 TCCTTGTTGCATCATGTTTAAATTC 57.112 32.000 0.00 0.00 0.00 2.17
1451 1470 7.440198 TCCTTGTTGCATCATGTTTAAATTCA 58.560 30.769 0.00 0.00 0.00 2.57
1452 1471 7.930325 TCCTTGTTGCATCATGTTTAAATTCAA 59.070 29.630 0.00 0.00 0.00 2.69
1453 1472 8.723311 CCTTGTTGCATCATGTTTAAATTCAAT 58.277 29.630 0.00 0.00 0.00 2.57
1456 1475 9.880064 TGTTGCATCATGTTTAAATTCAATTTG 57.120 25.926 5.56 0.00 33.82 2.32
1474 1493 9.616156 TTCAATTTGAATATGAAATGGGGAATG 57.384 29.630 7.74 0.00 30.26 2.67
1475 1494 8.990203 TCAATTTGAATATGAAATGGGGAATGA 58.010 29.630 0.00 0.00 0.00 2.57
1476 1495 9.048446 CAATTTGAATATGAAATGGGGAATGAC 57.952 33.333 0.00 0.00 0.00 3.06
1477 1496 6.729690 TTGAATATGAAATGGGGAATGACC 57.270 37.500 0.00 0.00 38.08 4.02
1478 1497 5.775268 TGAATATGAAATGGGGAATGACCA 58.225 37.500 0.00 0.00 43.22 4.02
1479 1498 6.200852 TGAATATGAAATGGGGAATGACCAA 58.799 36.000 0.00 0.00 42.17 3.67
1480 1499 6.671340 TGAATATGAAATGGGGAATGACCAAA 59.329 34.615 0.00 0.00 42.17 3.28
1481 1500 7.347748 TGAATATGAAATGGGGAATGACCAAAT 59.652 33.333 0.00 0.00 42.17 2.32
1482 1501 5.619132 ATGAAATGGGGAATGACCAAATC 57.381 39.130 0.00 0.00 42.17 2.17
1483 1502 3.774216 TGAAATGGGGAATGACCAAATCC 59.226 43.478 0.00 0.00 42.17 3.01
1484 1503 3.782413 AATGGGGAATGACCAAATCCT 57.218 42.857 0.00 0.00 42.17 3.24
1485 1504 4.898014 AATGGGGAATGACCAAATCCTA 57.102 40.909 0.00 0.00 42.17 2.94
1486 1505 3.951563 TGGGGAATGACCAAATCCTAG 57.048 47.619 0.00 0.00 41.20 3.02
1487 1506 2.091885 TGGGGAATGACCAAATCCTAGC 60.092 50.000 0.00 0.00 41.20 3.42
1488 1507 2.091885 GGGGAATGACCAAATCCTAGCA 60.092 50.000 0.00 0.00 41.20 3.49
1489 1508 2.952310 GGGAATGACCAAATCCTAGCAC 59.048 50.000 0.00 0.00 41.20 4.40
1490 1509 2.952310 GGAATGACCAAATCCTAGCACC 59.048 50.000 0.00 0.00 38.79 5.01
1491 1510 3.372025 GGAATGACCAAATCCTAGCACCT 60.372 47.826 0.00 0.00 38.79 4.00
1492 1511 3.567478 ATGACCAAATCCTAGCACCTC 57.433 47.619 0.00 0.00 0.00 3.85
1493 1512 2.265367 TGACCAAATCCTAGCACCTCA 58.735 47.619 0.00 0.00 0.00 3.86
1494 1513 2.846206 TGACCAAATCCTAGCACCTCAT 59.154 45.455 0.00 0.00 0.00 2.90
1495 1514 3.266772 TGACCAAATCCTAGCACCTCATT 59.733 43.478 0.00 0.00 0.00 2.57
1496 1515 4.473196 TGACCAAATCCTAGCACCTCATTA 59.527 41.667 0.00 0.00 0.00 1.90
1497 1516 5.045213 TGACCAAATCCTAGCACCTCATTAA 60.045 40.000 0.00 0.00 0.00 1.40
1498 1517 6.018433 ACCAAATCCTAGCACCTCATTAAT 57.982 37.500 0.00 0.00 0.00 1.40
1499 1518 6.064717 ACCAAATCCTAGCACCTCATTAATC 58.935 40.000 0.00 0.00 0.00 1.75
1500 1519 6.126361 ACCAAATCCTAGCACCTCATTAATCT 60.126 38.462 0.00 0.00 0.00 2.40
1501 1520 6.774656 CCAAATCCTAGCACCTCATTAATCTT 59.225 38.462 0.00 0.00 0.00 2.40
1502 1521 7.040823 CCAAATCCTAGCACCTCATTAATCTTC 60.041 40.741 0.00 0.00 0.00 2.87
1503 1522 6.753913 ATCCTAGCACCTCATTAATCTTCA 57.246 37.500 0.00 0.00 0.00 3.02
1504 1523 6.753913 TCCTAGCACCTCATTAATCTTCAT 57.246 37.500 0.00 0.00 0.00 2.57
1505 1524 7.855784 TCCTAGCACCTCATTAATCTTCATA 57.144 36.000 0.00 0.00 0.00 2.15
1506 1525 7.901029 TCCTAGCACCTCATTAATCTTCATAG 58.099 38.462 0.00 0.00 0.00 2.23
1507 1526 7.038729 TCCTAGCACCTCATTAATCTTCATAGG 60.039 40.741 0.00 0.00 0.00 2.57
1508 1527 6.506538 AGCACCTCATTAATCTTCATAGGT 57.493 37.500 0.00 0.00 36.31 3.08
1509 1528 6.904626 AGCACCTCATTAATCTTCATAGGTT 58.095 36.000 0.00 0.00 33.67 3.50
1510 1529 6.995091 AGCACCTCATTAATCTTCATAGGTTC 59.005 38.462 0.00 0.00 33.67 3.62
1511 1530 6.767902 GCACCTCATTAATCTTCATAGGTTCA 59.232 38.462 0.00 0.00 33.67 3.18
1512 1531 7.283127 GCACCTCATTAATCTTCATAGGTTCAA 59.717 37.037 0.00 0.00 33.67 2.69
1513 1532 9.347240 CACCTCATTAATCTTCATAGGTTCAAT 57.653 33.333 0.00 0.00 33.67 2.57
1514 1533 9.927081 ACCTCATTAATCTTCATAGGTTCAATT 57.073 29.630 0.00 0.00 31.95 2.32
1543 1562 7.628769 AATATTTCAATGAACCCAAAATGCC 57.371 32.000 0.00 0.00 0.00 4.40
1544 1563 4.703379 TTTCAATGAACCCAAAATGCCT 57.297 36.364 0.00 0.00 0.00 4.75
1545 1564 4.703379 TTCAATGAACCCAAAATGCCTT 57.297 36.364 0.00 0.00 0.00 4.35
1546 1565 4.270245 TCAATGAACCCAAAATGCCTTC 57.730 40.909 0.00 0.00 0.00 3.46
1547 1566 2.995258 CAATGAACCCAAAATGCCTTCG 59.005 45.455 0.00 0.00 0.00 3.79
1548 1567 0.965439 TGAACCCAAAATGCCTTCGG 59.035 50.000 0.00 0.00 0.00 4.30
1549 1568 1.253100 GAACCCAAAATGCCTTCGGA 58.747 50.000 0.00 0.00 0.00 4.55
1550 1569 1.616374 GAACCCAAAATGCCTTCGGAA 59.384 47.619 0.00 0.00 0.00 4.30
1551 1570 1.710816 ACCCAAAATGCCTTCGGAAA 58.289 45.000 0.00 0.00 0.00 3.13
1552 1571 2.043227 ACCCAAAATGCCTTCGGAAAA 58.957 42.857 0.00 0.00 0.00 2.29
1553 1572 2.637382 ACCCAAAATGCCTTCGGAAAAT 59.363 40.909 0.00 0.00 0.00 1.82
1554 1573 3.072330 ACCCAAAATGCCTTCGGAAAATT 59.928 39.130 0.00 0.00 0.00 1.82
1555 1574 4.071423 CCCAAAATGCCTTCGGAAAATTT 58.929 39.130 0.00 0.00 0.00 1.82
1556 1575 4.518590 CCCAAAATGCCTTCGGAAAATTTT 59.481 37.500 2.28 2.28 0.00 1.82
1557 1576 5.703130 CCCAAAATGCCTTCGGAAAATTTTA 59.297 36.000 2.75 0.00 0.00 1.52
1558 1577 6.374053 CCCAAAATGCCTTCGGAAAATTTTAT 59.626 34.615 2.75 0.00 0.00 1.40
1559 1578 7.242783 CCAAAATGCCTTCGGAAAATTTTATG 58.757 34.615 2.75 0.00 0.00 1.90
1560 1579 7.118971 CCAAAATGCCTTCGGAAAATTTTATGA 59.881 33.333 2.75 2.02 0.00 2.15
1561 1580 8.667463 CAAAATGCCTTCGGAAAATTTTATGAT 58.333 29.630 2.75 0.00 0.00 2.45
1562 1581 8.791327 AAATGCCTTCGGAAAATTTTATGATT 57.209 26.923 2.75 0.00 0.00 2.57
1563 1582 8.791327 AATGCCTTCGGAAAATTTTATGATTT 57.209 26.923 2.75 0.00 0.00 2.17
1564 1583 8.791327 ATGCCTTCGGAAAATTTTATGATTTT 57.209 26.923 2.75 0.00 40.80 1.82
1565 1584 8.027440 TGCCTTCGGAAAATTTTATGATTTTG 57.973 30.769 2.75 0.00 38.85 2.44
1566 1585 7.875041 TGCCTTCGGAAAATTTTATGATTTTGA 59.125 29.630 2.75 0.00 38.85 2.69
1567 1586 8.882736 GCCTTCGGAAAATTTTATGATTTTGAT 58.117 29.630 2.75 0.00 38.85 2.57
1583 1602 7.666623 TGATTTTGATAAAGGTGAAAACCTCC 58.333 34.615 0.00 0.00 39.65 4.30
1584 1603 5.699097 TTTGATAAAGGTGAAAACCTCCG 57.301 39.130 0.00 0.00 39.65 4.63
1585 1604 3.078837 TGATAAAGGTGAAAACCTCCGC 58.921 45.455 0.00 0.00 39.65 5.54
1586 1605 1.900245 TAAAGGTGAAAACCTCCGCC 58.100 50.000 0.00 0.00 39.65 6.13
1587 1606 0.106419 AAAGGTGAAAACCTCCGCCA 60.106 50.000 0.00 0.00 39.65 5.69
1588 1607 0.106419 AAGGTGAAAACCTCCGCCAA 60.106 50.000 0.00 0.00 39.65 4.52
1589 1608 0.106419 AGGTGAAAACCTCCGCCAAA 60.106 50.000 0.00 0.00 34.41 3.28
1590 1609 0.747852 GGTGAAAACCTCCGCCAAAA 59.252 50.000 0.00 0.00 0.00 2.44
1591 1610 1.137282 GGTGAAAACCTCCGCCAAAAA 59.863 47.619 0.00 0.00 0.00 1.94
1614 1633 8.523915 AAAATGATGCACATATTTCTAGGACA 57.476 30.769 0.00 0.00 38.38 4.02
1615 1634 8.701908 AAATGATGCACATATTTCTAGGACAT 57.298 30.769 0.00 0.00 38.38 3.06
1616 1635 8.701908 AATGATGCACATATTTCTAGGACATT 57.298 30.769 0.00 0.00 38.38 2.71
1617 1636 8.701908 ATGATGCACATATTTCTAGGACATTT 57.298 30.769 0.00 0.00 37.46 2.32
1618 1637 8.523915 TGATGCACATATTTCTAGGACATTTT 57.476 30.769 0.00 0.00 0.00 1.82
1619 1638 8.970020 TGATGCACATATTTCTAGGACATTTTT 58.030 29.630 0.00 0.00 0.00 1.94
1620 1639 9.241317 GATGCACATATTTCTAGGACATTTTTG 57.759 33.333 0.00 0.00 0.00 2.44
1621 1640 7.546358 TGCACATATTTCTAGGACATTTTTGG 58.454 34.615 0.00 0.00 0.00 3.28
1622 1641 7.395772 TGCACATATTTCTAGGACATTTTTGGA 59.604 33.333 0.00 0.00 0.00 3.53
1623 1642 8.416329 GCACATATTTCTAGGACATTTTTGGAT 58.584 33.333 0.00 0.00 0.00 3.41
1668 1687 9.706846 GTATTTGAATTTGAGCCATTTAAATGC 57.293 29.630 20.67 15.88 33.89 3.56
