Multiple sequence alignment - TraesCS4A01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G023800 chr4A 100.000 3704 0 0 780 4483 16972158 16968455 0.000000e+00 6841.0
1 TraesCS4A01G023800 chr4A 100.000 274 0 0 1 274 16972937 16972664 1.440000e-139 507.0
2 TraesCS4A01G023800 chr4B 91.257 2379 136 28 1433 3792 562705578 562707903 0.000000e+00 3175.0
3 TraesCS4A01G023800 chr4B 93.996 533 26 4 3952 4483 562708272 562708799 0.000000e+00 802.0
4 TraesCS4A01G023800 chr4B 85.809 451 37 17 780 1207 562704972 562705418 1.900000e-123 453.0
5 TraesCS4A01G023800 chr4B 82.988 241 16 11 56 274 562704620 562704857 1.270000e-45 195.0
6 TraesCS4A01G023800 chr4B 96.296 54 2 0 3795 3848 562708152 562708205 6.180000e-14 89.8
7 TraesCS4A01G023800 chr4D 91.980 1571 88 24 2231 3792 449979574 449981115 0.000000e+00 2169.0
8 TraesCS4A01G023800 chr4D 90.661 771 50 8 1433 2200 449978828 449979579 0.000000e+00 1005.0
9 TraesCS4A01G023800 chr4D 93.866 538 24 4 3952 4483 449981471 449982005 0.000000e+00 802.0
10 TraesCS4A01G023800 chr4D 85.619 452 35 16 780 1204 449978211 449978659 8.850000e-122 448.0
11 TraesCS4A01G023800 chr4D 86.420 324 41 3 2690 3011 20872393 20872071 7.130000e-93 351.0
12 TraesCS4A01G023800 chr4D 92.746 193 11 1 82 274 449977902 449978091 4.420000e-70 276.0
13 TraesCS4A01G023800 chr4D 93.939 99 6 0 3795 3893 449981365 449981463 2.790000e-32 150.0
14 TraesCS4A01G023800 chr3A 90.221 634 57 2 2434 3063 562943808 562944440 0.000000e+00 822.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G023800 chr4A 16968455 16972937 4482 True 3674.000000 6841 100.0000 1 4483 2 chr4A.!!$R1 4482
1 TraesCS4A01G023800 chr4B 562704620 562708799 4179 False 942.960000 3175 90.0692 56 4483 5 chr4B.!!$F1 4427
2 TraesCS4A01G023800 chr4D 449977902 449982005 4103 False 808.333333 2169 91.4685 82 4483 6 chr4D.!!$F1 4401
3 TraesCS4A01G023800 chr3A 562943808 562944440 632 False 822.000000 822 90.2210 2434 3063 1 chr3A.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 202 0.871722 TTTGAGCCGTTCCATTCACG 59.128 50.0 0.00 0.00 37.39 4.35 F
1091 1135 0.104934 ATCCTCTGTATTCGCCCCCT 60.105 55.0 0.00 0.00 0.00 4.79 F
1751 1813 0.106819 AGGCATGGATTCTGCAGGTC 60.107 55.0 15.13 12.34 41.47 3.85 F
2757 2840 0.107945 CCTGGCTTAGAGGACAGTGC 60.108 60.0 0.00 0.00 40.53 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1915 0.103755 TGCACGGCTGAATTTGCAAA 59.896 45.0 15.44 15.44 41.90 3.68 R
2329 2401 0.108804 CAGGAAGGCATGCAAAGCTG 60.109 55.0 21.36 0.00 0.00 4.24 R
2955 3038 0.311790 AAGGTGCACATGAAACAGCG 59.688 50.0 20.43 0.00 36.92 5.18 R
3911 4262 0.320374 TGTTCCCCTCATCGTCACAC 59.680 55.0 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.477226 GATCCTTCGCTTTATTCGTAAATTTC 57.523 34.615 0.00 0.00 0.00 2.17
26 27 6.778108 TCCTTCGCTTTATTCGTAAATTTCC 58.222 36.000 0.00 0.00 0.00 3.13
27 28 5.675444 CCTTCGCTTTATTCGTAAATTTCCG 59.325 40.000 0.00 0.00 0.00 4.30
28 29 5.783100 TCGCTTTATTCGTAAATTTCCGT 57.217 34.783 2.98 0.00 0.00 4.69
29 30 5.788467 TCGCTTTATTCGTAAATTTCCGTC 58.212 37.500 2.98 0.00 0.00 4.79
30 31 5.348179 TCGCTTTATTCGTAAATTTCCGTCA 59.652 36.000 2.98 0.00 0.00 4.35
31 32 5.671140 CGCTTTATTCGTAAATTTCCGTCAG 59.329 40.000 2.98 0.00 0.00 3.51
32 33 6.454583 CGCTTTATTCGTAAATTTCCGTCAGA 60.455 38.462 2.98 0.00 0.00 3.27
33 34 7.238571 GCTTTATTCGTAAATTTCCGTCAGAA 58.761 34.615 2.98 0.00 0.00 3.02
34 35 7.908601 GCTTTATTCGTAAATTTCCGTCAGAAT 59.091 33.333 2.98 5.77 33.44 2.40
35 36 9.769093 CTTTATTCGTAAATTTCCGTCAGAATT 57.231 29.630 2.98 0.00 33.44 2.17
40 41 9.549509 TTCGTAAATTTCCGTCAGAATTTAATG 57.450 29.630 2.98 1.48 33.44 1.90
41 42 7.694784 TCGTAAATTTCCGTCAGAATTTAATGC 59.305 33.333 2.98 0.00 33.44 3.56
42 43 7.696453 CGTAAATTTCCGTCAGAATTTAATGCT 59.304 33.333 0.00 0.00 33.44 3.79
43 44 9.010366 GTAAATTTCCGTCAGAATTTAATGCTC 57.990 33.333 0.00 0.00 33.44 4.26
44 45 7.396540 AATTTCCGTCAGAATTTAATGCTCT 57.603 32.000 0.00 0.00 33.44 4.09
45 46 6.817765 TTTCCGTCAGAATTTAATGCTCTT 57.182 33.333 0.00 0.00 33.44 2.85
46 47 6.422776 TTCCGTCAGAATTTAATGCTCTTC 57.577 37.500 0.00 0.00 0.00 2.87
47 48 5.487433 TCCGTCAGAATTTAATGCTCTTCA 58.513 37.500 0.00 0.00 0.00 3.02
48 49 5.351465 TCCGTCAGAATTTAATGCTCTTCAC 59.649 40.000 0.00 0.00 0.00 3.18
49 50 5.352569 CCGTCAGAATTTAATGCTCTTCACT 59.647 40.000 0.00 0.00 0.00 3.41
50 51 6.456181 CCGTCAGAATTTAATGCTCTTCACTC 60.456 42.308 0.00 0.00 0.00 3.51
51 52 6.456181 CGTCAGAATTTAATGCTCTTCACTCC 60.456 42.308 0.00 0.00 0.00 3.85
52 53 6.372659 GTCAGAATTTAATGCTCTTCACTCCA 59.627 38.462 0.00 0.00 0.00 3.86
53 54 6.372659 TCAGAATTTAATGCTCTTCACTCCAC 59.627 38.462 0.00 0.00 0.00 4.02
54 55 5.649831 AGAATTTAATGCTCTTCACTCCACC 59.350 40.000 0.00 0.00 0.00 4.61
60 61 2.158623 TGCTCTTCACTCCACCACAATT 60.159 45.455 0.00 0.00 0.00 2.32
75 76 6.037062 CCACCACAATTTTGTTTTCTTCTTCC 59.963 38.462 0.00 0.00 39.91 3.46
77 78 6.593770 ACCACAATTTTGTTTTCTTCTTCCAC 59.406 34.615 0.00 0.00 39.91 4.02
78 79 6.037062 CCACAATTTTGTTTTCTTCTTCCACC 59.963 38.462 0.00 0.00 39.91 4.61
80 81 6.818142 ACAATTTTGTTTTCTTCTTCCACCTG 59.182 34.615 0.00 0.00 38.47 4.00
92 97 4.457466 TCTTCCACCTGTACAAGTTTTCC 58.543 43.478 0.00 0.00 0.00 3.13
99 104 3.303791 CCTGTACAAGTTTTCCGAGTTGC 60.304 47.826 0.00 0.00 34.10 4.17
105 110 1.416401 AGTTTTCCGAGTTGCTGAGGA 59.584 47.619 0.00 0.00 0.00 3.71
122 127 5.314923 TGAGGAATATTGCAACTGCTTTC 57.685 39.130 9.81 0.83 42.66 2.62
159 164 7.213678 AGATTCGGATAACCAAGAGAGAATTC 58.786 38.462 0.00 0.00 35.59 2.17
166 171 2.040412 ACCAAGAGAGAATTCCCACACC 59.960 50.000 0.65 0.00 0.00 4.16
167 172 2.350522 CAAGAGAGAATTCCCACACCG 58.649 52.381 0.65 0.00 0.00 4.94
168 173 1.938585 AGAGAGAATTCCCACACCGA 58.061 50.000 0.65 0.00 0.00 4.69
195 200 2.270352 ACTTTGAGCCGTTCCATTCA 57.730 45.000 0.00 0.00 0.00 2.57
197 202 0.871722 TTTGAGCCGTTCCATTCACG 59.128 50.000 0.00 0.00 37.39 4.35
208 213 1.202568 CATTCACGCGATCGCATCC 59.797 57.895 36.45 10.57 42.06 3.51
1011 1046 2.832498 GCCTACATGGAGGGCCTC 59.168 66.667 25.94 25.80 39.96 4.70
1073 1108 2.596046 TTGTTGCGGTGCGGGAAT 60.596 55.556 0.00 0.00 0.00 3.01
1091 1135 0.104934 ATCCTCTGTATTCGCCCCCT 60.105 55.000 0.00 0.00 0.00 4.79
1094 1138 1.070289 CCTCTGTATTCGCCCCCTAAC 59.930 57.143 0.00 0.00 0.00 2.34
1100 1144 0.255033 ATTCGCCCCCTAACTGTTCC 59.745 55.000 0.00 0.00 0.00 3.62
1103 1147 2.125269 CCCCCTAACTGTTCCGCG 60.125 66.667 0.00 0.00 0.00 6.46
1105 1149 2.660802 CCCTAACTGTTCCGCGGT 59.339 61.111 27.15 7.03 38.60 5.68
1106 1150 1.606885 CCCCTAACTGTTCCGCGGTA 61.607 60.000 27.15 14.12 35.19 4.02
1110 1154 1.990563 CTAACTGTTCCGCGGTAGTTG 59.009 52.381 33.79 25.22 35.19 3.16
1114 1158 2.190981 CTGTTCCGCGGTAGTTGATAC 58.809 52.381 27.15 11.40 0.00 2.24
1117 1161 3.443329 TGTTCCGCGGTAGTTGATACTTA 59.557 43.478 27.15 0.00 35.78 2.24
