Multiple sequence alignment - TraesCS4A01G023400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G023400 chr4A 100.000 3221 0 0 1 3221 16504714 16507934 0.000000e+00 5949.0
1 TraesCS4A01G023400 chr4B 91.263 1980 85 41 474 2411 562928757 562926824 0.000000e+00 2617.0
2 TraesCS4A01G023400 chr4B 90.368 571 39 8 2653 3221 562913557 562913001 0.000000e+00 736.0
3 TraesCS4A01G023400 chr4B 91.323 461 34 3 2508 2962 562912436 562911976 2.730000e-175 625.0
4 TraesCS4A01G023400 chr4B 90.000 390 20 9 2834 3221 562926766 562926394 1.340000e-133 486.0
5 TraesCS4A01G023400 chr4B 85.603 257 10 4 1 230 562929178 562928922 8.930000e-61 244.0
6 TraesCS4A01G023400 chr4B 78.929 280 36 15 2949 3221 562885685 562885422 5.530000e-38 169.0
7 TraesCS4A01G023400 chr4D 88.462 2106 110 69 476 2522 450149082 450147051 0.000000e+00 2420.0
8 TraesCS4A01G023400 chr4D 89.583 240 14 5 1 230 450149531 450149293 8.740000e-76 294.0
9 TraesCS4A01G023400 chr4D 89.076 119 9 4 282 397 44750984 44751101 9.310000e-31 145.0
10 TraesCS4A01G023400 chr5D 85.326 368 42 7 2627 2986 438340434 438340797 1.410000e-98 370.0
11 TraesCS4A01G023400 chr5D 88.889 207 16 4 2785 2985 438340817 438341022 6.900000e-62 248.0
12 TraesCS4A01G023400 chr5D 91.477 176 12 3 3047 3221 438341052 438341225 4.150000e-59 239.0
13 TraesCS4A01G023400 chr5D 90.000 140 11 3 3083 3221 438341230 438341367 9.180000e-41 178.0
14 TraesCS4A01G023400 chr5D 81.905 210 30 8 3016 3221 438341304 438341509 1.540000e-38 171.0
15 TraesCS4A01G023400 chr5B 83.686 331 33 13 2897 3221 550420143 550420458 3.140000e-75 292.0
16 TraesCS4A01G023400 chr1D 81.685 273 47 2 1445 1717 329725997 329725728 1.160000e-54 224.0
17 TraesCS4A01G023400 chr1B 77.396 407 71 8 1311 1717 444682785 444682400 4.180000e-54 222.0
18 TraesCS4A01G023400 chr1A 81.716 268 46 2 1450 1717 426882139 426881875 1.500000e-53 220.0
19 TraesCS4A01G023400 chr3A 89.474 133 10 4 268 396 602223849 602223717 7.150000e-37 165.0
20 TraesCS4A01G023400 chr3A 84.768 151 21 2 239 389 158406122 158405974 2.000000e-32 150.0
21 TraesCS4A01G023400 chr2B 89.231 130 13 1 268 397 790399713 790399841 9.250000e-36 161.0
22 TraesCS4A01G023400 chr2B 83.784 111 4 7 1787 1894 34588403 34588502 3.420000e-15 93.5
23 TraesCS4A01G023400 chr2B 91.667 48 4 0 1783 1830 408438262 408438215 2.070000e-07 67.6
24 TraesCS4A01G023400 chr3D 87.879 132 12 4 268 397 535669888 535670017 5.570000e-33 152.0
25 TraesCS4A01G023400 chr7D 89.744 117 10 1 281 397 163200941 163201055 7.200000e-32 148.0
26 TraesCS4A01G023400 chr7D 87.023 131 14 3 268 397 80767072 80766944 9.310000e-31 145.0
27 TraesCS4A01G023400 chr7D 83.051 59 9 1 3072 3130 87747917 87747974 6.000000e-03 52.8
28 TraesCS4A01G023400 chr5A 83.117 154 24 2 268 420 673376109 673375957 4.330000e-29 139.0
29 TraesCS4A01G023400 chr5A 81.935 155 22 4 2818 2968 693652056 693651904 3.370000e-25 126.0
30 TraesCS4A01G023400 chr6D 81.765 170 22 6 235 401 462633997 462634160 2.020000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G023400 chr4A 16504714 16507934 3220 False 5949.000000 5949 100.000000 1 3221 1 chr4A.!!$F1 3220
1 TraesCS4A01G023400 chr4B 562926394 562929178 2784 True 1115.666667 2617 88.955333 1 3221 3 chr4B.!!$R3 3220
2 TraesCS4A01G023400 chr4B 562911976 562913557 1581 True 680.500000 736 90.845500 2508 3221 2 chr4B.!!$R2 713
3 TraesCS4A01G023400 chr4D 450147051 450149531 2480 True 1357.000000 2420 89.022500 1 2522 2 chr4D.!!$R1 2521
4 TraesCS4A01G023400 chr5D 438340434 438341509 1075 False 241.200000 370 87.519400 2627 3221 5 chr5D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 157 0.789383 GCGCGTTTCCAAATCACTCG 60.789 55.0 8.43 0.00 0.0 4.18 F
616 830 0.877649 ACTCATCGATCGTGCATGCC 60.878 55.0 16.68 5.63 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1509 0.179067 AACCCAAAGTGAGCGAACGA 60.179 50.0 0.0 0.0 0.00 3.85 R
2556 2844 0.040425 CTTCAAGGGAAACAACCGCG 60.040 55.0 0.0 0.0 31.35 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.500227 TGTCAAAAATAGATCATCTGCCCTTAG 59.500 37.037 0.00 0.00 0.00 2.18
57 63 5.451908 CCTTAGTACACACTGCAACAAATG 58.548 41.667 0.00 0.00 36.14 2.32
124 130 1.059942 CCAAAGCGCGTTTCCAAATC 58.940 50.000 9.12 0.00 0.00 2.17
125 131 1.601663 CCAAAGCGCGTTTCCAAATCA 60.602 47.619 9.12 0.00 0.00 2.57
