Multiple sequence alignment - TraesCS4A01G025100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G025100 | chr4A | 100.000 | 4373 | 0 | 0 | 1 | 4373 | 17262765 | 17258393 | 0.000000e+00 | 8076.0 |
1 | TraesCS4A01G025100 | chr4A | 94.545 | 55 | 1 | 2 | 4217 | 4269 | 121501272 | 121501326 | 2.800000e-12 | 84.2 |
2 | TraesCS4A01G025100 | chr4D | 95.862 | 2803 | 84 | 6 | 922 | 3715 | 449731672 | 449734451 | 0.000000e+00 | 4505.0 |
3 | TraesCS4A01G025100 | chr4D | 91.139 | 474 | 28 | 9 | 3741 | 4206 | 449734448 | 449734915 | 7.980000e-177 | 630.0 |
4 | TraesCS4A01G025100 | chr4D | 85.175 | 371 | 16 | 16 | 11 | 368 | 449730649 | 449730993 | 1.160000e-90 | 344.0 |
5 | TraesCS4A01G025100 | chr4D | 76.638 | 458 | 64 | 24 | 473 | 904 | 449731170 | 449731610 | 3.430000e-51 | 213.0 |
6 | TraesCS4A01G025100 | chr4D | 93.750 | 112 | 5 | 2 | 4264 | 4373 | 449734914 | 449735025 | 2.710000e-37 | 167.0 |
7 | TraesCS4A01G025100 | chr4B | 95.860 | 2802 | 86 | 6 | 900 | 3693 | 562355779 | 562358558 | 0.000000e+00 | 4505.0 |
8 | TraesCS4A01G025100 | chr4B | 87.431 | 541 | 31 | 16 | 3689 | 4206 | 562358618 | 562359144 | 4.870000e-164 | 588.0 |
9 | TraesCS4A01G025100 | chr4B | 76.251 | 939 | 104 | 61 | 42 | 904 | 562354717 | 562355612 | 5.300000e-104 | 388.0 |
10 | TraesCS4A01G025100 | chr4B | 95.495 | 111 | 4 | 1 | 4264 | 4373 | 562359143 | 562359253 | 4.490000e-40 | 176.0 |
11 | TraesCS4A01G025100 | chr3A | 95.522 | 67 | 3 | 0 | 3999 | 4065 | 30397390 | 30397456 | 1.660000e-19 | 108.0 |
12 | TraesCS4A01G025100 | chr7B | 94.737 | 57 | 1 | 2 | 4220 | 4275 | 304527225 | 304527170 | 2.170000e-13 | 87.9 |
13 | TraesCS4A01G025100 | chr7B | 92.727 | 55 | 4 | 0 | 4220 | 4274 | 670232207 | 670232261 | 3.630000e-11 | 80.5 |
14 | TraesCS4A01G025100 | chr2D | 100.000 | 47 | 0 | 0 | 4222 | 4268 | 596007853 | 596007807 | 2.170000e-13 | 87.9 |
15 | TraesCS4A01G025100 | chr2D | 94.444 | 54 | 1 | 2 | 4221 | 4274 | 35588359 | 35588308 | 1.010000e-11 | 82.4 |
16 | TraesCS4A01G025100 | chr1B | 96.078 | 51 | 2 | 0 | 4220 | 4270 | 451733225 | 451733175 | 2.800000e-12 | 84.2 |
17 | TraesCS4A01G025100 | chr6A | 92.727 | 55 | 4 | 0 | 4220 | 4274 | 447635245 | 447635299 | 3.630000e-11 | 80.5 |
18 | TraesCS4A01G025100 | chr5B | 88.889 | 63 | 6 | 1 | 4220 | 4281 | 316712651 | 316712589 | 4.690000e-10 | 76.8 |
19 | TraesCS4A01G025100 | chr5A | 90.164 | 61 | 3 | 3 | 4220 | 4277 | 476099431 | 476099371 | 4.690000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G025100 | chr4A | 17258393 | 17262765 | 4372 | True | 8076.00 | 8076 | 100.00000 | 1 | 4373 | 1 | chr4A.!!$R1 | 4372 |
1 | TraesCS4A01G025100 | chr4D | 449730649 | 449735025 | 4376 | False | 1171.80 | 4505 | 88.51280 | 11 | 4373 | 5 | chr4D.!!$F1 | 4362 |
2 | TraesCS4A01G025100 | chr4B | 562354717 | 562359253 | 4536 | False | 1414.25 | 4505 | 88.75925 | 42 | 4373 | 4 | chr4B.!!$F1 | 4331 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
721 | 856 | 0.109412 | GATCGGACTGGTTTCGTCGT | 60.109 | 55.000 | 0.00 | 0.00 | 32.24 | 4.34 | F |
734 | 869 | 0.167470 | TCGTCGTTCTGGTGATCGTC | 59.833 | 55.000 | 0.00 | 0.00 | 36.91 | 4.20 | F |
901 | 1210 | 1.134175 | CCCCGCGTCAATTTGCTTTAT | 59.866 | 47.619 | 4.92 | 0.00 | 0.00 | 1.40 | F |
2812 | 3122 | 1.007734 | GTGCTCTTGGACGACGTCA | 60.008 | 57.895 | 27.77 | 12.43 | 33.68 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2686 | 2996 | 0.171455 | AAAGTAGCGCGAGACCTCTG | 59.829 | 55.000 | 12.10 | 0.0 | 0.00 | 3.35 | R |
2697 | 3007 | 1.263776 | CTCGAGCAGTCAAAGTAGCG | 58.736 | 55.000 | 0.00 | 0.0 | 0.00 | 4.26 | R |
2895 | 3205 | 2.987232 | AGTGGTAAAATCTCCGAAGCC | 58.013 | 47.619 | 0.00 | 0.0 | 0.00 | 4.35 | R |
3796 | 4193 | 1.658095 | GCTTGTCTCTGCAAGTCGATC | 59.342 | 52.381 | 7.51 | 0.0 | 45.47 | 3.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 0.741915 | CGGAGGGAGTAGAAGCTGAC | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
23 | 24 | 1.142097 | GGGAGTAGAAGCTGACGGC | 59.858 | 63.158 | 0.00 | 0.00 | 42.19 | 5.68 |
62 | 63 | 1.002624 | GACCCTGATCGCACCCAAA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
64 | 65 | 1.750399 | CCCTGATCGCACCCAAAGG | 60.750 | 63.158 | 0.00 | 0.00 | 40.04 | 3.11 |
71 | 72 | 2.421314 | GCACCCAAAGGCACCAAC | 59.579 | 61.111 | 0.00 | 0.00 | 36.11 | 3.77 |
77 | 78 | 1.300080 | CAAAGGCACCAACCGCTTG | 60.300 | 57.895 | 0.00 | 0.00 | 33.69 | 4.01 |
83 | 84 | 1.912371 | GCACCAACCGCTTGAGTAGC | 61.912 | 60.000 | 0.00 | 0.00 | 46.83 | 3.58 |
96 | 97 | 2.031163 | GTAGCTAGCCGGCATGGG | 59.969 | 66.667 | 31.54 | 15.94 | 38.63 | 4.00 |
102 | 103 | 2.650813 | CTAGCCGGCATGGGAGTCAC | 62.651 | 65.000 | 31.54 | 0.00 | 38.63 | 3.67 |
142 | 144 | 1.305802 | ACATCGTACTCCCCAGCCA | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
143 | 145 | 1.330655 | ACATCGTACTCCCCAGCCAG | 61.331 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
144 | 146 | 2.435693 | ATCGTACTCCCCAGCCAGC | 61.436 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
145 | 147 | 4.162690 | CGTACTCCCCAGCCAGCC | 62.163 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
146 | 148 | 3.009115 | GTACTCCCCAGCCAGCCA | 61.009 | 66.667 | 0.00 | 0.00 | 0.00 | 4.75 |
147 | 149 | 2.688666 | TACTCCCCAGCCAGCCAG | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
175 | 177 | 3.055963 | CAGCATGGTTCTCACTTCTCTCT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
176 | 178 | 3.582208 | AGCATGGTTCTCACTTCTCTCTT | 59.418 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
177 | 179 | 3.932089 | GCATGGTTCTCACTTCTCTCTTC | 59.068 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
178 | 180 | 4.322650 | GCATGGTTCTCACTTCTCTCTTCT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
179 | 181 | 4.862902 | TGGTTCTCACTTCTCTCTTCTG | 57.137 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
180 | 182 | 4.219115 | TGGTTCTCACTTCTCTCTTCTGT | 58.781 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
