Multiple sequence alignment - TraesCS4A01G027800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G027800 chr4A 100.000 4633 0 0 1 4633 19629912 19625280 0.000000e+00 8556.0
1 TraesCS4A01G027800 chr4D 89.287 4490 291 94 44 4436 447632700 447637096 0.000000e+00 5452.0
2 TraesCS4A01G027800 chr4B 91.201 1682 112 23 2794 4466 560009425 560011079 0.000000e+00 2254.0
3 TraesCS4A01G027800 chr4B 89.485 1341 80 23 1556 2872 560008122 560009425 0.000000e+00 1639.0
4 TraesCS4A01G027800 chr4B 88.696 1212 74 28 328 1508 560006944 560008123 0.000000e+00 1421.0
5 TraesCS4A01G027800 chr4B 91.525 118 6 2 4505 4621 560011082 560011196 4.800000e-35 159.0
6 TraesCS4A01G027800 chr4B 91.453 117 3 1 4514 4623 560011197 560011313 2.230000e-33 154.0
7 TraesCS4A01G027800 chr5B 82.853 624 67 16 2522 3130 655713810 655713212 1.480000e-144 523.0
8 TraesCS4A01G027800 chr5B 100.000 32 0 0 2386 2417 655713850 655713819 5.010000e-05 60.2
9 TraesCS4A01G027800 chr6A 81.731 624 74 15 2520 3128 65557259 65556661 6.970000e-133 484.0
10 TraesCS4A01G027800 chrUn 81.327 407 46 13 2728 3130 39184545 39184925 2.090000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G027800 chr4A 19625280 19629912 4632 True 8556.0 8556 100.0000 1 4633 1 chr4A.!!$R1 4632
1 TraesCS4A01G027800 chr4D 447632700 447637096 4396 False 5452.0 5452 89.2870 44 4436 1 chr4D.!!$F1 4392
2 TraesCS4A01G027800 chr4B 560006944 560011313 4369 False 1125.4 2254 90.4720 328 4623 5 chr4B.!!$F1 4295
3 TraesCS4A01G027800 chr5B 655713212 655713850 638 True 291.6 523 91.4265 2386 3130 2 chr5B.!!$R1 744
4 TraesCS4A01G027800 chr6A 65556661 65557259 598 True 484.0 484 81.7310 2520 3128 1 chr6A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 322 0.108615 AGACACGCCTACATGAGCAC 60.109 55.0 0.0 0.0 0.0 4.40 F
319 325 0.108662 CACGCCTACATGAGCACAGA 60.109 55.0 0.0 0.0 0.0 3.41 F
320 326 0.174389 ACGCCTACATGAGCACAGAG 59.826 55.0 0.0 0.0 0.0 3.35 F
1753 1811 0.178990 GAGTTGTTGTTCCAGGGGCT 60.179 55.0 0.0 0.0 0.0 5.19 F
1878 1947 0.808060 GCGGCTACCAGAAGAGAAGC 60.808 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 1186 0.958876 CCAAACCCTTGTACCGAGCC 60.959 60.000 0.0 0.0 0.00 4.70 R
1963 2032 1.305213 CATTTGGGTGGGGGTGAGG 60.305 63.158 0.0 0.0 0.00 3.86 R
1964 2033 1.305213 CCATTTGGGTGGGGGTGAG 60.305 63.158 0.0 0.0 35.55 3.51 R
3308 3525 0.035725 GGGTGGAGTACGGAAAAGGG 60.036 60.000 0.0 0.0 0.00 3.95 R
3803 4028 0.039165 CGCCAGGCAAAGAAGTTTCC 60.039 55.000 13.3 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.746957 AAGGACATCCCAGGAGCC 58.253 61.111 0.00 0.00 37.41 4.70
18 19 2.003548 AAGGACATCCCAGGAGCCC 61.004 63.158 0.00 0.00 37.41 5.19
19 20 3.866582 GGACATCCCAGGAGCCCG 61.867 72.222 0.00 0.00 34.14 6.13
20 21 3.083997 GACATCCCAGGAGCCCGT 61.084 66.667 0.00 0.00 0.00 5.28
21 22 2.610859 ACATCCCAGGAGCCCGTT 60.611 61.111 0.00 0.00 0.00 4.44
22 23 2.124570 CATCCCAGGAGCCCGTTG 60.125 66.667 0.00 0.00 0.00 4.10
23 24 4.115199 ATCCCAGGAGCCCGTTGC 62.115 66.667 0.00 0.00 41.71 4.17
25 26 4.659172 CCCAGGAGCCCGTTGCAA 62.659 66.667 0.00 0.00 44.83 4.08
26 27 2.597217 CCAGGAGCCCGTTGCAAA 60.597 61.111 0.00 0.00 44.83 3.68
27 28 2.199652 CCAGGAGCCCGTTGCAAAA 61.200 57.895 0.00 0.00 44.83 2.44
28 29 1.739049 CAGGAGCCCGTTGCAAAAA 59.261 52.632 0.00 0.00 44.83 1.94
53 54 9.846248 AAAAAGAAGATATTTTTCGGATGTCTG 57.154 29.630 0.00 0.00 35.48 3.51
54 55 7.559590 AAGAAGATATTTTTCGGATGTCTGG 57.440 36.000 0.00 0.00 0.00 3.86
73 74 6.760770 TGTCTGGGAAATTTTGAAAACATCAC 59.239 34.615 0.00 0.00 37.92 3.06
75 76 8.141268 GTCTGGGAAATTTTGAAAACATCACTA 58.859 33.333 7.86 0.00 37.92 2.74
87 88 8.642935 TGAAAACATCACTATTCATACCCAAA 57.357 30.769 0.00 0.00 31.50 3.28
88 89 9.083422 TGAAAACATCACTATTCATACCCAAAA 57.917 29.630 0.00 0.00 31.50 2.44
135 136 4.041723 CGAATGTCCAAACACTCCAAAAC 58.958 43.478 0.00 0.00 38.48 2.43
136 137 4.202010 CGAATGTCCAAACACTCCAAAACT 60.202 41.667 0.00 0.00 38.48 2.66
137 138 4.918810 ATGTCCAAACACTCCAAAACTC 57.081 40.909 0.00 0.00 38.48 3.01
139 140 4.082845 TGTCCAAACACTCCAAAACTCAA 58.917 39.130 0.00 0.00 0.00 3.02
145 149 6.371271 CCAAACACTCCAAAACTCAAAAACAT 59.629 34.615 0.00 0.00 0.00 2.71
225 229 9.902196 ACTATTTTTAATTTTAGTGTTCACCGG 57.098 29.630 0.00 0.00 0.00 5.28
229 233 7.513371 TTTAATTTTAGTGTTCACCGGATGT 57.487 32.000 9.46 0.00 0.00 3.06
230 234 8.618702 TTTAATTTTAGTGTTCACCGGATGTA 57.381 30.769 9.46 0.00 0.00 2.29
231 235 8.795842 TTAATTTTAGTGTTCACCGGATGTAT 57.204 30.769 9.46 0.00 0.00 2.29
232 236 9.887629 TTAATTTTAGTGTTCACCGGATGTATA 57.112 29.630 9.46 0.00 0.00 1.47
233 237 8.974060 AATTTTAGTGTTCACCGGATGTATAT 57.026 30.769 9.46 0.00 0.00 0.86
236 240 9.537192 TTTTAGTGTTCACCGGATGTATATAAG 57.463 33.333 9.46 0.00 0.00 1.73
237 241 6.726490 AGTGTTCACCGGATGTATATAAGT 57.274 37.500 9.46 0.00 0.00 2.24
238 242 6.746120 AGTGTTCACCGGATGTATATAAGTC 58.254 40.000 9.46 0.00 0.00 3.01
239 243 5.924825 GTGTTCACCGGATGTATATAAGTCC 59.075 44.000 9.46 5.09 0.00 3.85
241 245 4.743124 TCACCGGATGTATATAAGTCCCA 58.257 43.478 9.46 0.00 0.00 4.37
242 246 4.770531 TCACCGGATGTATATAAGTCCCAG 59.229 45.833 9.46 4.46 0.00 4.45
243 247 4.770531 CACCGGATGTATATAAGTCCCAGA 59.229 45.833 9.46 0.00 0.00 3.86
258 264 9.862149 ATAAGTCCCAGAACCGAATTAAATTAT 57.138 29.630 0.00 0.00 0.00 1.28
259 265 7.568199 AGTCCCAGAACCGAATTAAATTATG 57.432 36.000 0.00 0.00 0.00 1.90
260 266 7.343357 AGTCCCAGAACCGAATTAAATTATGA 58.657 34.615 0.00 0.00 0.00 2.15