129 157 0.789383 GCGCGTTTCCAAATCACTCG 60.789 55.000 8.43 0.00 0.00 4.18
132 160 2.571206 GCGTTTCCAAATCACTCGTTC 58.429 47.619 0.00 0.00 0.00 3.95
142 170 7.481642 TCCAAATCACTCGTTCTCTAATCTAC 58.518 38.462 0.00 0.00 0.00 2.59
204 235 6.430925 ACATAATATATGCGTGTGCTTTCCAT 59.569 34.615 0.00 0.00 43.34 3.41
223 254 5.356575 TCCATGAGGATTGGGAGATGATAT 58.643 41.667 0.00 0.00 39.61 1.63
224 255 5.794289 TCCATGAGGATTGGGAGATGATATT 59.206 40.000 0.00 0.00 39.61 1.28
225 256 5.886474 CCATGAGGATTGGGAGATGATATTG 59.114 44.000 0.00 0.00 36.89 1.90
226 257 6.296836 CCATGAGGATTGGGAGATGATATTGA 60.297 42.308 0.00 0.00 36.89 2.57
227 258 6.964876 TGAGGATTGGGAGATGATATTGAT 57.035 37.500 0.00 0.00 0.00 2.57
228 259 7.339177 TGAGGATTGGGAGATGATATTGATT 57.661 36.000 0.00 0.00 0.00 2.57
229 260 7.173032 TGAGGATTGGGAGATGATATTGATTG 58.827 38.462 0.00 0.00 0.00 2.67
230 261 6.491383 AGGATTGGGAGATGATATTGATTGG 58.509 40.000 0.00 0.00 0.00 3.16
231 262 6.046405 AGGATTGGGAGATGATATTGATTGGT 59.954 38.462 0.00 0.00 0.00 3.67
235 266 7.631510 TGGGAGATGATATTGATTGGTCTAA 57.368 36.000 0.00 0.00 0.00 2.10
236 267 7.453393 TGGGAGATGATATTGATTGGTCTAAC 58.547 38.462 0.00 0.00 0.00 2.34
237 268 6.591834 GGGAGATGATATTGATTGGTCTAACG 59.408 42.308 0.00 0.00 0.00 3.18
238 269 6.591834 GGAGATGATATTGATTGGTCTAACGG 59.408 42.308 0.00 0.00 0.00 4.44
239 270 6.467677 AGATGATATTGATTGGTCTAACGGG 58.532 40.000 0.00 0.00 0.00 5.28
240 271 5.880164 TGATATTGATTGGTCTAACGGGA 57.120 39.130 0.00 0.00 0.00 5.14
241 272 6.433847 TGATATTGATTGGTCTAACGGGAT 57.566 37.500 0.00 0.00 0.00 3.85
242 273 6.837312 TGATATTGATTGGTCTAACGGGATT 58.163 36.000 0.00 0.00 0.00 3.01
243 274 6.710295 TGATATTGATTGGTCTAACGGGATTG 59.290 38.462 0.00 0.00 0.00 2.67
244 275 3.275617 TGATTGGTCTAACGGGATTGG 57.724 47.619 0.00 0.00 0.00 3.16
245 276 2.574369 TGATTGGTCTAACGGGATTGGT 59.426 45.455 0.00 0.00 0.00 3.67
246 277 3.775866 TGATTGGTCTAACGGGATTGGTA 59.224 43.478 0.00 0.00 0.00 3.25
247 278 4.225492 TGATTGGTCTAACGGGATTGGTAA 59.775 41.667 0.00 0.00 0.00 2.85
248 279 4.847990 TTGGTCTAACGGGATTGGTAAT 57.152 40.909 0.00 0.00 0.00 1.89
249 280 4.847990 TGGTCTAACGGGATTGGTAATT 57.152 40.909 0.00 0.00 0.00 1.40
250 281 4.773013 TGGTCTAACGGGATTGGTAATTC 58.227 43.478 0.00 0.00 0.00 2.17
251 282 4.472108 TGGTCTAACGGGATTGGTAATTCT 59.528 41.667 0.00 0.00 0.00 2.40
252 283 5.055144 GGTCTAACGGGATTGGTAATTCTC 58.945 45.833 0.00 0.00 0.00 2.87
253 284 5.395990 GGTCTAACGGGATTGGTAATTCTCA 60.396 44.000 0.00 0.00 0.00 3.27
254 285 5.753921 GTCTAACGGGATTGGTAATTCTCAG 59.246 44.000 0.00 0.00 0.00 3.35
255 286 4.569719 AACGGGATTGGTAATTCTCAGT 57.430 40.909 0.00 0.00 0.00 3.41
256 287 4.569719 ACGGGATTGGTAATTCTCAGTT 57.430 40.909 0.00 0.00 0.00 3.16
257 288 4.261801 ACGGGATTGGTAATTCTCAGTTG 58.738 43.478 0.00 0.00 0.00 3.16
258 289 4.019681 ACGGGATTGGTAATTCTCAGTTGA 60.020 41.667 0.00 0.00 0.00 3.18
259 290 4.332819 CGGGATTGGTAATTCTCAGTTGAC 59.667 45.833 0.00 0.00 0.00 3.18
260 291 4.640647 GGGATTGGTAATTCTCAGTTGACC 59.359 45.833 0.00 0.00 0.00 4.02
261 292 4.332819 GGATTGGTAATTCTCAGTTGACCG 59.667 45.833 0.00 0.00 0.00 4.79
262 293 4.610605 TTGGTAATTCTCAGTTGACCGA 57.389 40.909 0.00 0.00 0.00 4.69
263 294 4.188247 TGGTAATTCTCAGTTGACCGAG 57.812 45.455 0.00 0.00 0.00 4.63
264 295 3.830178 TGGTAATTCTCAGTTGACCGAGA 59.170 43.478 0.00 0.00 36.50 4.04
265 296 4.174762 GGTAATTCTCAGTTGACCGAGAC 58.825 47.826 0.00 0.00 37.99 3.36
266 297 4.082136 GGTAATTCTCAGTTGACCGAGACT 60.082 45.833 0.00 0.00 37.99 3.24
267 298 3.859411 ATTCTCAGTTGACCGAGACTC 57.141 47.619 0.00 0.00 37.99 3.36
268 299 2.570415 TCTCAGTTGACCGAGACTCT 57.430 50.000 0.03 0.00 33.37 3.24
269 300 3.697619 TCTCAGTTGACCGAGACTCTA 57.302 47.619 0.03 0.00 33.37 2.43
270 301 4.223556 TCTCAGTTGACCGAGACTCTAT 57.776 45.455 0.03 0.00 33.37 1.98
271 302 5.354842 TCTCAGTTGACCGAGACTCTATA 57.645 43.478 0.03 0.00 33.37 1.31
272 303 5.931294 TCTCAGTTGACCGAGACTCTATAT 58.069 41.667 0.03 0.00 33.37 0.86
273 304 6.358178 TCTCAGTTGACCGAGACTCTATATT 58.642 40.000 0.03 0.00 33.37 1.28
274 305 6.483974 TCTCAGTTGACCGAGACTCTATATTC 59.516 42.308 0.03 0.00 33.37 1.75
275 306 6.120220 TCAGTTGACCGAGACTCTATATTCA 58.880 40.000 0.03 0.00 0.00 2.57
276 307 6.773200 TCAGTTGACCGAGACTCTATATTCAT 59.227 38.462 0.03 0.00 0.00 2.57