181 | 183 | 4.279671 | TGGTTCTCACTTCTCTCTTCTGTC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
190 | 192 | 4.592485 | TCTCTCTTCTGTCCTTCAACAC | 57.408 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
212 | 214 | 1.302993 | ATCCAACCCAACCGAACCG | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
381 | 414 | 4.933064 | GCCGATCTCCTCCGCACG | 62.933 | 72.222 | 0.00 | 0.00 | 0.00 | 5.34 |
382 | 415 | 4.271816 | CCGATCTCCTCCGCACGG | 62.272 | 72.222 | 1.73 | 1.73 | 34.77 | 4.94 |
425 | 479 | 1.205893 | CCGACTCCTTCCCTTCTCTTG | 59.794 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
434 | 488 | 1.470098 | TCCCTTCTCTTGTACGTACGC | 59.530 | 52.381 | 20.18 | 0.00 | 0.00 | 4.42 |
435 | 489 | 1.200716 | CCCTTCTCTTGTACGTACGCA | 59.799 | 52.381 | 20.18 | 9.01 | 0.00 | 5.24 |
436 | 490 | 2.248487 | CCTTCTCTTGTACGTACGCAC | 58.752 | 52.381 | 20.18 | 14.06 | 0.00 | 5.34 |
462 | 516 | 2.264794 | GCCGTGGACCAACTCGAT | 59.735 | 61.111 | 0.00 | 0.00 | 0.00 | 3.59 |
465 | 519 | 1.472728 | GCCGTGGACCAACTCGATAAT | 60.473 | 52.381 | 0.00 | 0.00 | 0.00 | 1.28 |
466 | 520 | 2.201732 | CCGTGGACCAACTCGATAATG | 58.798 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
467 | 521 | 1.593006 | CGTGGACCAACTCGATAATGC | 59.407 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
468 | 522 | 2.627945 | GTGGACCAACTCGATAATGCA | 58.372 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
470 | 524 | 1.593006 | GGACCAACTCGATAATGCACG | 59.407 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
480 | 593 | 1.056700 | ATAATGCACGCCCCTCTCCT | 61.057 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
484 | 597 | 2.046892 | CACGCCCCTCTCCTTGTG | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
485 | 598 | 2.203788 | ACGCCCCTCTCCTTGTGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
491 | 605 | 1.144936 | CCTCTCCTTGTGATCCCGC | 59.855 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
493 | 607 | 1.612146 | TCTCCTTGTGATCCCGCCA | 60.612 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
494 | 608 | 0.982852 | TCTCCTTGTGATCCCGCCAT | 60.983 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
497 | 611 | 1.153369 | CTTGTGATCCCGCCATCGT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 3.73 |
511 | 625 | 3.082579 | ATCGTCTTCTCCGCCTGCC | 62.083 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
514 | 628 | 2.604686 | TCTTCTCCGCCTGCCACT | 60.605 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
516 | 630 | 2.922503 | TTCTCCGCCTGCCACTGA | 60.923 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
565 | 683 | 1.886542 | GGAAGGGCCCGCTATTATTTG | 59.113 | 52.381 | 18.44 | 0.00 | 0.00 | 2.32 |
566 | 684 | 2.488347 | GGAAGGGCCCGCTATTATTTGA | 60.488 | 50.000 | 18.44 | 0.00 | 0.00 | 2.69 |
586 | 704 | 1.758906 | CGGGGAAGGGAGGAGAGAC | 60.759 | 68.421 | 0.00 | 0.00 | 0.00 | 3.36 |
588 | 706 | 1.000612 | GGGAAGGGAGGAGAGACGT | 59.999 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
601 | 719 | 1.819903 | AGAGACGTTAGACAAGGGAGC | 59.180 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
619 | 741 | 2.663188 | GGCCACCTGCGATCGATC | 60.663 | 66.667 | 21.57 | 15.68 | 42.61 | 3.69 |
620 | 742 | 2.663188 | GCCACCTGCGATCGATCC | 60.663 | 66.667 | 21.57 | 12.54 | 0.00 | 3.36 |
629 | 759 | 3.369147 | CCTGCGATCGATCCATGTAAATC | 59.631 | 47.826 | 21.57 | 0.00 | 0.00 | 2.17 |
636 | 766 | 2.806745 | CGATCCATGTAAATCCACCGCT | 60.807 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
646 | 776 | 0.322546 | ATCCACCGCTGGTTTCCTTC | 60.323 | 55.000 | 0.00 | 0.00 | 38.90 | 3.46 |
650 | 780 | 1.741770 | CCGCTGGTTTCCTTCTCCG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
656 | 786 | 1.982226 | TGGTTTCCTTCTCCGATGGAA | 59.018 | 47.619 | 7.02 | 7.02 | 41.83 | 3.53 |
662 | 792 | 4.417426 | TCCTTCTCCGATGGAAATTACC | 57.583 | 45.455 | 0.00 | 0.00 | 33.79 | 2.85 |
663 | 793 | 3.778075 | TCCTTCTCCGATGGAAATTACCA | 59.222 | 43.478 | 0.00 | 0.00 | 44.41 | 3.25 |
680 | 815 | 0.179103 | CCATTTGCGATTTCCCTGCC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
684 | 819 | 3.439540 | GCGATTTCCCTGCCGCAA | 61.440 | 61.111 | 0.00 | 0.00 | 46.04 | 4.85 |
695 | 830 | 1.538276 | CTGCCGCAACGATTTGAATC | 58.462 | 50.000 | 0.00 | 0.00 | 34.24 | 2.52 |
699 | 834 | 0.808125 | CGCAACGATTTGAATCCCCA | 59.192 | 50.000 | 0.00 | 0.00 | 34.24 | 4.96 |
701 | 836 | 2.352225 | CGCAACGATTTGAATCCCCAAA | 60.352 | 45.455 | 0.00 | 0.00 | 39.93 | 3.28 |
705 | 840 | 5.343249 | CAACGATTTGAATCCCCAAAGATC | 58.657 | 41.667 | 0.00 | 0.00 | 39.13 | 2.75 |
706 | 841 | 3.627577 | ACGATTTGAATCCCCAAAGATCG | 59.372 | 43.478 | 0.00 | 0.00 | 40.98 | 3.69 |
708 | 843 | 3.730215 | TTTGAATCCCCAAAGATCGGA | 57.270 | 42.857 | 0.00 | 0.00 | 32.77 | 4.55 |
709 | 844 | 2.710096 | TGAATCCCCAAAGATCGGAC | 57.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
714 | 849 | 0.328258 | CCCCAAAGATCGGACTGGTT | 59.672 | 55.000 | 5.18 | 0.00 | 0.00 | 3.67 |
716 | 851 | 2.084546 | CCCAAAGATCGGACTGGTTTC | 58.915 | 52.381 | 5.18 | 0.00 | 0.00 | 2.78 |
717 | 852 | 1.732259 | CCAAAGATCGGACTGGTTTCG | 59.268 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
718 | 853 | 2.413837 | CAAAGATCGGACTGGTTTCGT | 58.586 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
719 | 854 | 2.365408 | AAGATCGGACTGGTTTCGTC | 57.635 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
720 | 855 | 0.170561 | AGATCGGACTGGTTTCGTCG | 59.829 | 55.000 | 0.00 | 0.00 | 32.24 | 5.12 |
721 | 856 | 0.109412 | GATCGGACTGGTTTCGTCGT | 60.109 | 55.000 | 0.00 | 0.00 | 32.24 | 4.34 |
724 | 859 | 0.318445 | CGGACTGGTTTCGTCGTTCT | 60.318 | 55.000 | 0.00 | 0.00 | 32.24 | 3.01 |
734 | 869 | 0.167470 | TCGTCGTTCTGGTGATCGTC | 59.833 | 55.000 | 0.00 | 0.00 | 36.91 | 4.20 |
739 | 874 | 1.828832 | GTTCTGGTGATCGTCTAGCG | 58.171 | 55.000 | 0.83 | 0.83 | 43.01 | 4.26 |
763 | 898 | 5.673337 | TTTGGTCGAGTGATTCTTTCTTG | 57.327 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