261 267 7.998964 AGTCCCAGAACCGAATTAAATTATGAT 59.001 33.333 0.00 0.00 0.00 2.45
263 269 7.230510 TCCCAGAACCGAATTAAATTATGATGG 59.769 37.037 0.00 0.00 0.00 3.51
265 271 8.292448 CCAGAACCGAATTAAATTATGATGGAG 58.708 37.037 0.00 0.00 0.00 3.86
266 272 9.056005 CAGAACCGAATTAAATTATGATGGAGA 57.944 33.333 0.00 0.00 0.00 3.71
267 273 9.627123 AGAACCGAATTAAATTATGATGGAGAA 57.373 29.630 0.00 0.00 0.00 2.87
283 289 2.200955 GAGAAATGACTCCTTCCCCCT 58.799 52.381 0.00 0.00 0.00 4.79
284 290 1.918957 AGAAATGACTCCTTCCCCCTG 59.081 52.381 0.00 0.00 0.00 4.45
286 292 0.551131 AATGACTCCTTCCCCCTGCT 60.551 55.000 0.00 0.00 0.00 4.24
287 293 1.277580 ATGACTCCTTCCCCCTGCTG 61.278 60.000 0.00 0.00 0.00 4.41
288 294 1.920835 GACTCCTTCCCCCTGCTGT 60.921 63.158 0.00 0.00 0.00 4.40
289 295 1.904990 GACTCCTTCCCCCTGCTGTC 61.905 65.000 0.00 0.00 0.00 3.51
291 297 3.732849 CCTTCCCCCTGCTGTCCC 61.733 72.222 0.00 0.00 0.00 4.46
292 298 4.101448 CTTCCCCCTGCTGTCCCG 62.101 72.222 0.00 0.00 0.00 5.14
313 319 3.242268 CGAGACACGCCTACATGAG 57.758 57.895 0.00 0.00 34.51 2.90
314 320 0.867753 CGAGACACGCCTACATGAGC 60.868 60.000 0.00 0.00 34.51 4.26
315 321 0.173481 GAGACACGCCTACATGAGCA 59.827 55.000 0.00 0.00 0.00 4.26
316 322 0.108615 AGACACGCCTACATGAGCAC 60.109 55.000 0.00 0.00 0.00 4.40
317 323 0.389817 GACACGCCTACATGAGCACA 60.390 55.000 0.00 0.00 0.00 4.57
318 324 0.390340 ACACGCCTACATGAGCACAG 60.390 55.000 0.00 0.00 0.00 3.66
319 325 0.108662 CACGCCTACATGAGCACAGA 60.109 55.000 0.00 0.00 0.00 3.41
320 326 0.174389 ACGCCTACATGAGCACAGAG 59.826 55.000 0.00 0.00 0.00 3.35
321 327 0.529337 CGCCTACATGAGCACAGAGG 60.529 60.000 0.00 5.49 0.00 3.69
322 328 0.813210 GCCTACATGAGCACAGAGGC 60.813 60.000 15.37 15.37 40.49 4.70
323 329 0.538584 CCTACATGAGCACAGAGGCA 59.461 55.000 0.00 0.00 35.83 4.75
324 330 1.649664 CTACATGAGCACAGAGGCAC 58.350 55.000 0.00 0.00 35.83 5.01
325 331 0.250234 TACATGAGCACAGAGGCACC 59.750 55.000 0.00 0.00 35.83 5.01
326 332 2.104859 CATGAGCACAGAGGCACCG 61.105 63.158 0.00 0.00 35.83 4.94
399 405 2.669569 TTGAGCGGTTCAGCCTGC 60.670 61.111 0.00 0.00 37.07 4.85
400 406 3.182590 TTGAGCGGTTCAGCCTGCT 62.183 57.895 0.00 0.00 45.11 4.24
402 408 4.749310 AGCGGTTCAGCCTGCTCG 62.749 66.667 0.00 0.00 41.03 5.03
404 410 2.811317 CGGTTCAGCCTGCTCGTC 60.811 66.667 0.00 0.00 34.25 4.20
405 411 2.435059 GGTTCAGCCTGCTCGTCC 60.435 66.667 0.00 0.00 0.00 4.79
408 414 1.607756 TTCAGCCTGCTCGTCCTCT 60.608 57.895 0.00 0.00 0.00 3.69
419 425 1.748493 CTCGTCCTCTTCCTCTCCAAG 59.252 57.143 0.00 0.00 0.00 3.61
422 428 1.093408 TCCTCTTCCTCTCCAAGGGA 58.907 55.000 0.00 0.00 46.23 4.20
425 431 2.026729 CCTCTTCCTCTCCAAGGGAAAC 60.027 54.545 0.00 0.00 46.23 2.78
520 532 3.216800 GGGGAATATTTTACGGGGACAC 58.783 50.000 0.00 0.00 0.00 3.67
566 578 3.455327 GGTAGCCGAGAATTACAACCTC 58.545 50.000 0.00 0.00 0.00 3.85
599 611 1.338020 CCCTTGCAAGCCGGATATTTC 59.662 52.381 21.43 0.00 0.00 2.17
621 633 4.996758 TCGAAGAAGAATCATGCAGACAAA 59.003 37.500 0.00 0.00 0.00 2.83
629 641 5.302568 AGAATCATGCAGACAAACCTTTTCA 59.697 36.000 0.00 0.00 0.00 2.69
631 643 5.125100 TCATGCAGACAAACCTTTTCATC 57.875 39.130 0.00 0.00 0.00 2.92
633 645 5.302568 TCATGCAGACAAACCTTTTCATCTT 59.697 36.000 0.00 0.00 0.00 2.40
656 668 7.593875 TTTTGACAAAAGAACCACAATGAAG 57.406 32.000 9.30 0.00 0.00 3.02
659 671 5.163426 TGACAAAAGAACCACAATGAAGCAT 60.163 36.000 0.00 0.00 0.00 3.79
660 672 5.291971 ACAAAAGAACCACAATGAAGCATC 58.708 37.500 0.00 0.00 0.00 3.91
661 673 5.163426 ACAAAAGAACCACAATGAAGCATCA 60.163 36.000 0.00 0.00 40.57 3.07
678 697 3.699067 CATCAAATCGTTGAAGATGGCC 58.301 45.455 0.00 0.00 46.66 5.36
694 713 6.067217 AGATGGCCACAAGAAGTTTACTAT 57.933 37.500 8.16 0.00 0.00 2.12
717 740 3.315191 ACACACAGAAAAATCGACCAAGG 59.685 43.478 0.00 0.00 0.00 3.61
720 743 1.202348 CAGAAAAATCGACCAAGGCCC 59.798 52.381 0.00 0.00 0.00 5.80
791 817 6.385649 AATAATGCCGAAAATATTGACCGT 57.614 33.333 0.00 0.00 0.00 4.83
801 827 8.395633 CCGAAAATATTGACCGTAGAGAAAAAT 58.604 33.333 0.00 0.00 0.00 1.82
806 832 6.642683 ATTGACCGTAGAGAAAAATACACG 57.357 37.500 0.00 0.00 0.00 4.49
938 967 0.320421 TCCAGCTTCGAGGTTTTCCG 60.320 55.000 0.00 0.00 46.35 4.30
942 971 1.666872 CTTCGAGGTTTTCCGGCGT 60.667 57.895 6.01 0.00 46.35 5.68
945 974 2.380410 CGAGGTTTTCCGGCGTGAG 61.380 63.158 6.01 0.00 46.35 3.51
946 975 2.032071 AGGTTTTCCGGCGTGAGG 59.968 61.111 6.01 0.00 46.35 3.86
947 976 2.031465 GGTTTTCCGGCGTGAGGA 59.969 61.111 6.01 0.00 35.69 3.71
962 991 0.393673 GAGGAAGGAAGGAAGGCAGC 60.394 60.000 0.00 0.00 0.00 5.25
993 1022 2.757917 GGGAGACTGCGAGAGGCT 60.758 66.667 0.00 0.00 46.14 4.58
1026 1055 2.718073 CGAGTTCCAGGTACGGGGG 61.718 68.421 2.71 0.00 46.04 5.40
1049 1086 1.482278 CAGTCCTATTTCGAGCTCGC 58.518 55.000 30.97 14.22 39.60 5.03
1090 1127 1.214589 GGGTCGCTGCGTCTAGAAA 59.785 57.895 22.48 0.00 0.00 2.52
1204 1241 5.505100 CGATTGAAGCGTATGTATAGTCGAG 59.495 44.000 0.00 0.00 0.00 4.04
1207 1244 2.410939 AGCGTATGTATAGTCGAGCGA 58.589 47.619 0.00 0.00 0.00 4.93
1210 1247 3.970610 GCGTATGTATAGTCGAGCGAAAA 59.029 43.478 0.00 0.00 0.00 2.29
1216 1253 6.132791 TGTATAGTCGAGCGAAAAGAAGAT 57.867 37.500 0.00 0.00 0.00 2.40
1234 1274 1.846439 GATGGGACTGGGATTTCCTCA 59.154 52.381 0.00 0.00 36.20 3.86
1235 1275 1.985622 TGGGACTGGGATTTCCTCAT 58.014 50.000 0.00 0.00 36.20 2.90
1327 1380 9.624373 ATTAGATGTGTGCTCTTCAATTAATCT 57.376 29.630 0.00 0.00 0.00 2.40