1120 1164 6.183360 TGTTCCGCGGTAGTTGATACTTAATA 60.183 38.462 27.15 2.12 35.78 0.98
1122 1166 5.532406 TCCGCGGTAGTTGATACTTAATAGT 59.468 40.000 27.15 0.00 35.78 2.12
1123 1167 5.855395 CCGCGGTAGTTGATACTTAATAGTC 59.145 44.000 19.50 0.00 35.78 2.59
1124 1168 6.293845 CCGCGGTAGTTGATACTTAATAGTCT 60.294 42.308 19.50 0.00 35.78 3.24
1125 1169 7.095060 CCGCGGTAGTTGATACTTAATAGTCTA 60.095 40.741 19.50 0.00 35.78 2.59
1126 1170 7.956403 CGCGGTAGTTGATACTTAATAGTCTAG 59.044 40.741 0.00 0.00 35.78 2.43
1127 1171 8.235905 GCGGTAGTTGATACTTAATAGTCTAGG 58.764 40.741 0.00 0.00 35.78 3.02
1128 1172 8.728833 CGGTAGTTGATACTTAATAGTCTAGGG 58.271 40.741 0.00 0.00 35.78 3.53
1131 1175 8.411991 AGTTGATACTTAATAGTCTAGGGCTC 57.588 38.462 0.00 0.00 35.78 4.70
1132 1176 8.005388 AGTTGATACTTAATAGTCTAGGGCTCA 58.995 37.037 0.00 0.00 35.78 4.26
1140 1189 1.063341 AGTCTAGGGCTCATCTGCTGA 60.063 52.381 0.00 0.00 0.00 4.26
1141 1190 1.969923 GTCTAGGGCTCATCTGCTGAT 59.030 52.381 0.00 0.00 32.10 2.90
1142 1191 2.029110 GTCTAGGGCTCATCTGCTGATC 60.029 54.545 2.65 0.00 32.10 2.92
1144 1193 0.759959 AGGGCTCATCTGCTGATCAG 59.240 55.000 18.84 18.84 44.21 2.90
1158 1207 4.034394 TGCTGATCAGTCGTTATGATTTGC 59.966 41.667 23.38 5.78 37.52 3.68
1170 1219 5.171337 CGTTATGATTTGCCGTTAGAAATGC 59.829 40.000 0.00 0.00 0.00 3.56
1171 1220 4.989279 ATGATTTGCCGTTAGAAATGCT 57.011 36.364 0.00 0.00 0.00 3.79
1185 1234 2.550830 AATGCTATCGGGCGAGAATT 57.449 45.000 0.00 0.00 34.52 2.17
1190 1239 2.868044 GCTATCGGGCGAGAATTGTCAT 60.868 50.000 3.24 0.00 0.00 3.06
1195 1244 1.098050 GGCGAGAATTGTCATGGCTT 58.902 50.000 0.00 0.00 0.00 4.35
1198 1247 3.487544 GGCGAGAATTGTCATGGCTTTAC 60.488 47.826 0.00 0.00 0.00 2.01
1204 1253 2.107950 TGTCATGGCTTTACCTTCCG 57.892 50.000 0.00 0.00 40.22 4.30
1206 1255 2.224670 TGTCATGGCTTTACCTTCCGTT 60.225 45.455 0.00 0.00 40.22 4.44
1207 1256 3.008157 TGTCATGGCTTTACCTTCCGTTA 59.992 43.478 0.00 0.00 40.22 3.18
1208 1257 3.373130 GTCATGGCTTTACCTTCCGTTAC 59.627 47.826 0.00 0.00 40.22 2.50
1209 1258 3.008157 TCATGGCTTTACCTTCCGTTACA 59.992 43.478 0.00 0.00 40.22 2.41
1210 1259 3.488778 TGGCTTTACCTTCCGTTACAA 57.511 42.857 0.00 0.00 40.22 2.41
1212 1261 4.400120 TGGCTTTACCTTCCGTTACAATT 58.600 39.130 0.00 0.00 40.22 2.32
1214 1263 6.002704 TGGCTTTACCTTCCGTTACAATTTA 58.997 36.000 0.00 0.00 40.22 1.40
1215 1264 6.149807 TGGCTTTACCTTCCGTTACAATTTAG 59.850 38.462 0.00 0.00 40.22 1.85
1232 1286 0.397941 TAGGGTATGCTCATGCTGCC 59.602 55.000 0.00 0.00 40.48 4.85
1235 1289 0.879765 GGTATGCTCATGCTGCCATC 59.120 55.000 0.00 0.07 40.48 3.51
1238 1292 2.900838 GCTCATGCTGCCATCGCT 60.901 61.111 0.00 0.00 36.03 4.93
1239 1297 1.596203 GCTCATGCTGCCATCGCTA 60.596 57.895 0.00 0.00 36.03 4.26
1240 1298 1.162181 GCTCATGCTGCCATCGCTAA 61.162 55.000 0.00 0.00 36.03 3.09
1245 1303 3.130869 TCATGCTGCCATCGCTAAATTTT 59.869 39.130 0.00 0.00 35.36 1.82
1246 1304 4.337836 TCATGCTGCCATCGCTAAATTTTA 59.662 37.500 0.00 0.00 35.36 1.52
1247 1305 4.027572 TGCTGCCATCGCTAAATTTTAC 57.972 40.909 0.00 0.00 35.36 2.01
1248 1306 3.441922 TGCTGCCATCGCTAAATTTTACA 59.558 39.130 0.00 0.00 35.36 2.41
1249 1307 4.037690 GCTGCCATCGCTAAATTTTACAG 58.962 43.478 0.00 0.00 35.36 2.74
1250 1308 4.027572 TGCCATCGCTAAATTTTACAGC 57.972 40.909 0.00 0.00 35.36 4.40
1252 1310 3.066760 GCCATCGCTAAATTTTACAGCCT 59.933 43.478 0.00 0.00 31.43 4.58
1254 1312 5.273944 CCATCGCTAAATTTTACAGCCTTC 58.726 41.667 0.00 0.00 31.43 3.46
1255 1313 5.066505 CCATCGCTAAATTTTACAGCCTTCT 59.933 40.000 0.00 0.00 31.43 2.85
1256 1314 6.404734 CCATCGCTAAATTTTACAGCCTTCTT 60.405 38.462 0.00 0.00 31.43 2.52
1257 1315 5.938322 TCGCTAAATTTTACAGCCTTCTTG 58.062 37.500 0.00 0.00 31.43 3.02
1258 1316 4.558860 CGCTAAATTTTACAGCCTTCTTGC 59.441 41.667 0.00 0.00 31.43 4.01
1260 1318 6.159293 GCTAAATTTTACAGCCTTCTTGCTT 58.841 36.000 0.00 0.00 40.32 3.91
1262 1320 7.812669 GCTAAATTTTACAGCCTTCTTGCTTAA 59.187 33.333 0.00 0.00 40.32 1.85
1271 1329 8.388484 ACAGCCTTCTTGCTTAATTATATCTG 57.612 34.615 0.00 0.00 40.32 2.90
1272 1330 7.040823 ACAGCCTTCTTGCTTAATTATATCTGC 60.041 37.037 0.00 0.00 40.32 4.26
1273 1331 6.432472 AGCCTTCTTGCTTAATTATATCTGCC 59.568 38.462 0.00 0.00 38.85 4.85
1274 1332 6.432472 GCCTTCTTGCTTAATTATATCTGCCT 59.568 38.462 0.00 0.00 0.00 4.75
1275 1333 7.574592 GCCTTCTTGCTTAATTATATCTGCCTG 60.575 40.741 0.00 0.00 0.00 4.85
1276 1334 7.446625 CCTTCTTGCTTAATTATATCTGCCTGT 59.553 37.037 0.00 0.00 0.00 4.00
1277 1335 9.494271 CTTCTTGCTTAATTATATCTGCCTGTA 57.506 33.333 0.00 0.00 0.00 2.74
1278 1336 9.845740 TTCTTGCTTAATTATATCTGCCTGTAA 57.154 29.630 0.00 0.00 0.00 2.41
1279 1337 9.845740 TCTTGCTTAATTATATCTGCCTGTAAA 57.154 29.630 0.00 0.00 0.00 2.01
1280 1338 9.884465 CTTGCTTAATTATATCTGCCTGTAAAC 57.116 33.333 0.00 0.00 0.00 2.01
1281 1339 9.627123 TTGCTTAATTATATCTGCCTGTAAACT 57.373 29.630 0.00 0.00 0.00 2.66
1282 1340 9.056005 TGCTTAATTATATCTGCCTGTAAACTG 57.944 33.333 0.00 0.00 0.00 3.16
1283 1341 9.057089 GCTTAATTATATCTGCCTGTAAACTGT 57.943 33.333 0.00 0.00 0.00 3.55
1285 1343 9.899661 TTAATTATATCTGCCTGTAAACTGTGT 57.100 29.630 0.00 0.00 0.00 3.72
1286 1344 7.792374 ATTATATCTGCCTGTAAACTGTGTG 57.208 36.000 0.00 0.00 0.00 3.82
1287 1345 2.254546 TCTGCCTGTAAACTGTGTGG 57.745 50.000 0.00 0.00 0.00 4.17
1288 1346 1.765904 TCTGCCTGTAAACTGTGTGGA 59.234 47.619 0.00 0.00 0.00 4.02
1289 1347 2.371841 TCTGCCTGTAAACTGTGTGGAT 59.628 45.455 0.00 0.00 0.00 3.41
1290 1348 2.485426 CTGCCTGTAAACTGTGTGGATG 59.515 50.000 0.00 0.00 0.00 3.51
1291 1349 1.812571 GCCTGTAAACTGTGTGGATGG 59.187 52.381 0.00 0.00 0.00 3.51
1292 1350 2.552155 GCCTGTAAACTGTGTGGATGGA 60.552 50.000 0.00 0.00 0.00 3.41
1293 1351 3.338249 CCTGTAAACTGTGTGGATGGAG 58.662 50.000 0.00 0.00 0.00 3.86
1294 1352 3.338249 CTGTAAACTGTGTGGATGGAGG 58.662 50.000 0.00 0.00 0.00 4.30
1295 1353 2.039746 TGTAAACTGTGTGGATGGAGGG 59.960 50.000 0.00 0.00 0.00 4.30
1296 1354 0.405585 AAACTGTGTGGATGGAGGGG 59.594 55.000 0.00 0.00 0.00 4.79
1297 1355 0.475632 AACTGTGTGGATGGAGGGGA 60.476 55.000 0.00 0.00 0.00 4.81
1298 1356 0.911525 ACTGTGTGGATGGAGGGGAG 60.912 60.000 0.00 0.00 0.00 4.30
1299 1357 0.911525 CTGTGTGGATGGAGGGGAGT 60.912 60.000 0.00 0.00 0.00 3.85
1300 1358 1.200760 TGTGTGGATGGAGGGGAGTG 61.201 60.000 0.00 0.00 0.00 3.51
1301 1359 1.616327 TGTGGATGGAGGGGAGTGG 60.616 63.158 0.00 0.00 0.00 4.00
1302 1360 2.042762 TGGATGGAGGGGAGTGGG 59.957 66.667 0.00 0.00 0.00 4.61
1303 1361 2.774351 GGATGGAGGGGAGTGGGG 60.774 72.222 0.00 0.00 0.00 4.96
1304 1362 2.774351 GATGGAGGGGAGTGGGGG 60.774 72.222 0.00 0.00 0.00 5.40
1308 1366 2.941583 GAGGGGAGTGGGGGCTTT 60.942 66.667 0.00 0.00 0.00 3.51
1309 1367 2.454511 AGGGGAGTGGGGGCTTTT 60.455 61.111 0.00 0.00 0.00 2.27