277 308 6.860539 CAGTTGACCGAGACTCTATATTCATG 59.139 42.308 0.03 0.00 0.00 3.07
278 309 5.966742 TGACCGAGACTCTATATTCATGG 57.033 43.478 0.03 0.00 0.00 3.66
279 310 5.631119 TGACCGAGACTCTATATTCATGGA 58.369 41.667 0.03 0.00 0.00 3.41
280 311 6.068670 TGACCGAGACTCTATATTCATGGAA 58.931 40.000 0.03 0.00 0.00 3.53
281 312 6.721668 TGACCGAGACTCTATATTCATGGAAT 59.278 38.462 0.03 0.00 36.20 3.01
282 313 7.094162 TGACCGAGACTCTATATTCATGGAATC 60.094 40.741 0.03 0.00 33.95 2.52
283 314 6.951198 ACCGAGACTCTATATTCATGGAATCT 59.049 38.462 0.03 0.00 31.74 2.40
284 315 7.453126 ACCGAGACTCTATATTCATGGAATCTT 59.547 37.037 0.03 0.00 29.54 2.40
285 316 8.961634 CCGAGACTCTATATTCATGGAATCTTA 58.038 37.037 0.03 0.00 29.54 2.10
286 317 9.781834 CGAGACTCTATATTCATGGAATCTTAC 57.218 37.037 0.03 0.00 29.54 2.34
287 318 9.781834 GAGACTCTATATTCATGGAATCTTACG 57.218 37.037 0.00 0.00 29.54 3.18
288 319 9.303116 AGACTCTATATTCATGGAATCTTACGT 57.697 33.333 0.00 0.00 33.95 3.57
289 320 9.347934 GACTCTATATTCATGGAATCTTACGTG 57.652 37.037 0.00 0.00 33.95 4.49
290 321 8.307483 ACTCTATATTCATGGAATCTTACGTGG 58.693 37.037 0.00 0.00 33.95 4.94
291 322 8.417273 TCTATATTCATGGAATCTTACGTGGA 57.583 34.615 0.00 0.00 33.95 4.02
292 323 8.523658 TCTATATTCATGGAATCTTACGTGGAG 58.476 37.037 0.00 0.00 33.95 3.86
293 324 5.614324 ATTCATGGAATCTTACGTGGAGA 57.386 39.130 0.00 1.57 0.00 3.71
294 325 5.614324 TTCATGGAATCTTACGTGGAGAT 57.386 39.130 9.65 9.65 35.43 2.75
295 326 5.201713 TCATGGAATCTTACGTGGAGATC 57.798 43.478 14.27 9.30 32.86 2.75
296 327 4.039245 TCATGGAATCTTACGTGGAGATCC 59.961 45.833 14.27 15.51 32.86 3.36
297 328 3.371034 TGGAATCTTACGTGGAGATCCA 58.629 45.455 19.12 19.12 45.30 3.41
311 342 6.363167 TGGAGATCCATGCAAAATTTTCTT 57.637 33.333 0.00 0.00 42.01 2.52
312 343 6.771573 TGGAGATCCATGCAAAATTTTCTTT 58.228 32.000 0.00 0.00 42.01 2.52
313 344 7.225725 TGGAGATCCATGCAAAATTTTCTTTT 58.774 30.769 0.00 0.00 42.01 2.27
314 345 7.720515 TGGAGATCCATGCAAAATTTTCTTTTT 59.279 29.630 0.00 0.00 42.01 1.94
315 346 9.218440 GGAGATCCATGCAAAATTTTCTTTTTA 57.782 29.630 0.00 0.00 35.64 1.52
317 348 9.783081 AGATCCATGCAAAATTTTCTTTTTAGT 57.217 25.926 0.00 0.00 0.00 2.24
353 384 9.554395 TTCTCTTTTACATGTTATGTCACTTGA 57.446 29.630 2.30 0.00 43.67 3.02
354 385 8.988934 TCTCTTTTACATGTTATGTCACTTGAC 58.011 33.333 2.30 2.19 43.67 3.18
355 386 8.902540 TCTTTTACATGTTATGTCACTTGACT 57.097 30.769 2.30 0.00 43.67 3.41
356 387 9.337396 TCTTTTACATGTTATGTCACTTGACTT 57.663 29.630 2.30 6.92 43.67 3.01
359 390 9.990360 TTTACATGTTATGTCACTTGACTTAGA 57.010 29.630 2.30 1.17 43.67 2.10
360 391 7.891183 ACATGTTATGTCACTTGACTTAGAC 57.109 36.000 10.63 9.45 44.99 2.59
361 392 7.671302 ACATGTTATGTCACTTGACTTAGACT 58.329 34.615 10.63 0.00 44.99 3.24
362 393 8.150945 ACATGTTATGTCACTTGACTTAGACTT 58.849 33.333 10.63 5.90 44.99 3.01
363 394 7.946655 TGTTATGTCACTTGACTTAGACTTG 57.053 36.000 10.63 0.00 44.99 3.16
364 395 6.929049 TGTTATGTCACTTGACTTAGACTTGG 59.071 38.462 10.63 0.00 44.99 3.61
365 396 5.552870 ATGTCACTTGACTTAGACTTGGT 57.447 39.130 10.63 0.00 44.99 3.67
366 397 5.353394 TGTCACTTGACTTAGACTTGGTT 57.647 39.130 10.63 0.00 44.99 3.67
367 398 6.474140 TGTCACTTGACTTAGACTTGGTTA 57.526 37.500 10.63 0.00 44.99 2.85
368 399 6.880484 TGTCACTTGACTTAGACTTGGTTAA 58.120 36.000 10.63 0.00 44.99 2.01
369 400 6.984474 TGTCACTTGACTTAGACTTGGTTAAG 59.016 38.462 10.63 9.08 44.99 1.85
370 401 6.985059 GTCACTTGACTTAGACTTGGTTAAGT 59.015 38.462 1.92 9.97 44.16 2.24
380 411 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
381 412 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
382 413 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
383 414 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
394 425 4.022464 CAGTCGACTGAGATCTAACCAC 57.978 50.000 36.73 0.00 46.59 4.16
395 426 3.440522 CAGTCGACTGAGATCTAACCACA 59.559 47.826 36.73 0.00 46.59 4.17
396 427 3.440872 AGTCGACTGAGATCTAACCACAC 59.559 47.826 19.30 0.00 0.00 3.82
397 428 3.440872 GTCGACTGAGATCTAACCACACT 59.559 47.826 8.70 0.00 0.00 3.55
398 429 3.690139 TCGACTGAGATCTAACCACACTC 59.310 47.826 0.00 0.00 0.00 3.51
399 430 3.692101 CGACTGAGATCTAACCACACTCT 59.308 47.826 0.00 0.00 0.00 3.24
400 431 4.156922 CGACTGAGATCTAACCACACTCTT 59.843 45.833 0.00 0.00 0.00 2.85
401 432 5.398603 ACTGAGATCTAACCACACTCTTG 57.601 43.478 0.00 0.00 0.00 3.02