1669 1688 7.982761 TTTGAATTTGAGCCATTTAAATGCT 57.017 28.000 20.67 19.61 35.08 3.79
1670 1689 9.669887 ATTTGAATTTGAGCCATTTAAATGCTA 57.330 25.926 20.67 8.67 31.85 3.49
1671 1690 9.669887 TTTGAATTTGAGCCATTTAAATGCTAT 57.330 25.926 20.67 9.61 35.08 2.97
1715 1734 8.738645 ATTCTGAAATTAGTGCTAAGTTAGGG 57.261 34.615 11.84 0.59 34.08 3.53
1719 1738 8.927675 TGAAATTAGTGCTAAGTTAGGGAAAA 57.072 30.769 11.84 0.00 34.08 2.29
1767 1786 5.426833 AGGAGCCTATGGATGATATTGTACC 59.573 44.000 0.00 0.00 0.00 3.34
1771 1790 7.759607 AGCCTATGGATGATATTGTACCTTTT 58.240 34.615 0.00 0.00 0.00 2.27
1772 1791 7.667219 AGCCTATGGATGATATTGTACCTTTTG 59.333 37.037 0.00 0.00 0.00 2.44
1786 1805 6.893759 TGTACCTTTTGTTATTGACGATGTG 58.106 36.000 0.00 0.00 0.00 3.21
1788 1807 5.997385 ACCTTTTGTTATTGACGATGTGAC 58.003 37.500 0.00 0.00 0.00 3.67
1789 1808 5.048991 ACCTTTTGTTATTGACGATGTGACC 60.049 40.000 0.00 0.00 0.00 4.02
1795 1814 7.857734 TGTTATTGACGATGTGACCATTATT 57.142 32.000 0.00 0.00 0.00 1.40
1940 1963 6.127897 CGTGGTGAGCATGTCTCTCATATATA 60.128 42.308 15.20 0.00 41.93 0.86
1969 1992 9.141400 CAACAAGAAGGTTAGAGAGTTGTATAC 57.859 37.037 0.00 0.00 32.68 1.47
2030 2053 8.591072 CATTTAATCGACTAGAGGGGGTTAATA 58.409 37.037 0.00 0.00 0.00 0.98
2147 2174 4.280174 AGTTGAGCATGCATTCAAAGTCTT 59.720 37.500 21.98 3.83 35.29 3.01
2180 2207 3.520290 AAGCATGCAAGTGATGAATGG 57.480 42.857 21.98 0.00 44.30 3.16
2282 2309 3.125316 AGCGAAAATAGCAAAGTCTTCGG 59.875 43.478 4.44 0.00 36.92 4.30
2288 2315 2.859165 AGCAAAGTCTTCGGAATGGA 57.141 45.000 0.00 0.00 0.00 3.41
2293 2320 2.789409 AGTCTTCGGAATGGAAAGGG 57.211 50.000 0.00 0.00 0.00 3.95
2367 2394 2.038557 TGGAACCAGTTGCTAGGAGAAC 59.961 50.000 3.66 0.00 0.00 3.01
2373 2400 4.074970 CCAGTTGCTAGGAGAACACAATT 58.925 43.478 0.00 0.00 0.00 2.32
2386 2413 5.663456 AGAACACAATTGATTTGTTGCACT 58.337 33.333 13.59 3.75 46.51 4.40
2404 2431 4.881273 TGCACTAGTTCAAGTTGTTGTGAT 59.119 37.500 2.11 0.00 34.98 3.06
2413 2440 7.985184 AGTTCAAGTTGTTGTGATAACTCTACA 59.015 33.333 2.11 0.00 36.36 2.74
2414 2441 8.609176 GTTCAAGTTGTTGTGATAACTCTACAA 58.391 33.333 2.11 0.00 36.36 2.41
2424 2451 7.870826 TGTGATAACTCTACAACATTGTTTGG 58.129 34.615 1.98 0.00 42.35 3.28
2425 2452 7.717436 TGTGATAACTCTACAACATTGTTTGGA 59.283 33.333 1.98 0.00 42.35 3.53
2426 2453 8.730680 GTGATAACTCTACAACATTGTTTGGAT 58.269 33.333 1.98 0.00 42.35 3.41
2427 2454 9.952030 TGATAACTCTACAACATTGTTTGGATA 57.048 29.630 1.98 0.00 42.35 2.59
2430 2457 8.635765 AACTCTACAACATTGTTTGGATATGT 57.364 30.769 1.98 0.00 42.35 2.29
2431 2458 8.044060 ACTCTACAACATTGTTTGGATATGTG 57.956 34.615 1.98 0.00 42.35 3.21
2432 2459 7.882791 ACTCTACAACATTGTTTGGATATGTGA 59.117 33.333 1.98 0.00 42.35 3.58
2433 2460 8.806429 TCTACAACATTGTTTGGATATGTGAT 57.194 30.769 1.98 0.00 42.35 3.06
2434 2461 9.898152 TCTACAACATTGTTTGGATATGTGATA 57.102 29.630 1.98 0.00 42.35 2.15
2448 2475 9.830975 TGGATATGTGATATATACAAAATCCGG 57.169 33.333 19.44 0.00 42.12 5.14
2449 2476 9.832445 GGATATGTGATATATACAAAATCCGGT 57.168 33.333 0.00 0.00 36.15 5.28
2453 2480 7.383687 TGTGATATATACAAAATCCGGTCTCC 58.616 38.462 0.00 0.00 0.00 3.71
2454 2481 7.015779 TGTGATATATACAAAATCCGGTCTCCA 59.984 37.037 0.00 0.00 0.00 3.86
2455 2482 7.331193 GTGATATATACAAAATCCGGTCTCCAC 59.669 40.741 0.00 0.00 0.00 4.02
2456 2483 3.992943 ATACAAAATCCGGTCTCCACA 57.007 42.857 0.00 0.00 0.00 4.17
2457 2484 2.649531 ACAAAATCCGGTCTCCACAA 57.350 45.000 0.00 0.00 0.00 3.33
2458 2485 2.938838 ACAAAATCCGGTCTCCACAAA 58.061 42.857 0.00 0.00 0.00 2.83
2459 2486 3.496331 ACAAAATCCGGTCTCCACAAAT 58.504 40.909 0.00 0.00 0.00 2.32
2460 2487 3.506067 ACAAAATCCGGTCTCCACAAATC 59.494 43.478 0.00 0.00 0.00 2.17
2461 2488 3.433306 AAATCCGGTCTCCACAAATCA 57.567 42.857 0.00 0.00 0.00 2.57
2462 2489 2.698855 ATCCGGTCTCCACAAATCAG 57.301 50.000 0.00 0.00 0.00 2.90
2463 2490 0.613260 TCCGGTCTCCACAAATCAGG 59.387 55.000 0.00 0.00 0.00 3.86
2464 2491 0.613260 CCGGTCTCCACAAATCAGGA 59.387 55.000 0.00 0.00 0.00 3.86
2465 2492 1.003118 CCGGTCTCCACAAATCAGGAA 59.997 52.381 0.00 0.00 32.57 3.36
2466 2493 2.552155 CCGGTCTCCACAAATCAGGAAA 60.552 50.000 0.00 0.00 32.57 3.13
2467 2494 3.146066 CGGTCTCCACAAATCAGGAAAA 58.854 45.455 0.00 0.00 32.57 2.29
2468 2495 3.058224 CGGTCTCCACAAATCAGGAAAAC 60.058 47.826 0.00 0.00 32.57 2.43
2469 2496 3.058224 GGTCTCCACAAATCAGGAAAACG 60.058 47.826 0.00 0.00 32.57 3.60
2470 2497 3.813166 GTCTCCACAAATCAGGAAAACGA 59.187 43.478 0.00 0.00 32.57 3.85
2471 2498 4.455877 GTCTCCACAAATCAGGAAAACGAT 59.544 41.667 0.00 0.00 32.57 3.73
2472 2499 4.455533 TCTCCACAAATCAGGAAAACGATG 59.544 41.667 0.00 0.00 32.57 3.84
2473 2500 4.141287 TCCACAAATCAGGAAAACGATGT 58.859 39.130 0.00 0.00 0.00 3.06
2474 2501 5.309638 TCCACAAATCAGGAAAACGATGTA 58.690 37.500 0.00 0.00 0.00 2.29
2475 2502 5.765677 TCCACAAATCAGGAAAACGATGTAA 59.234 36.000 0.00 0.00 0.00 2.41
2476 2503 5.856455 CCACAAATCAGGAAAACGATGTAAC 59.144 40.000 0.00 0.00 0.00 2.50
2477 2504 6.434596 CACAAATCAGGAAAACGATGTAACA 58.565 36.000 0.00 0.00 0.00 2.41
2478 2505 6.915300 CACAAATCAGGAAAACGATGTAACAA 59.085 34.615 0.00 0.00 0.00 2.83
2479 2506 7.433719 CACAAATCAGGAAAACGATGTAACAAA 59.566 33.333 0.00 0.00 0.00 2.83
2480 2507 7.434013 ACAAATCAGGAAAACGATGTAACAAAC 59.566 33.333 0.00 0.00 0.00 2.93
2481 2508 6.877611 ATCAGGAAAACGATGTAACAAACT 57.122 33.333 0.00 0.00 0.00 2.66
2482 2509 7.972832 ATCAGGAAAACGATGTAACAAACTA 57.027 32.000 0.00 0.00 0.00 2.24
2483 2510 7.789273 TCAGGAAAACGATGTAACAAACTAA 57.211 32.000 0.00 0.00 0.00 2.24
2484 2511 8.211116 TCAGGAAAACGATGTAACAAACTAAA 57.789 30.769 0.00 0.00 0.00 1.85
2485 2512 8.675504 TCAGGAAAACGATGTAACAAACTAAAA 58.324 29.630 0.00 0.00 0.00 1.52
2486 2513 9.458374 CAGGAAAACGATGTAACAAACTAAAAT 57.542 29.630 0.00 0.00 0.00 1.82
2487 2514 9.673454 AGGAAAACGATGTAACAAACTAAAATC 57.327 29.630 0.00 0.00 0.00 2.17
2488 2515 9.673454 GGAAAACGATGTAACAAACTAAAATCT 57.327 29.630 0.00 0.00 0.00 2.40
2502 2529 9.586435 CAAACTAAAATCTTGTTTGGAAACTCT 57.414 29.630 9.20 0.00 43.70 3.24
2511 2538 9.620259 ATCTTGTTTGGAAACTCTATCTAATCC 57.380 33.333 4.02 0.00 39.59 3.01
2512 2539 7.764443 TCTTGTTTGGAAACTCTATCTAATCCG 59.236 37.037 4.02 0.00 39.59 4.18
2513 2540 6.942976 TGTTTGGAAACTCTATCTAATCCGT 58.057 36.000 4.02 0.00 39.59 4.69
2514 2541 6.816640 TGTTTGGAAACTCTATCTAATCCGTG 59.183 38.462 4.02 0.00 39.59 4.94
2515 2542 6.785337 TTGGAAACTCTATCTAATCCGTGA 57.215 37.500 0.00 0.00 0.00 4.35
2516 2543 6.785337 TGGAAACTCTATCTAATCCGTGAA 57.215 37.500 0.00 0.00 0.00 3.18
2517 2544 7.361457 TGGAAACTCTATCTAATCCGTGAAT 57.639 36.000 0.00 0.00 0.00 2.57
2518 2545 8.473358 TGGAAACTCTATCTAATCCGTGAATA 57.527 34.615 0.00 0.00 0.00 1.75
2519 2546 9.090103 TGGAAACTCTATCTAATCCGTGAATAT 57.910 33.333 0.00 0.00 0.00 1.28
2530 2557 9.929180 TCTAATCCGTGAATATAGAAAATCTGG 57.071 33.333 0.00 0.00 0.00 3.86
2531 2558 9.712305 CTAATCCGTGAATATAGAAAATCTGGT 57.288 33.333 0.00 0.00 0.00 4.00
2532 2559 8.980481 AATCCGTGAATATAGAAAATCTGGTT 57.020 30.769 0.00 0.00 0.00 3.67
2533 2560 8.980481 ATCCGTGAATATAGAAAATCTGGTTT 57.020 30.769 0.00 0.00 0.00 3.27
2534 2561 8.801882 TCCGTGAATATAGAAAATCTGGTTTT 57.198 30.769 0.00 0.00 42.56 2.43
2543 2570 4.883083 GAAAATCTGGTTTTCCCAAGTCC 58.117 43.478 13.86 0.00 46.44 3.85