1310 1368 1.151452 AGGGGAGTGGGGGCTTTTA 60.151 57.895 0.00 0.00 0.00 1.52
1311 1369 1.000019 GGGGAGTGGGGGCTTTTAC 60.000 63.158 0.00 0.00 0.00 2.01
1312 1370 1.506907 GGGGAGTGGGGGCTTTTACT 61.507 60.000 0.00 0.00 0.00 2.24
1313 1371 0.323451 GGGAGTGGGGGCTTTTACTG 60.323 60.000 0.00 0.00 0.00 2.74
1314 1372 0.696501 GGAGTGGGGGCTTTTACTGA 59.303 55.000 0.00 0.00 0.00 3.41
1318 1376 3.454812 GAGTGGGGGCTTTTACTGAGATA 59.545 47.826 0.00 0.00 0.00 1.98
1322 1380 6.159751 AGTGGGGGCTTTTACTGAGATATAAA 59.840 38.462 0.00 0.00 0.00 1.40
1324 1382 6.831868 TGGGGGCTTTTACTGAGATATAAAAC 59.168 38.462 0.00 0.00 0.00 2.43
1327 1385 7.556635 GGGGCTTTTACTGAGATATAAAACTGT 59.443 37.037 0.00 0.00 0.00 3.55
1351 1412 8.700973 TGTACACATACTATCTTTGCCTGATTA 58.299 33.333 0.00 0.00 32.00 1.75
1352 1413 9.712305 GTACACATACTATCTTTGCCTGATTAT 57.288 33.333 0.00 0.00 0.00 1.28
1355 1416 9.060347 CACATACTATCTTTGCCTGATTATTGT 57.940 33.333 0.00 0.00 0.00 2.71
1356 1417 9.632638 ACATACTATCTTTGCCTGATTATTGTT 57.367 29.630 0.00 0.00 0.00 2.83
1357 1418 9.888878 CATACTATCTTTGCCTGATTATTGTTG 57.111 33.333 0.00 0.00 0.00 3.33
1360 1421 9.632638 ACTATCTTTGCCTGATTATTGTTGTAT 57.367 29.630 0.00 0.00 0.00 2.29
1363 1424 8.121305 TCTTTGCCTGATTATTGTTGTATTGT 57.879 30.769 0.00 0.00 0.00 2.71
1364 1425 8.028354 TCTTTGCCTGATTATTGTTGTATTGTG 58.972 33.333 0.00 0.00 0.00 3.33
1366 1427 7.459795 TGCCTGATTATTGTTGTATTGTGAA 57.540 32.000 0.00 0.00 0.00 3.18
1367 1428 7.537715 TGCCTGATTATTGTTGTATTGTGAAG 58.462 34.615 0.00 0.00 0.00 3.02
1368 1429 6.974622 GCCTGATTATTGTTGTATTGTGAAGG 59.025 38.462 0.00 0.00 0.00 3.46
1378 1439 6.016360 TGTTGTATTGTGAAGGGAAATGTGAG 60.016 38.462 0.00 0.00 0.00 3.51
1380 1441 1.522668 TGTGAAGGGAAATGTGAGCG 58.477 50.000 0.00 0.00 0.00 5.03
1383 1444 0.169009 GAAGGGAAATGTGAGCGTGC 59.831 55.000 0.00 0.00 0.00 5.34
1393 1454 1.535028 TGTGAGCGTGCGATGAAAATT 59.465 42.857 0.00 0.00 0.00 1.82
1394 1455 1.906966 GTGAGCGTGCGATGAAAATTG 59.093 47.619 0.00 0.00 0.00 2.32
1399 1460 2.159572 GCGTGCGATGAAAATTGTAGGT 60.160 45.455 0.00 0.00 0.00 3.08
1400 1461 3.416277 CGTGCGATGAAAATTGTAGGTG 58.584 45.455 0.00 0.00 0.00 4.00
1410 1471 5.008613 TGAAAATTGTAGGTGTCAGAACTGC 59.991 40.000 0.00 0.00 0.00 4.40
1411 1472 4.357918 AATTGTAGGTGTCAGAACTGCT 57.642 40.909 0.00 0.00 0.00 4.24
1412 1473 2.820059 TGTAGGTGTCAGAACTGCTG 57.180 50.000 0.00 0.00 46.31 4.41
1423 1484 3.996921 AGAACTGCTGAGGTTCATGAT 57.003 42.857 0.00 0.00 43.67 2.45
1424 1485 4.298103 AGAACTGCTGAGGTTCATGATT 57.702 40.909 0.00 0.00 43.67 2.57
1425 1486 4.260170 AGAACTGCTGAGGTTCATGATTC 58.740 43.478 0.00 0.00 43.67 2.52
1426 1487 3.708403 ACTGCTGAGGTTCATGATTCA 57.292 42.857 0.00 0.59 0.00 2.57
1427 1488 4.232188 ACTGCTGAGGTTCATGATTCAT 57.768 40.909 0.00 0.00 0.00 2.57
1428 1489 4.197750 ACTGCTGAGGTTCATGATTCATC 58.802 43.478 0.00 1.19 0.00 2.92
1429 1490 4.196971 CTGCTGAGGTTCATGATTCATCA 58.803 43.478 12.67 12.67 41.70 3.07
1430 1491 4.196971 TGCTGAGGTTCATGATTCATCAG 58.803 43.478 25.14 25.14 40.64 2.90
1431 1492 4.197750 GCTGAGGTTCATGATTCATCAGT 58.802 43.478 27.40 1.54 40.54 3.41
1438 1499 7.170965 AGGTTCATGATTCATCAGTAGTTGTT 58.829 34.615 0.00 0.00 40.64 2.83
1460 1521 9.499479 TTGTTGTTTTATTATGCAACATCCATT 57.501 25.926 9.31 0.00 46.67 3.16
1461 1522 9.149225 TGTTGTTTTATTATGCAACATCCATTC 57.851 29.630 5.05 0.00 43.92 2.67
1464 1525 8.031864 TGTTTTATTATGCAACATCCATTCGTT 58.968 29.630 0.00 0.00 0.00 3.85
1466 1527 8.994429 TTTATTATGCAACATCCATTCGTTTT 57.006 26.923 0.00 0.00 0.00 2.43
1478 1539 5.245531 TCCATTCGTTTTAGCTGTTCTGAT 58.754 37.500 0.00 0.00 0.00 2.90
1530 1592 2.564721 GGCTGGTGGGAACTGCAAC 61.565 63.158 0.00 0.00 34.89 4.17
1536 1598 1.076412 TGGGAACTGCAACTTGGCA 60.076 52.632 0.00 0.00 42.53 4.92
1539 1601 1.337167 GGGAACTGCAACTTGGCATTC 60.337 52.381 0.00 0.00 43.97 2.67
1584 1646 1.075482 CTCCACACTGGGGCATGTT 59.925 57.895 0.00 0.00 38.32 2.71
1593 1655 1.225704 GGGGCATGTTGGAGAGGAG 59.774 63.158 0.00 0.00 0.00 3.69
1641 1703 2.159028 GCTCGAGGCAGAAGGAATTAGT 60.159 50.000 15.58 0.00 41.35 2.24
1647 1709 4.327680 AGGCAGAAGGAATTAGTGTTGTC 58.672 43.478 0.00 0.00 0.00 3.18
1686 1748 3.860641 TGATGTTACTGCATGTCGACAT 58.139 40.909 25.18 25.18 37.88 3.06
1728 1790 3.879892 GCTGGGTTCTTGTAGATCCATTC 59.120 47.826 6.23 0.00 36.12 2.67
1731 1793 4.080356 TGGGTTCTTGTAGATCCATTCCAG 60.080 45.833 6.23 0.00 36.12 3.86
1734 1796 5.363939 GTTCTTGTAGATCCATTCCAGAGG 58.636 45.833 0.00 0.00 0.00 3.69
1751 1813 0.106819 AGGCATGGATTCTGCAGGTC 60.107 55.000 15.13 12.34 41.47 3.85
1765 1827 1.446907 CAGGTCAGTTCTCATGCACC 58.553 55.000 0.00 0.00 0.00 5.01
1772 1834 2.092212 CAGTTCTCATGCACCCCCTATT 60.092 50.000 0.00 0.00 0.00 1.73
1804 1868 7.840342 ATAGATTAGCCAATATTCTTGCTCG 57.160 36.000 6.87 0.00 35.34 5.03
1806 1870 6.759272 AGATTAGCCAATATTCTTGCTCGTA 58.241 36.000 6.87 0.00 35.34 3.43
1814 1878 7.746475 GCCAATATTCTTGCTCGTATGATTTAC 59.254 37.037 0.00 0.00 0.00 2.01
1816 1880 8.487970 CAATATTCTTGCTCGTATGATTTACGT 58.512 33.333 0.00 0.00 41.25 3.57
1818 1882 4.740268 TCTTGCTCGTATGATTTACGTGT 58.260 39.130 0.00 0.00 41.25 4.49
1819 1883 5.165676 TCTTGCTCGTATGATTTACGTGTT 58.834 37.500 0.00 0.00 41.25 3.32
1820 1884 5.636121 TCTTGCTCGTATGATTTACGTGTTT 59.364 36.000 0.00 0.00 41.25 2.83
1821 1885 5.849357 TGCTCGTATGATTTACGTGTTTT 57.151 34.783 0.00 0.00 41.25 2.43
1822 1886 6.230849 TGCTCGTATGATTTACGTGTTTTT 57.769 33.333 0.00 0.00 41.25 1.94
1850 1914 8.794335 ACTTCATATTTACTGGTCTTTCCTTC 57.206 34.615 0.00 0.00 37.07 3.46
1851 1915 8.606830 ACTTCATATTTACTGGTCTTTCCTTCT 58.393 33.333 0.00 0.00 37.07 2.85
1858 1922 4.023291 ACTGGTCTTTCCTTCTTTGCAAA 58.977 39.130 12.14 12.14 37.07 3.68
1999 2063 5.595542 TGATGAATTTTCCCCTGATGTGATC 59.404 40.000 0.00 0.00 0.00 2.92
2068 2132 4.101448 CCTGGGCCTCGTGGAAGG 62.101 72.222 7.92 6.81 39.62 3.46
2104 2168 0.534412 ACCTGGATGAACAGAGAGCG 59.466 55.000 0.00 0.00 40.97 5.03
2107 2171 0.610174 TGGATGAACAGAGAGCGCTT 59.390 50.000 13.26 0.58 0.00 4.68
2147 2211 1.128692 GCGATGTTCTCCTTTTGACGG 59.871 52.381 0.00 0.00 0.00 4.79
2171 2235 5.455326 GCAGATGAGGTTAGTTCACCCATAT 60.455 44.000 0.00 0.00 37.58 1.78
2193 2257 2.806945 TAAGCCCTGAAGTTGGATGG 57.193 50.000 0.00 0.00 0.00 3.51
2209 2273 2.629617 GGATGGGTTTGCAGGATTATGG 59.370 50.000 0.00 0.00 0.00 2.74
2242 2306 5.920193 ATTTGGTTATGTATGCTGCTTGT 57.080 34.783 0.00 0.00 0.00 3.16
2247 2311 1.536940 ATGTATGCTGCTTGTGCACA 58.463 45.000 17.42 17.42 45.31 4.57
2249 2313 0.453282 GTATGCTGCTTGTGCACACG 60.453 55.000 21.56 19.79 45.31 4.49
2250 2314 1.576451 TATGCTGCTTGTGCACACGG 61.576 55.000 21.56 15.37 45.31 4.94
2257 2321 2.675844 TGCTTGTGCACACGGTTATATC 59.324 45.455 21.56 3.45 45.31 1.63
2271 2335 5.733620 GGTTATATCCGAGTTATCACCCA 57.266 43.478 0.00 0.00 0.00 4.51