402 433 5.080337 ACTGAGATCTAACCACACTCTTGA 58.920 41.667 0.00 0.00 0.00 3.02
403 434 5.719085 ACTGAGATCTAACCACACTCTTGAT 59.281 40.000 0.00 0.00 0.00 2.57
404 435 6.127479 ACTGAGATCTAACCACACTCTTGATC 60.127 42.308 0.00 0.00 0.00 2.92
405 436 5.954752 TGAGATCTAACCACACTCTTGATCT 59.045 40.000 0.00 0.00 40.92 2.75
406 437 7.119387 TGAGATCTAACCACACTCTTGATCTA 58.881 38.462 0.00 0.00 39.13 1.98
407 438 7.615757 TGAGATCTAACCACACTCTTGATCTAA 59.384 37.037 0.00 0.00 39.13 2.10
408 439 8.367660 AGATCTAACCACACTCTTGATCTAAA 57.632 34.615 0.00 0.00 37.83 1.85
409 440 8.986991 AGATCTAACCACACTCTTGATCTAAAT 58.013 33.333 0.00 0.00 37.83 1.40
410 441 8.954950 ATCTAACCACACTCTTGATCTAAATG 57.045 34.615 0.00 0.00 0.00 2.32
411 442 8.134202 TCTAACCACACTCTTGATCTAAATGA 57.866 34.615 0.00 0.00 0.00 2.57
412 443 8.253810 TCTAACCACACTCTTGATCTAAATGAG 58.746 37.037 0.00 0.00 0.00 2.90
413 444 6.611613 ACCACACTCTTGATCTAAATGAGA 57.388 37.500 0.00 0.00 39.01 3.27
414 445 6.638610 ACCACACTCTTGATCTAAATGAGAG 58.361 40.000 0.00 0.00 37.70 3.20
415 446 6.438741 ACCACACTCTTGATCTAAATGAGAGA 59.561 38.462 5.75 0.00 37.70 3.10
416 447 7.125507 ACCACACTCTTGATCTAAATGAGAGAT 59.874 37.037 5.75 0.00 37.70 2.75
417 448 7.438757 CCACACTCTTGATCTAAATGAGAGATG 59.561 40.741 5.75 4.01 37.70 2.90
418 449 8.196103 CACACTCTTGATCTAAATGAGAGATGA 58.804 37.037 5.75 0.00 37.70 2.92
419 450 8.415553 ACACTCTTGATCTAAATGAGAGATGAG 58.584 37.037 5.75 0.00 37.70 2.90
420 451 8.631797 CACTCTTGATCTAAATGAGAGATGAGA 58.368 37.037 5.75 2.30 37.70 3.27
421 452 8.853126 ACTCTTGATCTAAATGAGAGATGAGAG 58.147 37.037 14.82 14.82 41.13 3.20
422 453 8.765488 TCTTGATCTAAATGAGAGATGAGAGT 57.235 34.615 0.00 0.00 37.70 3.24
423 454 9.859152 TCTTGATCTAAATGAGAGATGAGAGTA 57.141 33.333 0.00 0.00 37.70 2.59
424 455 9.897744 CTTGATCTAAATGAGAGATGAGAGTAC 57.102 37.037 0.00 0.00 37.70 2.73
425 456 8.402798 TGATCTAAATGAGAGATGAGAGTACC 57.597 38.462 0.00 0.00 37.70 3.34
426 457 7.450014 TGATCTAAATGAGAGATGAGAGTACCC 59.550 40.741 0.00 0.00 37.70 3.69
427 458 4.927978 AAATGAGAGATGAGAGTACCCG 57.072 45.455 0.00 0.00 0.00 5.28
428 459 1.681538 TGAGAGATGAGAGTACCCGC 58.318 55.000 0.00 0.00 0.00 6.13
429 460 1.064685 TGAGAGATGAGAGTACCCGCA 60.065 52.381 0.00 0.00 0.00 5.69
430 461 2.025155 GAGAGATGAGAGTACCCGCAA 58.975 52.381 0.00 0.00 0.00 4.85
431 462 2.427453 GAGAGATGAGAGTACCCGCAAA 59.573 50.000 0.00 0.00 0.00 3.68
432 463 2.832129 AGAGATGAGAGTACCCGCAAAA 59.168 45.455 0.00 0.00 0.00 2.44
433 464 3.260884 AGAGATGAGAGTACCCGCAAAAA 59.739 43.478 0.00 0.00 0.00 1.94
458 499 7.927683 ATAATGAGAGATGAGAGAAAGGGAA 57.072 36.000 0.00 0.00 0.00 3.97
466 507 3.473625 TGAGAGAAAGGGAAAAACGGAC 58.526 45.455 0.00 0.00 0.00 4.79
469 510 4.470602 AGAGAAAGGGAAAAACGGACATT 58.529 39.130 0.00 0.00 0.00 2.71
474 515 3.496331 AGGGAAAAACGGACATTGTGAT 58.504 40.909 0.00 0.00 0.00 3.06
492 692 9.609950 CATTGTGATTTCTTCTTCTTCTTCTTC 57.390 33.333 0.00 0.00 0.00 2.87
510 710 8.055279 TCTTCTTCATTTTTATTAGCCAGGTG 57.945 34.615 0.00 0.00 0.00 4.00
612 826 4.040445 TGATTAACTCATCGATCGTGCA 57.960 40.909 15.94 0.00 0.00 4.57
613 827 4.620982 TGATTAACTCATCGATCGTGCAT 58.379 39.130 15.94 0.00 0.00 3.96
614 828 4.445385 TGATTAACTCATCGATCGTGCATG 59.555 41.667 15.94 11.72 0.00 4.06
616 830 0.877649 ACTCATCGATCGTGCATGCC 60.878 55.000 16.68 5.63 0.00 4.40
618 832 1.888638 CATCGATCGTGCATGCCCA 60.889 57.895 16.68 0.00 0.00 5.36
619 833 1.889105 ATCGATCGTGCATGCCCAC 60.889 57.895 16.68 6.67 0.00 4.61
621 835 2.793946 GATCGTGCATGCCCACAC 59.206 61.111 16.68 5.45 35.47 3.82
623 837 3.272364 ATCGTGCATGCCCACACCT 62.272 57.895 16.68 0.00 35.47 4.00
624 838 3.740397 CGTGCATGCCCACACCTG 61.740 66.667 16.68 0.00 35.47 4.00
646 861 1.810030 GCCCATCTGTCGTCGTTCC 60.810 63.158 0.00 0.00 0.00 3.62
711 929 2.801063 CACACCATGAATGCGATTTCC 58.199 47.619 0.00 0.00 0.00 3.13
725 943 3.561503 CGATTTCCTCGGGTTGTTTTTC 58.438 45.455 0.00 0.00 43.82 2.29
739 957 5.849604 GGTTGTTTTTCTATTAGCGACACAC 59.150 40.000 0.00 0.00 0.00 3.82
741 964 4.150980 TGTTTTTCTATTAGCGACACACGG 59.849 41.667 0.00 0.00 42.83 4.94
746 969 2.167398 ATTAGCGACACACGGCAGGT 62.167 55.000 0.00 0.00 42.83 4.00
748 971 4.961511 GCGACACACGGCAGGTCA 62.962 66.667 0.00 0.00 42.83 4.02
749 972 2.734723 CGACACACGGCAGGTCAG 60.735 66.667 0.00 0.00 38.46 3.51