769 | 904 | 4.755123 | TCGAGTGATTCTTTCTTGGTTTCC | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
771 | 906 | 5.932303 | CGAGTGATTCTTTCTTGGTTTCCTA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
776 | 911 | 4.903045 | TCTTTCTTGGTTTCCTATCGGT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
778 | 913 | 5.001232 | TCTTTCTTGGTTTCCTATCGGTTG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
780 | 915 | 3.934068 | TCTTGGTTTCCTATCGGTTGTC | 58.066 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
783 | 918 | 4.360951 | TGGTTTCCTATCGGTTGTCTTT | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
784 | 919 | 4.721132 | TGGTTTCCTATCGGTTGTCTTTT | 58.279 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
785 | 920 | 4.517453 | TGGTTTCCTATCGGTTGTCTTTTG | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
786 | 921 | 4.082949 | GGTTTCCTATCGGTTGTCTTTTGG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.28 |
787 | 922 | 3.343941 | TCCTATCGGTTGTCTTTTGGG | 57.656 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
788 | 923 | 2.640826 | TCCTATCGGTTGTCTTTTGGGT | 59.359 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
789 | 924 | 3.839490 | TCCTATCGGTTGTCTTTTGGGTA | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
790 | 925 | 4.472108 | TCCTATCGGTTGTCTTTTGGGTAT | 59.528 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
791 | 926 | 4.574828 | CCTATCGGTTGTCTTTTGGGTATG | 59.425 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
792 | 927 | 2.156098 | TCGGTTGTCTTTTGGGTATGC | 58.844 | 47.619 | 0.00 | 0.00 | 0.00 | 3.14 |
793 | 928 | 1.883275 | CGGTTGTCTTTTGGGTATGCA | 59.117 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
794 | 929 | 2.294791 | CGGTTGTCTTTTGGGTATGCAA | 59.705 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
795 | 930 | 3.243569 | CGGTTGTCTTTTGGGTATGCAAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
796 | 931 | 4.560513 | CGGTTGTCTTTTGGGTATGCAAAT | 60.561 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
802 | 937 | 8.076910 | TGTCTTTTGGGTATGCAAATAATCAT | 57.923 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
846 | 981 | 8.442605 | TTTTATTTTCGCTACTGCATTTGTAC | 57.557 | 30.769 | 0.00 | 0.00 | 39.64 | 2.90 |
851 | 986 | 1.401905 | GCTACTGCATTTGTACCAGGC | 59.598 | 52.381 | 0.00 | 0.00 | 39.41 | 4.85 |
856 | 991 | 1.617850 | TGCATTTGTACCAGGCAAAGG | 59.382 | 47.619 | 0.00 | 1.07 | 38.91 | 3.11 |
857 | 992 | 1.892474 | GCATTTGTACCAGGCAAAGGA | 59.108 | 47.619 | 8.02 | 0.00 | 39.17 | 3.36 |
859 | 994 | 3.429410 | GCATTTGTACCAGGCAAAGGATC | 60.429 | 47.826 | 8.02 | 0.00 | 39.17 | 3.36 |
871 | 1009 | 7.147846 | ACCAGGCAAAGGATCATTACAAATAAG | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
882 | 1020 | 7.246674 | TCATTACAAATAAGCTCGTGAATCC | 57.753 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
901 | 1210 | 1.134175 | CCCCGCGTCAATTTGCTTTAT | 59.866 | 47.619 | 4.92 | 0.00 | 0.00 | 1.40 |
918 | 1227 | 9.762933 | TTTGCTTTATTTCTTTGTTGCTTCTAT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 1.98 |
919 | 1228 | 9.762933 | TTGCTTTATTTCTTTGTTGCTTCTATT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 1.73 |
920 | 1229 | 9.762933 | TGCTTTATTTCTTTGTTGCTTCTATTT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
970 | 1280 | 2.187707 | CCATAACTGCGCTGAAATTGC | 58.812 | 47.619 | 21.92 | 0.00 | 0.00 | 3.56 |
990 | 1300 | 4.136796 | TGCACATCTGCTCTTTTTACAGT | 58.863 | 39.130 | 0.00 | 0.00 | 44.57 | 3.55 |
991 | 1301 | 4.580167 | TGCACATCTGCTCTTTTTACAGTT | 59.420 | 37.500 | 0.00 | 0.00 | 44.57 | 3.16 |
992 | 1302 | 5.762711 | TGCACATCTGCTCTTTTTACAGTTA | 59.237 | 36.000 | 0.00 | 0.00 | 44.57 | 2.24 |
1134 | 1444 | 1.531739 | GGTTTGATTCCGGCAAGCCA | 61.532 | 55.000 | 17.35 | 4.96 | 43.51 | 4.75 |
1260 | 1570 | 3.179265 | CGCGGTGTGATGGTCGAC | 61.179 | 66.667 | 7.13 | 7.13 | 0.00 | 4.20 |
1404 | 1714 | 4.573900 | AGGCCATGACGATATTGAAGATC | 58.426 | 43.478 | 5.01 | 0.00 | 0.00 | 2.75 |
1530 | 1840 | 5.125100 | TGCAAAACATTCCTGTGAAGATC | 57.875 | 39.130 | 0.00 | 0.00 | 35.22 | 2.75 |
1560 | 1870 | 1.134788 | GTGGTTGGGAGACAGATACCG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
1561 | 1871 | 1.192428 | GGTTGGGAGACAGATACCGT | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
1947 | 2257 | 1.737008 | GCAACCGTTCCTCGAGTCC | 60.737 | 63.158 | 12.31 | 0.00 | 42.86 | 3.85 |
1959 | 2269 | 1.144936 | CGAGTCCCATCAGCCCTTC | 59.855 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
2083 | 2393 | 3.553511 | CGTTGCCAAGATGACATCTCTAC | 59.446 | 47.826 | 18.21 | 11.52 | 39.08 | 2.59 |
2247 | 2557 | 1.692411 | ACCACCAACTGCTTCTTTCC | 58.308 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2289 | 2599 | 6.629128 | AGATGATATCCTTGCTAATGACTCG | 58.371 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2292 | 2602 | 6.678878 | TGATATCCTTGCTAATGACTCGTAC | 58.321 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2544 | 2854 | 3.932710 | TGATTGAGGTATTGAACGACTGC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2812 | 3122 | 1.007734 | GTGCTCTTGGACGACGTCA | 60.008 | 57.895 | 27.77 | 12.43 | 33.68 | 4.35 |
3111 | 3421 | 2.222027 | GCAGATATGGGGAAGGAAACG | 58.778 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
3120 | 3430 | 1.145803 | GGAAGGAAACGACGTTCAGG | 58.854 | 55.000 | 14.58 | 0.00 | 36.70 | 3.86 |
3213 | 3523 | 2.102084 | GGTGATACGGGGGAAGAACTAC | 59.898 | 54.545 | 0.00 | 0.00 | 0.00 | 2.73 |
3521 | 3839 | 9.557338 | CTGTTTATCAGTTACAGTACAGTAGTC | 57.443 | 37.037 | 0.00 | 0.00 | 39.17 | 2.59 |
3556 | 3874 | 8.437360 | AATTTTCAATTTTCTCTGGTCCAAAC | 57.563 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
3647 | 3965 | 9.267084 | GAGTTTTGAGATTCTCTGTCTTTTAGT | 57.733 | 33.333 | 14.54 | 0.00 | 0.00 | 2.24 |
3776 | 4173 | 0.034337 | GGTAGTGGTTCAACCTGCGA | 59.966 | 55.000 | 8.40 | 0.00 | 39.58 | 5.10 |
3779 | 4176 | 0.249911 | AGTGGTTCAACCTGCGACTC | 60.250 | 55.000 | 8.40 | 0.00 | 39.58 | 3.36 |