2276 2340 9.715121 GTTATATCCGAGTTATCACCCATTTTA 57.285 33.333 0.00 0.00 0.00 1.52
2292 2356 7.489113 CACCCATTTTATATTCAAGTTCTGTGC 59.511 37.037 0.00 0.00 0.00 4.57
2319 2391 4.040936 TGGCTGCCTTCATAAACCTTTA 57.959 40.909 21.03 0.00 0.00 1.85
2321 2393 4.644685 TGGCTGCCTTCATAAACCTTTATC 59.355 41.667 21.03 0.00 31.28 1.75
2328 2400 7.121168 TGCCTTCATAAACCTTTATCACTGAAG 59.879 37.037 9.79 9.79 36.61 3.02
2329 2401 7.475840 CCTTCATAAACCTTTATCACTGAAGC 58.524 38.462 10.67 0.00 36.10 3.86
2330 2402 7.121168 CCTTCATAAACCTTTATCACTGAAGCA 59.879 37.037 10.67 0.00 36.10 3.91
2397 2470 6.862608 CAGAAGAGCGATCATATATATCCAGC 59.137 42.308 2.38 0.00 0.00 4.85
2437 2510 4.768448 AGTCACATTCATTTGCTTGATGGA 59.232 37.500 0.00 0.00 0.00 3.41
2464 2537 8.925161 TTCTCTGGTAAAAACAAATCAAACAG 57.075 30.769 0.00 0.00 0.00 3.16
2488 2561 5.521372 GCATATGTTCCAGATTCCTTTTTGC 59.479 40.000 4.29 0.00 0.00 3.68
2506 2582 2.416747 TGCGTTCACTCTTCCAGATTG 58.583 47.619 0.00 0.00 0.00 2.67
2559 2639 7.510685 ACTGTCAATGATCAGTACTATATGGGT 59.489 37.037 13.88 0.00 42.13 4.51
2587 2667 5.391629 GCCTATCTTTCCAACGAAAACGATT 60.392 40.000 0.00 0.00 37.53 3.34
2626 2706 8.866956 CATTGAACTTTTCTCTGAATATTTGCC 58.133 33.333 0.00 0.00 0.00 4.52
2718 2801 6.455360 AACATCAACTGCTTTTCTGAAGAA 57.545 33.333 0.00 0.00 0.00 2.52
2757 2840 0.107945 CCTGGCTTAGAGGACAGTGC 60.108 60.000 0.00 0.00 40.53 4.40
2788 2871 7.905493 GTGTGCTGTACTTATTCTAGCATTTTC 59.095 37.037 5.25 0.00 44.98 2.29
2805 2888 2.386661 TTCTCGCCTCATTTCTCACC 57.613 50.000 0.00 0.00 0.00 4.02
2806 2889 1.266178 TCTCGCCTCATTTCTCACCA 58.734 50.000 0.00 0.00 0.00 4.17
2807 2890 1.066858 TCTCGCCTCATTTCTCACCAC 60.067 52.381 0.00 0.00 0.00 4.16
2898 2981 0.902531 TGCTAAGAAGAGGAACCCGG 59.097 55.000 0.00 0.00 0.00 5.73
2941 3024 4.731313 ATGGGTTCTAAGGGATCAATCC 57.269 45.455 0.01 0.01 46.41 3.01
2955 3038 2.632377 TCAATCCTGATCACCGAAAGC 58.368 47.619 0.00 0.00 0.00 3.51
3013 3096 3.006430 TGTGCTGACGAAGGATCTTTGTA 59.994 43.478 0.00 0.00 0.00 2.41
3043 3126 7.731054 TGGCACAAGTAATGGAAGTTATTTTT 58.269 30.769 0.00 0.00 31.92 1.94
3164 3247 3.540367 TTTCGGGTTCCTCCACGGC 62.540 63.158 0.00 0.00 38.11 5.68
3168 3251 2.430367 GGTTCCTCCACGGCTTGT 59.570 61.111 0.00 0.00 35.97 3.16
3203 3286 5.289675 CACACTAGTACTAGCAAATGCAGTC 59.710 44.000 26.54 4.49 45.16 3.51
3236 3319 1.748122 CACTGGATGTGGAGCAGGC 60.748 63.158 0.00 0.00 42.68 4.85
3314 3397 3.181443 ACGAGGAAGGAAAAACATGGACT 60.181 43.478 0.00 0.00 0.00 3.85
3321 3404 3.891366 AGGAAAAACATGGACTGAGTTGG 59.109 43.478 0.00 0.00 0.00 3.77
3337 3420 2.107204 AGTTGGTTGAAGGATGCTCAGT 59.893 45.455 0.00 0.00 0.00 3.41
3389 3472 2.430465 CCAGTCAATGGTTCCAGTGAG 58.570 52.381 19.88 10.79 44.91 3.51
3481 3564 2.281761 AAGCACCGTCCAGGCTTG 60.282 61.111 0.00 0.00 45.44 4.01
3512 3595 9.102757 CATGCTGAGTAGTAGATTGTTGTATTT 57.897 33.333 0.00 0.00 0.00 1.40
3735 3824 2.290323 CCCCCTTTCTTCGTGTGATCTT 60.290 50.000 0.00 0.00 0.00 2.40
3792 3882 6.319658 CCCTAACTACGGTTATGTCTCAGTTA 59.680 42.308 0.00 0.00 37.30 2.24
3793 3883 7.192232 CCTAACTACGGTTATGTCTCAGTTAC 58.808 42.308 0.00 0.00 37.30 2.50
3807 4144 2.829120 TCAGTTACGATGACACCATGGA 59.171 45.455 21.47 0.00 33.43 3.41
3857 4208 3.063997 CAGTGATGACGAACCCTAAATGC 59.936 47.826 0.00 0.00 0.00 3.56
3893 4244 1.068287 GCTGTCGACTCGTCTGAAGC 61.068 60.000 17.92 10.68 0.00 3.86
3894 4245 0.519519 CTGTCGACTCGTCTGAAGCT 59.480 55.000 17.92 0.00 0.00 3.74
3896 4247 1.332178 GTCGACTCGTCTGAAGCTTG 58.668 55.000 2.10 0.00 0.00 4.01
3898 4249 1.347817 CGACTCGTCTGAAGCTTGCC 61.348 60.000 2.10 0.00 0.00 4.52
3900 4251 1.743252 CTCGTCTGAAGCTTGCCCC 60.743 63.158 2.10 0.00 0.00 5.80
3901 4252 2.747855 CGTCTGAAGCTTGCCCCC 60.748 66.667 2.10 0.00 0.00 5.40
3916 4267 4.308458 CCCCTTGTCGCGGTGTGA 62.308 66.667 6.13 0.00 0.00 3.58
3917 4268 3.041940 CCCTTGTCGCGGTGTGAC 61.042 66.667 6.13 3.64 42.60 3.67
3918 4269 3.403057 CCTTGTCGCGGTGTGACG 61.403 66.667 6.13 0.00 44.86 4.35
3919 4270 2.354188 CTTGTCGCGGTGTGACGA 60.354 61.111 6.13 3.50 44.86 4.20
3920 4271 1.733041 CTTGTCGCGGTGTGACGAT 60.733 57.895 6.13 0.00 44.86 3.73
3921 4272 1.944699 CTTGTCGCGGTGTGACGATG 61.945 60.000 6.13 0.00 44.86 3.84
3922 4273 2.126618 GTCGCGGTGTGACGATGA 60.127 61.111 6.13 0.00 40.90 2.92
3923 4274 2.152699 GTCGCGGTGTGACGATGAG 61.153 63.158 6.13 0.00 40.90 2.90
3924 4275 2.880879 CGCGGTGTGACGATGAGG 60.881 66.667 0.00 0.00 35.47 3.86
3925 4276 2.509336 GCGGTGTGACGATGAGGG 60.509 66.667 0.00 0.00 35.47 4.30
3926 4277 2.184322 CGGTGTGACGATGAGGGG 59.816 66.667 0.00 0.00 35.47 4.79
3927 4278 2.348104 CGGTGTGACGATGAGGGGA 61.348 63.158 0.00 0.00 35.47 4.81
3928 4279 1.884075 CGGTGTGACGATGAGGGGAA 61.884 60.000 0.00 0.00 35.47 3.97
3929 4280 0.391263 GGTGTGACGATGAGGGGAAC 60.391 60.000 0.00 0.00 0.00 3.62
3930 4281 0.320374 GTGTGACGATGAGGGGAACA 59.680 55.000 0.00 0.00 0.00 3.18
3931 4282 1.052617 TGTGACGATGAGGGGAACAA 58.947 50.000 0.00 0.00 0.00 2.83
3932 4283 1.001974 TGTGACGATGAGGGGAACAAG 59.998 52.381 0.00 0.00 0.00 3.16
3933 4284 1.275291 GTGACGATGAGGGGAACAAGA 59.725 52.381 0.00 0.00 0.00 3.02
3934 4285 2.093447 GTGACGATGAGGGGAACAAGAT 60.093 50.000 0.00 0.00 0.00 2.40
3935 4286 2.093500 TGACGATGAGGGGAACAAGATG 60.093 50.000 0.00 0.00 0.00 2.90
3936 4287 2.168521 GACGATGAGGGGAACAAGATGA 59.831 50.000 0.00 0.00 0.00 2.92
3937 4288 2.571653 ACGATGAGGGGAACAAGATGAA 59.428 45.455 0.00 0.00 0.00 2.57
3938 4289 2.939103 CGATGAGGGGAACAAGATGAAC 59.061 50.000 0.00 0.00 0.00 3.18
3939 4290 3.369892 CGATGAGGGGAACAAGATGAACT 60.370 47.826 0.00 0.00 0.00 3.01
3940 4291 4.593956 GATGAGGGGAACAAGATGAACTT 58.406 43.478 0.00 0.00 39.70 2.66
3941 4292 4.021102 TGAGGGGAACAAGATGAACTTC 57.979 45.455 0.00 0.00 36.61 3.01
3942 4293 3.394274 TGAGGGGAACAAGATGAACTTCA 59.606 43.478 0.00 0.00 36.61 3.02
3943 4294 4.141274 TGAGGGGAACAAGATGAACTTCAA 60.141 41.667 0.00 0.00 36.61 2.69
3944 4295 4.145052 AGGGGAACAAGATGAACTTCAAC 58.855 43.478 0.00 0.00 36.61 3.18
3945 4296 4.141158 AGGGGAACAAGATGAACTTCAACT 60.141 41.667 0.00 0.00 36.61 3.16
3946 4297 4.022849 GGGGAACAAGATGAACTTCAACTG 60.023 45.833 2.53 0.69 36.61 3.16
3947 4298 4.022849 GGGAACAAGATGAACTTCAACTGG 60.023 45.833 2.53 2.55 36.61 4.00
3948 4299 4.022849 GGAACAAGATGAACTTCAACTGGG 60.023 45.833 8.02 4.61 36.61 4.45
3949 4300 4.170468 ACAAGATGAACTTCAACTGGGT 57.830 40.909 8.02 5.11 36.61 4.51
3950 4301 3.885297 ACAAGATGAACTTCAACTGGGTG 59.115 43.478 8.02 3.90 36.61 4.61
4017 4368 1.915078 CTGAAATCCGAGGCCCTGGT 61.915 60.000 10.50 0.00 0.00 4.00
4058 4409 2.671963 GCTGTCAACCCGGGGAAC 60.672 66.667 27.92 19.56 0.00 3.62
4089 4440 1.005557 CGCTCGTGCTATTTTCTGCTC 60.006 52.381 7.97 0.00 36.97 4.26
4090 4441 1.328986 GCTCGTGCTATTTTCTGCTCC 59.671 52.381 1.41 0.00 36.03 4.70