1337 1390 7.013274 TGCTCTTCAATTAATCTATTTTCCGGG 59.987 37.037 0.00 0.00 0.00 5.73
1339 1392 8.817092 TCTTCAATTAATCTATTTTCCGGGTT 57.183 30.769 0.00 0.00 0.00 4.11
1430 1485 0.895530 ACCAGTACCCACAGATCACG 59.104 55.000 0.00 0.00 0.00 4.35
1485 1540 8.280497 CAGTAATGTGAACGTAAAGCTTTTAGT 58.720 33.333 18.47 14.50 0.00 2.24
1487 1542 9.737025 GTAATGTGAACGTAAAGCTTTTAGTAG 57.263 33.333 18.47 7.19 0.00 2.57
1511 1566 8.655651 AGAGCTGCTTTAAATAGTCATACTTC 57.344 34.615 2.53 0.00 0.00 3.01
1513 1568 8.655651 AGCTGCTTTAAATAGTCATACTTCTC 57.344 34.615 0.00 0.00 0.00 2.87
1514 1569 8.260818 AGCTGCTTTAAATAGTCATACTTCTCA 58.739 33.333 0.00 0.00 0.00 3.27
1526 1581 6.832384 AGTCATACTTCTCATGGCATGAAATT 59.168 34.615 28.50 20.07 39.11 1.82
1527 1582 6.916387 GTCATACTTCTCATGGCATGAAATTG 59.084 38.462 28.50 17.89 39.11 2.32
1528 1583 4.730949 ACTTCTCATGGCATGAAATTGG 57.269 40.909 28.50 17.54 39.11 3.16
1537 1592 3.055021 TGGCATGAAATTGGCATTGATGT 60.055 39.130 0.00 0.00 46.02 3.06
1540 1595 5.761234 GGCATGAAATTGGCATTGATGTTAT 59.239 36.000 0.00 0.00 41.53 1.89
1543 1598 8.492748 GCATGAAATTGGCATTGATGTTATTAG 58.507 33.333 0.00 0.00 0.00 1.73
1590 1645 7.072177 GCACTAGCACTTTCACATACAAATA 57.928 36.000 0.00 0.00 41.58 1.40
1753 1811 0.178990 GAGTTGTTGTTCCAGGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
1785 1843 7.170965 AGGTTGTCAAATGTCAATCTGTCTAT 58.829 34.615 5.55 0.00 34.23 1.98
1800 1858 9.935682 CAATCTGTCTATTGCGTTGTAAATTAT 57.064 29.630 0.00 0.00 30.59 1.28
1820 1878 9.553064 AAATTATGTTGATTTTGCAACCAAGTA 57.447 25.926 0.00 0.00 45.75 2.24
1826 1884 2.065899 TTTGCAACCAAGTAGGCTGT 57.934 45.000 0.00 0.00 43.14 4.40
1847 1905 7.302524 GCTGTTGTTACGAGAAATTCCATTAA 58.697 34.615 0.00 0.00 0.00 1.40
1848 1906 7.806014 GCTGTTGTTACGAGAAATTCCATTAAA 59.194 33.333 0.00 0.00 0.00 1.52
1878 1947 0.808060 GCGGCTACCAGAAGAGAAGC 60.808 60.000 0.00 0.00 0.00 3.86
1891 1960 7.044181 CCAGAAGAGAAGCAGTAAATCACATA 58.956 38.462 0.00 0.00 0.00 2.29
1892 1961 7.550551 CCAGAAGAGAAGCAGTAAATCACATAA 59.449 37.037 0.00 0.00 0.00 1.90
1956 2025 9.688091 TCTGTATCTATCTATGTGTTATCCCTC 57.312 37.037 0.00 0.00 0.00 4.30
1957 2026 8.824756 TGTATCTATCTATGTGTTATCCCTCC 57.175 38.462 0.00 0.00 0.00 4.30
1958 2027 7.839705 TGTATCTATCTATGTGTTATCCCTCCC 59.160 40.741 0.00 0.00 0.00 4.30
1959 2028 5.590818 TCTATCTATGTGTTATCCCTCCCC 58.409 45.833 0.00 0.00 0.00 4.81
1960 2029 2.986050 TCTATGTGTTATCCCTCCCCC 58.014 52.381 0.00 0.00 0.00 5.40
1961 2030 2.251605 TCTATGTGTTATCCCTCCCCCA 59.748 50.000 0.00 0.00 0.00 4.96
1962 2031 1.222567 ATGTGTTATCCCTCCCCCAC 58.777 55.000 0.00 0.00 0.00 4.61
1963 2032 0.917333 TGTGTTATCCCTCCCCCACC 60.917 60.000 0.00 0.00 0.00 4.61
1964 2033 1.308392 TGTTATCCCTCCCCCACCC 60.308 63.158 0.00 0.00 0.00 4.61
1965 2034 1.005690 GTTATCCCTCCCCCACCCT 59.994 63.158 0.00 0.00 0.00 4.34
1966 2035 1.060743 GTTATCCCTCCCCCACCCTC 61.061 65.000 0.00 0.00 0.00 4.30
1967 2036 1.542093 TTATCCCTCCCCCACCCTCA 61.542 60.000 0.00 0.00 0.00 3.86
2073 2162 6.731467 AGGTCCATGTAAACCATTGTAGATT 58.269 36.000 10.69 0.00 38.06 2.40
2205 2295 3.779183 ACATGGATGACAGTGAAGAGGAT 59.221 43.478 0.00 0.00 0.00 3.24
2275 2365 4.293415 CAAACTTTCAGGTCTGTGCATTC 58.707 43.478 0.00 0.00 0.00 2.67
2634 2741 1.542472 TGCGACGTATGTCCTGAGAAA 59.458 47.619 9.51 0.00 42.37 2.52
2694 2801 3.794717 AGAGCACTTGCATACTGATGAG 58.205 45.455 3.62 0.00 45.16 2.90
2773 2891 7.650903 GGCATTTTGGATGAGAAAGCTATAAAG 59.349 37.037 0.00 0.00 0.00 1.85
2844 3042 9.788960 CCTGCTTTACCTATTTGTTTTCTTATC 57.211 33.333 0.00 0.00 0.00 1.75
3068 3269 8.697507 AAATGAACTAAAATGACTGAAGTCCT 57.302 30.769 7.96 0.00 44.15 3.85
3265 3472 3.909430 TCTGTGAAGTTAACTACCAGCG 58.091 45.455 8.92 4.73 0.00 5.18
3429 3647 0.825840 GAGAGCCTATCTGGACGCCT 60.826 60.000 0.00 0.00 38.84 5.52
3481 3699 4.875561 AGGTACTTTCCAGAGTCTTCAC 57.124 45.455 0.00 0.00 27.25 3.18
3638 3859 0.458543 TCGAAGCTCGTTGATGGCTC 60.459 55.000 0.00 0.00 41.35 4.70
3659 3880 1.802337 TACAGTGTTCGGCAGCGAGT 61.802 55.000 0.00 0.00 0.00 4.18
3696 3918 8.908786 ATGTATCTACATATCACACCAAAAGG 57.091 34.615 1.00 0.00 44.54 3.11
3737 3961 2.357760 GCTTTCGCCGTGTACCCA 60.358 61.111 0.00 0.00 0.00 4.51
3779 4004 2.421775 CACTTGTGTGGTAGTTTGCACA 59.578 45.455 0.00 0.00 40.33 4.57
3781 4006 3.508012 ACTTGTGTGGTAGTTTGCACAAA 59.492 39.130 9.67 0.00 46.67 2.83
3796 4021 3.622163 TGCACAAAACCTGCTTGAAAATG 59.378 39.130 0.00 0.00 35.53 2.32
3800 4025 6.250089 CACAAAACCTGCTTGAAAATGTTTC 58.750 36.000 0.00 0.00 0.00 2.78
3801 4026 5.936956 ACAAAACCTGCTTGAAAATGTTTCA 59.063 32.000 0.00 0.00 0.00 2.69
3803 4028 6.607735 AAACCTGCTTGAAAATGTTTCATG 57.392 33.333 4.37 7.94 0.00 3.07
3844 4069 7.307493 GCGATGATGCCTGTATTGAATAATA 57.693 36.000 0.00 0.00 0.00 0.98
3867 4092 1.601903 TGATTCAGTGTCAACAACGGC 59.398 47.619 0.00 0.00 0.00 5.68
3872 4097 1.529438 CAGTGTCAACAACGGCGTAAT 59.471 47.619 15.20 0.35 0.00 1.89
3879 4104 2.303707 ACAACGGCGTAATGAAAACG 57.696 45.000 15.20 0.00 43.12 3.60
3889 4114 4.728608 GCGTAATGAAAACGGATTCATGTC 59.271 41.667 15.80 11.66 46.57 3.06
3891 4116 5.163804 CGTAATGAAAACGGATTCATGTCCA 60.164 40.000 15.80 3.31 46.57 4.02
3894 4119 3.694072 TGAAAACGGATTCATGTCCATCC 59.306 43.478 9.88 9.88 38.21 3.51
3916 4141 1.098050 ATCCCTGAGAAATGTTGCGC 58.902 50.000 0.00 0.00 0.00 6.09
3920 4145 2.353011 CCCTGAGAAATGTTGCGCAATT 60.353 45.455 27.79 16.94 0.00 2.32