2544 2571 3.611025 AATCTGGTTTTCCCAAGTCCA 57.389 42.857 0.00 0.00 44.65 4.02
2545 2572 2.656947 TCTGGTTTTCCCAAGTCCAG 57.343 50.000 0.00 0.00 44.65 3.86
2546 2573 1.144913 TCTGGTTTTCCCAAGTCCAGG 59.855 52.381 9.19 0.00 44.65 4.45
2547 2574 1.144913 CTGGTTTTCCCAAGTCCAGGA 59.855 52.381 0.00 0.00 44.65 3.86
2548 2575 1.786441 TGGTTTTCCCAAGTCCAGGAT 59.214 47.619 0.00 0.00 41.50 3.24
2549 2576 2.178984 TGGTTTTCCCAAGTCCAGGATT 59.821 45.455 0.00 0.00 41.50 3.01
2550 2577 3.239449 GGTTTTCCCAAGTCCAGGATTT 58.761 45.455 0.00 0.00 30.55 2.17
2551 2578 3.258372 GGTTTTCCCAAGTCCAGGATTTC 59.742 47.826 0.00 0.00 30.55 2.17
2552 2579 2.489938 TTCCCAAGTCCAGGATTTCG 57.510 50.000 0.00 0.00 30.55 3.46
2553 2580 0.618458 TCCCAAGTCCAGGATTTCGG 59.382 55.000 2.19 2.19 0.00 4.30
2554 2581 0.394352 CCCAAGTCCAGGATTTCGGG 60.394 60.000 14.07 14.07 0.00 5.14
2555 2582 0.328258 CCAAGTCCAGGATTTCGGGT 59.672 55.000 0.00 0.00 32.28 5.28
2556 2583 1.557832 CCAAGTCCAGGATTTCGGGTA 59.442 52.381 0.00 0.00 32.28 3.69
2557 2584 2.172717 CCAAGTCCAGGATTTCGGGTAT 59.827 50.000 0.00 0.00 32.28 2.73
2558 2585 3.389983 CCAAGTCCAGGATTTCGGGTATA 59.610 47.826 0.00 0.00 32.28 1.47
2559 2586 4.041691 CCAAGTCCAGGATTTCGGGTATAT 59.958 45.833 0.00 0.00 32.28 0.86
2560 2587 4.891992 AGTCCAGGATTTCGGGTATATG 57.108 45.455 0.00 0.00 32.28 1.78
2561 2588 3.583086 AGTCCAGGATTTCGGGTATATGG 59.417 47.826 0.00 0.00 32.28 2.74
2562 2589 3.581332 GTCCAGGATTTCGGGTATATGGA 59.419 47.826 0.00 0.00 33.33 3.41
2563 2590 4.041198 GTCCAGGATTTCGGGTATATGGAA 59.959 45.833 0.00 0.00 37.34 3.53
2564 2591 4.661240 TCCAGGATTTCGGGTATATGGAAA 59.339 41.667 0.00 0.00 32.84 3.13
2565 2592 5.132985 TCCAGGATTTCGGGTATATGGAAAA 59.867 40.000 0.00 0.00 33.81 2.29
2566 2593 5.830991 CCAGGATTTCGGGTATATGGAAAAA 59.169 40.000 0.00 0.00 33.81 1.94
2567 2594 6.238925 CCAGGATTTCGGGTATATGGAAAAAC 60.239 42.308 0.00 0.00 33.81 2.43
2568 2595 6.320164 CAGGATTTCGGGTATATGGAAAAACA 59.680 38.462 0.00 0.00 33.81 2.83
2569 2596 6.893005 AGGATTTCGGGTATATGGAAAAACAA 59.107 34.615 0.00 0.00 33.81 2.83
2570 2597 7.397761 AGGATTTCGGGTATATGGAAAAACAAA 59.602 33.333 0.00 0.00 33.81 2.83
2571 2598 7.704899 GGATTTCGGGTATATGGAAAAACAAAG 59.295 37.037 0.00 0.00 33.81 2.77
2572 2599 7.762588 TTTCGGGTATATGGAAAAACAAAGA 57.237 32.000 0.00 0.00 0.00 2.52
2573 2600 7.948034 TTCGGGTATATGGAAAAACAAAGAT 57.052 32.000 0.00 0.00 0.00 2.40
2574 2601 7.948034 TCGGGTATATGGAAAAACAAAGATT 57.052 32.000 0.00 0.00 0.00 2.40
2575 2602 9.463902 TTCGGGTATATGGAAAAACAAAGATTA 57.536 29.630 0.00 0.00 0.00 1.75
2576 2603 9.116067 TCGGGTATATGGAAAAACAAAGATTAG 57.884 33.333 0.00 0.00 0.00 1.73
2577 2604 8.899771 CGGGTATATGGAAAAACAAAGATTAGT 58.100 33.333 0.00 0.00 0.00 2.24
2608 2635 9.944663 TTTTCCAAAAATGCGATCTACATATAC 57.055 29.630 0.00 0.00 0.00 1.47
2609 2636 8.902540 TTCCAAAAATGCGATCTACATATACT 57.097 30.769 0.00 0.00 0.00 2.12
2610 2637 8.534333 TCCAAAAATGCGATCTACATATACTC 57.466 34.615 0.00 0.00 0.00 2.59
2611 2638 7.328493 TCCAAAAATGCGATCTACATATACTCG 59.672 37.037 0.00 0.00 0.00 4.18
2612 2639 7.328493 CCAAAAATGCGATCTACATATACTCGA 59.672 37.037 0.00 0.00 0.00 4.04
2613 2640 8.864024 CAAAAATGCGATCTACATATACTCGAT 58.136 33.333 0.00 0.00 0.00 3.59
2614 2641 8.621921 AAAATGCGATCTACATATACTCGATC 57.378 34.615 0.00 0.00 0.00 3.69
2621 2648 9.917872 CGATCTACATATACTCGATCGTTAATT 57.082 33.333 15.94 0.56 44.84 1.40
2629 2656 5.697848 ACTCGATCGTTAATTTTTCTCCG 57.302 39.130 15.94 0.00 0.00 4.63
2630 2657 4.032558 ACTCGATCGTTAATTTTTCTCCGC 59.967 41.667 15.94 0.00 0.00 5.54
2631 2658 3.000476 TCGATCGTTAATTTTTCTCCGCG 60.000 43.478 15.94 0.00 0.00 6.46
2632 2659 3.241868 CGATCGTTAATTTTTCTCCGCGT 60.242 43.478 7.03 0.00 0.00 6.01
2633 2660 3.710437 TCGTTAATTTTTCTCCGCGTC 57.290 42.857 4.92 0.00 0.00 5.19
2634 2661 2.412770 TCGTTAATTTTTCTCCGCGTCC 59.587 45.455 4.92 0.00 0.00 4.79
2635 2662 2.765918 GTTAATTTTTCTCCGCGTCCG 58.234 47.619 4.92 0.00 0.00 4.79
2636 2663 2.083167 TAATTTTTCTCCGCGTCCGT 57.917 45.000 4.92 0.00 0.00 4.69
2637 2664 0.794473 AATTTTTCTCCGCGTCCGTC 59.206 50.000 4.92 0.00 0.00 4.79
2638 2665 0.037605 ATTTTTCTCCGCGTCCGTCT 60.038 50.000 4.92 0.00 0.00 4.18
2639 2666 0.249573 TTTTTCTCCGCGTCCGTCTT 60.250 50.000 4.92 0.00 0.00 3.01
2640 2667 0.249573 TTTTCTCCGCGTCCGTCTTT 60.250 50.000 4.92 0.00 0.00 2.52
2641 2668 0.249573 TTTCTCCGCGTCCGTCTTTT 60.250 50.000 4.92 0.00 0.00 2.27
2642 2669 0.249573 TTCTCCGCGTCCGTCTTTTT 60.250 50.000 4.92 0.00 0.00 1.94
2643 2670 0.665369 TCTCCGCGTCCGTCTTTTTC 60.665 55.000 4.92 0.00 0.00 2.29
2644 2671 0.666577 CTCCGCGTCCGTCTTTTTCT 60.667 55.000 4.92 0.00 0.00 2.52
2645 2672 0.665369 TCCGCGTCCGTCTTTTTCTC 60.665 55.000 4.92 0.00 0.00 2.87
2646 2673 0.942410 CCGCGTCCGTCTTTTTCTCA 60.942 55.000 4.92 0.00 0.00 3.27
2647 2674 0.856641 CGCGTCCGTCTTTTTCTCAA 59.143 50.000 0.00 0.00 0.00 3.02
2648 2675 1.396815 CGCGTCCGTCTTTTTCTCAAC 60.397 52.381 0.00 0.00 0.00 3.18
2649 2676 1.595794 GCGTCCGTCTTTTTCTCAACA 59.404 47.619 0.00 0.00 0.00 3.33
2650 2677 2.031191 GCGTCCGTCTTTTTCTCAACAA 59.969 45.455 0.00 0.00 0.00 2.83
2651 2678 3.486209 GCGTCCGTCTTTTTCTCAACAAA 60.486 43.478 0.00 0.00 0.00 2.83
2652 2679 4.026407 CGTCCGTCTTTTTCTCAACAAAC 58.974 43.478 0.00 0.00 0.00 2.93
2653 2680 4.201783 CGTCCGTCTTTTTCTCAACAAACT 60.202 41.667 0.00 0.00 0.00 2.66
2654 2681 5.263948 GTCCGTCTTTTTCTCAACAAACTC 58.736 41.667 0.00 0.00 0.00 3.01
2655 2682 4.033587 TCCGTCTTTTTCTCAACAAACTCG 59.966 41.667 0.00 0.00 0.00 4.18
2656 2683 4.201783 CCGTCTTTTTCTCAACAAACTCGT 60.202 41.667 0.00 0.00 0.00 4.18
2657 2684 4.723862 CGTCTTTTTCTCAACAAACTCGTG 59.276 41.667 0.00 0.00 0.00 4.35
2658 2685 4.495828 GTCTTTTTCTCAACAAACTCGTGC 59.504 41.667 0.00 0.00 0.00 5.34
2659 2686 4.394920 TCTTTTTCTCAACAAACTCGTGCT 59.605 37.500 0.00 0.00 0.00 4.40
2660 2687 3.673746 TTTCTCAACAAACTCGTGCTG 57.326 42.857 0.00 0.00 0.00 4.41
2661 2688 0.937304 TCTCAACAAACTCGTGCTGC 59.063 50.000 0.00 0.00 0.00 5.25
2662 2689 0.383491 CTCAACAAACTCGTGCTGCG 60.383 55.000 0.00 0.00 43.01 5.18
2663 2690 1.087202 TCAACAAACTCGTGCTGCGT 61.087 50.000 0.00 0.00 42.13 5.24
2664 2691 0.925267 CAACAAACTCGTGCTGCGTG 60.925 55.000 0.00 2.24 42.13 5.34
2666 2693 1.368019 CAAACTCGTGCTGCGTGTG 60.368 57.895 9.01 0.00 45.05 3.82
2667 2694 2.534019 AAACTCGTGCTGCGTGTGG 61.534 57.895 9.01 0.00 45.05 4.17
2668 2695 4.969196 ACTCGTGCTGCGTGTGGG 62.969 66.667 7.82 0.00 44.27 4.61
2675 2702 3.726517 CTGCGTGTGGGCGGAAAG 61.727 66.667 0.00 0.00 41.96 2.62
2687 2714 1.459450 GCGGAAAGCCTATCCAAACA 58.541 50.000 1.51 0.00 40.81 2.83
2688 2715 1.816224 GCGGAAAGCCTATCCAAACAA 59.184 47.619 1.51 0.00 40.81 2.83
2689 2716 2.230266 GCGGAAAGCCTATCCAAACAAA 59.770 45.455 1.51 0.00 40.81 2.83
2690 2717 3.833442 CGGAAAGCCTATCCAAACAAAC 58.167 45.455 1.51 0.00 36.74 2.93
2691 2718 3.254657 CGGAAAGCCTATCCAAACAAACA 59.745 43.478 1.51 0.00 36.74 2.83
2692 2719 4.261825 CGGAAAGCCTATCCAAACAAACAA 60.262 41.667 1.51 0.00 36.74 2.83
2693 2720 5.230182 GGAAAGCCTATCCAAACAAACAAG 58.770 41.667 0.00 0.00 36.92 3.16
2694 2721 4.871933 AAGCCTATCCAAACAAACAAGG 57.128 40.909 0.00 0.00 0.00 3.61
2695 2722 4.112634 AGCCTATCCAAACAAACAAGGA 57.887 40.909 0.00 0.00 34.12 3.36
2696 2723 4.479158 AGCCTATCCAAACAAACAAGGAA 58.521 39.130 0.00 0.00 33.17 3.36
2697 2724 4.280929 AGCCTATCCAAACAAACAAGGAAC 59.719 41.667 0.00 0.00 33.17 3.62