750 973 2.357517 GACACACGGCAGGTCAGG 60.358 66.667 0.00 0.00 0.00 3.86
751 974 3.883744 GACACACGGCAGGTCAGGG 62.884 68.421 0.00 0.00 0.00 4.45
811 1045 1.822990 CTCCTGCAACGTTACCCTCTA 59.177 52.381 0.00 0.00 0.00 2.43
845 1080 8.089597 TGAATTGTAATCAAGTTGGTACGTAGA 58.910 33.333 2.34 0.00 36.97 2.59
846 1081 8.475331 AATTGTAATCAAGTTGGTACGTAGAG 57.525 34.615 2.34 0.00 36.97 2.43
847 1082 6.579666 TGTAATCAAGTTGGTACGTAGAGT 57.420 37.500 2.34 0.00 0.00 3.24
848 1083 7.686438 TGTAATCAAGTTGGTACGTAGAGTA 57.314 36.000 2.34 0.00 0.00 2.59
882 1126 2.950877 CGAGAGACGTTGCAGGATC 58.049 57.895 0.00 0.00 37.22 3.36
885 1129 1.066303 GAGAGACGTTGCAGGATCGAT 59.934 52.381 0.00 0.00 0.00 3.59
915 1159 5.405797 GGCAAGGCGGTATAGTATTAGTAC 58.594 45.833 0.00 0.00 0.00 2.73
921 1165 8.144862 AGGCGGTATAGTATTAGTACTCTAGT 57.855 38.462 0.00 0.00 41.35 2.57
922 1166 9.261035 AGGCGGTATAGTATTAGTACTCTAGTA 57.739 37.037 0.00 0.64 41.35 1.82
923 1167 9.528018 GGCGGTATAGTATTAGTACTCTAGTAG 57.472 40.741 0.00 0.00 41.35 2.57
998 1243 3.421567 CTGGTATAAAGGCCAGCCC 57.578 57.895 5.01 0.00 44.65 5.19
1045 1290 1.630244 GAGCAGTAACGGCAGCACTG 61.630 60.000 12.80 12.80 42.08 3.66
1131 1382 3.805307 CAGCAGCAGCAGCAGAGC 61.805 66.667 12.92 4.44 45.49 4.09
1132 1383 4.331067 AGCAGCAGCAGCAGAGCA 62.331 61.111 12.92 0.00 45.49 4.26
1133 1384 3.134792 GCAGCAGCAGCAGAGCAT 61.135 61.111 4.63 0.00 45.49 3.79
1134 1385 3.102985 CAGCAGCAGCAGAGCATC 58.897 61.111 3.17 0.00 45.49 3.91
1135 1386 2.511829 AGCAGCAGCAGAGCATCG 60.512 61.111 3.17 0.00 45.49 3.84
1146 1397 1.522580 GAGCATCGTCAAGGAGGCC 60.523 63.158 0.00 0.00 44.30 5.19
1235 1486 2.722094 ACCACTGCACTGAAACTGAAA 58.278 42.857 0.00 0.00 0.00 2.69
1240 1491 2.684881 CTGCACTGAAACTGAAAGGTGT 59.315 45.455 0.00 0.00 39.30 4.16
1258 1509 6.432403 AGGTGTTCTCTTCTTCTTCTTGAT 57.568 37.500 0.00 0.00 0.00 2.57
1261 1512 5.923684 GTGTTCTCTTCTTCTTCTTGATCGT 59.076 40.000 0.00 0.00 0.00 3.73
1273 1527 2.731451 TCTTGATCGTTCGCTCACTTTG 59.269 45.455 0.00 0.00 0.00 2.77
1291 1545 0.394216 TGGGTTTCGGATGCTCCATG 60.394 55.000 3.57 0.00 35.91 3.66
1293 1547 0.107214 GGTTTCGGATGCTCCATGGA 60.107 55.000 15.27 15.27 35.91 3.41
1294 1548 1.681780 GGTTTCGGATGCTCCATGGAA 60.682 52.381 17.00 1.47 35.91 3.53
1295 1549 1.401905 GTTTCGGATGCTCCATGGAAC 59.598 52.381 17.00 12.52 35.91 3.62
1296 1550 0.461870 TTCGGATGCTCCATGGAACG 60.462 55.000 17.00 14.63 35.91 3.95
1298 1552 1.154205 CGGATGCTCCATGGAACGTC 61.154 60.000 23.79 23.79 35.91 4.34
1299 1553 1.154205 GGATGCTCCATGGAACGTCG 61.154 60.000 24.47 11.52 36.28 5.12
1317 1584 3.415087 GCTGCAGGGATGGGAGGT 61.415 66.667 17.12 0.00 0.00 3.85
1749 2016 4.749310 CTGCTGCTCGGGCTCGTT 62.749 66.667 9.62 0.00 39.59 3.85
2064 2343 3.741476 GACAAGCAGGCCAAGGCG 61.741 66.667 5.01 0.00 43.06 5.52
2144 2423 1.122632 TACCTGAAACAGCACGGGGA 61.123 55.000 0.00 0.00 36.91 4.81
2428 2716 5.798125 TTCCAATGTAATGGCTCAACAAA 57.202 34.783 0.00 0.00 40.46 2.83
2429 2717 5.798125 TCCAATGTAATGGCTCAACAAAA 57.202 34.783 0.00 0.00 40.46 2.44
2432 2720 7.222872 TCCAATGTAATGGCTCAACAAAATTT 58.777 30.769 0.00 0.00 40.46 1.82
2446 2734 8.483743 TCAACAAAATTTTATCGAGTCGTTTC 57.516 30.769 13.12 0.00 0.00 2.78
2450 2738 7.589954 ACAAAATTTTATCGAGTCGTTTCTTGG 59.410 33.333 13.12 0.00 0.00 3.61
2464 2752 0.961019 TCTTGGAAGGTTGCATGCAC 59.039 50.000 22.58 15.35 0.00 4.57
2482 2770 2.223112 GCACGAATCCAGCACAACTATG 60.223 50.000 0.00 0.00 0.00 2.23
2494 2782 5.051891 GCACAACTATGCTGAACTCATTT 57.948 39.130 0.00 0.00 42.62 2.32
2498 2786 5.106948 ACAACTATGCTGAACTCATTTGTCG 60.107 40.000 0.00 0.00 0.00 4.35
2505 2793 4.672413 GCTGAACTCATTTGTCGAAAACAG 59.328 41.667 0.00 0.00 39.58 3.16
2506 2794 5.504010 GCTGAACTCATTTGTCGAAAACAGA 60.504 40.000 4.52 0.00 39.58 3.41
2507 2795 6.618287 TGAACTCATTTGTCGAAAACAGAT 57.382 33.333 0.00 0.00 39.58 2.90
2508 2796 7.026631 TGAACTCATTTGTCGAAAACAGATT 57.973 32.000 0.00 0.00 39.58 2.40
2509 2797 7.132213 TGAACTCATTTGTCGAAAACAGATTC 58.868 34.615 0.00 0.00 39.58 2.52
2510 2798 6.002062 ACTCATTTGTCGAAAACAGATTCC 57.998 37.500 0.00 0.00 39.58 3.01
2511 2799 5.765182 ACTCATTTGTCGAAAACAGATTCCT 59.235 36.000 0.00 0.00 39.58 3.36
2512 2800 6.073003 ACTCATTTGTCGAAAACAGATTCCTC 60.073 38.462 0.00 0.00 39.58 3.71
2513 2801 5.762711 TCATTTGTCGAAAACAGATTCCTCA 59.237 36.000 0.00 0.00 39.58 3.86