3915 | 4315 | 1.120530 | GCCCCGTCTTTCTGGAGATA | 58.879 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3946 | 4346 | 4.464112 | GAACATGTACGGCTTTTTCAGTC | 58.536 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
3960 | 4360 | 5.651172 | TTTTCAGTCTGAATACGTGTGTG | 57.349 | 39.130 | 15.95 | 0.00 | 36.11 | 3.82 |
4030 | 4436 | 6.429385 | AGCTGTCAACCTAAAAGATTTGAGAG | 59.571 | 38.462 | 3.62 | 3.62 | 40.55 | 3.20 |
4086 | 4492 | 4.677378 | GCGTAATATACAGCTCTGTCTGTG | 59.323 | 45.833 | 5.72 | 0.00 | 45.95 | 3.66 |
4096 | 4502 | 1.446792 | CTGTCTGTGTAGGCTGGCG | 60.447 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
4118 | 4524 | 1.610522 | GCAGCACCAAGTCAATTCTGT | 59.389 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
4122 | 4528 | 3.503748 | AGCACCAAGTCAATTCTGTAAGC | 59.496 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
4136 | 4542 | 4.385825 | TCTGTAAGCACGATTCCTTTTGT | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4137 | 4543 | 4.451096 | TCTGTAAGCACGATTCCTTTTGTC | 59.549 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
4149 | 4555 | 3.084039 | TCCTTTTGTCCAATGCTAGCTG | 58.916 | 45.455 | 17.23 | 6.64 | 0.00 | 4.24 |
4150 | 4556 | 3.084039 | CCTTTTGTCCAATGCTAGCTGA | 58.916 | 45.455 | 17.23 | 4.57 | 0.00 | 4.26 |
4151 | 4557 | 3.128242 | CCTTTTGTCCAATGCTAGCTGAG | 59.872 | 47.826 | 17.23 | 5.12 | 0.00 | 3.35 |
4152 | 4558 | 3.423539 | TTTGTCCAATGCTAGCTGAGT | 57.576 | 42.857 | 17.23 | 0.00 | 0.00 | 3.41 |
4153 | 4559 | 4.551702 | TTTGTCCAATGCTAGCTGAGTA | 57.448 | 40.909 | 17.23 | 0.00 | 0.00 | 2.59 |
4154 | 4560 | 3.526931 | TGTCCAATGCTAGCTGAGTAC | 57.473 | 47.619 | 17.23 | 9.40 | 0.00 | 2.73 |
4155 | 4561 | 3.099905 | TGTCCAATGCTAGCTGAGTACT | 58.900 | 45.455 | 17.23 | 0.00 | 0.00 | 2.73 |
4156 | 4562 | 4.278310 | TGTCCAATGCTAGCTGAGTACTA | 58.722 | 43.478 | 17.23 | 0.00 | 0.00 | 1.82 |
4157 | 4563 | 4.339530 | TGTCCAATGCTAGCTGAGTACTAG | 59.660 | 45.833 | 17.23 | 0.00 | 40.13 | 2.57 |
4177 | 4583 | 5.948162 | ACTAGTACTGTAGATCGGAAACCAA | 59.052 | 40.000 | 5.39 | 0.00 | 0.00 | 3.67 |
4180 | 4586 | 6.164176 | AGTACTGTAGATCGGAAACCAAAAG | 58.836 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4194 | 4600 | 7.255346 | CGGAAACCAAAAGTTACTTGGAGTAAT | 60.255 | 37.037 | 12.37 | 0.00 | 45.31 | 1.89 |
4204 | 4610 | 8.553459 | AGTTACTTGGAGTAATCAAATGACTG | 57.447 | 34.615 | 4.08 | 0.00 | 42.06 | 3.51 |
4205 | 4611 | 8.157476 | AGTTACTTGGAGTAATCAAATGACTGT | 58.843 | 33.333 | 4.08 | 0.00 | 42.06 | 3.55 |
4206 | 4612 | 8.443937 | GTTACTTGGAGTAATCAAATGACTGTC | 58.556 | 37.037 | 0.00 | 0.00 | 42.06 | 3.51 |
4207 | 4613 | 6.773638 | ACTTGGAGTAATCAAATGACTGTCT | 58.226 | 36.000 | 9.51 | 0.00 | 0.00 | 3.41 |
4208 | 4614 | 6.652481 | ACTTGGAGTAATCAAATGACTGTCTG | 59.348 | 38.462 | 9.51 | 0.00 | 0.00 | 3.51 |
4209 | 4615 | 6.358974 | TGGAGTAATCAAATGACTGTCTGA | 57.641 | 37.500 | 9.51 | 5.08 | 0.00 | 3.27 |
4210 | 4616 | 6.950842 | TGGAGTAATCAAATGACTGTCTGAT | 58.049 | 36.000 | 9.51 | 7.22 | 0.00 | 2.90 |
4211 | 4617 | 7.397221 | TGGAGTAATCAAATGACTGTCTGATT | 58.603 | 34.615 | 20.51 | 20.51 | 40.62 | 2.57 |
4212 | 4618 | 7.550551 | TGGAGTAATCAAATGACTGTCTGATTC | 59.449 | 37.037 | 20.37 | 14.44 | 38.91 | 2.52 |
4213 | 4619 | 7.768120 | GGAGTAATCAAATGACTGTCTGATTCT | 59.232 | 37.037 | 20.37 | 17.34 | 38.91 | 2.40 |
4214 | 4620 | 8.489990 | AGTAATCAAATGACTGTCTGATTCTG | 57.510 | 34.615 | 20.37 | 9.92 | 38.91 | 3.02 |
4215 | 4621 | 5.814764 | ATCAAATGACTGTCTGATTCTGC | 57.185 | 39.130 | 9.51 | 0.00 | 0.00 | 4.26 |
4216 | 4622 | 3.681417 | TCAAATGACTGTCTGATTCTGCG | 59.319 | 43.478 | 9.51 | 0.00 | 0.00 | 5.18 |
4217 | 4623 | 3.325293 | AATGACTGTCTGATTCTGCGT | 57.675 | 42.857 | 9.51 | 0.00 | 0.00 | 5.24 |
4218 | 4624 | 2.070262 | TGACTGTCTGATTCTGCGTG | 57.930 | 50.000 | 9.51 | 0.00 | 0.00 | 5.34 |
4219 | 4625 | 1.341209 | TGACTGTCTGATTCTGCGTGT | 59.659 | 47.619 | 9.51 | 0.00 | 0.00 | 4.49 |
4220 | 4626 | 2.556622 | TGACTGTCTGATTCTGCGTGTA | 59.443 | 45.455 | 9.51 | 0.00 | 0.00 | 2.90 |
4221 | 4627 | 3.005367 | TGACTGTCTGATTCTGCGTGTAA | 59.995 | 43.478 | 9.51 | 0.00 | 0.00 | 2.41 |
4222 | 4628 | 3.987868 | GACTGTCTGATTCTGCGTGTAAA | 59.012 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
4223 | 4629 | 3.990469 | ACTGTCTGATTCTGCGTGTAAAG | 59.010 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
4224 | 4630 | 3.990092 | TGTCTGATTCTGCGTGTAAAGT | 58.010 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
4225 | 4631 | 4.377021 | TGTCTGATTCTGCGTGTAAAGTT | 58.623 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
4226 | 4632 | 5.534407 | TGTCTGATTCTGCGTGTAAAGTTA | 58.466 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
4227 | 4633 | 5.633601 | TGTCTGATTCTGCGTGTAAAGTTAG | 59.366 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
4228 | 4634 | 5.634020 | GTCTGATTCTGCGTGTAAAGTTAGT | 59.366 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4229 | 4635 | 6.805271 | GTCTGATTCTGCGTGTAAAGTTAGTA | 59.195 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
4230 | 4636 | 7.488471 | GTCTGATTCTGCGTGTAAAGTTAGTAT | 59.512 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
4231 | 4637 | 8.680001 | TCTGATTCTGCGTGTAAAGTTAGTATA | 58.320 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
4232 | 4638 | 9.297586 | CTGATTCTGCGTGTAAAGTTAGTATAA | 57.702 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
4233 | 4639 | 9.642327 | TGATTCTGCGTGTAAAGTTAGTATAAA | 57.358 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4235 | 4641 | 9.649167 | ATTCTGCGTGTAAAGTTAGTATAAAGT | 57.351 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4236 | 4642 | 9.480053 | TTCTGCGTGTAAAGTTAGTATAAAGTT | 57.520 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4237 | 4643 | 8.918658 | TCTGCGTGTAAAGTTAGTATAAAGTTG | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4238 | 4644 | 8.815141 | TGCGTGTAAAGTTAGTATAAAGTTGA | 57.185 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