2698 2725 4.794169 CCTATCCAAACAAACAAGGAACG 58.206 43.478 0.00 0.00 33.17 3.95
2699 2726 4.277423 CCTATCCAAACAAACAAGGAACGT 59.723 41.667 0.00 0.00 33.17 3.99
2700 2727 3.495670 TCCAAACAAACAAGGAACGTG 57.504 42.857 0.00 0.00 45.09 4.49
2701 2728 3.082548 TCCAAACAAACAAGGAACGTGA 58.917 40.909 0.00 0.00 41.23 4.35
2702 2729 3.119779 TCCAAACAAACAAGGAACGTGAC 60.120 43.478 0.00 0.00 41.23 3.67
2703 2730 3.366476 CCAAACAAACAAGGAACGTGACA 60.366 43.478 0.00 0.00 41.23 3.58
2704 2731 4.230657 CAAACAAACAAGGAACGTGACAA 58.769 39.130 0.00 0.00 41.23 3.18
2705 2732 4.506886 AACAAACAAGGAACGTGACAAA 57.493 36.364 0.00 0.00 41.23 2.83
2706 2733 4.712122 ACAAACAAGGAACGTGACAAAT 57.288 36.364 0.00 0.00 41.23 2.32
2707 2734 5.066968 ACAAACAAGGAACGTGACAAATT 57.933 34.783 0.00 0.00 41.23 1.82
2708 2735 4.862018 ACAAACAAGGAACGTGACAAATTG 59.138 37.500 0.00 0.00 41.23 2.32
2709 2736 3.708563 ACAAGGAACGTGACAAATTGG 57.291 42.857 0.00 0.00 41.23 3.16
2710 2737 3.020984 ACAAGGAACGTGACAAATTGGT 58.979 40.909 0.00 0.00 41.23 3.67
2711 2738 3.445805 ACAAGGAACGTGACAAATTGGTT 59.554 39.130 0.00 0.00 41.23 3.67
2712 2739 3.982576 AGGAACGTGACAAATTGGTTC 57.017 42.857 0.00 1.43 37.00 3.62
2713 2740 3.551846 AGGAACGTGACAAATTGGTTCT 58.448 40.909 10.87 0.00 37.66 3.01
2714 2741 4.710324 AGGAACGTGACAAATTGGTTCTA 58.290 39.130 10.87 0.00 37.66 2.10
2715 2742 4.514066 AGGAACGTGACAAATTGGTTCTAC 59.486 41.667 10.87 0.00 37.66 2.59
2716 2743 4.273969 GGAACGTGACAAATTGGTTCTACA 59.726 41.667 10.87 0.00 37.66 2.74
2717 2744 5.048991 GGAACGTGACAAATTGGTTCTACAT 60.049 40.000 10.87 0.00 37.66 2.29
2718 2745 6.385649 AACGTGACAAATTGGTTCTACATT 57.614 33.333 0.00 0.00 0.00 2.71
2719 2746 6.385649 ACGTGACAAATTGGTTCTACATTT 57.614 33.333 0.00 0.00 0.00 2.32
2720 2747 6.801575 ACGTGACAAATTGGTTCTACATTTT 58.198 32.000 0.00 0.00 0.00 1.82
2721 2748 7.262048 ACGTGACAAATTGGTTCTACATTTTT 58.738 30.769 0.00 0.00 0.00 1.94
2722 2749 7.434013 ACGTGACAAATTGGTTCTACATTTTTC 59.566 33.333 0.00 0.00 0.00 2.29
2723 2750 7.357206 CGTGACAAATTGGTTCTACATTTTTCG 60.357 37.037 0.00 0.00 0.00 3.46
2724 2751 7.434013 GTGACAAATTGGTTCTACATTTTTCGT 59.566 33.333 0.00 0.00 0.00 3.85
2725 2752 8.622157 TGACAAATTGGTTCTACATTTTTCGTA 58.378 29.630 0.00 0.00 0.00 3.43
2726 2753 9.113876 GACAAATTGGTTCTACATTTTTCGTAG 57.886 33.333 0.00 0.00 38.15 3.51
2727 2754 8.626526 ACAAATTGGTTCTACATTTTTCGTAGT 58.373 29.630 0.00 0.00 38.02 2.73
2728 2755 9.113876 CAAATTGGTTCTACATTTTTCGTAGTC 57.886 33.333 0.00 0.00 38.02 2.59
2729 2756 6.790285 TTGGTTCTACATTTTTCGTAGTCC 57.210 37.500 0.00 0.00 38.02 3.85
2730 2757 5.856156 TGGTTCTACATTTTTCGTAGTCCA 58.144 37.500 0.00 0.00 38.42 4.02
2731 2758 6.289834 TGGTTCTACATTTTTCGTAGTCCAA 58.710 36.000 0.13 0.00 38.14 3.53
2732 2759 6.766944 TGGTTCTACATTTTTCGTAGTCCAAA 59.233 34.615 0.13 0.00 38.14 3.28
2733 2760 7.073883 GGTTCTACATTTTTCGTAGTCCAAAC 58.926 38.462 0.00 0.00 38.02 2.93
2734 2761 7.254863 GGTTCTACATTTTTCGTAGTCCAAACA 60.255 37.037 0.00 0.00 38.02 2.83
2735 2762 7.972832 TCTACATTTTTCGTAGTCCAAACAT 57.027 32.000 0.00 0.00 38.02 2.71
2736 2763 8.025243 TCTACATTTTTCGTAGTCCAAACATC 57.975 34.615 0.00 0.00 38.02 3.06
2737 2764 6.877611 ACATTTTTCGTAGTCCAAACATCT 57.122 33.333 0.00 0.00 0.00 2.90
2738 2765 7.272037 ACATTTTTCGTAGTCCAAACATCTT 57.728 32.000 0.00 0.00 0.00 2.40
2739 2766 7.712797 ACATTTTTCGTAGTCCAAACATCTTT 58.287 30.769 0.00 0.00 0.00 2.52
2740 2767 8.194769 ACATTTTTCGTAGTCCAAACATCTTTT 58.805 29.630 0.00 0.00 0.00 2.27
2741 2768 9.030301 CATTTTTCGTAGTCCAAACATCTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
2767 2794 8.760103 TCTATAAACTTGTTACACGCATAACA 57.240 30.769 7.76 7.76 42.05 2.41
2777 2804 9.678941 TTGTTACACGCATAACAATTGATAAAA 57.321 25.926 13.59 0.00 45.61 1.52
2778 2805 9.119329 TGTTACACGCATAACAATTGATAAAAC 57.881 29.630 13.59 3.85 41.09 2.43
2779 2806 9.119329 GTTACACGCATAACAATTGATAAAACA 57.881 29.630 13.59 0.00 35.50 2.83
2780 2807 7.795431 ACACGCATAACAATTGATAAAACAG 57.205 32.000 13.59 0.02 0.00 3.16
2781 2808 7.589395 ACACGCATAACAATTGATAAAACAGA 58.411 30.769 13.59 0.00 0.00 3.41
2782 2809 8.243426 ACACGCATAACAATTGATAAAACAGAT 58.757 29.630 13.59 0.00 0.00 2.90
2783 2810 9.075519 CACGCATAACAATTGATAAAACAGATT 57.924 29.630 13.59 0.00 0.00 2.40
2784 2811 9.638239 ACGCATAACAATTGATAAAACAGATTT 57.362 25.926 13.59 0.00 34.92 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.033090 GGACTCCGAACAACCTTCGT 59.967 55.000 2.14 0.00 40.04 3.85
55 56 5.812642 TCTTGAATATTTCGAGACTCCTTGC 59.187 40.000 3.56 0.00 43.56 4.01
157 158 1.136500 GCGAATTCCCGTAACTCTCCT 59.864 52.381 0.00 0.00 0.00 3.69
252 261 1.608425 CCCTCCCCCTAGTCCAATTT 58.392 55.000 0.00 0.00 0.00 1.82
306 315 5.512298 AGTAGGAGTAGGAGAGAAGGAAAC 58.488 45.833 0.00 0.00 0.00 2.78
361 370 2.020137 CCCTGGGGAGTCCTACTCT 58.980 63.158 9.58 0.00 44.46 3.24
514 525 1.896345 CATCGCTACGATATGACCGG 58.104 55.000 0.00 0.00 45.19 5.28
783 794 0.833287 ATGCATAGCAACGAGAGGGT 59.167 50.000 0.00 0.00 43.62 4.34
852 863 4.647853 ACCAGCTTACGTATATCTGTTGGA 59.352 41.667 16.29 0.00 31.74 3.53
863 874 3.512329 TCCTTCATGAACCAGCTTACGTA 59.488 43.478 3.38 0.00 0.00 3.57
889 900 4.024387 TGAAGTTTGGTACGCATCTTGAAC 60.024 41.667 0.00 0.00 0.00 3.18
890 901 4.130857 TGAAGTTTGGTACGCATCTTGAA 58.869 39.130 0.00 0.00 0.00 2.69
920 931 8.387354 CAACATAGTTTGTCGTTATAGCATGAA 58.613 33.333 0.00 0.00 37.68 2.57
923 934 8.551205 CATCAACATAGTTTGTCGTTATAGCAT 58.449 33.333 0.00 0.00 37.68 3.79
934 945 1.472480 GGGCGCATCAACATAGTTTGT 59.528 47.619 10.83 0.00 41.53 2.83
946 957 1.302832 CATTAGGGGAGGGCGCATC 60.303 63.158 10.83 6.51 0.00 3.91
951 962 0.843984 TAGTTGCATTAGGGGAGGGC 59.156 55.000 0.00 0.00 0.00 5.19
953 964 5.308825 CATTACTAGTTGCATTAGGGGAGG 58.691 45.833 0.00 0.00 0.00 4.30
963 974 1.064758 CCCCCAGCATTACTAGTTGCA 60.065 52.381 19.15 0.00 41.35 4.08
975 986 3.414193 CTGCTCCATCCCCCAGCA 61.414 66.667 0.00 0.00 40.90 4.41
976 987 3.092511 TCTGCTCCATCCCCCAGC 61.093 66.667 0.00 0.00 0.00 4.85
1033 1049 6.098838 ACTGTGTCCTTAAGCAGATCATGATA 59.901 38.462 8.54 0.00 33.57 2.15
1049 1065 2.839098 CAGCCCCAACTGTGTCCT 59.161 61.111 0.00 0.00 32.78 3.85
1070 1086 3.533606 ATCGTCCTTTGTCATCTCTGG 57.466 47.619 0.00 0.00 0.00 3.86
1087 1103 3.631145 ATTTCCGCCAATGATGAATCG 57.369 42.857 0.00 0.00 0.00 3.34
1089 1105 3.705579 TCCAATTTCCGCCAATGATGAAT 59.294 39.130 0.00 0.00 0.00 2.57
1095 1111 1.205417 AGCTTCCAATTTCCGCCAATG 59.795 47.619 0.00 0.00 0.00 2.82
1114 1130 5.124297 TCAATACATCAGCACACCAATGAAG 59.876 40.000 0.00 0.00 0.00 3.02
1117 1133 4.156373 TGTCAATACATCAGCACACCAATG 59.844 41.667 0.00 0.00 0.00 2.82
1173 1189 1.067295 ATCCCACCTTCTGTGCAAGA 58.933 50.000 0.00 0.00 44.01 3.02
1187 1203 5.290493 AGTAATAAGACGATTGCATCCCA 57.710 39.130 0.00 0.00 0.00 4.37
1208 1224 5.902681 TGACTTCCGTATCATTGGAGTTAG 58.097 41.667 0.00 0.00 35.26 2.34
1223 1239 9.655769 CATTCTTCATTGTATTAATGACTTCCG 57.344 33.333 0.00 0.00 36.49 4.30
1230 1246 9.123902 TGTCCTCCATTCTTCATTGTATTAATG 57.876 33.333 0.00 0.00 0.00 1.90
1234 1250 8.057623 AGATTGTCCTCCATTCTTCATTGTATT 58.942 33.333 0.00 0.00 31.33 1.89
1236 1252 6.962182 AGATTGTCCTCCATTCTTCATTGTA 58.038 36.000 0.00 0.00 31.33 2.41
1271 1287 0.392706 ATCATCGAATACTGCCGCCA 59.607 50.000 0.00 0.00 0.00 5.69