3959 4185 3.085952 TGTGTTCTTGATCAATCCCCC 57.914 47.619 8.96 0.00 0.00 5.40
3964 4190 3.144068 TCTTGATCAATCCCCCTACCA 57.856 47.619 8.96 0.00 0.00 3.25
3970 4196 3.438131 TCAATCCCCCTACCAGATCTT 57.562 47.619 0.00 0.00 0.00 2.40
3981 4207 4.989168 CCTACCAGATCTTGCGTTAATACC 59.011 45.833 0.00 0.00 0.00 2.73
3986 4212 5.007724 CCAGATCTTGCGTTAATACCTTTCC 59.992 44.000 0.00 0.00 0.00 3.13
3989 4215 3.687698 TCTTGCGTTAATACCTTTCCTGC 59.312 43.478 0.00 0.00 0.00 4.85
3990 4216 3.343941 TGCGTTAATACCTTTCCTGCT 57.656 42.857 0.00 0.00 0.00 4.24
3995 4221 4.693566 CGTTAATACCTTTCCTGCTTCACA 59.306 41.667 0.00 0.00 0.00 3.58
3998 4224 1.915141 ACCTTTCCTGCTTCACATGG 58.085 50.000 0.00 0.00 0.00 3.66
4025 4259 2.118313 TGTCCCGTCGTATTCAGAGA 57.882 50.000 0.00 0.00 0.00 3.10
4043 4277 3.764434 AGAGAGACGACTAAATCTTGGCA 59.236 43.478 0.00 0.00 0.00 4.92
4058 4292 6.594788 ATCTTGGCAAATTGTACTGTGATT 57.405 33.333 0.00 0.00 0.00 2.57
4059 4293 5.771469 TCTTGGCAAATTGTACTGTGATTG 58.229 37.500 0.00 0.00 0.00 2.67
4060 4294 3.911868 TGGCAAATTGTACTGTGATTGC 58.088 40.909 11.38 11.38 41.69 3.56
4067 4301 5.789643 ATTGTACTGTGATTGCCAAGTTT 57.210 34.783 0.00 0.00 0.00 2.66
4076 4310 2.285827 TTGCCAAGTTTGTTTGTCCG 57.714 45.000 0.00 0.00 0.00 4.79
4079 4313 1.737363 GCCAAGTTTGTTTGTCCGCAA 60.737 47.619 0.00 0.00 0.00 4.85
4080 4314 2.820330 CCAAGTTTGTTTGTCCGCAAT 58.180 42.857 0.00 0.00 34.18 3.56
4084 4318 3.705604 AGTTTGTTTGTCCGCAATTCTG 58.294 40.909 0.00 0.00 34.18 3.02
4086 4320 2.772568 TGTTTGTCCGCAATTCTGTG 57.227 45.000 0.00 0.00 34.18 3.66
4094 4328 1.136252 CCGCAATTCTGTGAACACTCG 60.136 52.381 6.51 0.00 34.83 4.18
4097 4331 3.421826 CGCAATTCTGTGAACACTCGTAC 60.422 47.826 6.51 0.00 34.83 3.67
4100 4334 4.585955 ATTCTGTGAACACTCGTACTGT 57.414 40.909 6.51 0.00 0.00 3.55
4102 4336 5.503662 TTCTGTGAACACTCGTACTGTTA 57.496 39.130 6.51 0.00 31.83 2.41
4103 4337 4.852138 TCTGTGAACACTCGTACTGTTAC 58.148 43.478 6.51 1.12 31.83 2.50
4104 4338 4.577693 TCTGTGAACACTCGTACTGTTACT 59.422 41.667 6.51 0.00 31.83 2.24
4106 4340 4.096833 TGTGAACACTCGTACTGTTACTGT 59.903 41.667 6.51 0.00 31.83 3.55
4107 4341 4.440103 GTGAACACTCGTACTGTTACTGTG 59.560 45.833 5.14 0.00 36.86 3.66
4108 4342 3.637998 ACACTCGTACTGTTACTGTGG 57.362 47.619 5.14 0.00 35.96 4.17
4109 4343 2.954318 ACACTCGTACTGTTACTGTGGT 59.046 45.455 5.14 0.00 35.96 4.16
4164 4398 7.520451 TTGTACTGTCAGTTGTACTATGAGT 57.480 36.000 11.54 0.00 39.57 3.41
4165 4399 8.625786 TTGTACTGTCAGTTGTACTATGAGTA 57.374 34.615 11.54 0.00 39.57 2.59
4180 4414 9.239002 GTACTATGAGTATGACTGAACATGTTC 57.761 37.037 28.10 28.10 35.28 3.18
4190 4424 4.473444 ACTGAACATGTTCCTGTCCATTT 58.527 39.130 30.66 8.29 38.77 2.32
4376 4610 2.997986 TCGTCGGCTACCAAATTTTCTC 59.002 45.455 0.00 0.00 0.00 2.87
4413 4647 4.929819 AGTCGCCAACTTTTACCAATTT 57.070 36.364 0.00 0.00 33.03 1.82
4430 4664 4.299978 CAATTTTTGGCTTGCCAAAATGG 58.700 39.130 37.08 28.12 45.23 3.16
4450 4684 2.100584 GGCAAATACCGGCATGAAATCA 59.899 45.455 0.00 0.00 0.00 2.57
4477 4711 1.860641 TCGTAAGAGCATCCCCAAGA 58.139 50.000 0.00 0.00 45.01 3.02
4478 4712 1.757118 TCGTAAGAGCATCCCCAAGAG 59.243 52.381 0.00 0.00 45.01 2.85
4479 4713 1.757118 CGTAAGAGCATCCCCAAGAGA 59.243 52.381 0.00 0.00 43.02 3.10
4480 4714 2.366916 CGTAAGAGCATCCCCAAGAGAT 59.633 50.000 0.00 0.00 43.02 2.75
4481 4715 3.737850 GTAAGAGCATCCCCAAGAGATG 58.262 50.000 0.00 0.00 43.31 2.90
4482 4716 1.890552 AGAGCATCCCCAAGAGATGT 58.109 50.000 3.00 0.00 42.58 3.06
4483 4717 1.767681 AGAGCATCCCCAAGAGATGTC 59.232 52.381 3.00 0.00 42.58 3.06
4484 4718 1.487976 GAGCATCCCCAAGAGATGTCA 59.512 52.381 3.00 0.00 42.58 3.58
4485 4719 1.918262 AGCATCCCCAAGAGATGTCAA 59.082 47.619 3.00 0.00 42.58 3.18
4486 4720 2.309755 AGCATCCCCAAGAGATGTCAAA 59.690 45.455 3.00 0.00 42.58 2.69
4487 4721 3.091545 GCATCCCCAAGAGATGTCAAAA 58.908 45.455 3.00 0.00 42.58 2.44
4488 4722 3.511146 GCATCCCCAAGAGATGTCAAAAA 59.489 43.478 3.00 0.00 42.58 1.94
4489 4723 4.619160 GCATCCCCAAGAGATGTCAAAAAC 60.619 45.833 3.00 0.00 42.58 2.43
4490 4724 4.177537 TCCCCAAGAGATGTCAAAAACA 57.822 40.909 0.00 0.00 43.51 2.83
4491 4725 4.144297 TCCCCAAGAGATGTCAAAAACAG 58.856 43.478 0.00 0.00 42.37 3.16
4492 4726 3.305608 CCCCAAGAGATGTCAAAAACAGC 60.306 47.826 0.00 0.00 44.80 4.40
4493 4727 3.305608 CCCAAGAGATGTCAAAAACAGCC 60.306 47.826 0.00 0.00 45.61 4.85
4494 4728 3.558505 CAAGAGATGTCAAAAACAGCCG 58.441 45.455 0.00 0.00 45.61 5.52
4495 4729 2.851195 AGAGATGTCAAAAACAGCCGT 58.149 42.857 0.00 0.00 45.61 5.68
4496 4730 2.549754 AGAGATGTCAAAAACAGCCGTG 59.450 45.455 0.00 0.00 45.61 4.94
4497 4731 1.608590 AGATGTCAAAAACAGCCGTGG 59.391 47.619 0.00 0.00 45.61 4.94
4498 4732 1.336755 GATGTCAAAAACAGCCGTGGT 59.663 47.619 0.00 0.00 42.37 4.16
4499 4733 0.453793 TGTCAAAAACAGCCGTGGTG 59.546 50.000 2.17 2.17 37.06 4.17
4500 4734 0.869880 GTCAAAAACAGCCGTGGTGC 60.870 55.000 3.45 0.00 34.04 5.01
4501 4735 1.591327 CAAAAACAGCCGTGGTGCC 60.591 57.895 3.45 0.00 34.04 5.01
4502 4736 2.791868 AAAAACAGCCGTGGTGCCC 61.792 57.895 3.45 0.00 34.04 5.36
4503 4737 4.514585 AAACAGCCGTGGTGCCCA 62.515 61.111 3.45 0.00 34.04 5.36
4560 4900 0.390472 GCTCCAGCGGATGCCTATAC 60.390 60.000 0.00 0.00 44.31 1.47
4564 4904 4.261888 GCGGATGCCTATACGGTG 57.738 61.111 0.00 0.00 41.05 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.003548 GGGCTCCTGGGATGTCCTT 61.004 63.158 0.00 0.00 36.20 3.36