4094 4445 2.096496 CGTGCTATTTTCTGCTCCAAGG 59.904 50.000 0.00 0.00 0.00 3.61
4121 4472 1.754226 CACTTCTCCTCCAGCCTAGTC 59.246 57.143 0.00 0.00 0.00 2.59
4154 4505 0.247736 CTTCTCCTGTTCCCCAGTCG 59.752 60.000 0.00 0.00 39.74 4.18
4160 4511 3.692406 GTTCCCCAGTCGCCTCGT 61.692 66.667 0.00 0.00 0.00 4.18
4202 4558 1.204704 GTATCCCAGGTTTTGCAAGGC 59.795 52.381 0.00 0.00 0.00 4.35
4208 4564 0.396974 AGGTTTTGCAAGGCCACAGA 60.397 50.000 19.23 0.00 0.00 3.41
4221 4577 1.804372 GCCACAGAGAGATTACTGCCG 60.804 57.143 0.00 0.00 37.61 5.69
4243 4599 0.984230 CTTCCCAACTGGAGGCACTA 59.016 55.000 0.00 0.00 46.24 2.74
4406 4762 2.254546 TCGACACTGCTGGAACAATT 57.745 45.000 0.00 0.00 38.70 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.586664 GGAAATTTACGAATAAAGCGAAGGATC 59.413 37.037 0.00 0.00 33.78 3.36
1 2 7.415229 GGAAATTTACGAATAAAGCGAAGGAT 58.585 34.615 0.00 0.00 33.78 3.24
2 3 6.455913 CGGAAATTTACGAATAAAGCGAAGGA 60.456 38.462 18.17 0.00 36.35 3.36
3 4 5.675444 CGGAAATTTACGAATAAAGCGAAGG 59.325 40.000 18.17 0.00 36.35 3.46
4 5 6.245724 ACGGAAATTTACGAATAAAGCGAAG 58.754 36.000 28.90 0.00 38.08 3.79
5 6 6.128607 TGACGGAAATTTACGAATAAAGCGAA 60.129 34.615 28.90 0.00 38.08 4.70
6 7 5.348179 TGACGGAAATTTACGAATAAAGCGA 59.652 36.000 28.90 0.00 38.08 4.93
7 8 5.552807 TGACGGAAATTTACGAATAAAGCG 58.447 37.500 28.90 0.00 38.08 4.68
8 9 6.768078 TCTGACGGAAATTTACGAATAAAGC 58.232 36.000 28.90 9.17 38.08 3.51
9 10 9.769093 AATTCTGACGGAAATTTACGAATAAAG 57.231 29.630 28.90 16.40 38.08 1.85
14 15 9.549509 CATTAAATTCTGACGGAAATTTACGAA 57.450 29.630 28.90 13.02 38.08 3.85
15 16 7.694784 GCATTAAATTCTGACGGAAATTTACGA 59.305 33.333 28.90 6.71 38.08 3.43
16 17 7.696453 AGCATTAAATTCTGACGGAAATTTACG 59.304 33.333 21.15 21.15 41.22 3.18
17 18 8.911247 AGCATTAAATTCTGACGGAAATTTAC 57.089 30.769 0.00 0.00 37.49 2.01
18 19 8.956426 AGAGCATTAAATTCTGACGGAAATTTA 58.044 29.630 0.00 4.63 37.49 1.40
19 20 7.830739 AGAGCATTAAATTCTGACGGAAATTT 58.169 30.769 0.00 5.48 37.49 1.82
20 21 7.396540 AGAGCATTAAATTCTGACGGAAATT 57.603 32.000 0.00 1.54 37.49 1.82
21 22 7.121168 TGAAGAGCATTAAATTCTGACGGAAAT 59.879 33.333 0.00 0.00 37.49 2.17
22 23 6.429692 TGAAGAGCATTAAATTCTGACGGAAA 59.570 34.615 0.00 0.00 37.49 3.13
23 24 5.937540 TGAAGAGCATTAAATTCTGACGGAA 59.062 36.000 0.00 0.00 38.41 4.30
24 25 5.351465 GTGAAGAGCATTAAATTCTGACGGA 59.649 40.000 0.00 0.00 0.00 4.69
25 26 5.352569 AGTGAAGAGCATTAAATTCTGACGG 59.647 40.000 0.00 0.00 0.00 4.79
26 27 6.414408 AGTGAAGAGCATTAAATTCTGACG 57.586 37.500 0.00 0.00 0.00 4.35
27 28 6.372659 TGGAGTGAAGAGCATTAAATTCTGAC 59.627 38.462 0.00 0.00 0.00 3.51
28 29 6.372659 GTGGAGTGAAGAGCATTAAATTCTGA 59.627 38.462 0.00 0.00 0.00 3.27
29 30 6.404074 GGTGGAGTGAAGAGCATTAAATTCTG 60.404 42.308 0.00 0.00 0.00 3.02
30 31 5.649831 GGTGGAGTGAAGAGCATTAAATTCT 59.350 40.000 0.00 0.00 0.00 2.40
31 32 5.415701 TGGTGGAGTGAAGAGCATTAAATTC 59.584 40.000 0.00 0.00 0.00 2.17
32 33 5.183904 GTGGTGGAGTGAAGAGCATTAAATT 59.816 40.000 0.00 0.00 0.00 1.82
33 34 4.702131 GTGGTGGAGTGAAGAGCATTAAAT 59.298 41.667 0.00 0.00 0.00 1.40
34 35 4.072131 GTGGTGGAGTGAAGAGCATTAAA 58.928 43.478 0.00 0.00 0.00 1.52
35 36 3.072330 TGTGGTGGAGTGAAGAGCATTAA 59.928 43.478 0.00 0.00 0.00 1.40
36 37 2.637382 TGTGGTGGAGTGAAGAGCATTA 59.363 45.455 0.00 0.00 0.00 1.90
37 38 1.421268 TGTGGTGGAGTGAAGAGCATT 59.579 47.619 0.00 0.00 0.00 3.56
38 39 1.059098 TGTGGTGGAGTGAAGAGCAT 58.941 50.000 0.00 0.00 0.00 3.79
39 40 0.836606 TTGTGGTGGAGTGAAGAGCA 59.163 50.000 0.00 0.00 0.00 4.26
40 41 2.191128 ATTGTGGTGGAGTGAAGAGC 57.809 50.000 0.00 0.00 0.00 4.09
41 42 4.339247 ACAAAATTGTGGTGGAGTGAAGAG 59.661 41.667 0.00 0.00 40.49 2.85
42 43 4.277476 ACAAAATTGTGGTGGAGTGAAGA 58.723 39.130 0.00 0.00 40.49 2.87
43 44 4.654091 ACAAAATTGTGGTGGAGTGAAG 57.346 40.909 0.00 0.00 40.49 3.02
44 45 5.413309 AAACAAAATTGTGGTGGAGTGAA 57.587 34.783 0.00 0.00 41.31 3.18
45 46 5.186797 AGAAAACAAAATTGTGGTGGAGTGA 59.813 36.000 0.00 0.00 41.31 3.41
46 47 5.418676 AGAAAACAAAATTGTGGTGGAGTG 58.581 37.500 0.00 0.00 41.31 3.51
47 48 5.675684 AGAAAACAAAATTGTGGTGGAGT 57.324 34.783 0.00 0.00 41.31 3.85
48 49 6.340522 AGAAGAAAACAAAATTGTGGTGGAG 58.659 36.000 0.00 0.00 41.31 3.86
49 50 6.293004 AGAAGAAAACAAAATTGTGGTGGA 57.707 33.333 0.00 0.00 41.31 4.02
50 51 6.037062 GGAAGAAGAAAACAAAATTGTGGTGG 59.963 38.462 0.00 0.00 41.31 4.61
51 52 6.593382 TGGAAGAAGAAAACAAAATTGTGGTG 59.407 34.615 0.00 0.00 41.31 4.17
52 53 6.593770 GTGGAAGAAGAAAACAAAATTGTGGT 59.406 34.615 0.00 0.00 41.31 4.16
53 54 6.037062 GGTGGAAGAAGAAAACAAAATTGTGG 59.963 38.462 0.00 0.00 41.31 4.17
54 55 6.818142 AGGTGGAAGAAGAAAACAAAATTGTG 59.182 34.615 0.00 0.00 41.31 3.33
60 61 5.946972 TGTACAGGTGGAAGAAGAAAACAAA 59.053 36.000 0.00 0.00 0.00 2.83
75 76 3.463944 ACTCGGAAAACTTGTACAGGTG 58.536 45.455 11.83 0.00 0.00 4.00
77 78 3.303791 GCAACTCGGAAAACTTGTACAGG 60.304 47.826 2.98 2.98 0.00 4.00
78 79 3.560068 AGCAACTCGGAAAACTTGTACAG 59.440 43.478 0.00 0.00 0.00 2.74
80 81 3.558418 TCAGCAACTCGGAAAACTTGTAC 59.442 43.478 0.00 0.00 0.00 2.90
92 97 2.938451 TGCAATATTCCTCAGCAACTCG 59.062 45.455 0.00 0.00 31.42 4.18
99 104 4.978083 AAGCAGTTGCAATATTCCTCAG 57.022 40.909 0.59 0.00 45.16 3.35
105 110 6.460123 CGATTAGGGAAAGCAGTTGCAATATT 60.460 38.462 0.59 0.00 45.16 1.28
159 164 0.677731 AGTTGCATCATCGGTGTGGG 60.678 55.000 0.00 0.00 0.00 4.61
166 171 1.530441 CGGCTCAAAGTTGCATCATCG 60.530 52.381 0.00 0.00 0.00 3.84
167 172 1.470098 ACGGCTCAAAGTTGCATCATC 59.530 47.619 0.00 0.00 0.00 2.92
168 173 1.538047 ACGGCTCAAAGTTGCATCAT 58.462 45.000 0.00 0.00 0.00 2.45
195 200 3.200887 GAGAGGGATGCGATCGCGT 62.201 63.158 33.47 33.47 45.80 6.01
197 202 1.080839 GAGAGAGGGATGCGATCGC 60.081 63.158 32.48 32.48 42.02 4.58
208 213 0.823460 GGAAGGTGAGCTGAGAGAGG 59.177 60.000 0.00 0.00 0.00 3.69
899 934 1.941734 GCGAGATCCGTCTGCTTCG 60.942 63.158 5.66 0.00 41.15 3.79
904 939 2.278206 CGTGGCGAGATCCGTCTG 60.278 66.667 9.13 0.05 44.53 3.51
1069 1104 1.270893 GGGGCGAATACAGAGGATTCC 60.271 57.143 0.00 0.00 30.83 3.01
1073 1108 0.559205 TAGGGGGCGAATACAGAGGA 59.441 55.000 0.00 0.00 0.00 3.71
1091 1135 1.612950 TCAACTACCGCGGAACAGTTA 59.387 47.619 35.90 19.78 30.31 2.24
1094 1138 2.159282 AGTATCAACTACCGCGGAACAG 60.159 50.000 35.90 25.92 32.84 3.16
1100 1144 6.666417 AGACTATTAAGTATCAACTACCGCG 58.334 40.000 0.00 0.00 35.56 6.46
1103 1147 8.522003 GCCCTAGACTATTAAGTATCAACTACC 58.478 40.741 0.00 0.00 35.56 3.18
1105 1149 9.517868 GAGCCCTAGACTATTAAGTATCAACTA 57.482 37.037 0.00 0.00 35.56 2.24
1106 1150 8.005388 TGAGCCCTAGACTATTAAGTATCAACT 58.995 37.037 0.00 0.00 35.56 3.16
1110 1154 8.682710 CAGATGAGCCCTAGACTATTAAGTATC 58.317 40.741 0.00 0.00 35.56 2.24
1114 1158 5.480073 AGCAGATGAGCCCTAGACTATTAAG 59.520 44.000 0.00 0.00 34.23 1.85