2514 2802 6.262049 TCATTTGTCGAAAACAGATTCCTCAA 59.738 34.615 0.00 0.00 39.58 3.02
2515 2803 5.673337 TTGTCGAAAACAGATTCCTCAAG 57.327 39.130 0.00 0.00 39.58 3.02
2516 2804 4.956085 TGTCGAAAACAGATTCCTCAAGA 58.044 39.130 0.00 0.00 32.81 3.02
2517 2805 5.364778 TGTCGAAAACAGATTCCTCAAGAA 58.635 37.500 0.00 0.00 34.33 2.52
2518 2806 5.820423 TGTCGAAAACAGATTCCTCAAGAAA 59.180 36.000 0.00 0.00 33.84 2.52
2519 2807 6.317642 TGTCGAAAACAGATTCCTCAAGAAAA 59.682 34.615 0.00 0.00 33.84 2.29
2520 2808 6.853362 GTCGAAAACAGATTCCTCAAGAAAAG 59.147 38.462 0.00 0.00 38.21 2.27
2521 2809 6.765989 TCGAAAACAGATTCCTCAAGAAAAGA 59.234 34.615 0.00 0.00 38.21 2.52
2522 2810 7.041780 TCGAAAACAGATTCCTCAAGAAAAGAG 60.042 37.037 0.00 0.00 38.21 2.85
2523 2811 7.041780 CGAAAACAGATTCCTCAAGAAAAGAGA 60.042 37.037 0.00 0.00 38.21 3.10
2524 2812 8.703378 AAAACAGATTCCTCAAGAAAAGAGAT 57.297 30.769 0.00 0.00 38.21 2.75
2525 2813 8.703378 AAACAGATTCCTCAAGAAAAGAGATT 57.297 30.769 0.00 0.00 38.21 2.40
2526 2814 7.920160 ACAGATTCCTCAAGAAAAGAGATTC 57.080 36.000 0.00 0.00 38.21 2.52
2527 2815 6.883756 ACAGATTCCTCAAGAAAAGAGATTCC 59.116 38.462 0.00 0.00 38.21 3.01
2528 2816 7.111466 CAGATTCCTCAAGAAAAGAGATTCCT 58.889 38.462 0.00 0.00 38.21 3.36
2529 2817 8.263640 CAGATTCCTCAAGAAAAGAGATTCCTA 58.736 37.037 0.00 0.00 38.21 2.94
2530 2818 8.264347 AGATTCCTCAAGAAAAGAGATTCCTAC 58.736 37.037 0.00 0.00 38.21 3.18
2531 2819 5.967088 TCCTCAAGAAAAGAGATTCCTACG 58.033 41.667 0.00 0.00 35.09 3.51
2532 2820 5.480772 TCCTCAAGAAAAGAGATTCCTACGT 59.519 40.000 0.00 0.00 35.09 3.57
2533 2821 5.578727 CCTCAAGAAAAGAGATTCCTACGTG 59.421 44.000 0.00 0.00 35.09 4.49
2534 2822 4.929808 TCAAGAAAAGAGATTCCTACGTGC 59.070 41.667 0.00 0.00 0.00 5.34
2535 2823 4.537135 AGAAAAGAGATTCCTACGTGCA 57.463 40.909 0.00 0.00 0.00 4.57
2536 2824 4.246458 AGAAAAGAGATTCCTACGTGCAC 58.754 43.478 6.82 6.82 0.00 4.57
2537 2825 2.279582 AAGAGATTCCTACGTGCACG 57.720 50.000 35.99 35.99 46.33 5.34
2538 2826 0.456221 AGAGATTCCTACGTGCACGG 59.544 55.000 39.21 24.11 44.95 4.94
2539 2827 0.527817 GAGATTCCTACGTGCACGGG 60.528 60.000 39.21 31.09 44.95 5.28
2540 2828 0.968901 AGATTCCTACGTGCACGGGA 60.969 55.000 39.21 32.67 44.95 5.14
2541 2829 0.527817 GATTCCTACGTGCACGGGAG 60.528 60.000 39.21 32.60 44.95 4.30
2542 2830 1.956629 ATTCCTACGTGCACGGGAGG 61.957 60.000 37.54 37.54 43.60 4.30
2543 2831 3.379445 CCTACGTGCACGGGAGGT 61.379 66.667 36.06 23.62 44.95 3.85
2544 2832 2.181021 CTACGTGCACGGGAGGTC 59.819 66.667 39.21 0.00 44.95 3.85
2545 2833 3.352338 CTACGTGCACGGGAGGTCC 62.352 68.421 39.21 0.00 44.95 4.46
2557 2845 2.754658 AGGTCCGTGCCTCTACCG 60.755 66.667 0.00 0.00 37.09 4.02
2558 2846 4.509737 GGTCCGTGCCTCTACCGC 62.510 72.222 0.00 0.00 0.00 5.68
2559 2847 4.849329 GTCCGTGCCTCTACCGCG 62.849 72.222 0.00 0.00 36.09 6.46
2562 2850 4.430765 CGTGCCTCTACCGCGGTT 62.431 66.667 38.94 20.63 32.98 4.44
2563 2851 2.813908 GTGCCTCTACCGCGGTTG 60.814 66.667 38.94 34.11 0.00 3.77
2564 2852 3.307906 TGCCTCTACCGCGGTTGT 61.308 61.111 38.94 15.11 0.00 3.32
2565 2853 2.047560 GCCTCTACCGCGGTTGTT 60.048 61.111 38.94 14.66 0.00 2.83
2566 2854 1.670083 GCCTCTACCGCGGTTGTTT 60.670 57.895 38.94 14.20 0.00 2.83
2567 2855 1.632948 GCCTCTACCGCGGTTGTTTC 61.633 60.000 38.94 21.35 0.00 2.78
2568 2856 1.017701 CCTCTACCGCGGTTGTTTCC 61.018 60.000 38.94 0.00 0.00 3.13
2569 2857 1.004679 TCTACCGCGGTTGTTTCCC 60.005 57.895 38.94 0.00 0.00 3.97
2570 2858 1.004200 CTACCGCGGTTGTTTCCCT 60.004 57.895 38.94 10.68 0.00 4.20
2571 2859 0.604511 CTACCGCGGTTGTTTCCCTT 60.605 55.000 38.94 9.80 0.00 3.95
2572 2860 0.885596 TACCGCGGTTGTTTCCCTTG 60.886 55.000 38.94 1.62 0.00 3.61
2573 2861 1.894756 CCGCGGTTGTTTCCCTTGA 60.895 57.895 19.50 0.00 0.00 3.02
2574 2862 1.448922 CCGCGGTTGTTTCCCTTGAA 61.449 55.000 19.50 0.00 0.00 2.69
2575 2863 0.040425 CGCGGTTGTTTCCCTTGAAG 60.040 55.000 0.00 0.00 0.00 3.02
2576 2864 1.314730 GCGGTTGTTTCCCTTGAAGA 58.685 50.000 0.00 0.00 0.00 2.87
2577 2865 1.886542 GCGGTTGTTTCCCTTGAAGAT 59.113 47.619 0.00 0.00 0.00 2.40
2578 2866 2.095212 GCGGTTGTTTCCCTTGAAGATC 60.095 50.000 0.00 0.00 0.00 2.75
2579 2867 2.488153 CGGTTGTTTCCCTTGAAGATCC 59.512 50.000 0.00 0.00 0.00 3.36
2580 2868 2.488153 GGTTGTTTCCCTTGAAGATCCG 59.512 50.000 0.00 0.00 0.00 4.18
2581 2869 3.408634 GTTGTTTCCCTTGAAGATCCGA 58.591 45.455 0.00 0.00 0.00 4.55