1 2 2.367512 GGGCTCCTGGGATGTCCT 60.368 66.667 0.00 0.00 36.20 3.85
3 4 2.670148 AACGGGCTCCTGGGATGTC 61.670 63.158 0.00 0.00 0.00 3.06
5 6 2.124570 CAACGGGCTCCTGGGATG 60.125 66.667 0.00 0.00 0.00 3.51
8 9 4.659172 TTGCAACGGGCTCCTGGG 62.659 66.667 0.00 0.00 45.15 4.45
9 10 1.743321 TTTTTGCAACGGGCTCCTGG 61.743 55.000 0.00 0.00 45.15 4.45
10 11 1.739049 TTTTTGCAACGGGCTCCTG 59.261 52.632 0.00 0.00 45.15 3.86
27 28 9.846248 CAGACATCCGAAAAATATCTTCTTTTT 57.154 29.630 0.00 0.00 38.23 1.94
28 29 8.462016 CCAGACATCCGAAAAATATCTTCTTTT 58.538 33.333 0.00 0.00 0.00 2.27
29 30 7.067494 CCCAGACATCCGAAAAATATCTTCTTT 59.933 37.037 0.00 0.00 0.00 2.52
30 31 6.543831 CCCAGACATCCGAAAAATATCTTCTT 59.456 38.462 0.00 0.00 0.00 2.52
31 32 6.058183 CCCAGACATCCGAAAAATATCTTCT 58.942 40.000 0.00 0.00 0.00 2.85
32 33 6.055588 TCCCAGACATCCGAAAAATATCTTC 58.944 40.000 0.00 0.00 0.00 2.87
33 34 6.001449 TCCCAGACATCCGAAAAATATCTT 57.999 37.500 0.00 0.00 0.00 2.40
34 35 5.630415 TCCCAGACATCCGAAAAATATCT 57.370 39.130 0.00 0.00 0.00 1.98
35 36 6.693315 TTTCCCAGACATCCGAAAAATATC 57.307 37.500 0.00 0.00 0.00 1.63
36 37 7.660030 AATTTCCCAGACATCCGAAAAATAT 57.340 32.000 0.00 0.00 0.00 1.28
37 38 7.475137 AAATTTCCCAGACATCCGAAAAATA 57.525 32.000 0.00 0.00 0.00 1.40
38 39 6.358974 AAATTTCCCAGACATCCGAAAAAT 57.641 33.333 0.00 0.00 0.00 1.82
39 40 5.799827 AAATTTCCCAGACATCCGAAAAA 57.200 34.783 0.00 0.00 0.00 1.94
40 41 5.303078 TCAAAATTTCCCAGACATCCGAAAA 59.697 36.000 0.00 0.00 0.00 2.29
41 42 4.830046 TCAAAATTTCCCAGACATCCGAAA 59.170 37.500 0.00 0.00 0.00 3.46
42 43 4.402829 TCAAAATTTCCCAGACATCCGAA 58.597 39.130 0.00 0.00 0.00 4.30
43 44 4.027674 TCAAAATTTCCCAGACATCCGA 57.972 40.909 0.00 0.00 0.00 4.55
44 45 4.782019 TTCAAAATTTCCCAGACATCCG 57.218 40.909 0.00 0.00 0.00 4.18
45 46 6.287525 TGTTTTCAAAATTTCCCAGACATCC 58.712 36.000 0.00 0.00 0.00 3.51
46 47 7.656948 TGATGTTTTCAAAATTTCCCAGACATC 59.343 33.333 19.47 19.47 39.79 3.06
47 48 7.442062 GTGATGTTTTCAAAATTTCCCAGACAT 59.558 33.333 8.35 8.35 35.70 3.06
48 49 6.760770 GTGATGTTTTCAAAATTTCCCAGACA 59.239 34.615 0.00 0.00 35.70 3.41
49 50 6.986231 AGTGATGTTTTCAAAATTTCCCAGAC 59.014 34.615 0.00 0.00 35.70 3.51
50 51 7.123355 AGTGATGTTTTCAAAATTTCCCAGA 57.877 32.000 0.00 0.00 35.70 3.86
51 52 9.492973 AATAGTGATGTTTTCAAAATTTCCCAG 57.507 29.630 0.00 0.00 35.70 4.45
52 53 9.487790 GAATAGTGATGTTTTCAAAATTTCCCA 57.512 29.630 0.00 0.00 35.70 4.37
53 54 9.487790 TGAATAGTGATGTTTTCAAAATTTCCC 57.512 29.630 0.00 0.00 35.70 3.97
102 103 0.798776 GGACATTCGAGGTGCTTGTG 59.201 55.000 4.02 0.00 0.00 3.33
105 106 1.880027 GTTTGGACATTCGAGGTGCTT 59.120 47.619 11.06 0.00 0.00 3.91
136 137 5.658468 TGCTCAAATGTGTGATGTTTTTGA 58.342 33.333 0.00 0.00 35.61 2.69
137 138 5.970140 TGCTCAAATGTGTGATGTTTTTG 57.030 34.783 0.00 0.00 0.00 2.44
139 140 6.092955 AGATGCTCAAATGTGTGATGTTTT 57.907 33.333 0.00 0.00 0.00 2.43
145 149 2.885894 TGCAAGATGCTCAAATGTGTGA 59.114 40.909 3.78 0.00 45.31 3.58
208 212 8.974060 ATATACATCCGGTGAACACTAAAATT 57.026 30.769 0.00 0.00 0.00 1.82
212 216 8.241497 ACTTATATACATCCGGTGAACACTAA 57.759 34.615 0.00 0.00 0.00 2.24
214 218 6.239232 GGACTTATATACATCCGGTGAACACT 60.239 42.308 0.00 0.00 0.00 3.55
215 219 5.924825 GGACTTATATACATCCGGTGAACAC 59.075 44.000 0.00 0.00 0.00 3.32
217 221 5.011329 TGGGACTTATATACATCCGGTGAAC 59.989 44.000 0.00 0.00 31.48 3.18
218 222 5.149239 TGGGACTTATATACATCCGGTGAA 58.851 41.667 0.00 0.00 31.48 3.18
219 223 4.743124 TGGGACTTATATACATCCGGTGA 58.257 43.478 0.00 0.00 31.48 4.02
220 224 4.770531 TCTGGGACTTATATACATCCGGTG 59.229 45.833 0.00 1.37 31.48 4.94
222 226 5.337330 GGTTCTGGGACTTATATACATCCGG 60.337 48.000 0.00 0.00 31.48 5.14
223 227 5.621555 CGGTTCTGGGACTTATATACATCCG 60.622 48.000 5.68 0.00 31.48 4.18
224 228 5.479375 TCGGTTCTGGGACTTATATACATCC 59.521 44.000 3.64 3.64 0.00 3.51
225 229 6.585695 TCGGTTCTGGGACTTATATACATC 57.414 41.667 0.00 0.00 0.00 3.06
226 230 6.989155 TTCGGTTCTGGGACTTATATACAT 57.011 37.500 0.00 0.00 0.00 2.29
227 231 6.989155 ATTCGGTTCTGGGACTTATATACA 57.011 37.500 0.00 0.00 0.00 2.29
230 234 9.862149 AATTTAATTCGGTTCTGGGACTTATAT 57.138 29.630 0.00 0.00 0.00 0.86
232 236 9.862149 ATAATTTAATTCGGTTCTGGGACTTAT 57.138 29.630 0.00 0.00 0.00 1.73
233 237 9.116067 CATAATTTAATTCGGTTCTGGGACTTA 57.884 33.333 0.00 0.00 0.00 2.24
234 238 7.832187 TCATAATTTAATTCGGTTCTGGGACTT 59.168 33.333 0.00 0.00 0.00 3.01
236 240 7.562454 TCATAATTTAATTCGGTTCTGGGAC 57.438 36.000 0.00 0.00 0.00 4.46
237 241 7.230510 CCATCATAATTTAATTCGGTTCTGGGA 59.769 37.037 0.00 0.00 0.00 4.37
238 242 7.230510 TCCATCATAATTTAATTCGGTTCTGGG 59.769 37.037 0.00 0.00 0.00 4.45
239 243 8.165239 TCCATCATAATTTAATTCGGTTCTGG 57.835 34.615 0.00 0.00 0.00 3.86
241 245 9.627123 TTCTCCATCATAATTTAATTCGGTTCT 57.373 29.630 0.00 0.00 0.00 3.01
263 269 2.092699 CAGGGGGAAGGAGTCATTTCTC 60.093 54.545 0.00 0.00 0.00 2.87
265 271 1.683319 GCAGGGGGAAGGAGTCATTTC 60.683 57.143 0.00 0.00 0.00 2.17
266 272 0.332972 GCAGGGGGAAGGAGTCATTT 59.667 55.000 0.00 0.00 0.00 2.32
267 273 0.551131 AGCAGGGGGAAGGAGTCATT 60.551 55.000 0.00 0.00 0.00 2.57
269 275 1.920325 CAGCAGGGGGAAGGAGTCA 60.920 63.158 0.00 0.00 0.00 3.41
270 276 1.904990 GACAGCAGGGGGAAGGAGTC 61.905 65.000 0.00 0.00 0.00 3.36
272 278 2.674220 GGACAGCAGGGGGAAGGAG 61.674 68.421 0.00 0.00 0.00 3.69
273 279 2.610859 GGACAGCAGGGGGAAGGA 60.611 66.667 0.00 0.00 0.00 3.36