1281 1297 9.292846 CATGTCATAAAACAACAATCATCGAAT 57.707 29.630 0.00 0.00 31.81 3.34
1295 1311 6.935167 AGGGGAAAATCACATGTCATAAAAC 58.065 36.000 0.00 0.00 0.00 2.43
1303 1321 5.755849 CCTAGTAAGGGGAAAATCACATGT 58.244 41.667 0.00 0.00 39.48 3.21
1358 1377 6.359804 AGCAAGTTCATGAGCCATCTTAATA 58.640 36.000 5.87 0.00 0.00 0.98
1359 1378 5.198965 AGCAAGTTCATGAGCCATCTTAAT 58.801 37.500 5.87 0.00 0.00 1.40
1360 1379 4.592942 AGCAAGTTCATGAGCCATCTTAA 58.407 39.130 5.87 0.00 0.00 1.85
1361 1380 4.226427 AGCAAGTTCATGAGCCATCTTA 57.774 40.909 5.87 0.00 0.00 2.10
1362 1381 3.083122 AGCAAGTTCATGAGCCATCTT 57.917 42.857 5.87 0.55 0.00 2.40
1363 1382 2.803030 AGCAAGTTCATGAGCCATCT 57.197 45.000 5.87 0.00 0.00 2.90
1364 1383 3.944015 ACTTAGCAAGTTCATGAGCCATC 59.056 43.478 5.87 0.00 39.04 3.51
1365 1384 3.693085 CACTTAGCAAGTTCATGAGCCAT 59.307 43.478 5.87 0.00 40.46 4.40
1366 1385 3.076621 CACTTAGCAAGTTCATGAGCCA 58.923 45.455 5.87 0.00 40.46 4.75
1367 1386 3.077359 ACACTTAGCAAGTTCATGAGCC 58.923 45.455 5.87 0.00 40.46 4.70
1368 1387 3.748048 TGACACTTAGCAAGTTCATGAGC 59.252 43.478 0.50 0.50 40.46 4.26
1369 1388 4.751600 TGTGACACTTAGCAAGTTCATGAG 59.248 41.667 7.20 0.00 40.46 2.90
1370 1389 4.702831 TGTGACACTTAGCAAGTTCATGA 58.297 39.130 7.20 0.00 40.46 3.07
1371 1390 5.391310 GGATGTGACACTTAGCAAGTTCATG 60.391 44.000 7.20 0.00 40.46 3.07
1372 1391 4.697352 GGATGTGACACTTAGCAAGTTCAT 59.303 41.667 7.20 9.16 40.46 2.57
1373 1392 4.065088 GGATGTGACACTTAGCAAGTTCA 58.935 43.478 7.20 5.03 40.46 3.18
1374 1393 3.437049 GGGATGTGACACTTAGCAAGTTC 59.563 47.826 7.20 3.10 40.46 3.01
1375 1394 3.073062 AGGGATGTGACACTTAGCAAGTT 59.927 43.478 7.20 0.00 40.46 2.66
1376 1395 2.639839 AGGGATGTGACACTTAGCAAGT 59.360 45.455 7.20 0.00 44.06 3.16
1377 1396 3.340814 AGGGATGTGACACTTAGCAAG 57.659 47.619 7.20 0.00 0.00 4.01
1378 1397 3.838317 ACTAGGGATGTGACACTTAGCAA 59.162 43.478 7.20 0.00 0.00 3.91
1379 1398 3.441101 ACTAGGGATGTGACACTTAGCA 58.559 45.455 7.20 0.00 0.00 3.49
1380 1399 4.160626 AGAACTAGGGATGTGACACTTAGC 59.839 45.833 7.20 0.00 0.00 3.09
1381 1400 5.394663 CCAGAACTAGGGATGTGACACTTAG 60.395 48.000 7.20 4.17 0.00 2.18
1382 1401 4.466370 CCAGAACTAGGGATGTGACACTTA 59.534 45.833 7.20 0.00 0.00 2.24
1383 1402 3.261897 CCAGAACTAGGGATGTGACACTT 59.738 47.826 7.20 0.00 0.00 3.16
1384 1403 2.834549 CCAGAACTAGGGATGTGACACT 59.165 50.000 7.20 0.00 0.00 3.55
1385 1404 2.567615 ACCAGAACTAGGGATGTGACAC 59.432 50.000 0.00 0.00 0.00 3.67
1386 1405 2.902608 ACCAGAACTAGGGATGTGACA 58.097 47.619 0.00 0.00 0.00 3.58
1387 1406 5.416271 TTTACCAGAACTAGGGATGTGAC 57.584 43.478 0.00 0.00 0.00 3.67
1388 1407 5.724370 TCATTTACCAGAACTAGGGATGTGA 59.276 40.000 0.00 0.00 0.00 3.58
1389 1408 5.817816 GTCATTTACCAGAACTAGGGATGTG 59.182 44.000 0.00 0.00 0.00 3.21
1390 1409 5.990668 GTCATTTACCAGAACTAGGGATGT 58.009 41.667 0.00 0.00 0.00 3.06
1404 1423 7.800220 AAGGAAAACTAGCCTAGGTCATTTACC 60.800 40.741 11.31 6.09 40.32 2.85
1405 1424 6.651086 AGGAAAACTAGCCTAGGTCATTTAC 58.349 40.000 11.31 6.26 31.31 2.01
1406 1425 6.886178 AGGAAAACTAGCCTAGGTCATTTA 57.114 37.500 11.31 0.00 31.31 1.40
1407 1426 5.780958 AGGAAAACTAGCCTAGGTCATTT 57.219 39.130 11.31 5.37 31.31 2.32
1408 1427 5.014228 ACAAGGAAAACTAGCCTAGGTCATT 59.986 40.000 11.31 0.00 33.20 2.57
1409 1428 4.536489 ACAAGGAAAACTAGCCTAGGTCAT 59.464 41.667 11.31 0.00 33.20 3.06
1410 1429 3.908103 ACAAGGAAAACTAGCCTAGGTCA 59.092 43.478 11.31 0.00 33.20 4.02
1411 1430 4.554960 ACAAGGAAAACTAGCCTAGGTC 57.445 45.455 11.31 2.66 33.20 3.85
1412 1431 4.652822 CAACAAGGAAAACTAGCCTAGGT 58.347 43.478 11.31 0.00 33.20 3.08
1413 1432 3.440522 GCAACAAGGAAAACTAGCCTAGG 59.559 47.826 3.67 3.67 33.20 3.02
1414 1433 4.072131 TGCAACAAGGAAAACTAGCCTAG 58.928 43.478 0.00 0.00 33.20 3.02
1415 1434 4.093472 TGCAACAAGGAAAACTAGCCTA 57.907 40.909 0.00 0.00 33.20 3.93
1416 1435 2.944129 TGCAACAAGGAAAACTAGCCT 58.056 42.857 0.00 0.00 35.61 4.58
1417 1436 3.255642 TGATGCAACAAGGAAAACTAGCC 59.744 43.478 0.00 0.00 0.00 3.93
1418 1437 4.503741 TGATGCAACAAGGAAAACTAGC 57.496 40.909 0.00 0.00 0.00 3.42
1419 1438 6.017400 ACATGATGCAACAAGGAAAACTAG 57.983 37.500 0.00 0.00 0.00 2.57
1420 1439 6.403866 AACATGATGCAACAAGGAAAACTA 57.596 33.333 0.00 0.00 0.00 2.24
1421 1440 4.942761 ACATGATGCAACAAGGAAAACT 57.057 36.364 0.00 0.00 0.00 2.66
1422 1441 5.989551 AAACATGATGCAACAAGGAAAAC 57.010 34.783 0.00 0.00 0.00 2.43
1423 1442 8.674263 ATTTAAACATGATGCAACAAGGAAAA 57.326 26.923 0.00 0.23 0.00 2.29
1424 1443 8.674263 AATTTAAACATGATGCAACAAGGAAA 57.326 26.923 0.00 0.33 0.00 3.13
1425 1444 7.930325 TGAATTTAAACATGATGCAACAAGGAA 59.070 29.630 0.00 0.00 0.00 3.36
1426 1445 7.440198 TGAATTTAAACATGATGCAACAAGGA 58.560 30.769 0.00 0.00 0.00 3.36
1427 1446 7.655236 TGAATTTAAACATGATGCAACAAGG 57.345 32.000 0.00 0.00 0.00 3.61
1430 1449 9.880064 CAAATTGAATTTAAACATGATGCAACA 57.120 25.926 2.42 0.00 0.00 3.33
1448 1467 9.616156 CATTCCCCATTTCATATTCAAATTGAA 57.384 29.630 11.10 11.10 41.09 2.69
1449 1468 8.990203 TCATTCCCCATTTCATATTCAAATTGA 58.010 29.630 0.00 0.00 0.00 2.57
1450 1469 9.048446 GTCATTCCCCATTTCATATTCAAATTG 57.952 33.333 0.00 0.00 0.00 2.32
1451 1470 8.212995 GGTCATTCCCCATTTCATATTCAAATT 58.787 33.333 0.00 0.00 0.00 1.82
1452 1471 7.347748 TGGTCATTCCCCATTTCATATTCAAAT 59.652 33.333 0.00 0.00 34.77 2.32
1453 1472 6.671340 TGGTCATTCCCCATTTCATATTCAAA 59.329 34.615 0.00 0.00 34.77 2.69
1454 1473 6.200852 TGGTCATTCCCCATTTCATATTCAA 58.799 36.000 0.00 0.00 34.77 2.69
1455 1474 5.775268 TGGTCATTCCCCATTTCATATTCA 58.225 37.500 0.00 0.00 34.77 2.57
1456 1475 6.729690 TTGGTCATTCCCCATTTCATATTC 57.270 37.500 0.00 0.00 34.77 1.75
1457 1476 7.202121 GGATTTGGTCATTCCCCATTTCATATT 60.202 37.037 0.00 0.00 34.77 1.28
1458 1477 6.270695 GGATTTGGTCATTCCCCATTTCATAT 59.729 38.462 0.00 0.00 34.77 1.78
1459 1478 5.602145 GGATTTGGTCATTCCCCATTTCATA 59.398 40.000 0.00 0.00 34.77 2.15
1460 1479 4.409901 GGATTTGGTCATTCCCCATTTCAT 59.590 41.667 0.00 0.00 34.77 2.57
1461 1480 3.774216 GGATTTGGTCATTCCCCATTTCA 59.226 43.478 0.00 0.00 34.77 2.69
1462 1481 4.033009 AGGATTTGGTCATTCCCCATTTC 58.967 43.478 0.00 0.00 34.77 2.17
1463 1482 4.078932 AGGATTTGGTCATTCCCCATTT 57.921 40.909 0.00 0.00 34.77 2.32
1464 1483 3.782413 AGGATTTGGTCATTCCCCATT 57.218 42.857 0.00 0.00 34.77 3.16
1465 1484 3.437052 GCTAGGATTTGGTCATTCCCCAT 60.437 47.826 0.00 0.00 34.77 4.00
1466 1485 2.091885 GCTAGGATTTGGTCATTCCCCA 60.092 50.000 0.00 0.00 34.77 4.96
1467 1486 2.091885 TGCTAGGATTTGGTCATTCCCC 60.092 50.000 0.00 0.00 34.77 4.81
1468 1487 2.952310 GTGCTAGGATTTGGTCATTCCC 59.048 50.000 0.00 0.00 34.77 3.97
1469 1488 2.952310 GGTGCTAGGATTTGGTCATTCC 59.048 50.000 0.00 0.00 0.00 3.01
1470 1489 3.879892 GAGGTGCTAGGATTTGGTCATTC 59.120 47.826 0.00 0.00 0.00 2.67
1471 1490 3.266772 TGAGGTGCTAGGATTTGGTCATT 59.733 43.478 0.00 0.00 0.00 2.57
1472 1491 2.846206 TGAGGTGCTAGGATTTGGTCAT 59.154 45.455 0.00 0.00 0.00 3.06
1473 1492 2.265367 TGAGGTGCTAGGATTTGGTCA 58.735 47.619 0.00 0.00 0.00 4.02
1474 1493 3.567478 ATGAGGTGCTAGGATTTGGTC 57.433 47.619 0.00 0.00 0.00 4.02
1475 1494 5.450818 TTAATGAGGTGCTAGGATTTGGT 57.549 39.130 0.00 0.00 0.00 3.67
1476 1495 6.302269 AGATTAATGAGGTGCTAGGATTTGG 58.698 40.000 0.00 0.00 0.00 3.28
1477 1496 7.500227 TGAAGATTAATGAGGTGCTAGGATTTG 59.500 37.037 0.00 0.00 0.00 2.32