2582 2870 3.334583 TGTTTCCCTTGAAGATCCGAG 57.665 47.619 0.00 0.00 0.00 4.63
2583 2871 2.637872 TGTTTCCCTTGAAGATCCGAGT 59.362 45.455 0.00 0.00 0.00 4.18
2584 2872 3.003480 GTTTCCCTTGAAGATCCGAGTG 58.997 50.000 0.00 0.00 0.00 3.51
2585 2873 0.537188 TCCCTTGAAGATCCGAGTGC 59.463 55.000 0.00 0.00 0.00 4.40
2586 2874 0.250234 CCCTTGAAGATCCGAGTGCA 59.750 55.000 0.00 0.00 0.00 4.57
2587 2875 1.134280 CCCTTGAAGATCCGAGTGCAT 60.134 52.381 0.00 0.00 0.00 3.96
2588 2876 1.938577 CCTTGAAGATCCGAGTGCATG 59.061 52.381 0.00 0.00 0.00 4.06
2589 2877 1.329906 CTTGAAGATCCGAGTGCATGC 59.670 52.381 11.82 11.82 0.00 4.06
2590 2878 0.249955 TGAAGATCCGAGTGCATGCA 59.750 50.000 18.46 18.46 0.00 3.96
2591 2879 1.338960 TGAAGATCCGAGTGCATGCAA 60.339 47.619 24.58 6.73 0.00 4.08
2592 2880 1.739466 GAAGATCCGAGTGCATGCAAA 59.261 47.619 24.58 6.19 0.00 3.68
2593 2881 1.089920 AGATCCGAGTGCATGCAAAC 58.910 50.000 24.58 17.73 0.00 2.93
2594 2882 0.247814 GATCCGAGTGCATGCAAACG 60.248 55.000 28.67 28.67 0.00 3.60
2595 2883 2.257286 ATCCGAGTGCATGCAAACGC 62.257 55.000 29.60 18.18 0.00 4.84
2596 2884 2.502510 CGAGTGCATGCAAACGCC 60.503 61.111 24.58 9.78 0.00 5.68
2597 2885 2.956987 GAGTGCATGCAAACGCCT 59.043 55.556 24.58 15.12 0.00 5.52
2598 2886 1.286880 GAGTGCATGCAAACGCCTT 59.713 52.632 24.58 1.92 0.00 4.35
2599 2887 0.730494 GAGTGCATGCAAACGCCTTC 60.730 55.000 24.58 7.30 0.00 3.46
2600 2888 2.082366 GTGCATGCAAACGCCTTCG 61.082 57.895 24.58 0.00 42.43 3.79
2601 2889 3.174573 GCATGCAAACGCCTTCGC 61.175 61.111 14.21 0.00 39.84 4.70
2602 2890 2.562912 CATGCAAACGCCTTCGCT 59.437 55.556 0.00 0.00 39.84 4.93
2603 2891 1.798725 CATGCAAACGCCTTCGCTG 60.799 57.895 0.00 0.00 39.84 5.18
2604 2892 2.260869 ATGCAAACGCCTTCGCTGT 61.261 52.632 0.00 0.00 39.84 4.40
2605 2893 0.953471 ATGCAAACGCCTTCGCTGTA 60.953 50.000 0.00 0.00 39.84 2.74
2606 2894 0.953471 TGCAAACGCCTTCGCTGTAT 60.953 50.000 0.00 0.00 39.84 2.29
2607 2895 0.521242 GCAAACGCCTTCGCTGTATG 60.521 55.000 0.00 0.00 39.84 2.39
2608 2896 0.521242 CAAACGCCTTCGCTGTATGC 60.521 55.000 0.00 0.00 39.84 3.14
2622 2910 5.994235 GCTGTATGCGTGTATCATAGTAC 57.006 43.478 0.00 0.00 0.00 2.73
2623 2911 4.553815 GCTGTATGCGTGTATCATAGTACG 59.446 45.833 0.00 0.00 39.37 3.67
2624 2912 5.678132 TGTATGCGTGTATCATAGTACGT 57.322 39.130 0.00 0.00 38.67 3.57
2625 2913 6.619232 GCTGTATGCGTGTATCATAGTACGTA 60.619 42.308 0.00 0.00 38.67 3.57
2652 2940 8.682936 ACATGATTGTATAGTCATTCTTTCCC 57.317 34.615 0.00 0.00 32.98 3.97
2653 2941 8.274322 ACATGATTGTATAGTCATTCTTTCCCA 58.726 33.333 0.00 0.00 32.98 4.37
2654 2942 9.293404 CATGATTGTATAGTCATTCTTTCCCAT 57.707 33.333 0.00 0.00 32.98 4.00
2655 2943 8.681486 TGATTGTATAGTCATTCTTTCCCATG 57.319 34.615 0.00 0.00 0.00 3.66
2656 2944 6.942532 TTGTATAGTCATTCTTTCCCATGC 57.057 37.500 0.00 0.00 0.00 4.06
2660 2949 3.705051 AGTCATTCTTTCCCATGCATGT 58.295 40.909 24.58 0.95 0.00 3.21
2681 2970 0.594796 GACCACTTTTTGTGCAGGCG 60.595 55.000 0.00 0.00 44.92 5.52
2722 3017 4.781934 AGCAAATAACATAGACCCACTCC 58.218 43.478 0.00 0.00 0.00 3.85
2778 3074 8.715191 ATTTTTCTGTGCAAGTGAAATTGTAA 57.285 26.923 9.72 3.95 32.56 2.41
2779 3075 8.539770 TTTTTCTGTGCAAGTGAAATTGTAAA 57.460 26.923 9.72 1.31 32.56 2.01
2780 3076 8.539770 TTTTCTGTGCAAGTGAAATTGTAAAA 57.460 26.923 9.72 0.00 32.56 1.52
2781 3077 8.539770 TTTCTGTGCAAGTGAAATTGTAAAAA 57.460 26.923 0.00 0.00 32.56 1.94
2864 3384 4.619973 TGTTTGAAATGAGTGGAATGTGC 58.380 39.130 0.00 0.00 0.00 4.57
2881 3401 6.091713 GGAATGTGCTTTTGAAATGGATGAAG 59.908 38.462 0.00 0.00 0.00 3.02
2888 3408 6.406177 GCTTTTGAAATGGATGAAGCCAGATA 60.406 38.462 0.00 0.00 42.15 1.98
2895 3415 6.645790 ATGGATGAAGCCAGATATTCAAAC 57.354 37.500 0.00 0.00 42.15 2.93
2984 3504 9.748708 TTTCTGAAATTGTCGAAATCAGATTTT 57.251 25.926 9.84 0.00 44.16 1.82
2985 3505 9.748708 TTCTGAAATTGTCGAAATCAGATTTTT 57.251 25.926 9.84 0.00 44.16 1.94
3044 3564 9.748708 TTTGAATGAGTGAAATAAGTCTTTTGG 57.251 29.630 0.00 0.00 0.00 3.28
3188 3996 9.744468 AGTTGTGTGGAATAAGTATTTTTGAAC 57.256 29.630 0.00 0.00 0.00 3.18
3189 3997 9.744468 GTTGTGTGGAATAAGTATTTTTGAACT 57.256 29.630 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.285807 TGACATTTGTTGCAGTGTGTAC 57.714 40.909 0.00 0.00 0.00 2.90
57 63 3.308530 CAACCGCTCCATTTTTCTTGAC 58.691 45.455 0.00 0.00 0.00 3.18