274 280 3.732849 GGGACAGCAGGGGGAAGG 61.733 72.222 0.00 0.00 0.00 3.46
295 301 0.867753 GCTCATGTAGGCGTGTCTCG 60.868 60.000 0.00 0.00 43.12 4.04
296 302 0.173481 TGCTCATGTAGGCGTGTCTC 59.827 55.000 0.00 0.00 33.51 3.36
298 304 0.389817 TGTGCTCATGTAGGCGTGTC 60.390 55.000 0.00 0.00 33.51 3.67
300 306 0.108662 TCTGTGCTCATGTAGGCGTG 60.109 55.000 0.00 0.00 0.00 5.34
301 307 0.174389 CTCTGTGCTCATGTAGGCGT 59.826 55.000 0.00 0.00 0.00 5.68
302 308 0.529337 CCTCTGTGCTCATGTAGGCG 60.529 60.000 0.00 0.00 0.00 5.52
303 309 0.813210 GCCTCTGTGCTCATGTAGGC 60.813 60.000 16.40 16.40 42.40 3.93
304 310 0.538584 TGCCTCTGTGCTCATGTAGG 59.461 55.000 0.00 7.31 0.00 3.18
305 311 1.649664 GTGCCTCTGTGCTCATGTAG 58.350 55.000 0.00 0.00 0.00 2.74
306 312 0.250234 GGTGCCTCTGTGCTCATGTA 59.750 55.000 0.00 0.00 0.00 2.29
307 313 1.002868 GGTGCCTCTGTGCTCATGT 60.003 57.895 0.00 0.00 0.00 3.21
308 314 2.104859 CGGTGCCTCTGTGCTCATG 61.105 63.158 0.00 0.00 0.00 3.07
309 315 2.267006 CGGTGCCTCTGTGCTCAT 59.733 61.111 0.00 0.00 0.00 2.90
310 316 4.007644 CCGGTGCCTCTGTGCTCA 62.008 66.667 0.00 0.00 0.00 4.26
311 317 2.646175 TACCGGTGCCTCTGTGCTC 61.646 63.158 19.93 0.00 0.00 4.26
312 318 2.603473 TACCGGTGCCTCTGTGCT 60.603 61.111 19.93 0.00 0.00 4.40
313 319 2.434359 GTACCGGTGCCTCTGTGC 60.434 66.667 19.93 0.00 0.00 4.57
314 320 0.670546 CTTGTACCGGTGCCTCTGTG 60.671 60.000 19.93 0.00 0.00 3.66
315 321 1.671742 CTTGTACCGGTGCCTCTGT 59.328 57.895 19.93 0.00 0.00 3.41
316 322 1.079127 CCTTGTACCGGTGCCTCTG 60.079 63.158 19.93 5.87 0.00 3.35
317 323 1.229082 TCCTTGTACCGGTGCCTCT 60.229 57.895 19.93 0.00 0.00 3.69
318 324 1.218316 CTCCTTGTACCGGTGCCTC 59.782 63.158 19.93 5.66 0.00 4.70
319 325 2.291043 CCTCCTTGTACCGGTGCCT 61.291 63.158 19.93 0.00 0.00 4.75
320 326 2.267961 CCTCCTTGTACCGGTGCC 59.732 66.667 19.93 8.39 0.00 5.01
321 327 2.436115 GCCTCCTTGTACCGGTGC 60.436 66.667 19.93 18.21 0.00 5.01
322 328 0.744414 CATGCCTCCTTGTACCGGTG 60.744 60.000 19.93 0.00 0.00 4.94
323 329 1.602237 CATGCCTCCTTGTACCGGT 59.398 57.895 13.98 13.98 0.00 5.28
324 330 1.819632 GCATGCCTCCTTGTACCGG 60.820 63.158 6.36 0.00 0.00 5.28
325 331 1.078497 TGCATGCCTCCTTGTACCG 60.078 57.895 16.68 0.00 0.00 4.02
326 332 1.379642 GCTGCATGCCTCCTTGTACC 61.380 60.000 16.68 0.00 35.15 3.34
375 381 0.736325 CTGAACCGCTCAAGGGTACG 60.736 60.000 0.00 0.00 36.57 3.67
399 405 1.748493 CTTGGAGAGGAAGAGGACGAG 59.252 57.143 0.00 0.00 0.00 4.18
400 406 1.840737 CTTGGAGAGGAAGAGGACGA 58.159 55.000 0.00 0.00 0.00 4.20
475 487 1.132834 TGCATGAAACGTGATGGCATC 59.867 47.619 20.52 20.52 0.00 3.91
520 532 2.450160 GGTTAGATGCGAAATTTGCCG 58.550 47.619 2.33 0.00 0.00 5.69
579 591 1.338020 GAAATATCCGGCTTGCAAGGG 59.662 52.381 27.10 20.09 0.00 3.95
599 611 4.934075 TTGTCTGCATGATTCTTCTTCG 57.066 40.909 0.00 0.00 0.00 3.79
633 645 5.580297 GCTTCATTGTGGTTCTTTTGTCAAA 59.420 36.000 0.00 0.00 0.00 2.69
652 664 5.392272 CCATCTTCAACGATTTGATGCTTCA 60.392 40.000 0.00 0.00 41.50 3.02
653 665 5.032863 CCATCTTCAACGATTTGATGCTTC 58.967 41.667 0.00 0.00 41.50 3.86
656 668 3.111098 GCCATCTTCAACGATTTGATGC 58.889 45.455 0.00 0.00 41.50 3.91
659 671 2.487762 GTGGCCATCTTCAACGATTTGA 59.512 45.455 9.72 0.00 40.14 2.69
660 672 2.228582 TGTGGCCATCTTCAACGATTTG 59.771 45.455 9.72 0.00 0.00 2.32
661 673 2.513753 TGTGGCCATCTTCAACGATTT 58.486 42.857 9.72 0.00 0.00 2.17
678 697 8.812147 TCTGTGTGTATAGTAAACTTCTTGTG 57.188 34.615 0.00 0.00 0.00 3.33
694 713 4.513692 CCTTGGTCGATTTTTCTGTGTGTA 59.486 41.667 0.00 0.00 0.00 2.90
708 731 1.701031 TTGTTCTGGGCCTTGGTCGA 61.701 55.000 4.53 0.00 0.00 4.20
717 740 1.600916 ACGGCTTCTTGTTCTGGGC 60.601 57.895 0.00 0.00 0.00 5.36
720 743 2.354510 TGAAACACGGCTTCTTGTTCTG 59.645 45.455 0.00 0.00 34.82 3.02
791 817 4.141869 GCCCCTACCGTGTATTTTTCTCTA 60.142 45.833 0.00 0.00 0.00 2.43
801 827 0.262580 ATGTAGGCCCCTACCGTGTA 59.737 55.000 19.06 3.50 46.01 2.90
803 829 1.746517 GATGTAGGCCCCTACCGTG 59.253 63.158 19.06 0.00 46.01 4.94
806 832 1.125633 TTTCGATGTAGGCCCCTACC 58.874 55.000 19.06 6.40 46.01 3.18
807 833 3.139077 CAATTTCGATGTAGGCCCCTAC 58.861 50.000 15.91 15.91 46.56 3.18
902 931 1.685820 GAGAAACAGGGGAGGTGGG 59.314 63.158 0.00 0.00 0.00 4.61
938 967 0.391793 CTTCCTTCCTTCCTCACGCC 60.392 60.000 0.00 0.00 0.00 5.68
942 971 0.987294 CTGCCTTCCTTCCTTCCTCA 59.013 55.000 0.00 0.00 0.00 3.86
945 974 1.746991 CGCTGCCTTCCTTCCTTCC 60.747 63.158 0.00 0.00 0.00 3.46
946 975 0.742635 CTCGCTGCCTTCCTTCCTTC 60.743 60.000 0.00 0.00 0.00 3.46
947 976 1.194781 TCTCGCTGCCTTCCTTCCTT 61.195 55.000 0.00 0.00 0.00 3.36
977 1006 2.493973 CAGCCTCTCGCAGTCTCC 59.506 66.667 0.00 0.00 41.38 3.71
993 1022 3.664025 CTCGTTCTCCATGGCGGCA 62.664 63.158 16.34 16.34 33.14 5.69
1026 1055 1.757699 AGCTCGAAATAGGACTGGGAC 59.242 52.381 0.00 0.00 0.00 4.46
1049 1086 4.372656 CTCTAAATCCTAGGGCAGAAACG 58.627 47.826 9.46 0.00 0.00 3.60
1149 1186 0.958876 CCAAACCCTTGTACCGAGCC 60.959 60.000 0.00 0.00 0.00 4.70
1204 1241 1.740025 CCAGTCCCATCTTCTTTTCGC 59.260 52.381 0.00 0.00 0.00 4.70
1207 1244 4.682021 AATCCCAGTCCCATCTTCTTTT 57.318 40.909 0.00 0.00 0.00 2.27
1210 1247 2.511637 GGAAATCCCAGTCCCATCTTCT 59.488 50.000 0.00 0.00 34.14 2.85
1216 1253 1.985622 ATGAGGAAATCCCAGTCCCA 58.014 50.000 0.00 0.00 37.41 4.37
1310 1362 7.857885 CCGGAAAATAGATTAATTGAAGAGCAC 59.142 37.037 0.00 0.00 0.00 4.40
1327 1380 7.094118 CCAGTTTTGAATCTAACCCGGAAAATA 60.094 37.037 0.73 0.00 0.00 1.40