1117 1161 3.577848 CAGCAGATGAGCCCTAGACTATT 59.422 47.826 0.00 0.00 34.23 1.73
1120 1164 1.063341 TCAGCAGATGAGCCCTAGACT 60.063 52.381 0.00 0.00 32.77 3.24
1122 1166 2.246469 GATCAGCAGATGAGCCCTAGA 58.754 52.381 0.00 0.00 42.53 2.43
1123 1167 1.969208 TGATCAGCAGATGAGCCCTAG 59.031 52.381 0.59 0.00 43.96 3.02
1124 1168 2.092598 TGATCAGCAGATGAGCCCTA 57.907 50.000 0.59 0.00 43.96 3.53
1125 1169 2.926539 TGATCAGCAGATGAGCCCT 58.073 52.632 0.59 0.00 43.96 5.19
1140 1189 3.531538 ACGGCAAATCATAACGACTGAT 58.468 40.909 0.00 0.00 34.86 2.90
1141 1190 2.967362 ACGGCAAATCATAACGACTGA 58.033 42.857 0.00 0.00 0.00 3.41
1142 1191 3.740044 AACGGCAAATCATAACGACTG 57.260 42.857 0.00 0.00 0.00 3.51
1144 1193 5.459110 TTCTAACGGCAAATCATAACGAC 57.541 39.130 0.00 0.00 0.00 4.34
1170 1219 2.509052 TGACAATTCTCGCCCGATAG 57.491 50.000 0.00 0.00 0.00 2.08
1171 1220 2.547855 CCATGACAATTCTCGCCCGATA 60.548 50.000 0.00 0.00 0.00 2.92
1185 1234 1.349688 ACGGAAGGTAAAGCCATGACA 59.650 47.619 0.00 0.00 40.61 3.58
1190 1239 3.488778 TTGTAACGGAAGGTAAAGCCA 57.511 42.857 0.00 0.00 40.61 4.75
1195 1244 6.125589 ACCCTAAATTGTAACGGAAGGTAA 57.874 37.500 0.00 0.00 33.30 2.85
1198 1247 5.008316 GCATACCCTAAATTGTAACGGAAGG 59.992 44.000 0.00 0.00 0.00 3.46
1204 1253 6.263168 AGCATGAGCATACCCTAAATTGTAAC 59.737 38.462 0.00 0.00 45.49 2.50
1206 1255 5.764686 CAGCATGAGCATACCCTAAATTGTA 59.235 40.000 0.00 0.00 45.49 2.41
1207 1256 4.581824 CAGCATGAGCATACCCTAAATTGT 59.418 41.667 0.00 0.00 45.49 2.71
1208 1257 4.558095 GCAGCATGAGCATACCCTAAATTG 60.558 45.833 0.00 0.00 45.49 2.32
1209 1258 3.571401 GCAGCATGAGCATACCCTAAATT 59.429 43.478 0.00 0.00 45.49 1.82
1210 1259 3.152341 GCAGCATGAGCATACCCTAAAT 58.848 45.455 0.00 0.00 45.49 1.40
1212 1261 1.202806 GGCAGCATGAGCATACCCTAA 60.203 52.381 11.88 0.00 45.49 2.69
1214 1263 1.150081 GGCAGCATGAGCATACCCT 59.850 57.895 11.88 0.00 45.49 4.34
1215 1264 0.538977 ATGGCAGCATGAGCATACCC 60.539 55.000 11.88 0.00 45.49 3.69
1232 1286 6.124088 AGAAGGCTGTAAAATTTAGCGATG 57.876 37.500 5.56 0.00 38.31 3.84
1235 1289 4.558860 GCAAGAAGGCTGTAAAATTTAGCG 59.441 41.667 5.56 0.00 38.31 4.26
1245 1303 9.494271 CAGATATAATTAAGCAAGAAGGCTGTA 57.506 33.333 0.00 0.00 45.07 2.74
1246 1304 7.040823 GCAGATATAATTAAGCAAGAAGGCTGT 60.041 37.037 0.00 0.00 45.07 4.40
1247 1305 7.303998 GCAGATATAATTAAGCAAGAAGGCTG 58.696 38.462 0.00 0.00 45.07 4.85
1249 1307 6.432472 AGGCAGATATAATTAAGCAAGAAGGC 59.568 38.462 0.00 0.00 0.00 4.35
1250 1308 7.446625 ACAGGCAGATATAATTAAGCAAGAAGG 59.553 37.037 0.00 0.00 0.00 3.46
1252 1310 9.845740 TTACAGGCAGATATAATTAAGCAAGAA 57.154 29.630 0.00 0.00 0.00 2.52
1254 1312 9.884465 GTTTACAGGCAGATATAATTAAGCAAG 57.116 33.333 0.00 0.00 0.00 4.01
1255 1313 9.627123 AGTTTACAGGCAGATATAATTAAGCAA 57.373 29.630 0.00 0.00 0.00 3.91
1256 1314 9.056005 CAGTTTACAGGCAGATATAATTAAGCA 57.944 33.333 0.00 0.00 0.00 3.91
1257 1315 9.057089 ACAGTTTACAGGCAGATATAATTAAGC 57.943 33.333 0.00 0.00 0.00 3.09
1260 1318 9.325198 CACACAGTTTACAGGCAGATATAATTA 57.675 33.333 0.00 0.00 0.00 1.40
1262 1320 6.767902 CCACACAGTTTACAGGCAGATATAAT 59.232 38.462 0.00 0.00 0.00 1.28
1264 1322 5.423931 TCCACACAGTTTACAGGCAGATATA 59.576 40.000 0.00 0.00 0.00 0.86
1265 1323 4.225042 TCCACACAGTTTACAGGCAGATAT 59.775 41.667 0.00 0.00 0.00 1.63
1267 1325 2.371841 TCCACACAGTTTACAGGCAGAT 59.628 45.455 0.00 0.00 0.00 2.90
1268 1326 1.765904 TCCACACAGTTTACAGGCAGA 59.234 47.619 0.00 0.00 0.00 4.26
1269 1327 2.254546 TCCACACAGTTTACAGGCAG 57.745 50.000 0.00 0.00 0.00 4.85
1270 1328 2.503331 CATCCACACAGTTTACAGGCA 58.497 47.619 0.00 0.00 0.00 4.75
1271 1329 1.812571 CCATCCACACAGTTTACAGGC 59.187 52.381 0.00 0.00 0.00 4.85
1272 1330 3.338249 CTCCATCCACACAGTTTACAGG 58.662 50.000 0.00 0.00 0.00 4.00
1273 1331 3.338249 CCTCCATCCACACAGTTTACAG 58.662 50.000 0.00 0.00 0.00 2.74
1274 1332 2.039746 CCCTCCATCCACACAGTTTACA 59.960 50.000 0.00 0.00 0.00 2.41
1275 1333 2.618045 CCCCTCCATCCACACAGTTTAC 60.618 54.545 0.00 0.00 0.00 2.01
1276 1334 1.633432 CCCCTCCATCCACACAGTTTA 59.367 52.381 0.00 0.00 0.00 2.01
1277 1335 0.405585 CCCCTCCATCCACACAGTTT 59.594 55.000 0.00 0.00 0.00 2.66
1278 1336 0.475632 TCCCCTCCATCCACACAGTT 60.476 55.000 0.00 0.00 0.00 3.16
1279 1337 0.911525 CTCCCCTCCATCCACACAGT 60.912 60.000 0.00 0.00 0.00 3.55
1280 1338 0.911525 ACTCCCCTCCATCCACACAG 60.912 60.000 0.00 0.00 0.00 3.66
1281 1339 1.160870 ACTCCCCTCCATCCACACA 59.839 57.895 0.00 0.00 0.00 3.72
1282 1340 1.604378 CACTCCCCTCCATCCACAC 59.396 63.158 0.00 0.00 0.00 3.82
1283 1341 1.616327 CCACTCCCCTCCATCCACA 60.616 63.158 0.00 0.00 0.00 4.17
1284 1342 2.378634 CCCACTCCCCTCCATCCAC 61.379 68.421 0.00 0.00 0.00 4.02
1285 1343 2.042762 CCCACTCCCCTCCATCCA 59.957 66.667 0.00 0.00 0.00 3.41
1286 1344 2.774351 CCCCACTCCCCTCCATCC 60.774 72.222 0.00 0.00 0.00 3.51
1287 1345 2.774351 CCCCCACTCCCCTCCATC 60.774 72.222 0.00 0.00 0.00 3.51
1291 1349 1.212250 TAAAAGCCCCCACTCCCCTC 61.212 60.000 0.00 0.00 0.00 4.30
1292 1350 1.151452 TAAAAGCCCCCACTCCCCT 60.151 57.895 0.00 0.00 0.00 4.79
1293 1351 1.000019 GTAAAAGCCCCCACTCCCC 60.000 63.158 0.00 0.00 0.00 4.81
1294 1352 0.323451 CAGTAAAAGCCCCCACTCCC 60.323 60.000 0.00 0.00 0.00 4.30
1295 1353 0.696501 TCAGTAAAAGCCCCCACTCC 59.303 55.000 0.00 0.00 0.00 3.85
1296 1354 1.628846 TCTCAGTAAAAGCCCCCACTC 59.371 52.381 0.00 0.00 0.00 3.51
1297 1355 1.742308 TCTCAGTAAAAGCCCCCACT 58.258 50.000 0.00 0.00 0.00 4.00
1298 1356 2.808906 ATCTCAGTAAAAGCCCCCAC 57.191 50.000 0.00 0.00 0.00 4.61
1299 1357 6.584471 TTTATATCTCAGTAAAAGCCCCCA 57.416 37.500 0.00 0.00 0.00 4.96
1300 1358 7.013369 CAGTTTTATATCTCAGTAAAAGCCCCC 59.987 40.741 0.00 0.00 32.29 5.40
1301 1359 7.556635 ACAGTTTTATATCTCAGTAAAAGCCCC 59.443 37.037 0.00 0.00 32.29 5.80
1302 1360 8.507524 ACAGTTTTATATCTCAGTAAAAGCCC 57.492 34.615 0.00 0.00 32.29 5.19
1322 1380 6.818644 CAGGCAAAGATAGTATGTGTACAGTT 59.181 38.462 0.00 0.00 33.09 3.16
1324 1382 6.573434 TCAGGCAAAGATAGTATGTGTACAG 58.427 40.000 0.00 0.00 33.09 2.74
1332 1390 9.632638 ACAACAATAATCAGGCAAAGATAGTAT 57.367 29.630 0.00 0.00 0.00 2.12
1334 1392 7.944729 ACAACAATAATCAGGCAAAGATAGT 57.055 32.000 0.00 0.00 0.00 2.12
1339 1400 8.028354 TCACAATACAACAATAATCAGGCAAAG 58.972 33.333 0.00 0.00 0.00 2.77
1343 1404 6.974622 CCTTCACAATACAACAATAATCAGGC 59.025 38.462 0.00 0.00 0.00 4.85
1344 1405 7.339212 TCCCTTCACAATACAACAATAATCAGG 59.661 37.037 0.00 0.00 0.00 3.86
1351 1412 7.015098 TCACATTTCCCTTCACAATACAACAAT 59.985 33.333 0.00 0.00 0.00 2.71
1352 1413 6.322456 TCACATTTCCCTTCACAATACAACAA 59.678 34.615 0.00 0.00 0.00 2.83
1355 1416 5.048083 GCTCACATTTCCCTTCACAATACAA 60.048 40.000 0.00 0.00 0.00 2.41
1356 1417 4.458989 GCTCACATTTCCCTTCACAATACA 59.541 41.667 0.00 0.00 0.00 2.29
1357 1418 4.437390 CGCTCACATTTCCCTTCACAATAC 60.437 45.833 0.00 0.00 0.00 1.89