1478 1497 7.577303 TGAAGATTAATGAGGTGCTAGGATTT 58.423 34.615 0.00 0.00 0.00 2.17
1479 1498 7.141758 TGAAGATTAATGAGGTGCTAGGATT 57.858 36.000 0.00 0.00 0.00 3.01
1480 1499 6.753913 TGAAGATTAATGAGGTGCTAGGAT 57.246 37.500 0.00 0.00 0.00 3.24
1481 1500 6.753913 ATGAAGATTAATGAGGTGCTAGGA 57.246 37.500 0.00 0.00 0.00 2.94
1482 1501 7.102346 CCTATGAAGATTAATGAGGTGCTAGG 58.898 42.308 0.00 0.00 0.00 3.02
1483 1502 7.675062 ACCTATGAAGATTAATGAGGTGCTAG 58.325 38.462 0.00 0.00 34.55 3.42
1484 1503 7.618019 ACCTATGAAGATTAATGAGGTGCTA 57.382 36.000 0.00 0.00 34.55 3.49
1485 1504 6.506538 ACCTATGAAGATTAATGAGGTGCT 57.493 37.500 0.00 0.00 34.55 4.40
1486 1505 6.767902 TGAACCTATGAAGATTAATGAGGTGC 59.232 38.462 0.00 0.00 35.99 5.01
1487 1506 8.737168 TTGAACCTATGAAGATTAATGAGGTG 57.263 34.615 0.00 0.00 35.99 4.00
1488 1507 9.927081 AATTGAACCTATGAAGATTAATGAGGT 57.073 29.630 0.00 0.00 37.43 3.85
1517 1536 8.522003 GGCATTTTGGGTTCATTGAAATATTTT 58.478 29.630 1.43 0.00 0.00 1.82
1518 1537 7.889600 AGGCATTTTGGGTTCATTGAAATATTT 59.110 29.630 0.00 0.00 0.00 1.40
1519 1538 7.404481 AGGCATTTTGGGTTCATTGAAATATT 58.596 30.769 0.00 0.00 0.00 1.28
1520 1539 6.961042 AGGCATTTTGGGTTCATTGAAATAT 58.039 32.000 0.00 0.00 0.00 1.28
1521 1540 6.371595 AGGCATTTTGGGTTCATTGAAATA 57.628 33.333 0.00 0.00 0.00 1.40
1522 1541 5.245584 AGGCATTTTGGGTTCATTGAAAT 57.754 34.783 0.00 0.00 0.00 2.17
1523 1542 4.703379 AGGCATTTTGGGTTCATTGAAA 57.297 36.364 0.00 0.00 0.00 2.69
1524 1543 4.640364 GAAGGCATTTTGGGTTCATTGAA 58.360 39.130 0.00 0.00 0.00 2.69
1525 1544 3.305950 CGAAGGCATTTTGGGTTCATTGA 60.306 43.478 0.00 0.00 0.00 2.57
1526 1545 2.995258 CGAAGGCATTTTGGGTTCATTG 59.005 45.455 0.00 0.00 0.00 2.82
1527 1546 2.028203 CCGAAGGCATTTTGGGTTCATT 60.028 45.455 0.00 0.00 46.14 2.57
1528 1547 1.550072 CCGAAGGCATTTTGGGTTCAT 59.450 47.619 0.00 0.00 46.14 2.57
1529 1548 0.965439 CCGAAGGCATTTTGGGTTCA 59.035 50.000 0.00 0.00 46.14 3.18
1530 1549 3.812577 CCGAAGGCATTTTGGGTTC 57.187 52.632 0.00 0.00 46.14 3.62
1571 1590 0.747852 TTTTGGCGGAGGTTTTCACC 59.252 50.000 0.00 0.00 44.67 4.02
1572 1591 2.588027 TTTTTGGCGGAGGTTTTCAC 57.412 45.000 0.00 0.00 0.00 3.18
1588 1607 8.970020 TGTCCTAGAAATATGTGCATCATTTTT 58.030 29.630 13.29 13.29 39.25 1.94
1589 1608 8.523915 TGTCCTAGAAATATGTGCATCATTTT 57.476 30.769 7.02 3.92 37.91 1.82
1590 1609 8.701908 ATGTCCTAGAAATATGTGCATCATTT 57.298 30.769 7.02 5.26 37.91 2.32
1591 1610 8.701908 AATGTCCTAGAAATATGTGCATCATT 57.298 30.769 7.02 0.00 37.91 2.57
1592 1611 8.701908 AAATGTCCTAGAAATATGTGCATCAT 57.298 30.769 0.00 0.00 40.25 2.45
1593 1612 8.523915 AAAATGTCCTAGAAATATGTGCATCA 57.476 30.769 0.00 0.00 0.00 3.07
1594 1613 9.241317 CAAAAATGTCCTAGAAATATGTGCATC 57.759 33.333 0.00 0.00 0.00 3.91
1595 1614 8.199449 CCAAAAATGTCCTAGAAATATGTGCAT 58.801 33.333 0.00 0.00 0.00 3.96
1596 1615 7.395772 TCCAAAAATGTCCTAGAAATATGTGCA 59.604 33.333 0.00 0.00 0.00 4.57
1597 1616 7.771183 TCCAAAAATGTCCTAGAAATATGTGC 58.229 34.615 0.00 0.00 0.00 4.57
1632 1651 9.255304 GGCTCAAATTCAAATACTTTTGTGTTA 57.745 29.630 0.00 0.00 42.37 2.41
1633 1652 7.768120 TGGCTCAAATTCAAATACTTTTGTGTT 59.232 29.630 0.00 0.00 42.37 3.32
1634 1653 7.271511 TGGCTCAAATTCAAATACTTTTGTGT 58.728 30.769 0.00 0.00 42.37 3.72
1635 1654 7.712264 TGGCTCAAATTCAAATACTTTTGTG 57.288 32.000 0.00 0.00 42.37 3.33
1636 1655 8.907222 AATGGCTCAAATTCAAATACTTTTGT 57.093 26.923 0.00 0.00 42.37 2.83
1642 1661 9.706846 GCATTTAAATGGCTCAAATTCAAATAC 57.293 29.630 25.61 3.24 36.90 1.89
1643 1662 9.669887 AGCATTTAAATGGCTCAAATTCAAATA 57.330 25.926 25.61 0.00 36.90 1.40
1644 1663 8.570068 AGCATTTAAATGGCTCAAATTCAAAT 57.430 26.923 25.61 0.44 36.90 2.32
1645 1664 7.982761 AGCATTTAAATGGCTCAAATTCAAA 57.017 28.000 25.61 0.00 36.90 2.69
1679 1698 8.416329 GCACTAATTTCAGAATATTTGGACCAT 58.584 33.333 0.00 0.00 0.00 3.55
1680 1699 7.615365 AGCACTAATTTCAGAATATTTGGACCA 59.385 33.333 0.00 0.00 0.00 4.02
1681 1700 8.000780 AGCACTAATTTCAGAATATTTGGACC 57.999 34.615 0.00 0.00 0.00 4.46
1689 1708 9.832445 CCCTAACTTAGCACTAATTTCAGAATA 57.168 33.333 0.00 0.00 0.00 1.75
1690 1709 8.548877 TCCCTAACTTAGCACTAATTTCAGAAT 58.451 33.333 0.00 0.00 0.00 2.40
1691 1710 7.913789 TCCCTAACTTAGCACTAATTTCAGAA 58.086 34.615 0.00 0.00 0.00 3.02
1692 1711 7.490657 TCCCTAACTTAGCACTAATTTCAGA 57.509 36.000 0.00 0.00 0.00 3.27
1693 1712 8.561738 TTTCCCTAACTTAGCACTAATTTCAG 57.438 34.615 0.00 0.00 0.00 3.02
1694 1713 8.927675 TTTTCCCTAACTTAGCACTAATTTCA 57.072 30.769 0.00 0.00 0.00 2.69
1719 1738 4.401519 CAGAGCAATCCCTTGTCATGATTT 59.598 41.667 0.00 0.00 34.69 2.17
1724 1743 2.092538 CCTCAGAGCAATCCCTTGTCAT 60.093 50.000 0.00 0.00 34.69 3.06
1767 1786 5.996219 TGGTCACATCGTCAATAACAAAAG 58.004 37.500 0.00 0.00 0.00 2.27
1771 1790 7.857734 AATAATGGTCACATCGTCAATAACA 57.142 32.000 0.00 0.00 35.94 2.41
1772 1791 7.855904 GGAAATAATGGTCACATCGTCAATAAC 59.144 37.037 0.00 0.00 35.94 1.89
1831 1850 1.541310 AAGCGGATCGACTCCAACCA 61.541 55.000 12.45 0.00 45.24 3.67
1835 1856 1.725665 CGTAAGCGGATCGACTCCA 59.274 57.895 12.45 0.00 45.24 3.86
1940 1963 5.234466 ACTCTCTAACCTTCTTGTTGCAT 57.766 39.130 0.00 0.00 0.00 3.96
1987 2010 2.834638 ATGCCTTTCAGGTAGCCAAT 57.165 45.000 0.00 0.00 37.80 3.16
2016 2039 7.533923 AAAAATGTCCTATTAACCCCCTCTA 57.466 36.000 0.00 0.00 0.00 2.43
2108 2132 8.988934 CATGCTCAACTTAGTGTTTCTTTAGTA 58.011 33.333 0.00 0.00 36.63 1.82
2115 2142 4.488126 TGCATGCTCAACTTAGTGTTTC 57.512 40.909 20.33 0.00 36.63 2.78
2117 2144 4.520111 TGAATGCATGCTCAACTTAGTGTT 59.480 37.500 20.33 0.00 39.92 3.32
2118 2145 4.074259 TGAATGCATGCTCAACTTAGTGT 58.926 39.130 20.33 0.00 0.00 3.55
2119 2146 4.690184 TGAATGCATGCTCAACTTAGTG 57.310 40.909 20.33 0.00 0.00 2.74
2130 2157 2.523015 CCGAAGACTTTGAATGCATGC 58.477 47.619 11.82 11.82 0.00 4.06
2147 2174 0.250234 CATGCTTTCCTCTGTCCCGA 59.750 55.000 0.00 0.00 0.00 5.14
2229 2256 7.238486 ACCAATGCCATGTTTTACTTCAATA 57.762 32.000 0.00 0.00 0.00 1.90
2263 2290 6.030228 CCATTCCGAAGACTTTGCTATTTTC 58.970 40.000 0.00 0.00 0.00 2.29
2282 2309 6.209391 TCTGAAGAATTTGACCCTTTCCATTC 59.791 38.462 0.00 0.00 0.00 2.67
2288 2315 4.473444 TGCTCTGAAGAATTTGACCCTTT 58.527 39.130 0.00 0.00 0.00 3.11
2293 2320 4.430137 TGCATGCTCTGAAGAATTTGAC 57.570 40.909 20.33 0.00 0.00 3.18
2373 2400 6.127758 ACAACTTGAACTAGTGCAACAAATCA 60.128 34.615 12.58 0.00 41.43 2.57
2386 2413 9.472361 GTAGAGTTATCACAACAACTTGAACTA 57.528 33.333 0.00 0.00 35.17 2.24
2404 2431 9.733556 ACATATCCAAACAATGTTGTAGAGTTA 57.266 29.630 0.00 0.00 41.31 2.24
2422 2449 9.830975 CCGGATTTTGTATATATCACATATCCA 57.169 33.333 19.31 0.00 37.34 3.41
2423 2450 9.832445 ACCGGATTTTGTATATATCACATATCC 57.168 33.333 9.46 14.58 35.83 2.59
2427 2454 8.041323 GGAGACCGGATTTTGTATATATCACAT 58.959 37.037 9.46 0.00 0.00 3.21
2428 2455 7.015779 TGGAGACCGGATTTTGTATATATCACA 59.984 37.037 9.46 0.00 0.00 3.58
2429 2456 7.331193 GTGGAGACCGGATTTTGTATATATCAC 59.669 40.741 9.46 0.00 0.00 3.06
2430 2457 7.015779 TGTGGAGACCGGATTTTGTATATATCA 59.984 37.037 9.46 0.00 0.00 2.15
2431 2458 7.383687 TGTGGAGACCGGATTTTGTATATATC 58.616 38.462 9.46 0.00 0.00 1.63
2432 2459 7.311092 TGTGGAGACCGGATTTTGTATATAT 57.689 36.000 9.46 0.00 0.00 0.86
2433 2460 6.734502 TGTGGAGACCGGATTTTGTATATA 57.265 37.500 9.46 0.00 0.00 0.86