4239 | 4645 | 8.918658 | TGCGTGTAAAGTTAGTATAAAGTTGAG | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4240 | 4646 | 9.132521 | GCGTGTAAAGTTAGTATAAAGTTGAGA | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
4257 | 4663 | 7.653767 | AGTTGAGACACTTATTTTAAGACGG | 57.346 | 36.000 | 1.47 | 0.00 | 0.00 | 4.79 |
4258 | 4664 | 7.439381 | AGTTGAGACACTTATTTTAAGACGGA | 58.561 | 34.615 | 1.47 | 0.00 | 0.00 | 4.69 |
4259 | 4665 | 7.599245 | AGTTGAGACACTTATTTTAAGACGGAG | 59.401 | 37.037 | 1.47 | 0.00 | 0.00 | 4.63 |
4260 | 4666 | 6.395629 | TGAGACACTTATTTTAAGACGGAGG | 58.604 | 40.000 | 1.47 | 0.00 | 0.00 | 4.30 |
4261 | 4667 | 5.731591 | AGACACTTATTTTAAGACGGAGGG | 58.268 | 41.667 | 1.47 | 0.00 | 0.00 | 4.30 |
4262 | 4668 | 5.482878 | AGACACTTATTTTAAGACGGAGGGA | 59.517 | 40.000 | 1.47 | 0.00 | 0.00 | 4.20 |
4361 | 4769 | 0.392998 | GTGCGGTTGATCAGGTCCAT | 60.393 | 55.000 | 12.04 | 0.00 | 0.00 | 3.41 |
4362 | 4770 | 0.107703 | TGCGGTTGATCAGGTCCATC | 60.108 | 55.000 | 12.04 | 0.00 | 0.00 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.395862 | TCAGCTTCTACTCCCTCCGG | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1 | 2 | 0.741915 | GTCAGCTTCTACTCCCTCCG | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2 | 3 | 0.741915 | CGTCAGCTTCTACTCCCTCC | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3 | 4 | 0.741915 | CCGTCAGCTTCTACTCCCTC | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4 | 5 | 1.324005 | GCCGTCAGCTTCTACTCCCT | 61.324 | 60.000 | 0.00 | 0.00 | 38.99 | 4.20 |
5 | 6 | 1.142097 | GCCGTCAGCTTCTACTCCC | 59.858 | 63.158 | 0.00 | 0.00 | 38.99 | 4.30 |
6 | 7 | 1.226717 | CGCCGTCAGCTTCTACTCC | 60.227 | 63.158 | 0.00 | 0.00 | 40.39 | 3.85 |
7 | 8 | 1.874466 | GCGCCGTCAGCTTCTACTC | 60.874 | 63.158 | 0.00 | 0.00 | 40.39 | 2.59 |
8 | 9 | 2.182030 | GCGCCGTCAGCTTCTACT | 59.818 | 61.111 | 0.00 | 0.00 | 40.39 | 2.57 |
9 | 10 | 3.248171 | CGCGCCGTCAGCTTCTAC | 61.248 | 66.667 | 0.00 | 0.00 | 40.39 | 2.59 |
20 | 21 | 4.838486 | GACTCTGGAGACGCGCCG | 62.838 | 72.222 | 5.73 | 0.00 | 0.00 | 6.46 |
23 | 24 | 2.041115 | TCTGGACTCTGGAGACGCG | 61.041 | 63.158 | 3.53 | 3.53 | 0.00 | 6.01 |
24 | 25 | 1.244697 | TGTCTGGACTCTGGAGACGC | 61.245 | 60.000 | 4.49 | 0.00 | 39.23 | 5.19 |
62 | 63 | 1.764571 | TACTCAAGCGGTTGGTGCCT | 61.765 | 55.000 | 25.70 | 7.72 | 34.09 | 4.75 |
64 | 65 | 1.912371 | GCTACTCAAGCGGTTGGTGC | 61.912 | 60.000 | 25.70 | 20.58 | 42.53 | 5.01 |
77 | 78 | 1.005630 | CCATGCCGGCTAGCTACTC | 60.006 | 63.158 | 29.70 | 2.44 | 0.00 | 2.59 |
83 | 84 | 2.423446 | GACTCCCATGCCGGCTAG | 59.577 | 66.667 | 29.70 | 19.52 | 0.00 | 3.42 |
86 | 87 | 2.650813 | CTAGTGACTCCCATGCCGGC | 62.651 | 65.000 | 22.73 | 22.73 | 0.00 | 6.13 |
102 | 103 | 2.413502 | GCGTGAGTGAGTGACTGACTAG | 60.414 | 54.545 | 4.31 | 1.32 | 36.70 | 2.57 |
144 | 146 | 4.753662 | ACCATGCTGGCTGGCTGG | 62.754 | 66.667 | 9.98 | 7.83 | 42.67 | 4.85 |
145 | 147 | 2.678934 | AACCATGCTGGCTGGCTG | 60.679 | 61.111 | 2.00 | 2.91 | 42.67 | 4.85 |
146 | 148 | 2.362120 | GAACCATGCTGGCTGGCT | 60.362 | 61.111 | 2.00 | 0.69 | 42.67 | 4.75 |
147 | 149 | 2.362120 | AGAACCATGCTGGCTGGC | 60.362 | 61.111 | 9.70 | 0.00 | 42.67 | 4.85 |
148 | 150 | 1.001764 | TGAGAACCATGCTGGCTGG | 60.002 | 57.895 | 2.50 | 8.67 | 42.67 | 4.85 |
149 | 151 | 0.322277 | AGTGAGAACCATGCTGGCTG | 60.322 | 55.000 | 2.50 | 0.00 | 42.67 | 4.85 |
150 | 152 | 0.403271 | AAGTGAGAACCATGCTGGCT | 59.597 | 50.000 | 2.50 | 0.00 | 42.67 | 4.75 |
151 | 153 | 0.807496 | GAAGTGAGAACCATGCTGGC | 59.193 | 55.000 | 2.50 | 0.00 | 42.67 | 4.85 |
152 | 154 | 2.027377 | AGAGAAGTGAGAACCATGCTGG | 60.027 | 50.000 | 1.16 | 1.16 | 45.02 | 4.85 |
153 | 155 | 3.055963 | AGAGAGAAGTGAGAACCATGCTG | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
154 | 156 | 3.172339 | AGAGAGAAGTGAGAACCATGCT | 58.828 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
175 | 177 | 1.124780 | TCCGGTGTTGAAGGACAGAA | 58.875 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
176 | 178 | 1.275291 | GATCCGGTGTTGAAGGACAGA | 59.725 | 52.381 | 0.00 | 0.00 | 36.81 | 3.41 |
177 | 179 | 1.676014 | GGATCCGGTGTTGAAGGACAG | 60.676 | 57.143 | 0.00 | 0.00 | 36.81 | 3.51 |
178 | 180 | 0.323629 | GGATCCGGTGTTGAAGGACA | 59.676 | 55.000 | 0.00 | 0.00 | 36.81 | 4.02 |
179 | 181 | 0.323629 | TGGATCCGGTGTTGAAGGAC | 59.676 | 55.000 | 7.39 | 0.00 | 36.81 | 3.85 |
180 | 182 | 1.060729 | TTGGATCCGGTGTTGAAGGA | 58.939 | 50.000 | 7.39 | 0.00 | 38.56 | 3.36 |
181 | 183 | 1.165270 | GTTGGATCCGGTGTTGAAGG | 58.835 | 55.000 | 7.39 | 0.00 | 0.00 | 3.46 |
190 | 192 | 2.437716 | CGGTTGGGTTGGATCCGG | 60.438 | 66.667 | 7.39 | 0.00 | 37.92 | 5.14 |
212 | 214 | 2.067013 | GTCTACAGCTCCGTTTGGTTC | 58.933 | 52.381 | 0.00 | 0.00 | 36.30 | 3.62 |
321 | 354 | 0.036010 | AATGGAACCTCTGGCGAGTG | 60.036 | 55.000 | 0.00 | 0.00 | 35.43 | 3.51 |
402 | 435 | 3.372554 | GAAGGGAAGGAGTCGGGCG | 62.373 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
403 | 436 | 1.962321 | GAGAAGGGAAGGAGTCGGGC | 61.962 | 65.000 | 0.00 | 0.00 | 0.00 | 6.13 |
409 | 463 | 2.826725 | ACGTACAAGAGAAGGGAAGGAG | 59.173 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
442 | 496 | 3.998672 | GAGTTGGTCCACGGCGGA | 61.999 | 66.667 | 13.24 | 0.00 | 43.61 | 5.54 |
444 | 498 | 2.274232 | TATCGAGTTGGTCCACGGCG | 62.274 | 60.000 | 4.80 | 4.80 | 0.00 | 6.46 |
445 | 499 | 0.108520 | TTATCGAGTTGGTCCACGGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
446 | 500 | 2.201732 | CATTATCGAGTTGGTCCACGG | 58.798 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
462 | 516 | 1.271840 | AAGGAGAGGGGCGTGCATTA | 61.272 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
465 | 519 | 4.020617 | CAAGGAGAGGGGCGTGCA | 62.021 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
466 | 520 | 4.021925 | ACAAGGAGAGGGGCGTGC | 62.022 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
467 | 521 | 1.903877 | ATCACAAGGAGAGGGGCGTG | 61.904 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