1359 1420 2.489329 CGCTCACATTTCCCTTCACAAT 59.511 45.455 0.00 0.00 0.00 2.71
1360 1421 1.879380 CGCTCACATTTCCCTTCACAA 59.121 47.619 0.00 0.00 0.00 3.33
1361 1422 1.202758 ACGCTCACATTTCCCTTCACA 60.203 47.619 0.00 0.00 0.00 3.58
1362 1423 1.197721 CACGCTCACATTTCCCTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
1363 1424 1.522668 CACGCTCACATTTCCCTTCA 58.477 50.000 0.00 0.00 0.00 3.02
1364 1425 0.169009 GCACGCTCACATTTCCCTTC 59.831 55.000 0.00 0.00 0.00 3.46
1366 1427 2.034879 CGCACGCTCACATTTCCCT 61.035 57.895 0.00 0.00 0.00 4.20
1367 1428 1.369091 ATCGCACGCTCACATTTCCC 61.369 55.000 0.00 0.00 0.00 3.97
1368 1429 0.247814 CATCGCACGCTCACATTTCC 60.248 55.000 0.00 0.00 0.00 3.13
1378 1439 2.159572 ACCTACAATTTTCATCGCACGC 60.160 45.455 0.00 0.00 0.00 5.34
1380 1441 4.083537 TGACACCTACAATTTTCATCGCAC 60.084 41.667 0.00 0.00 0.00 5.34
1383 1444 6.147821 AGTTCTGACACCTACAATTTTCATCG 59.852 38.462 0.00 0.00 0.00 3.84
1393 1454 2.297315 CTCAGCAGTTCTGACACCTACA 59.703 50.000 3.84 0.00 46.34 2.74
1394 1455 2.353208 CCTCAGCAGTTCTGACACCTAC 60.353 54.545 3.84 0.00 46.34 3.18
1399 1460 1.762370 TGAACCTCAGCAGTTCTGACA 59.238 47.619 3.84 0.00 46.34 3.58
1400 1461 2.533266 TGAACCTCAGCAGTTCTGAC 57.467 50.000 3.84 0.00 46.34 3.51
1410 1471 6.580788 ACTACTGATGAATCATGAACCTCAG 58.419 40.000 23.20 23.20 36.02 3.35
1411 1472 6.550938 ACTACTGATGAATCATGAACCTCA 57.449 37.500 0.00 3.66 36.02 3.86
1412 1473 6.820656 ACAACTACTGATGAATCATGAACCTC 59.179 38.462 0.00 0.83 36.02 3.85
1413 1474 6.715280 ACAACTACTGATGAATCATGAACCT 58.285 36.000 0.00 0.00 36.02 3.50
1414 1475 6.992063 ACAACTACTGATGAATCATGAACC 57.008 37.500 0.00 0.00 36.02 3.62
1415 1476 7.810658 ACAACAACTACTGATGAATCATGAAC 58.189 34.615 0.00 0.00 36.02 3.18
1416 1477 7.984422 ACAACAACTACTGATGAATCATGAA 57.016 32.000 0.00 0.00 36.02 2.57
1417 1478 7.984422 AACAACAACTACTGATGAATCATGA 57.016 32.000 0.00 0.00 36.02 3.07
1425 1486 9.838975 TGCATAATAAAACAACAACTACTGATG 57.161 29.630 0.00 0.00 34.11 3.07
1427 1488 9.672086 GTTGCATAATAAAACAACAACTACTGA 57.328 29.630 0.00 0.00 41.53 3.41
1428 1489 9.457110 TGTTGCATAATAAAACAACAACTACTG 57.543 29.630 5.04 0.00 46.72 2.74
1438 1499 7.542890 ACGAATGGATGTTGCATAATAAAACA 58.457 30.769 0.00 0.00 38.13 2.83
1460 1521 7.097192 AGACATAATCAGAACAGCTAAAACGA 58.903 34.615 0.00 0.00 0.00 3.85
1461 1522 7.295952 AGACATAATCAGAACAGCTAAAACG 57.704 36.000 0.00 0.00 0.00 3.60
1467 1528 8.887717 GTTGATAAAGACATAATCAGAACAGCT 58.112 33.333 0.00 0.00 31.64 4.24
1498 1560 2.954318 CACCAGCCTCCCAATATTTCTG 59.046 50.000 0.00 0.00 0.00 3.02
1578 1640 2.206576 AAACCTCCTCTCCAACATGC 57.793 50.000 0.00 0.00 0.00 4.06
1584 1646 4.175962 ACTTTCCATAAACCTCCTCTCCA 58.824 43.478 0.00 0.00 0.00 3.86
1593 1655 8.360390 ACATCAAGAAGAAACTTTCCATAAACC 58.640 33.333 0.00 0.00 0.00 3.27
1629 1691 3.581332 TCCCGACAACACTAATTCCTTCT 59.419 43.478 0.00 0.00 0.00 2.85
1641 1703 1.974265 TTTCAAGCATCCCGACAACA 58.026 45.000 0.00 0.00 0.00 3.33
1647 1709 1.473677 TCAGCATTTTCAAGCATCCCG 59.526 47.619 0.00 0.00 0.00 5.14
1686 1748 2.288457 GCATAGAAGCGTCTCATAGGCA 60.288 50.000 5.11 0.00 41.54 4.75
1728 1790 0.106868 TGCAGAATCCATGCCTCTGG 60.107 55.000 14.91 0.00 43.18 3.86
1731 1793 0.106819 ACCTGCAGAATCCATGCCTC 60.107 55.000 17.39 0.00 43.18 4.70
1734 1796 3.179925 TGACCTGCAGAATCCATGC 57.820 52.632 17.39 0.00 44.11 4.06
1751 1813 0.911769 TAGGGGGTGCATGAGAACTG 59.088 55.000 0.00 0.00 0.00 3.16
1783 1847 5.931441 ACGAGCAAGAATATTGGCTAATC 57.069 39.130 0.00 0.00 36.59 1.75
1784 1848 7.161404 TCATACGAGCAAGAATATTGGCTAAT 58.839 34.615 0.00 0.00 36.59 1.73
1791 1855 8.487970 CACGTAAATCATACGAGCAAGAATATT 58.512 33.333 14.19 0.00 42.94 1.28
1828 1892 9.231297 CAAAGAAGGAAAGACCAGTAAATATGA 57.769 33.333 0.00 0.00 42.04 2.15
1829 1893 7.970614 GCAAAGAAGGAAAGACCAGTAAATATG 59.029 37.037 0.00 0.00 42.04 1.78
1837 1901 4.654091 TTTGCAAAGAAGGAAAGACCAG 57.346 40.909 8.05 0.00 42.04 4.00
1841 1905 5.291971 GCTGAATTTGCAAAGAAGGAAAGA 58.708 37.500 18.19 0.00 32.32 2.52
1842 1906 4.450080 GGCTGAATTTGCAAAGAAGGAAAG 59.550 41.667 18.19 8.76 32.32 2.62
1843 1907 4.379652 GGCTGAATTTGCAAAGAAGGAAA 58.620 39.130 18.19 0.00 33.34 3.13
1844 1908 3.552684 CGGCTGAATTTGCAAAGAAGGAA 60.553 43.478 18.19 0.00 0.00 3.36
1845 1909 2.030007 CGGCTGAATTTGCAAAGAAGGA 60.030 45.455 18.19 0.00 0.00 3.36
1846 1910 2.288395 ACGGCTGAATTTGCAAAGAAGG 60.288 45.455 18.19 8.95 0.00 3.46
1847 1911 2.727798 CACGGCTGAATTTGCAAAGAAG 59.272 45.455 18.19 14.59 0.00 2.85
1848 1912 2.741612 CACGGCTGAATTTGCAAAGAA 58.258 42.857 18.19 4.67 0.00 2.52
1849 1913 1.602668 GCACGGCTGAATTTGCAAAGA 60.603 47.619 18.19 3.26 34.97 2.52
1850 1914 0.785979 GCACGGCTGAATTTGCAAAG 59.214 50.000 18.19 4.70 34.97 2.77
1851 1915 0.103755 TGCACGGCTGAATTTGCAAA 59.896 45.000 15.44 15.44 41.90 3.68
1858 1922 2.289694 ACTAAAGTCTGCACGGCTGAAT 60.290 45.455 0.00 4.08 38.17 2.57
2068 2132 3.118592 CCAGGTTCCCATGTAAGAGAGAC 60.119 52.174 0.00 0.00 0.00 3.36
2088 2152 0.610174 AAGCGCTCTCTGTTCATCCA 59.390 50.000 12.06 0.00 0.00 3.41
2104 2168 2.099431 CCTCAGAGCGTGCTCAAGC 61.099 63.158 22.70 0.00 44.99 4.01
2107 2171 2.993840 AGCCTCAGAGCGTGCTCA 60.994 61.111 22.70 3.33 44.99 4.26
2147 2211 2.027192 TGGGTGAACTAACCTCATCTGC 60.027 50.000 0.00 0.00 40.35 4.26
2171 2235 4.386312 CCCATCCAACTTCAGGGCTTATAA 60.386 45.833 0.00 0.00 31.81 0.98
2193 2257 2.378038 TCAGCCATAATCCTGCAAACC 58.622 47.619 0.00 0.00 0.00 3.27
2209 2273 9.612620 GCATACATAACCAAATAGTAAATCAGC 57.387 33.333 0.00 0.00 0.00 4.26
2249 2313 5.733620 TGGGTGATAACTCGGATATAACC 57.266 43.478 0.00 0.00 34.60 2.85
2250 2314 8.617290 AAAATGGGTGATAACTCGGATATAAC 57.383 34.615 0.00 0.00 0.00 1.89
2257 2321 8.615878 TGAATATAAAATGGGTGATAACTCGG 57.384 34.615 0.00 0.00 0.00 4.63
2264 2328 9.479549 ACAGAACTTGAATATAAAATGGGTGAT 57.520 29.630 0.00 0.00 0.00 3.06
2276 2340 6.626623 GCCAAATCAGCACAGAACTTGAATAT 60.627 38.462 0.00 0.00 0.00 1.28
2292 2356 4.427312 GTTTATGAAGGCAGCCAAATCAG 58.573 43.478 15.80 0.00 0.00 2.90
2329 2401 0.108804 CAGGAAGGCATGCAAAGCTG 60.109 55.000 21.36 0.00 0.00 4.24
2330 2402 0.251474 TCAGGAAGGCATGCAAAGCT 60.251 50.000 21.36 3.93 0.00 3.74
2397 2470 8.526218 AATGTGACTACAAGATATCTATTGCG 57.474 34.615 5.46 0.00 40.84 4.85
2407 2480 7.175467 TCAAGCAAATGAATGTGACTACAAGAT 59.825 33.333 0.00 0.00 40.84 2.40
2437 2510 8.527810 TGTTTGATTTGTTTTTACCAGAGAAGT 58.472 29.630 0.00 0.00 0.00 3.01
2464 2537 5.521372 GCAAAAAGGAATCTGGAACATATGC 59.479 40.000 1.58 0.00 38.20 3.14
2559 2639 1.546923 TCGTTGGAAAGATAGGCACGA 59.453 47.619 0.00 0.00 33.05 4.35
2587 2667 8.203485 AGAAAAGTTCAATGTGCCAAATAGAAA 58.797 29.630 0.00 0.00 0.00 2.52
2681 2764 3.719268 TGATGTTTGCCAGTGGAGTAT 57.281 42.857 15.20 0.00 0.00 2.12