2434 2461 5.623956 TGTGGAGACCGGATTTTGTATAT 57.376 39.130 9.46 0.00 0.00 0.86
2435 2462 5.423704 TTGTGGAGACCGGATTTTGTATA 57.576 39.130 9.46 0.00 0.00 1.47
2436 2463 3.992943 TGTGGAGACCGGATTTTGTAT 57.007 42.857 9.46 0.00 0.00 2.29
2437 2464 3.773418 TTGTGGAGACCGGATTTTGTA 57.227 42.857 9.46 0.00 0.00 2.41
2438 2465 2.649531 TTGTGGAGACCGGATTTTGT 57.350 45.000 9.46 0.00 0.00 2.83
2439 2466 3.505680 TGATTTGTGGAGACCGGATTTTG 59.494 43.478 9.46 0.00 0.00 2.44
2440 2467 3.758554 CTGATTTGTGGAGACCGGATTTT 59.241 43.478 9.46 0.00 0.00 1.82
2441 2468 3.347216 CTGATTTGTGGAGACCGGATTT 58.653 45.455 9.46 0.00 0.00 2.17
2442 2469 2.356125 CCTGATTTGTGGAGACCGGATT 60.356 50.000 9.46 0.00 0.00 3.01
2443 2470 1.210478 CCTGATTTGTGGAGACCGGAT 59.790 52.381 9.46 0.00 0.00 4.18
2444 2471 0.613260 CCTGATTTGTGGAGACCGGA 59.387 55.000 9.46 0.00 0.00 5.14
2445 2472 0.613260 TCCTGATTTGTGGAGACCGG 59.387 55.000 0.00 0.00 0.00 5.28
2446 2473 2.472695 TTCCTGATTTGTGGAGACCG 57.527 50.000 0.00 0.00 33.46 4.79
2447 2474 3.058224 CGTTTTCCTGATTTGTGGAGACC 60.058 47.826 0.00 0.00 33.46 3.85
2448 2475 3.813166 TCGTTTTCCTGATTTGTGGAGAC 59.187 43.478 0.00 0.00 33.46 3.36
2449 2476 4.079980 TCGTTTTCCTGATTTGTGGAGA 57.920 40.909 0.00 0.00 33.46 3.71
2450 2477 4.216257 ACATCGTTTTCCTGATTTGTGGAG 59.784 41.667 0.00 0.00 33.46 3.86
2451 2478 4.141287 ACATCGTTTTCCTGATTTGTGGA 58.859 39.130 0.00 0.00 0.00 4.02
2452 2479 4.503741 ACATCGTTTTCCTGATTTGTGG 57.496 40.909 0.00 0.00 0.00 4.17
2453 2480 6.434596 TGTTACATCGTTTTCCTGATTTGTG 58.565 36.000 0.00 0.00 0.00 3.33
2454 2481 6.627395 TGTTACATCGTTTTCCTGATTTGT 57.373 33.333 0.00 0.00 0.00 2.83
2455 2482 7.647715 AGTTTGTTACATCGTTTTCCTGATTTG 59.352 33.333 0.00 0.00 0.00 2.32
2456 2483 7.712797 AGTTTGTTACATCGTTTTCCTGATTT 58.287 30.769 0.00 0.00 0.00 2.17
2457 2484 7.272037 AGTTTGTTACATCGTTTTCCTGATT 57.728 32.000 0.00 0.00 0.00 2.57
2458 2485 6.877611 AGTTTGTTACATCGTTTTCCTGAT 57.122 33.333 0.00 0.00 0.00 2.90
2459 2486 7.789273 TTAGTTTGTTACATCGTTTTCCTGA 57.211 32.000 0.00 0.00 0.00 3.86
2460 2487 8.844441 TTTTAGTTTGTTACATCGTTTTCCTG 57.156 30.769 0.00 0.00 0.00 3.86
2461 2488 9.673454 GATTTTAGTTTGTTACATCGTTTTCCT 57.327 29.630 0.00 0.00 0.00 3.36
2462 2489 9.673454 AGATTTTAGTTTGTTACATCGTTTTCC 57.327 29.630 0.00 0.00 0.00 3.13
2474 2501 9.719355 AGTTTCCAAACAAGATTTTAGTTTGTT 57.281 25.926 13.95 2.56 46.43 2.83
2475 2502 9.366216 GAGTTTCCAAACAAGATTTTAGTTTGT 57.634 29.630 13.95 0.00 46.43 2.83
2485 2512 9.620259 GGATTAGATAGAGTTTCCAAACAAGAT 57.380 33.333 5.03 0.00 41.30 2.40
2486 2513 7.764443 CGGATTAGATAGAGTTTCCAAACAAGA 59.236 37.037 5.03 0.00 41.30 3.02
2487 2514 7.549488 ACGGATTAGATAGAGTTTCCAAACAAG 59.451 37.037 5.03 0.00 41.30 3.16
2488 2515 7.333423 CACGGATTAGATAGAGTTTCCAAACAA 59.667 37.037 5.03 0.00 41.30 2.83
2489 2516 6.816640 CACGGATTAGATAGAGTTTCCAAACA 59.183 38.462 5.03 0.00 41.30 2.83
2490 2517 7.039882 TCACGGATTAGATAGAGTTTCCAAAC 58.960 38.462 0.00 0.00 39.17 2.93
2491 2518 7.177832 TCACGGATTAGATAGAGTTTCCAAA 57.822 36.000 0.00 0.00 0.00 3.28
2492 2519 6.785337 TCACGGATTAGATAGAGTTTCCAA 57.215 37.500 0.00 0.00 0.00 3.53
2493 2520 6.785337 TTCACGGATTAGATAGAGTTTCCA 57.215 37.500 0.00 0.00 0.00 3.53
2504 2531 9.929180 CCAGATTTTCTATATTCACGGATTAGA 57.071 33.333 0.00 0.00 0.00 2.10
2505 2532 9.712305 ACCAGATTTTCTATATTCACGGATTAG 57.288 33.333 0.00 0.00 0.00 1.73
2507 2534 8.980481 AACCAGATTTTCTATATTCACGGATT 57.020 30.769 0.00 0.00 0.00 3.01
2508 2535 8.980481 AAACCAGATTTTCTATATTCACGGAT 57.020 30.769 0.00 0.00 0.00 4.18
2509 2536 8.801882 AAAACCAGATTTTCTATATTCACGGA 57.198 30.769 0.00 0.00 35.49 4.69
2529 2556 2.604912 ATCCTGGACTTGGGAAAACC 57.395 50.000 0.00 0.00 40.81 3.27
2530 2557 3.057526 CGAAATCCTGGACTTGGGAAAAC 60.058 47.826 0.00 0.00 35.08 2.43
2531 2558 3.153919 CGAAATCCTGGACTTGGGAAAA 58.846 45.455 0.00 0.00 35.08 2.29
2532 2559 2.554344 CCGAAATCCTGGACTTGGGAAA 60.554 50.000 12.90 0.00 35.08 3.13
2533 2560 1.004277 CCGAAATCCTGGACTTGGGAA 59.996 52.381 12.90 0.00 35.08 3.97
2534 2561 0.618458 CCGAAATCCTGGACTTGGGA 59.382 55.000 12.90 0.00 35.96 4.37
2535 2562 0.394352 CCCGAAATCCTGGACTTGGG 60.394 60.000 11.45 11.45 0.00 4.12
2536 2563 0.328258 ACCCGAAATCCTGGACTTGG 59.672 55.000 0.00 2.60 0.00 3.61
2537 2564 3.560636 ATACCCGAAATCCTGGACTTG 57.439 47.619 0.00 0.00 0.00 3.16
2538 2565 4.041691 CCATATACCCGAAATCCTGGACTT 59.958 45.833 0.00 0.00 0.00 3.01
2539 2566 3.583086 CCATATACCCGAAATCCTGGACT 59.417 47.826 0.00 0.00 0.00 3.85
2540 2567 3.581332 TCCATATACCCGAAATCCTGGAC 59.419 47.826 0.00 0.00 0.00 4.02
2541 2568 3.864328 TCCATATACCCGAAATCCTGGA 58.136 45.455 0.00 0.00 0.00 3.86
2542 2569 4.634012 TTCCATATACCCGAAATCCTGG 57.366 45.455 0.00 0.00 0.00 4.45
2543 2570 6.320164 TGTTTTTCCATATACCCGAAATCCTG 59.680 38.462 0.00 0.00 0.00 3.86
2544 2571 6.428295 TGTTTTTCCATATACCCGAAATCCT 58.572 36.000 0.00 0.00 0.00 3.24
2545 2572 6.702716 TGTTTTTCCATATACCCGAAATCC 57.297 37.500 0.00 0.00 0.00 3.01
2546 2573 8.463607 TCTTTGTTTTTCCATATACCCGAAATC 58.536 33.333 0.00 0.00 0.00 2.17
2547 2574 8.356000 TCTTTGTTTTTCCATATACCCGAAAT 57.644 30.769 0.00 0.00 0.00 2.17
2548 2575 7.762588 TCTTTGTTTTTCCATATACCCGAAA 57.237 32.000 0.00 0.00 0.00 3.46
2549 2576 7.948034 ATCTTTGTTTTTCCATATACCCGAA 57.052 32.000 0.00 0.00 0.00 4.30
2550 2577 7.948034 AATCTTTGTTTTTCCATATACCCGA 57.052 32.000 0.00 0.00 0.00 5.14
2551 2578 8.899771 ACTAATCTTTGTTTTTCCATATACCCG 58.100 33.333 0.00 0.00 0.00 5.28
2582 2609 9.944663 GTATATGTAGATCGCATTTTTGGAAAA 57.055 29.630 10.29 0.00 0.00 2.29
2583 2610 9.337396 AGTATATGTAGATCGCATTTTTGGAAA 57.663 29.630 10.29 0.00 0.00 3.13
2584 2611 8.902540 AGTATATGTAGATCGCATTTTTGGAA 57.097 30.769 10.29 0.00 0.00 3.53
2585 2612 7.328493 CGAGTATATGTAGATCGCATTTTTGGA 59.672 37.037 10.29 0.00 0.00 3.53
2586 2613 7.328493 TCGAGTATATGTAGATCGCATTTTTGG 59.672 37.037 10.29 0.09 33.57 3.28
2587 2614 8.227731 TCGAGTATATGTAGATCGCATTTTTG 57.772 34.615 10.29 1.51 33.57 2.44
2588 2615 8.988064 ATCGAGTATATGTAGATCGCATTTTT 57.012 30.769 10.29 1.69 33.57 1.94
2589 2616 8.621921 GATCGAGTATATGTAGATCGCATTTT 57.378 34.615 10.29 3.58 33.57 1.82
2603 2630 9.125906 CGGAGAAAAATTAACGATCGAGTATAT 57.874 33.333 24.34 4.73 0.00 0.86
2604 2631 7.113965 GCGGAGAAAAATTAACGATCGAGTATA 59.886 37.037 24.34 6.37 0.00 1.47
2605 2632 6.074463 GCGGAGAAAAATTAACGATCGAGTAT 60.074 38.462 24.34 8.38 0.00 2.12
2606 2633 5.230726 GCGGAGAAAAATTAACGATCGAGTA 59.769 40.000 24.34 10.60 0.00 2.59
2607 2634 4.032558 GCGGAGAAAAATTAACGATCGAGT 59.967 41.667 24.34 11.68 0.00 4.18
2608 2635 4.506217 GCGGAGAAAAATTAACGATCGAG 58.494 43.478 24.34 0.00 0.00 4.04
2609 2636 3.000476 CGCGGAGAAAAATTAACGATCGA 60.000 43.478 24.34 0.00 0.00 3.59
2610 2637 3.241868 ACGCGGAGAAAAATTAACGATCG 60.242 43.478 14.88 14.88 0.00 3.69
2611 2638 4.254745 ACGCGGAGAAAAATTAACGATC 57.745 40.909 12.47 0.00 0.00 3.69
2612 2639 3.063045 GGACGCGGAGAAAAATTAACGAT 59.937 43.478 12.47 0.00 0.00 3.73
2613 2640 2.412770 GGACGCGGAGAAAAATTAACGA 59.587 45.455 12.47 0.00 0.00 3.85
2614 2641 2.765918 GGACGCGGAGAAAAATTAACG 58.234 47.619 12.47 0.00 0.00 3.18
2615 2642 2.158254 ACGGACGCGGAGAAAAATTAAC 59.842 45.455 12.47 0.00 0.00 2.01
2616 2643 2.412770 GACGGACGCGGAGAAAAATTAA 59.587 45.455 12.47 0.00 0.00 1.40
2617 2644 1.994779 GACGGACGCGGAGAAAAATTA 59.005 47.619 12.47 0.00 0.00 1.40