468 | 522 | 1.613630 | ATCACAAGGAGAGGGGCGT | 60.614 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
470 | 524 | 1.529309 | GGATCACAAGGAGAGGGGC | 59.471 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
480 | 593 | 1.153449 | GACGATGGCGGGATCACAA | 60.153 | 57.895 | 0.00 | 0.00 | 43.17 | 3.33 |
484 | 597 | 0.319125 | GAGAAGACGATGGCGGGATC | 60.319 | 60.000 | 0.00 | 0.00 | 43.17 | 3.36 |
485 | 598 | 1.742768 | GAGAAGACGATGGCGGGAT | 59.257 | 57.895 | 0.00 | 0.00 | 43.17 | 3.85 |
491 | 605 | 1.227089 | CAGGCGGAGAAGACGATGG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
493 | 607 | 2.496817 | GCAGGCGGAGAAGACGAT | 59.503 | 61.111 | 0.00 | 0.00 | 0.00 | 3.73 |
494 | 608 | 3.760035 | GGCAGGCGGAGAAGACGA | 61.760 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
497 | 611 | 2.604686 | AGTGGCAGGCGGAGAAGA | 60.605 | 61.111 | 0.00 | 0.00 | 0.00 | 2.87 |
511 | 625 | 1.679898 | GTCCCCTCCCTTGTCAGTG | 59.320 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
514 | 628 | 2.606519 | CCGTCCCCTCCCTTGTCA | 60.607 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
516 | 630 | 2.284699 | CTCCGTCCCCTCCCTTGT | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
551 | 669 | 2.681152 | CCGTTCAAATAATAGCGGGC | 57.319 | 50.000 | 0.00 | 0.00 | 36.05 | 6.13 |
556 | 674 | 5.043737 | TCCCTTCCCCGTTCAAATAATAG | 57.956 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
565 | 683 | 1.305887 | TCTCCTCCCTTCCCCGTTC | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
566 | 684 | 1.306226 | CTCTCCTCCCTTCCCCGTT | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 4.44 |
586 | 704 | 1.810030 | GCCGCTCCCTTGTCTAACG | 60.810 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
588 | 706 | 1.916273 | TGGCCGCTCCCTTGTCTAA | 60.916 | 57.895 | 0.00 | 0.00 | 0.00 | 2.10 |
601 | 719 | 4.592192 | ATCGATCGCAGGTGGCCG | 62.592 | 66.667 | 11.09 | 0.00 | 40.31 | 6.13 |
613 | 735 | 3.664107 | CGGTGGATTTACATGGATCGAT | 58.336 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
616 | 738 | 2.549754 | CAGCGGTGGATTTACATGGATC | 59.450 | 50.000 | 6.74 | 0.00 | 0.00 | 3.36 |
646 | 776 | 4.610945 | GCAAATGGTAATTTCCATCGGAG | 58.389 | 43.478 | 16.10 | 8.33 | 46.14 | 4.63 |
650 | 780 | 7.165427 | GAAATCGCAAATGGTAATTTCCATC | 57.835 | 36.000 | 16.10 | 4.49 | 46.14 | 3.51 |
656 | 786 | 4.680440 | GCAGGGAAATCGCAAATGGTAATT | 60.680 | 41.667 | 0.14 | 0.00 | 0.00 | 1.40 |
662 | 792 | 0.526096 | CGGCAGGGAAATCGCAAATG | 60.526 | 55.000 | 0.14 | 0.00 | 0.00 | 2.32 |
663 | 793 | 1.809207 | CGGCAGGGAAATCGCAAAT | 59.191 | 52.632 | 0.14 | 0.00 | 0.00 | 2.32 |
665 | 795 | 3.439540 | GCGGCAGGGAAATCGCAA | 61.440 | 61.111 | 0.00 | 0.00 | 46.33 | 4.85 |
669 | 804 | 1.376609 | ATCGTTGCGGCAGGGAAATC | 61.377 | 55.000 | 1.67 | 0.00 | 0.00 | 2.17 |
680 | 815 | 0.808125 | TGGGGATTCAAATCGTTGCG | 59.192 | 50.000 | 0.00 | 0.00 | 36.27 | 4.85 |
684 | 819 | 3.627577 | CGATCTTTGGGGATTCAAATCGT | 59.372 | 43.478 | 0.00 | 0.00 | 35.84 | 3.73 |
695 | 830 | 0.328258 | AACCAGTCCGATCTTTGGGG | 59.672 | 55.000 | 0.00 | 0.00 | 34.99 | 4.96 |
699 | 834 | 2.685100 | GACGAAACCAGTCCGATCTTT | 58.315 | 47.619 | 0.00 | 0.00 | 32.78 | 2.52 |
701 | 836 | 0.170561 | CGACGAAACCAGTCCGATCT | 59.829 | 55.000 | 0.00 | 0.00 | 35.33 | 2.75 |
705 | 840 | 0.318445 | AGAACGACGAAACCAGTCCG | 60.318 | 55.000 | 0.00 | 0.00 | 35.33 | 4.79 |
706 | 841 | 1.137513 | CAGAACGACGAAACCAGTCC | 58.862 | 55.000 | 0.00 | 0.00 | 35.33 | 3.85 |
708 | 843 | 0.462789 | ACCAGAACGACGAAACCAGT | 59.537 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
709 | 844 | 0.859232 | CACCAGAACGACGAAACCAG | 59.141 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
714 | 849 | 0.594602 | ACGATCACCAGAACGACGAA | 59.405 | 50.000 | 0.00 | 0.00 | 41.92 | 3.85 |
716 | 851 | 0.168348 | AGACGATCACCAGAACGACG | 59.832 | 55.000 | 2.23 | 0.00 | 41.92 | 5.12 |
717 | 852 | 2.791849 | GCTAGACGATCACCAGAACGAC | 60.792 | 54.545 | 0.00 | 0.00 | 41.92 | 4.34 |
718 | 853 | 1.400846 | GCTAGACGATCACCAGAACGA | 59.599 | 52.381 | 0.00 | 0.00 | 41.92 | 3.85 |
719 | 854 | 1.828832 | GCTAGACGATCACCAGAACG | 58.171 | 55.000 | 0.00 | 0.00 | 44.48 | 3.95 |
739 | 874 | 6.310197 | CAAGAAAGAATCACTCGACCAAATC | 58.690 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
747 | 882 | 4.757149 | AGGAAACCAAGAAAGAATCACTCG | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
751 | 886 | 6.985188 | CGATAGGAAACCAAGAAAGAATCA | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
769 | 904 | 4.035208 | GCATACCCAAAAGACAACCGATAG | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
771 | 906 | 2.752903 | GCATACCCAAAAGACAACCGAT | 59.247 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
776 | 911 | 7.901029 | TGATTATTTGCATACCCAAAAGACAA | 58.099 | 30.769 | 0.00 | 0.00 | 38.12 | 3.18 |
778 | 913 | 7.439056 | CCATGATTATTTGCATACCCAAAAGAC | 59.561 | 37.037 | 0.00 | 0.00 | 38.12 | 3.01 |
780 | 915 | 7.499292 | TCCATGATTATTTGCATACCCAAAAG | 58.501 | 34.615 | 0.00 | 0.00 | 38.12 | 2.27 |
783 | 918 | 7.289549 | TCATTCCATGATTATTTGCATACCCAA | 59.710 | 33.333 | 0.00 | 0.00 | 33.59 | 4.12 |
784 | 919 | 6.781507 | TCATTCCATGATTATTTGCATACCCA | 59.218 | 34.615 | 0.00 | 0.00 | 33.59 | 4.51 |
785 | 920 | 7.230849 | TCATTCCATGATTATTTGCATACCC | 57.769 | 36.000 | 0.00 | 0.00 | 33.59 | 3.69 |
821 | 956 | 7.539366 | GGTACAAATGCAGTAGCGAAAATAAAA | 59.461 | 33.333 | 0.00 | 0.00 | 46.23 | 1.52 |
822 | 957 | 7.024768 | GGTACAAATGCAGTAGCGAAAATAAA | 58.975 | 34.615 | 0.00 | 0.00 | 46.23 | 1.40 |
825 | 960 | 4.457603 | TGGTACAAATGCAGTAGCGAAAAT | 59.542 | 37.500 | 8.65 | 0.00 | 41.52 | 1.82 |
828 | 963 | 3.000041 | CTGGTACAAATGCAGTAGCGAA | 59.000 | 45.455 | 8.65 | 0.00 | 41.13 | 4.70 |
830 | 965 | 1.665679 | CCTGGTACAAATGCAGTAGCG | 59.334 | 52.381 | 8.65 | 4.79 | 41.13 | 4.26 |
846 | 981 | 5.603170 | ATTTGTAATGATCCTTTGCCTGG | 57.397 | 39.130 | 0.00 | 0.00 | 0.00 | 4.45 |