1337 1390 7.607991 TCTGAATCTCCCAGTTTTGAATCTAAC 59.392 37.037 0.00 0.00 33.57 2.34
1339 1392 7.257790 TCTGAATCTCCCAGTTTTGAATCTA 57.742 36.000 0.00 0.00 33.57 1.98
1345 1398 4.763793 ACACATCTGAATCTCCCAGTTTTG 59.236 41.667 0.00 0.00 33.57 2.44
1346 1399 4.990526 ACACATCTGAATCTCCCAGTTTT 58.009 39.130 0.00 0.00 33.57 2.43
1430 1485 7.428826 GTTTTTCCATCTCAATATGTCCATCC 58.571 38.462 0.00 0.00 0.00 3.51
1485 1540 9.751542 GAAGTATGACTATTTAAAGCAGCTCTA 57.248 33.333 0.00 0.00 0.00 2.43
1487 1542 8.655651 AGAAGTATGACTATTTAAAGCAGCTC 57.344 34.615 0.00 0.00 0.00 4.09
1511 1566 2.971660 TGCCAATTTCATGCCATGAG 57.028 45.000 7.55 0.00 40.94 2.90
1513 1568 3.536570 TCAATGCCAATTTCATGCCATG 58.463 40.909 0.00 0.00 0.00 3.66
1514 1569 3.916359 TCAATGCCAATTTCATGCCAT 57.084 38.095 0.00 0.00 0.00 4.40
1516 1571 3.537580 ACATCAATGCCAATTTCATGCC 58.462 40.909 0.00 0.00 0.00 4.40
1526 1581 6.186957 ACAAGGACTAATAACATCAATGCCA 58.813 36.000 0.00 0.00 0.00 4.92
1527 1582 6.699575 ACAAGGACTAATAACATCAATGCC 57.300 37.500 0.00 0.00 0.00 4.40
1543 1598 6.874134 TGCAGAACTCTCTAATAAACAAGGAC 59.126 38.462 0.00 0.00 0.00 3.85
1577 1632 7.893302 AGAAGGGTGGAAATATTTGTATGTGAA 59.107 33.333 5.17 0.00 0.00 3.18
1753 1811 4.468713 TGACATTTGACAACCTTCATCCA 58.531 39.130 0.00 0.00 0.00 3.41
1762 1820 7.272084 GCAATAGACAGATTGACATTTGACAAC 59.728 37.037 0.40 0.00 38.83 3.32
1785 1843 8.006590 GCAAAATCAACATAATTTACAACGCAA 58.993 29.630 0.00 0.00 0.00 4.85
1800 1858 4.739137 GCCTACTTGGTTGCAAAATCAACA 60.739 41.667 0.00 0.00 45.98 3.33
1820 1878 3.751698 GGAATTTCTCGTAACAACAGCCT 59.248 43.478 0.00 0.00 0.00 4.58
1826 1884 8.519526 AGCATTTAATGGAATTTCTCGTAACAA 58.480 29.630 7.08 0.00 37.87 2.83
1847 1905 3.035173 TAGCCGCAGCCTCAGCATT 62.035 57.895 0.00 0.00 43.56 3.56
1848 1906 3.473647 TAGCCGCAGCCTCAGCAT 61.474 61.111 0.00 0.00 43.56 3.79
1891 1960 7.399191 TGGTACAGGTCTACATTCTTACAGATT 59.601 37.037 0.00 0.00 0.00 2.40
1892 1961 6.895756 TGGTACAGGTCTACATTCTTACAGAT 59.104 38.462 0.00 0.00 0.00 2.90
1951 2020 4.348495 GTGAGGGTGGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1961 2030 4.542627 TTGGGTGGGGGTGAGGGT 62.543 66.667 0.00 0.00 0.00 4.34
1962 2031 2.557181 ATTTGGGTGGGGGTGAGGG 61.557 63.158 0.00 0.00 0.00 4.30
1963 2032 1.305213 CATTTGGGTGGGGGTGAGG 60.305 63.158 0.00 0.00 0.00 3.86
1964 2033 1.305213 CCATTTGGGTGGGGGTGAG 60.305 63.158 0.00 0.00 35.55 3.51
1965 2034 2.857889 CCATTTGGGTGGGGGTGA 59.142 61.111 0.00 0.00 35.55 4.02
1966 2035 3.002583 GCCATTTGGGTGGGGGTG 61.003 66.667 0.00 0.00 39.73 4.61
1967 2036 3.106859 TTGCCATTTGGGTGGGGGT 62.107 57.895 0.00 0.00 39.73 4.95
2024 2105 2.739943 TCAGTACACCTAGCTGCAGAT 58.260 47.619 20.43 15.46 0.00 2.90
2275 2365 4.025015 AGAGCAAATTATTTGAGCAGCG 57.975 40.909 20.37 0.00 43.26 5.18
2694 2801 4.551388 CCTCAAGACAATAGCGTATCTCC 58.449 47.826 0.00 0.00 0.00 3.71
2814 3010 9.138596 AGAAAACAAATAGGTAAAGCAGGTTAA 57.861 29.630 0.00 0.00 0.00 2.01
2815 3011 8.700439 AGAAAACAAATAGGTAAAGCAGGTTA 57.300 30.769 0.00 0.00 0.00 2.85
2844 3042 5.491070 TCACATCAAAGTATCCTGGACAAG 58.509 41.667 0.00 0.00 0.00 3.16
3064 3265 5.625311 CGCAACTTGACAAAAGAATAAGGAC 59.375 40.000 0.00 0.00 0.00 3.85
3068 3269 5.885881 ACACGCAACTTGACAAAAGAATAA 58.114 33.333 0.00 0.00 0.00 1.40
3265 3472 9.730705 TGAATATATGATCAATGAAAGGACTCC 57.269 33.333 0.00 0.00 0.00 3.85
3308 3525 0.035725 GGGTGGAGTACGGAAAAGGG 60.036 60.000 0.00 0.00 0.00 3.95
3481 3699 6.401581 GGAGTAATGAACGCAAAGAAGAGAAG 60.402 42.308 0.00 0.00 0.00 2.85
3638 3859 2.094659 CGCTGCCGAACACTGTAGG 61.095 63.158 0.00 0.42 36.29 3.18
3696 3918 6.715464 CCAATCACACATCTTATTCGGTAAC 58.285 40.000 0.00 0.00 0.00 2.50
3735 3959 2.090400 CAGGATCGATGCTGGTATGG 57.910 55.000 32.48 11.53 41.82 2.74
3779 4004 6.038492 CCATGAAACATTTTCAAGCAGGTTTT 59.962 34.615 5.49 0.00 31.55 2.43
3781 4006 5.058490 CCATGAAACATTTTCAAGCAGGTT 58.942 37.500 5.49 0.00 31.55 3.50
3800 4025 2.611224 GCCAGGCAAAGAAGTTTCCATG 60.611 50.000 6.55 0.00 0.00 3.66
3801 4026 1.620323 GCCAGGCAAAGAAGTTTCCAT 59.380 47.619 6.55 0.00 0.00 3.41
3803 4028 0.039165 CGCCAGGCAAAGAAGTTTCC 60.039 55.000 13.30 0.00 0.00 3.13
3844 4069 4.792704 GCCGTTGTTGACACTGAATCATTT 60.793 41.667 0.00 0.00 0.00 2.32
3851 4076 0.102663 TACGCCGTTGTTGACACTGA 59.897 50.000 0.00 0.00 0.00 3.41
3860 4085 1.069771 CCGTTTTCATTACGCCGTTGT 60.070 47.619 0.00 0.00 37.67 3.32
3867 4092 5.163804 TGGACATGAATCCGTTTTCATTACG 60.164 40.000 0.00 0.00 42.29 3.18
3872 4097 3.694072 GGATGGACATGAATCCGTTTTCA 59.306 43.478 0.00 0.42 42.24 2.69
3879 4104 3.575687 GGGATTTGGATGGACATGAATCC 59.424 47.826 15.53 15.53 42.40 3.01
3889 4114 4.284178 ACATTTCTCAGGGATTTGGATGG 58.716 43.478 0.00 0.00 0.00 3.51
3891 4116 4.161001 GCAACATTTCTCAGGGATTTGGAT 59.839 41.667 0.00 0.00 0.00 3.41
3894 4119 3.504863 CGCAACATTTCTCAGGGATTTG 58.495 45.455 0.00 0.00 0.00 2.32
3916 4141 9.229784 CACAAGTATAGCTTTCAGCAATAATTG 57.770 33.333 8.35 8.35 45.56 2.32
3920 4145 7.824289 AGAACACAAGTATAGCTTTCAGCAATA 59.176 33.333 0.00 0.00 45.56 1.90
3933 4159 7.054124 GGGGATTGATCAAGAACACAAGTATA 58.946 38.462 14.54 0.00 0.00 1.47
3934 4160 5.888161 GGGGATTGATCAAGAACACAAGTAT 59.112 40.000 14.54 0.00 0.00 2.12
3935 4161 5.253330 GGGGATTGATCAAGAACACAAGTA 58.747 41.667 14.54 0.00 0.00 2.24
3936 4162 4.082125 GGGGATTGATCAAGAACACAAGT 58.918 43.478 14.54 0.00 0.00 3.16
3938 4164 3.075882 AGGGGGATTGATCAAGAACACAA 59.924 43.478 14.54 0.00 0.00 3.33