2618 2645 0.794473 GACGGACGCGGAGAAAAATT 59.206 50.000 12.47 0.00 0.00 1.82
2619 2646 0.037605 AGACGGACGCGGAGAAAAAT 60.038 50.000 12.47 0.00 0.00 1.82
2620 2647 0.249573 AAGACGGACGCGGAGAAAAA 60.250 50.000 12.47 0.00 0.00 1.94
2621 2648 0.249573 AAAGACGGACGCGGAGAAAA 60.250 50.000 12.47 0.00 0.00 2.29
2622 2649 0.249573 AAAAGACGGACGCGGAGAAA 60.250 50.000 12.47 0.00 0.00 2.52
2623 2650 0.249573 AAAAAGACGGACGCGGAGAA 60.250 50.000 12.47 0.00 0.00 2.87
2624 2651 0.665369 GAAAAAGACGGACGCGGAGA 60.665 55.000 12.47 0.00 0.00 3.71
2625 2652 0.666577 AGAAAAAGACGGACGCGGAG 60.667 55.000 12.47 3.25 0.00 4.63
2626 2653 0.665369 GAGAAAAAGACGGACGCGGA 60.665 55.000 12.47 0.00 0.00 5.54
2627 2654 0.942410 TGAGAAAAAGACGGACGCGG 60.942 55.000 12.47 0.00 0.00 6.46
2628 2655 0.856641 TTGAGAAAAAGACGGACGCG 59.143 50.000 3.53 3.53 0.00 6.01
2629 2656 1.595794 TGTTGAGAAAAAGACGGACGC 59.404 47.619 0.00 0.00 0.00 5.19
2630 2657 3.936902 TTGTTGAGAAAAAGACGGACG 57.063 42.857 0.00 0.00 0.00 4.79
2631 2658 5.231265 AGTTTGTTGAGAAAAAGACGGAC 57.769 39.130 0.00 0.00 0.00 4.79
2632 2659 4.033587 CGAGTTTGTTGAGAAAAAGACGGA 59.966 41.667 0.00 0.00 0.00 4.69
2633 2660 4.201783 ACGAGTTTGTTGAGAAAAAGACGG 60.202 41.667 0.00 0.00 0.00 4.79
2634 2661 4.723862 CACGAGTTTGTTGAGAAAAAGACG 59.276 41.667 0.00 0.00 0.00 4.18
2635 2662 4.495828 GCACGAGTTTGTTGAGAAAAAGAC 59.504 41.667 0.00 0.00 0.00 3.01
2636 2663 4.394920 AGCACGAGTTTGTTGAGAAAAAGA 59.605 37.500 0.00 0.00 0.00 2.52
2637 2664 4.496895 CAGCACGAGTTTGTTGAGAAAAAG 59.503 41.667 0.00 0.00 29.62 2.27
2638 2665 4.411327 CAGCACGAGTTTGTTGAGAAAAA 58.589 39.130 0.00 0.00 29.62 1.94
2639 2666 3.730662 GCAGCACGAGTTTGTTGAGAAAA 60.731 43.478 0.00 0.00 29.62 2.29
2640 2667 2.223249 GCAGCACGAGTTTGTTGAGAAA 60.223 45.455 0.00 0.00 29.62 2.52
2641 2668 1.330521 GCAGCACGAGTTTGTTGAGAA 59.669 47.619 0.00 0.00 29.62 2.87
2642 2669 0.937304 GCAGCACGAGTTTGTTGAGA 59.063 50.000 0.00 0.00 29.62 3.27
2643 2670 3.444657 GCAGCACGAGTTTGTTGAG 57.555 52.632 0.00 0.00 29.62 3.02
2645 2672 3.500013 ACACGCAGCACGAGTTTGTTG 62.500 52.381 6.13 0.00 43.34 3.33
2646 2673 1.366111 ACACGCAGCACGAGTTTGTT 61.366 50.000 6.13 0.00 43.34 2.83
2647 2674 1.813753 ACACGCAGCACGAGTTTGT 60.814 52.632 6.13 0.00 43.34 2.83
2648 2675 1.368019 CACACGCAGCACGAGTTTG 60.368 57.895 6.13 0.00 43.34 2.93
2649 2676 2.534019 CCACACGCAGCACGAGTTT 61.534 57.895 6.13 0.00 43.34 2.66
2650 2677 2.967076 CCACACGCAGCACGAGTT 60.967 61.111 6.13 0.00 43.34 3.01
2651 2678 4.969196 CCCACACGCAGCACGAGT 62.969 66.667 6.13 1.24 46.98 4.18
2658 2685 3.726517 CTTTCCGCCCACACGCAG 61.727 66.667 0.00 0.00 0.00 5.18
2668 2695 1.459450 TGTTTGGATAGGCTTTCCGC 58.541 50.000 17.53 11.35 35.94 5.54
2669 2696 3.254657 TGTTTGTTTGGATAGGCTTTCCG 59.745 43.478 17.53 0.00 35.94 4.30
2670 2697 4.864704 TGTTTGTTTGGATAGGCTTTCC 57.135 40.909 16.16 16.16 0.00 3.13
2671 2698 5.010617 TCCTTGTTTGTTTGGATAGGCTTTC 59.989 40.000 0.00 0.00 0.00 2.62
2672 2699 4.898861 TCCTTGTTTGTTTGGATAGGCTTT 59.101 37.500 0.00 0.00 0.00 3.51
2673 2700 4.479158 TCCTTGTTTGTTTGGATAGGCTT 58.521 39.130 0.00 0.00 0.00 4.35
2674 2701 4.112634 TCCTTGTTTGTTTGGATAGGCT 57.887 40.909 0.00 0.00 0.00 4.58
2675 2702 4.556233 GTTCCTTGTTTGTTTGGATAGGC 58.444 43.478 0.00 0.00 0.00 3.93
2676 2703 4.277423 ACGTTCCTTGTTTGTTTGGATAGG 59.723 41.667 0.00 0.00 0.00 2.57
2677 2704 5.008217 TCACGTTCCTTGTTTGTTTGGATAG 59.992 40.000 0.00 0.00 0.00 2.08
2678 2705 4.882427 TCACGTTCCTTGTTTGTTTGGATA 59.118 37.500 0.00 0.00 0.00 2.59
2679 2706 3.697045 TCACGTTCCTTGTTTGTTTGGAT 59.303 39.130 0.00 0.00 0.00 3.41
2680 2707 3.082548 TCACGTTCCTTGTTTGTTTGGA 58.917 40.909 0.00 0.00 0.00 3.53
2681 2708 3.175929 GTCACGTTCCTTGTTTGTTTGG 58.824 45.455 0.00 0.00 0.00 3.28
2682 2709 3.827625 TGTCACGTTCCTTGTTTGTTTG 58.172 40.909 0.00 0.00 0.00 2.93
2683 2710 4.506886 TTGTCACGTTCCTTGTTTGTTT 57.493 36.364 0.00 0.00 0.00 2.83
2684 2711 4.506886 TTTGTCACGTTCCTTGTTTGTT 57.493 36.364 0.00 0.00 0.00 2.83
2685 2712 4.712122 ATTTGTCACGTTCCTTGTTTGT 57.288 36.364 0.00 0.00 0.00 2.83
2686 2713 4.267452 CCAATTTGTCACGTTCCTTGTTTG 59.733 41.667 0.00 0.00 0.00 2.93
2687 2714 4.081917 ACCAATTTGTCACGTTCCTTGTTT 60.082 37.500 0.00 0.00 0.00 2.83
2688 2715 3.445805 ACCAATTTGTCACGTTCCTTGTT 59.554 39.130 0.00 0.00 0.00 2.83
2689 2716 3.020984 ACCAATTTGTCACGTTCCTTGT 58.979 40.909 0.00 0.00 0.00 3.16
2690 2717 3.708563 ACCAATTTGTCACGTTCCTTG 57.291 42.857 0.00 0.00 0.00 3.61
2691 2718 3.951680 AGAACCAATTTGTCACGTTCCTT 59.048 39.130 10.66 0.00 34.67 3.36
2692 2719 3.551846 AGAACCAATTTGTCACGTTCCT 58.448 40.909 10.66 0.67 34.67 3.36
2693 2720 3.982576 AGAACCAATTTGTCACGTTCC 57.017 42.857 10.66 0.00 34.67 3.62
2694 2721 5.412526 TGTAGAACCAATTTGTCACGTTC 57.587 39.130 7.69 7.69 34.40 3.95
2695 2722 6.385649 AATGTAGAACCAATTTGTCACGTT 57.614 33.333 0.00 0.00 0.00 3.99
2696 2723 6.385649 AAATGTAGAACCAATTTGTCACGT 57.614 33.333 0.00 0.00 0.00 4.49
2697 2724 7.357206 CGAAAAATGTAGAACCAATTTGTCACG 60.357 37.037 0.00 0.00 0.00 4.35
2698 2725 7.434013 ACGAAAAATGTAGAACCAATTTGTCAC 59.566 33.333 0.00 0.00 0.00 3.67
2699 2726 7.484975 ACGAAAAATGTAGAACCAATTTGTCA 58.515 30.769 0.00 0.00 0.00 3.58
2700 2727 7.924103 ACGAAAAATGTAGAACCAATTTGTC 57.076 32.000 0.00 0.00 0.00 3.18
2701 2728 8.626526 ACTACGAAAAATGTAGAACCAATTTGT 58.373 29.630 7.11 0.00 41.44 2.83
2702 2729 9.113876 GACTACGAAAAATGTAGAACCAATTTG 57.886 33.333 7.11 0.00 41.44 2.32
2703 2730 8.294577 GGACTACGAAAAATGTAGAACCAATTT 58.705 33.333 7.11 0.00 41.44 1.82
2704 2731 7.446013 TGGACTACGAAAAATGTAGAACCAATT 59.554 33.333 15.28 0.00 41.54 2.32
2705 2732 6.938030 TGGACTACGAAAAATGTAGAACCAAT 59.062 34.615 15.28 0.00 41.54 3.16
2706 2733 6.289834 TGGACTACGAAAAATGTAGAACCAA 58.710 36.000 15.28 5.84 41.54 3.67
2707 2734 5.856156 TGGACTACGAAAAATGTAGAACCA 58.144 37.500 7.11 11.55 41.44 3.67
2708 2735 6.790285 TTGGACTACGAAAAATGTAGAACC 57.210 37.500 7.11 9.57 41.44 3.62
2709 2736 7.632721 TGTTTGGACTACGAAAAATGTAGAAC 58.367 34.615 7.11 2.40 41.44 3.01
2710 2737 7.789273 TGTTTGGACTACGAAAAATGTAGAA 57.211 32.000 7.11 0.00 41.44 2.10
2711 2738 7.876068 AGATGTTTGGACTACGAAAAATGTAGA 59.124 33.333 7.11 0.00 41.44 2.59
2712 2739 8.029642 AGATGTTTGGACTACGAAAAATGTAG 57.970 34.615 0.00 0.00 43.87 2.74
2713 2740 7.972832 AGATGTTTGGACTACGAAAAATGTA 57.027 32.000 0.00 0.00 0.00 2.29
2714 2741 6.877611 AGATGTTTGGACTACGAAAAATGT 57.122 33.333 0.00 0.00 0.00 2.71
2715 2742 8.574196 AAAAGATGTTTGGACTACGAAAAATG 57.426 30.769 0.00 0.00 0.00 2.32
2741 2768 9.205719 TGTTATGCGTGTAACAAGTTTATAGAA 57.794 29.630 10.86 0.00 40.53 2.10
2742 2769 8.760103 TGTTATGCGTGTAACAAGTTTATAGA 57.240 30.769 10.86 0.00 40.53 1.98
2752 2779 9.119329 GTTTTATCAATTGTTATGCGTGTAACA 57.881 29.630 5.13 9.67 41.44 2.41
2753 2780 9.119329 TGTTTTATCAATTGTTATGCGTGTAAC 57.881 29.630 5.13 5.48 35.60 2.50
2754 2781 9.335891 CTGTTTTATCAATTGTTATGCGTGTAA 57.664 29.630 5.13 0.00 0.00 2.41
2755 2782 8.722394 TCTGTTTTATCAATTGTTATGCGTGTA 58.278 29.630 5.13 0.00 0.00 2.90
2756 2783 7.589395 TCTGTTTTATCAATTGTTATGCGTGT 58.411 30.769 5.13 0.00 0.00 4.49
2757 2784 8.619146 ATCTGTTTTATCAATTGTTATGCGTG 57.381 30.769 5.13 0.00 0.00 5.34
2758 2785 9.638239 AAATCTGTTTTATCAATTGTTATGCGT 57.362 25.926 5.13 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.