851 | 986 | 7.641411 | CACGAGCTTATTTGTAATGATCCTTTG | 59.359 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
856 | 991 | 8.012241 | GGATTCACGAGCTTATTTGTAATGATC | 58.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
857 | 992 | 7.041098 | GGGATTCACGAGCTTATTTGTAATGAT | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 2.45 |
859 | 994 | 6.430451 | GGGATTCACGAGCTTATTTGTAATG | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
871 | 1009 | 4.814294 | ACGCGGGGATTCACGAGC | 62.814 | 66.667 | 12.47 | 0.26 | 33.14 | 5.03 |
882 | 1020 | 2.559998 | ATAAAGCAAATTGACGCGGG | 57.440 | 45.000 | 12.47 | 0.00 | 0.00 | 6.13 |
1134 | 1444 | 1.144936 | GCTATGCGTGAGGGCTTCT | 59.855 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
1260 | 1570 | 2.103934 | CTCTTGAGCTCCTCGGCG | 59.896 | 66.667 | 12.15 | 0.00 | 37.29 | 6.46 |
1284 | 1594 | 1.215647 | GTGCGAGTTCTCACCGGAT | 59.784 | 57.895 | 9.46 | 0.00 | 0.00 | 4.18 |
1330 | 1640 | 5.065731 | ACTCAAGAAGTTTGTCAAGCTTCAG | 59.934 | 40.000 | 31.48 | 24.69 | 40.57 | 3.02 |
1362 | 1672 | 3.467803 | CTCTCCCACGTTTTTCTTGACT | 58.532 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1404 | 1714 | 2.416547 | CAGGGTAATGACTTTGACGCAG | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1442 | 1752 | 4.335594 | GGAACTTAGCTTCGGCAATGTAAT | 59.664 | 41.667 | 0.00 | 0.00 | 44.74 | 1.89 |
1452 | 1762 | 1.936547 | GCAGGATGGAACTTAGCTTCG | 59.063 | 52.381 | 0.00 | 0.00 | 35.86 | 3.79 |
1530 | 1840 | 4.586841 | TGTCTCCCAACCACCTTTTTAATG | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
1560 | 1870 | 3.618594 | TCTCGATGTGCAGCTTTATCAAC | 59.381 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1561 | 1871 | 3.860641 | TCTCGATGTGCAGCTTTATCAA | 58.139 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1947 | 2257 | 1.000521 | TGCAAGGAAGGGCTGATGG | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
2289 | 2599 | 6.421202 | CCTTCTTTATAACCATCTGCTCGTAC | 59.579 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
2292 | 2602 | 5.601662 | TCCTTCTTTATAACCATCTGCTCG | 58.398 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
2544 | 2854 | 4.125703 | GAGCATACATCCTGTTGAGAAGG | 58.874 | 47.826 | 0.00 | 0.00 | 36.02 | 3.46 |
2685 | 2995 | 2.272918 | AAGTAGCGCGAGACCTCTGC | 62.273 | 60.000 | 12.10 | 0.00 | 0.00 | 4.26 |
2686 | 2996 | 0.171455 | AAAGTAGCGCGAGACCTCTG | 59.829 | 55.000 | 12.10 | 0.00 | 0.00 | 3.35 |
2697 | 3007 | 1.263776 | CTCGAGCAGTCAAAGTAGCG | 58.736 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2812 | 3122 | 4.652822 | GGTGTTTCTTCCACTATCCAGTT | 58.347 | 43.478 | 0.00 | 0.00 | 30.46 | 3.16 |
2895 | 3205 | 2.987232 | AGTGGTAAAATCTCCGAAGCC | 58.013 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
3111 | 3421 | 0.804989 | CCAAGCAATCCCTGAACGTC | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3120 | 3430 | 3.067320 | GCCTTATCTCAACCAAGCAATCC | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3213 | 3523 | 0.738975 | TCTTGTAGTCCAGCGATCCG | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3457 | 3767 | 0.319297 | AGACGCGTCTTGTAACCACC | 60.319 | 55.000 | 34.98 | 7.02 | 36.31 | 4.61 |
3513 | 3831 | 7.466804 | TGAAAATTATTTGAGGGGACTACTGT | 58.533 | 34.615 | 0.00 | 0.00 | 44.43 | 3.55 |
3521 | 3839 | 9.948964 | AGAGAAAATTGAAAATTATTTGAGGGG | 57.051 | 29.630 | 0.00 | 0.00 | 0.00 | 4.79 |
3552 | 3870 | 3.627577 | GTGTGCCTATATCACAGGGTTTG | 59.372 | 47.826 | 7.87 | 0.00 | 44.11 | 2.93 |
3556 | 3874 | 3.558931 | TTGTGTGCCTATATCACAGGG | 57.441 | 47.619 | 7.87 | 0.00 | 44.11 | 4.45 |
3647 | 3965 | 9.868160 | TTCAAACTATGTCCTCTGAGAGATATA | 57.132 | 33.333 | 11.82 | 8.79 | 0.00 | 0.86 |
3648 | 3966 | 8.774546 | TTCAAACTATGTCCTCTGAGAGATAT | 57.225 | 34.615 | 11.82 | 8.15 | 0.00 | 1.63 |
3733 | 4115 | 8.270030 | ACCGTATGCTAGTAGTATATACCATCA | 58.730 | 37.037 | 10.67 | 0.78 | 0.00 | 3.07 |
3737 | 4119 | 9.039870 | CACTACCGTATGCTAGTAGTATATACC | 57.960 | 40.741 | 10.67 | 0.00 | 43.65 | 2.73 |
3743 | 4125 | 5.296151 | ACCACTACCGTATGCTAGTAGTA | 57.704 | 43.478 | 11.37 | 0.00 | 43.65 | 1.82 |
3744 | 4126 | 4.162040 | ACCACTACCGTATGCTAGTAGT | 57.838 | 45.455 | 7.42 | 7.42 | 45.77 | 2.73 |
3745 | 4127 | 4.577693 | TGAACCACTACCGTATGCTAGTAG | 59.422 | 45.833 | 6.40 | 6.40 | 39.50 | 2.57 |
3796 | 4193 | 1.658095 | GCTTGTCTCTGCAAGTCGATC | 59.342 | 52.381 | 7.51 | 0.00 | 45.47 | 3.69 |
3859 | 4258 | 4.237349 | AGCACAGGAATTTTTACCGTTG | 57.763 | 40.909 | 0.00 | 0.00 | 0.00 | 4.10 |
3860 | 4259 | 4.929819 | AAGCACAGGAATTTTTACCGTT | 57.070 | 36.364 | 0.00 | 0.00 | 0.00 | 4.44 |
3861 | 4260 | 6.094464 | GGTATAAGCACAGGAATTTTTACCGT | 59.906 | 38.462 | 0.00 | 0.00 | 0.00 | 4.83 |
3862 | 4261 | 6.094325 | TGGTATAAGCACAGGAATTTTTACCG | 59.906 | 38.462 | 0.00 | 0.00 | 32.92 | 4.02 |
3907 | 4307 | 6.118170 | ACATGTTCCATGTCTTTATCTCCAG | 58.882 | 40.000 | 4.08 | 0.00 | 0.00 | 3.86 |
3915 | 4315 | 2.747446 | GCCGTACATGTTCCATGTCTTT | 59.253 | 45.455 | 12.75 | 0.00 | 33.76 | 2.52 |
3939 | 4339 | 4.689071 | ACACACACGTATTCAGACTGAAA | 58.311 | 39.130 | 21.29 | 8.65 | 40.12 | 2.69 |
3946 | 4346 | 4.523813 | GAACCAAACACACACGTATTCAG | 58.476 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3960 | 4360 | 5.637006 | TTACATGTATGCAGGAACCAAAC | 57.363 | 39.130 | 6.36 | 0.00 | 0.00 | 2.93 |
4030 | 4436 | 2.930826 | TTCAGTCTTCCAGGTTGACC | 57.069 | 50.000 | 9.83 | 0.00 | 0.00 | 4.02 |
4096 | 4502 | 2.095364 | CAGAATTGACTTGGTGCTGCTC | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4118 | 4524 | 3.745799 | TGGACAAAAGGAATCGTGCTTA | 58.254 | 40.909 | 0.00 | 0.00 | 33.69 | 3.09 |
4122 | 4528 | 3.057315 | AGCATTGGACAAAAGGAATCGTG | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
4136 | 4542 | 4.537751 | ACTAGTACTCAGCTAGCATTGGA | 58.462 | 43.478 | 18.83 | 7.80 | 39.48 | 3.53 |
4137 | 4543 | 4.927978 | ACTAGTACTCAGCTAGCATTGG | 57.072 | 45.455 | 18.83 | 6.48 | 39.48 | 3.16 |
4149 | 4555 | 7.042119 | GGTTTCCGATCTACAGTACTAGTACTC | 60.042 | 44.444 | 28.86 | 17.26 | 43.98 | 2.59 |