3946 4172 3.144068 TCTGGTAGGGGGATTGATCAA 57.856 47.619 11.26 11.26 0.00 2.57
3959 4185 5.844004 AGGTATTAACGCAAGATCTGGTAG 58.156 41.667 0.00 0.00 43.62 3.18
3964 4190 5.817816 CAGGAAAGGTATTAACGCAAGATCT 59.182 40.000 0.00 0.00 43.62 2.75
3970 4196 3.343941 AGCAGGAAAGGTATTAACGCA 57.656 42.857 0.00 0.00 0.00 5.24
3981 4207 1.201647 CAGCCATGTGAAGCAGGAAAG 59.798 52.381 0.00 0.00 0.00 2.62
3986 4212 0.322277 AGGTCAGCCATGTGAAGCAG 60.322 55.000 0.00 0.00 37.19 4.24
3989 4215 1.808945 GACAAGGTCAGCCATGTGAAG 59.191 52.381 0.00 0.00 45.57 3.02
3990 4216 1.545428 GGACAAGGTCAGCCATGTGAA 60.545 52.381 0.00 0.00 45.57 3.18
3995 4221 2.185310 GACGGGACAAGGTCAGCCAT 62.185 60.000 0.00 0.00 37.19 4.40
3998 4224 1.870055 TACGACGGGACAAGGTCAGC 61.870 60.000 0.00 0.00 33.68 4.26
4025 4259 5.473504 ACAATTTGCCAAGATTTAGTCGTCT 59.526 36.000 0.00 0.00 0.00 4.18
4029 4263 7.538678 CACAGTACAATTTGCCAAGATTTAGTC 59.461 37.037 0.00 0.00 0.00 2.59
4043 4277 5.789643 ACTTGGCAATCACAGTACAATTT 57.210 34.783 0.00 0.00 0.00 1.82
4058 4292 0.179124 GCGGACAAACAAACTTGGCA 60.179 50.000 0.00 0.00 35.90 4.92
4059 4293 0.179124 TGCGGACAAACAAACTTGGC 60.179 50.000 0.00 0.00 33.17 4.52
4060 4294 2.285827 TTGCGGACAAACAAACTTGG 57.714 45.000 0.00 0.00 31.21 3.61
4061 4295 4.026640 CAGAATTGCGGACAAACAAACTTG 60.027 41.667 0.00 0.00 39.77 3.16
4067 4301 2.293170 TCACAGAATTGCGGACAAACA 58.707 42.857 0.00 0.00 39.77 2.83
4076 4310 3.741344 AGTACGAGTGTTCACAGAATTGC 59.259 43.478 5.74 0.00 0.00 3.56
4079 4313 4.585955 ACAGTACGAGTGTTCACAGAAT 57.414 40.909 5.74 0.00 0.00 2.40
4080 4314 4.380841 AACAGTACGAGTGTTCACAGAA 57.619 40.909 5.74 0.00 37.15 3.02
4084 4318 4.440103 CACAGTAACAGTACGAGTGTTCAC 59.560 45.833 10.15 0.00 40.62 3.18
4086 4320 3.979495 CCACAGTAACAGTACGAGTGTTC 59.021 47.826 10.15 4.99 40.62 3.18
4094 4328 3.983344 CCGTACAACCACAGTAACAGTAC 59.017 47.826 0.00 0.00 0.00 2.73
4097 4331 3.005050 TCTCCGTACAACCACAGTAACAG 59.995 47.826 0.00 0.00 0.00 3.16
4100 4334 3.006110 CCTTCTCCGTACAACCACAGTAA 59.994 47.826 0.00 0.00 0.00 2.24
4102 4336 1.343465 CCTTCTCCGTACAACCACAGT 59.657 52.381 0.00 0.00 0.00 3.55
4103 4337 1.337823 CCCTTCTCCGTACAACCACAG 60.338 57.143 0.00 0.00 0.00 3.66
4104 4338 0.682852 CCCTTCTCCGTACAACCACA 59.317 55.000 0.00 0.00 0.00 4.17
4106 4340 1.621814 CTTCCCTTCTCCGTACAACCA 59.378 52.381 0.00 0.00 0.00 3.67
4107 4341 1.675116 GCTTCCCTTCTCCGTACAACC 60.675 57.143 0.00 0.00 0.00 3.77
4108 4342 1.275573 AGCTTCCCTTCTCCGTACAAC 59.724 52.381 0.00 0.00 0.00 3.32
4109 4343 1.275291 CAGCTTCCCTTCTCCGTACAA 59.725 52.381 0.00 0.00 0.00 2.41
4149 4383 8.244113 TGTTCAGTCATACTCATAGTACAACTG 58.756 37.037 16.90 16.90 42.26 3.16
4164 4398 4.285775 TGGACAGGAACATGTTCAGTCATA 59.714 41.667 37.06 29.39 42.60 2.15
4165 4399 3.072915 TGGACAGGAACATGTTCAGTCAT 59.927 43.478 37.06 22.89 42.60 3.06
4180 4414 1.757118 TCGGCTCTAGAAATGGACAGG 59.243 52.381 0.00 0.00 0.00 4.00
4341 4575 4.632153 AGCCGACGAATTGATAGCTAAAT 58.368 39.130 0.00 0.00 0.00 1.40
4359 4593 1.202143 GGCGAGAAAATTTGGTAGCCG 60.202 52.381 10.76 3.02 33.66 5.52
4376 4610 2.282820 GCGACTTTTCTAGAGATTGGCG 59.717 50.000 7.41 7.41 0.00 5.69
4430 4664 3.435105 TGATTTCATGCCGGTATTTGC 57.565 42.857 0.66 0.00 0.00 3.68
4437 4671 1.334869 GGCTACTTGATTTCATGCCGG 59.665 52.381 0.00 0.00 0.00 6.13
4438 4672 2.289002 GAGGCTACTTGATTTCATGCCG 59.711 50.000 0.00 0.00 43.15 5.69
4444 4678 4.504826 GCTCTTACGAGGCTACTTGATTTC 59.495 45.833 0.00 0.00 37.75 2.17
4450 4684 2.362717 GGATGCTCTTACGAGGCTACTT 59.637 50.000 0.00 0.00 37.75 2.24
4466 4700 2.425143 TTGACATCTCTTGGGGATGC 57.575 50.000 7.25 2.18 42.88 3.91
4467 4701 4.523943 TGTTTTTGACATCTCTTGGGGATG 59.476 41.667 5.92 5.92 44.17 3.51
4468 4702 4.739793 TGTTTTTGACATCTCTTGGGGAT 58.260 39.130 0.00 0.00 32.00 3.85
4469 4703 4.144297 CTGTTTTTGACATCTCTTGGGGA 58.856 43.478 0.00 0.00 37.69 4.81
4470 4704 3.305608 GCTGTTTTTGACATCTCTTGGGG 60.306 47.826 0.00 0.00 37.69 4.96
4471 4705 3.305608 GGCTGTTTTTGACATCTCTTGGG 60.306 47.826 0.00 0.00 37.69 4.12
4472 4706 3.610114 CGGCTGTTTTTGACATCTCTTGG 60.610 47.826 0.00 0.00 37.69 3.61
4473 4707 3.003689 ACGGCTGTTTTTGACATCTCTTG 59.996 43.478 0.00 0.00 37.69 3.02
4474 4708 3.003689 CACGGCTGTTTTTGACATCTCTT 59.996 43.478 0.00 0.00 37.69 2.85
4475 4709 2.549754 CACGGCTGTTTTTGACATCTCT 59.450 45.455 0.00 0.00 37.69 3.10
4476 4710 2.350772 CCACGGCTGTTTTTGACATCTC 60.351 50.000 0.00 0.00 37.69 2.75
4477 4711 1.608590 CCACGGCTGTTTTTGACATCT 59.391 47.619 0.00 0.00 37.69 2.90
4478 4712 1.336755 ACCACGGCTGTTTTTGACATC 59.663 47.619 0.00 0.00 37.69 3.06
4479 4713 1.066908 CACCACGGCTGTTTTTGACAT 59.933 47.619 0.00 0.00 37.69 3.06
4480 4714 0.453793 CACCACGGCTGTTTTTGACA 59.546 50.000 0.00 0.00 36.65 3.58
4481 4715 0.869880 GCACCACGGCTGTTTTTGAC 60.870 55.000 0.00 0.00 0.00 3.18
4482 4716 1.435515 GCACCACGGCTGTTTTTGA 59.564 52.632 0.00 0.00 0.00 2.69
4483 4717 1.591327 GGCACCACGGCTGTTTTTG 60.591 57.895 0.00 0.00 37.17 2.44
4484 4718 2.811799 GGCACCACGGCTGTTTTT 59.188 55.556 0.00 0.00 37.17 1.94
4512 4746 6.864360 TTTTTCTTCTTTCATGCCCAAATG 57.136 33.333 0.00 0.00 0.00 2.32
4549 4889 2.612972 CCACATCACCGTATAGGCATCC 60.613 54.545 0.00 0.00 46.52 3.51
4560 4900 4.755123 ACTTCTTCTTAAACCACATCACCG 59.245 41.667 0.00 0.00 0.00 4.94
4564 4904 9.660180 ATCTCTAACTTCTTCTTAAACCACATC 57.340 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.