2718 2801 8.102676 AGCCAGGTTAAATTCAGCAAATAAAAT 58.897 29.630 0.00 0.00 0.00 1.82
2735 2818 2.832129 CACTGTCCTCTAAGCCAGGTTA 59.168 50.000 0.00 0.00 32.20 2.85
2757 2840 5.078411 AGAATAAGTACAGCACACTCAGG 57.922 43.478 0.00 0.00 0.00 3.86
2788 2871 1.066573 AGTGGTGAGAAATGAGGCGAG 60.067 52.381 0.00 0.00 0.00 5.03
2805 2888 5.830912 TGTCAAAGCAATAAACAGGAAGTG 58.169 37.500 0.00 0.00 0.00 3.16
2806 2889 6.076981 CTGTCAAAGCAATAAACAGGAAGT 57.923 37.500 0.00 0.00 34.96 3.01
2941 3024 4.192000 AGCGCTTTCGGTGATCAG 57.808 55.556 2.64 0.00 45.53 2.90
2955 3038 0.311790 AAGGTGCACATGAAACAGCG 59.688 50.000 20.43 0.00 36.92 5.18
3013 3096 3.788227 TCCATTACTTGTGCCAAGAGT 57.212 42.857 18.22 3.71 0.00 3.24
3164 3247 0.370273 GTGTGCTAATCGCCGACAAG 59.630 55.000 0.00 0.00 38.05 3.16
3168 3251 1.100510 ACTAGTGTGCTAATCGCCGA 58.899 50.000 0.00 0.00 38.05 5.54
3187 3270 2.616960 CACCGACTGCATTTGCTAGTA 58.383 47.619 3.94 0.00 42.66 1.82
3221 3304 2.672908 CTGCCTGCTCCACATCCA 59.327 61.111 0.00 0.00 0.00 3.41
3236 3319 1.751351 TCTAGGTGAGCGACATTCCTG 59.249 52.381 0.00 0.00 0.00 3.86
3281 3364 1.683917 CCTTCCTCGTTGAGATCGGAT 59.316 52.381 0.00 0.00 0.00 4.18
3314 3397 2.106338 TGAGCATCCTTCAACCAACTCA 59.894 45.455 0.00 0.00 0.00 3.41
3321 3404 2.999355 GACAGACTGAGCATCCTTCAAC 59.001 50.000 10.08 0.00 0.00 3.18
3389 3472 1.408422 GGACAACATTCACAAAGCGC 58.592 50.000 0.00 0.00 0.00 5.92
3481 3564 4.533919 ATCTACTACTCAGCATGGCATC 57.466 45.455 0.00 0.00 36.16 3.91
3617 3700 8.298854 CACTTGGTAAAATCACATTCTCATCAA 58.701 33.333 0.00 0.00 0.00 2.57
3691 3779 6.004574 GGAAACTACCAAAATCACCTCTCTT 58.995 40.000 0.00 0.00 0.00 2.85
3692 3780 5.515008 GGGAAACTACCAAAATCACCTCTCT 60.515 44.000 0.00 0.00 0.00 3.10
3693 3781 4.700692 GGGAAACTACCAAAATCACCTCTC 59.299 45.833 0.00 0.00 0.00 3.20
3694 3782 4.508584 GGGGAAACTACCAAAATCACCTCT 60.509 45.833 0.00 0.00 30.71 3.69
3695 3783 3.762288 GGGGAAACTACCAAAATCACCTC 59.238 47.826 0.00 0.00 30.71 3.85
3735 3824 1.885887 GGCCACTGCACAGTTATCAAA 59.114 47.619 0.00 0.00 40.20 2.69
3792 3882 1.205655 CTCAGTCCATGGTGTCATCGT 59.794 52.381 12.58 0.00 0.00 3.73
3793 3883 1.478105 TCTCAGTCCATGGTGTCATCG 59.522 52.381 12.58 0.00 0.00 3.84
3807 4144 6.372104 TGATAGTCAATCTCAGGATCTCAGT 58.628 40.000 0.00 0.00 35.45 3.41
3857 4208 4.021631 CGCAGGCAGCACACACTG 62.022 66.667 1.96 0.00 46.13 3.66
3866 4217 4.731612 AGTCGACAGCGCAGGCAG 62.732 66.667 19.50 0.00 43.41 4.85
3876 4227 0.952280 AAGCTTCAGACGAGTCGACA 59.048 50.000 21.50 0.00 34.09 4.35
3900 4251 3.041940 GTCACACCGCGACAAGGG 61.042 66.667 8.23 0.00 33.43 3.95
3901 4252 3.403057 CGTCACACCGCGACAAGG 61.403 66.667 8.23 0.00 32.72 3.61
3902 4253 1.733041 ATCGTCACACCGCGACAAG 60.733 57.895 8.23 0.00 40.03 3.16
3903 4254 2.019408 CATCGTCACACCGCGACAA 61.019 57.895 8.23 0.00 40.03 3.18
3904 4255 2.430075 CATCGTCACACCGCGACA 60.430 61.111 8.23 0.00 40.03 4.35
3905 4256 2.126618 TCATCGTCACACCGCGAC 60.127 61.111 8.23 0.00 40.03 5.19
3906 4257 2.178273 CTCATCGTCACACCGCGA 59.822 61.111 8.23 0.00 41.50 5.87
3907 4258 2.880879 CCTCATCGTCACACCGCG 60.881 66.667 0.00 0.00 0.00 6.46
3908 4259 2.509336 CCCTCATCGTCACACCGC 60.509 66.667 0.00 0.00 0.00 5.68
3909 4260 1.884075 TTCCCCTCATCGTCACACCG 61.884 60.000 0.00 0.00 0.00 4.94
3910 4261 0.391263 GTTCCCCTCATCGTCACACC 60.391 60.000 0.00 0.00 0.00 4.16
3911 4262 0.320374 TGTTCCCCTCATCGTCACAC 59.680 55.000 0.00 0.00 0.00 3.82
3912 4263 1.001974 CTTGTTCCCCTCATCGTCACA 59.998 52.381 0.00 0.00 0.00 3.58
3913 4264 1.275291 TCTTGTTCCCCTCATCGTCAC 59.725 52.381 0.00 0.00 0.00 3.67
3914 4265 1.639722 TCTTGTTCCCCTCATCGTCA 58.360 50.000 0.00 0.00 0.00 4.35
3915 4266 2.168521 TCATCTTGTTCCCCTCATCGTC 59.831 50.000 0.00 0.00 0.00 4.20
3916 4267 2.187958 TCATCTTGTTCCCCTCATCGT 58.812 47.619 0.00 0.00 0.00 3.73
3917 4268 2.939103 GTTCATCTTGTTCCCCTCATCG 59.061 50.000 0.00 0.00 0.00 3.84
3918 4269 4.227864 AGTTCATCTTGTTCCCCTCATC 57.772 45.455 0.00 0.00 0.00 2.92
3919 4270 4.043310 TGAAGTTCATCTTGTTCCCCTCAT 59.957 41.667 0.08 0.00 36.40 2.90
3920 4271 3.394274 TGAAGTTCATCTTGTTCCCCTCA 59.606 43.478 0.08 0.00 36.40 3.86
3921 4272 4.021102 TGAAGTTCATCTTGTTCCCCTC 57.979 45.455 0.08 0.00 36.40 4.30
3922 4273 4.141158 AGTTGAAGTTCATCTTGTTCCCCT 60.141 41.667 6.36 0.00 36.40 4.79
3923 4274 4.022849 CAGTTGAAGTTCATCTTGTTCCCC 60.023 45.833 12.79 0.00 36.40 4.81
3924 4275 4.022849 CCAGTTGAAGTTCATCTTGTTCCC 60.023 45.833 12.79 0.00 36.40 3.97
3925 4276 4.022849 CCCAGTTGAAGTTCATCTTGTTCC 60.023 45.833 12.79 0.00 36.40 3.62
3926 4277 4.580580 ACCCAGTTGAAGTTCATCTTGTTC 59.419 41.667 12.79 0.00 36.40 3.18
3927 4278 4.339247 CACCCAGTTGAAGTTCATCTTGTT 59.661 41.667 12.79 0.00 36.40 2.83
3928 4279 3.885297 CACCCAGTTGAAGTTCATCTTGT 59.115 43.478 12.79 10.57 36.40 3.16
3929 4280 4.136796 TCACCCAGTTGAAGTTCATCTTG 58.863 43.478 12.79 10.04 36.40 3.02
3930 4281 4.437682 TCACCCAGTTGAAGTTCATCTT 57.562 40.909 12.79 0.00 39.32 2.40
3931 4282 4.647564 ATCACCCAGTTGAAGTTCATCT 57.352 40.909 6.36 8.53 0.00 2.90
3932 4283 5.123979 GGTAATCACCCAGTTGAAGTTCATC 59.876 44.000 6.36 6.10 39.11 2.92
3933 4284 5.010282 GGTAATCACCCAGTTGAAGTTCAT 58.990 41.667 6.36 0.00 39.11 2.57
3934 4285 4.394729 GGTAATCACCCAGTTGAAGTTCA 58.605 43.478 0.08 0.08 39.11 3.18
3945 4296 4.852142 TGGGAGCTGAGGTAATCACCCA 62.852 54.545 4.15 4.15 45.18 4.51
3947 4298 1.139853 CTGGGAGCTGAGGTAATCACC 59.860 57.143 0.00 0.00 46.19 4.02
3948 4299 1.139853 CCTGGGAGCTGAGGTAATCAC 59.860 57.143 0.00 0.00 33.22 3.06
3949 4300 1.008327 TCCTGGGAGCTGAGGTAATCA 59.992 52.381 0.00 0.00 36.21 2.57
3950 4301 1.794714 TCCTGGGAGCTGAGGTAATC 58.205 55.000 0.00 0.00 0.00 1.75
3981 4332 5.940192 TTTCAGTTTGCACTACATGTAGG 57.060 39.130 31.20 22.01 37.49 3.18
4089 4440 2.307098 AGGAGAAGTGGAACATCCTTGG 59.693 50.000 0.00 0.00 41.82 3.61
4090 4441 3.604582 GAGGAGAAGTGGAACATCCTTG 58.395 50.000 0.00 0.00 43.68 3.61
4094 4445 2.679349 GCTGGAGGAGAAGTGGAACATC 60.679 54.545 0.00 0.00 44.52 3.06
4154 4505 2.480426 CTTTTGTGTCGCGACGAGGC 62.480 60.000 31.88 21.67 36.23 4.70
4160 4511 1.082169 GCATGCTTTTGTGTCGCGA 60.082 52.632 11.37 3.71 0.00 5.87
4202 4558 1.478510 ACGGCAGTAATCTCTCTGTGG 59.521 52.381 0.00 0.00 34.57 4.17
4208 4564 2.694109 GGGAAGTACGGCAGTAATCTCT 59.306 50.000 0.00 0.00 34.16 3.10
4243 4599 0.391661 ACGCGAACTTCATGATGCCT 60.392 50.000 15.93 0.00 0.00 4.75
4339 4695 9.463443 CGTCTCATGATGTTTATTGACATACTA 57.537 33.333 0.00 0.00 40.21 1.82
4340 4696 7.042456 GCGTCTCATGATGTTTATTGACATACT 60.042 37.037 0.00 0.00 40.21 2.12
4341 4697 7.042456 AGCGTCTCATGATGTTTATTGACATAC 60.042 37.037 0.00 0.00 40.21 2.39
4362 4718 3.031660 CGAAGGACTTGGTAGCGTC 57.968 57.895 0.00 0.00 0.00 5.19
4406 4762 7.469537 TTTTTGGACTGGAAAGAAACAAGTA 57.530 32.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.