4150 | 4556 | 6.765512 | GGTTTCCGATCTACAGTACTAGTACT | 59.234 | 42.308 | 26.61 | 26.61 | 46.52 | 2.73 |
4151 | 4557 | 6.540189 | TGGTTTCCGATCTACAGTACTAGTAC | 59.460 | 42.308 | 23.03 | 23.03 | 36.35 | 2.73 |
4152 | 4558 | 6.653020 | TGGTTTCCGATCTACAGTACTAGTA | 58.347 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4153 | 4559 | 5.503927 | TGGTTTCCGATCTACAGTACTAGT | 58.496 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4154 | 4560 | 6.446781 | TTGGTTTCCGATCTACAGTACTAG | 57.553 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4155 | 4561 | 6.839124 | TTTGGTTTCCGATCTACAGTACTA | 57.161 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4156 | 4562 | 5.733620 | TTTGGTTTCCGATCTACAGTACT | 57.266 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
4157 | 4563 | 5.930569 | ACTTTTGGTTTCCGATCTACAGTAC | 59.069 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4177 | 4583 | 9.574516 | AGTCATTTGATTACTCCAAGTAACTTT | 57.425 | 29.630 | 1.85 | 0.00 | 42.78 | 2.66 |
4180 | 4586 | 8.324163 | ACAGTCATTTGATTACTCCAAGTAAC | 57.676 | 34.615 | 1.85 | 0.00 | 42.78 | 2.50 |
4194 | 4600 | 3.681417 | CGCAGAATCAGACAGTCATTTGA | 59.319 | 43.478 | 2.66 | 0.00 | 0.00 | 2.69 |
4204 | 4610 | 4.992381 | AACTTTACACGCAGAATCAGAC | 57.008 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
4205 | 4611 | 5.779922 | ACTAACTTTACACGCAGAATCAGA | 58.220 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
4206 | 4612 | 7.757097 | ATACTAACTTTACACGCAGAATCAG | 57.243 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4207 | 4613 | 9.642327 | TTTATACTAACTTTACACGCAGAATCA | 57.358 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4209 | 4615 | 9.649167 | ACTTTATACTAACTTTACACGCAGAAT | 57.351 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
4210 | 4616 | 9.480053 | AACTTTATACTAACTTTACACGCAGAA | 57.520 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
4211 | 4617 | 8.918658 | CAACTTTATACTAACTTTACACGCAGA | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
4212 | 4618 | 8.918658 | TCAACTTTATACTAACTTTACACGCAG | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 5.18 |
4213 | 4619 | 8.815141 | TCAACTTTATACTAACTTTACACGCA | 57.185 | 30.769 | 0.00 | 0.00 | 0.00 | 5.24 |
4214 | 4620 | 9.132521 | TCTCAACTTTATACTAACTTTACACGC | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 5.34 |
4231 | 4637 | 8.557029 | CCGTCTTAAAATAAGTGTCTCAACTTT | 58.443 | 33.333 | 0.00 | 0.00 | 40.77 | 2.66 |
4232 | 4638 | 7.929785 | TCCGTCTTAAAATAAGTGTCTCAACTT | 59.070 | 33.333 | 0.00 | 0.00 | 42.89 | 2.66 |
4233 | 4639 | 7.439381 | TCCGTCTTAAAATAAGTGTCTCAACT | 58.561 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4234 | 4640 | 7.148623 | CCTCCGTCTTAAAATAAGTGTCTCAAC | 60.149 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
4235 | 4641 | 6.872020 | CCTCCGTCTTAAAATAAGTGTCTCAA | 59.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4236 | 4642 | 6.395629 | CCTCCGTCTTAAAATAAGTGTCTCA | 58.604 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4237 | 4643 | 5.811100 | CCCTCCGTCTTAAAATAAGTGTCTC | 59.189 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4238 | 4644 | 5.482878 | TCCCTCCGTCTTAAAATAAGTGTCT | 59.517 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4239 | 4645 | 5.727434 | TCCCTCCGTCTTAAAATAAGTGTC | 58.273 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
4240 | 4646 | 5.247792 | ACTCCCTCCGTCTTAAAATAAGTGT | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4241 | 4647 | 5.731591 | ACTCCCTCCGTCTTAAAATAAGTG | 58.268 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
4242 | 4648 | 7.486407 | TTACTCCCTCCGTCTTAAAATAAGT | 57.514 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4243 | 4649 | 8.827677 | CAATTACTCCCTCCGTCTTAAAATAAG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
4244 | 4650 | 8.542080 | TCAATTACTCCCTCCGTCTTAAAATAA | 58.458 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4245 | 4651 | 8.081517 | TCAATTACTCCCTCCGTCTTAAAATA | 57.918 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4246 | 4652 | 6.954232 | TCAATTACTCCCTCCGTCTTAAAAT | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4247 | 4653 | 6.363167 | TCAATTACTCCCTCCGTCTTAAAA | 57.637 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
4248 | 4654 | 6.555463 | ATCAATTACTCCCTCCGTCTTAAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
4249 | 4655 | 6.555463 | AATCAATTACTCCCTCCGTCTTAA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
4250 | 4656 | 6.239232 | GCTAATCAATTACTCCCTCCGTCTTA | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
4251 | 4657 | 5.453480 | GCTAATCAATTACTCCCTCCGTCTT | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4252 | 4658 | 4.039366 | GCTAATCAATTACTCCCTCCGTCT | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
4253 | 4659 | 4.202223 | TGCTAATCAATTACTCCCTCCGTC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4254 | 4660 | 3.709653 | TGCTAATCAATTACTCCCTCCGT | 59.290 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
4255 | 4661 | 4.310769 | CTGCTAATCAATTACTCCCTCCG | 58.689 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
4256 | 4662 | 4.103311 | ACCTGCTAATCAATTACTCCCTCC | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4257 | 4663 | 5.163301 | TGACCTGCTAATCAATTACTCCCTC | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4258 | 4664 | 4.721776 | TGACCTGCTAATCAATTACTCCCT | 59.278 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
4259 | 4665 | 5.036117 | TGACCTGCTAATCAATTACTCCC | 57.964 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4260 | 4666 | 5.297029 | GGTTGACCTGCTAATCAATTACTCC | 59.703 | 44.000 | 0.00 | 0.00 | 37.19 | 3.85 |
4261 | 4667 | 5.880332 | TGGTTGACCTGCTAATCAATTACTC | 59.120 | 40.000 | 1.34 | 0.00 | 37.19 | 2.59 |
4262 | 4668 | 5.815581 | TGGTTGACCTGCTAATCAATTACT | 58.184 | 37.500 | 1.34 | 0.00 | 37.19 | 2.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.