142 170 4.823442 TGGCTTCCATGTGCAGATTATAAG 59.177 41.667 0.00 0.00 0.00 1.73
204 235 6.964876 ATCAATATCATCTCCCAATCCTCA 57.035 37.500 0.00 0.00 0.00 3.86
223 254 3.009695 ACCAATCCCGTTAGACCAATCAA 59.990 43.478 0.00 0.00 0.00 2.57
224 255 2.574369 ACCAATCCCGTTAGACCAATCA 59.426 45.455 0.00 0.00 0.00 2.57
225 256 3.277142 ACCAATCCCGTTAGACCAATC 57.723 47.619 0.00 0.00 0.00 2.67
226 257 4.847990 TTACCAATCCCGTTAGACCAAT 57.152 40.909 0.00 0.00 0.00 3.16
227 258 4.847990 ATTACCAATCCCGTTAGACCAA 57.152 40.909 0.00 0.00 0.00 3.67
228 259 4.472108 AGAATTACCAATCCCGTTAGACCA 59.528 41.667 0.00 0.00 0.00 4.02
229 260 5.032327 AGAATTACCAATCCCGTTAGACC 57.968 43.478 0.00 0.00 0.00 3.85
230 261 5.667466 TGAGAATTACCAATCCCGTTAGAC 58.333 41.667 0.00 0.00 0.00 2.59
231 262 5.424252 ACTGAGAATTACCAATCCCGTTAGA 59.576 40.000 0.00 0.00 0.00 2.10
235 266 4.019681 TCAACTGAGAATTACCAATCCCGT 60.020 41.667 0.00 0.00 0.00 5.28
236 267 4.332819 GTCAACTGAGAATTACCAATCCCG 59.667 45.833 0.00 0.00 0.00 5.14
237 268 4.640647 GGTCAACTGAGAATTACCAATCCC 59.359 45.833 0.00 0.00 0.00 3.85
238 269 4.332819 CGGTCAACTGAGAATTACCAATCC 59.667 45.833 0.00 0.00 0.00 3.01
239 270 5.175859 TCGGTCAACTGAGAATTACCAATC 58.824 41.667 0.00 0.00 0.00 2.67
240 271 5.160607 TCGGTCAACTGAGAATTACCAAT 57.839 39.130 0.00 0.00 0.00 3.16
241 272 4.610605 TCGGTCAACTGAGAATTACCAA 57.389 40.909 0.00 0.00 0.00 3.67
251 282 6.120220 TGAATATAGAGTCTCGGTCAACTGA 58.880 40.000 0.00 0.00 0.00 3.41
252 283 6.378710 TGAATATAGAGTCTCGGTCAACTG 57.621 41.667 0.00 0.00 0.00 3.16
253 284 6.015856 CCATGAATATAGAGTCTCGGTCAACT 60.016 42.308 0.00 0.00 0.00 3.16
254 285 6.016192 TCCATGAATATAGAGTCTCGGTCAAC 60.016 42.308 0.00 0.00 0.00 3.18
255 286 6.068670 TCCATGAATATAGAGTCTCGGTCAA 58.931 40.000 0.00 0.00 0.00 3.18
256 287 5.631119 TCCATGAATATAGAGTCTCGGTCA 58.369 41.667 0.00 0.00 0.00 4.02
257 288 6.576662 TTCCATGAATATAGAGTCTCGGTC 57.423 41.667 0.00 0.00 0.00 4.79
258 289 6.951198 AGATTCCATGAATATAGAGTCTCGGT 59.049 38.462 0.00 0.00 31.89 4.69
259 290 7.403312 AGATTCCATGAATATAGAGTCTCGG 57.597 40.000 0.00 0.00 31.89 4.63
260 291 9.781834 GTAAGATTCCATGAATATAGAGTCTCG 57.218 37.037 0.00 0.00 31.89 4.04
261 292 9.781834 CGTAAGATTCCATGAATATAGAGTCTC 57.218 37.037 0.00 0.00 43.02 3.36
262 293 9.303116 ACGTAAGATTCCATGAATATAGAGTCT 57.697 33.333 0.00 0.00 43.62 3.24
263 294 9.347934 CACGTAAGATTCCATGAATATAGAGTC 57.652 37.037 0.00 0.00 43.62 3.36
264 295 8.307483 CCACGTAAGATTCCATGAATATAGAGT 58.693 37.037 0.00 0.00 43.62 3.24
265 296 8.523658 TCCACGTAAGATTCCATGAATATAGAG 58.476 37.037 0.00 0.00 43.62 2.43
266 297 8.417273 TCCACGTAAGATTCCATGAATATAGA 57.583 34.615 0.00 0.00 43.62 1.98
267 298 8.523658 TCTCCACGTAAGATTCCATGAATATAG 58.476 37.037 0.00 0.00 43.62 1.31
268 299 8.417273 TCTCCACGTAAGATTCCATGAATATA 57.583 34.615 0.00 0.00 43.62 0.86
269 300 7.303182 TCTCCACGTAAGATTCCATGAATAT 57.697 36.000 0.00 0.00 43.62 1.28
270 301 6.724893 TCTCCACGTAAGATTCCATGAATA 57.275 37.500 0.00 0.00 43.62 1.75
271 302 5.614324 TCTCCACGTAAGATTCCATGAAT 57.386 39.130 0.00 0.00 43.62 2.57
272 303 5.453339 GGATCTCCACGTAAGATTCCATGAA 60.453 44.000 12.43 0.00 43.62 2.57
273 304 4.039245 GGATCTCCACGTAAGATTCCATGA 59.961 45.833 12.43 0.00 43.62 3.07
274 305 4.202253 TGGATCTCCACGTAAGATTCCATG 60.202 45.833 17.59 0.00 42.01 3.66
275 306 3.967326 TGGATCTCCACGTAAGATTCCAT 59.033 43.478 17.59 1.02 42.01 3.41
276 307 3.371034 TGGATCTCCACGTAAGATTCCA 58.629 45.455 17.59 17.59 42.01 3.53
288 319 7.720515 AAAAAGAAAATTTTGCATGGATCTCCA 59.279 29.630 8.47 0.49 39.51 3.86
289 320 7.677454 AAAAGAAAATTTTGCATGGATCTCC 57.323 32.000 8.47 0.00 0.00 3.71
291 322 9.783081 ACTAAAAAGAAAATTTTGCATGGATCT 57.217 25.926 8.47 0.00 34.51 2.75
327 358 9.554395 TCAAGTGACATAACATGTAAAAGAGAA 57.446 29.630 0.00 0.00 45.03 2.87
328 359 8.988934 GTCAAGTGACATAACATGTAAAAGAGA 58.011 33.333 0.00 0.00 45.03 3.10
344 375 7.364408 ACTTAACCAAGTCTAAGTCAAGTGACA 60.364 37.037 13.66 0.00 43.13 3.58
345 376 6.985059 ACTTAACCAAGTCTAAGTCAAGTGAC 59.015 38.462 3.12 3.12 41.25 3.67
346 377 7.120923 ACTTAACCAAGTCTAAGTCAAGTGA 57.879 36.000 0.00 0.00 41.25 3.41
373 404 3.440522 TGTGGTTAGATCTCAGTCGACTG 59.559 47.826 34.76 34.76 45.08 3.51
374 405 3.440872 GTGTGGTTAGATCTCAGTCGACT 59.559 47.826 13.58 13.58 0.00 4.18
375 406 3.440872 AGTGTGGTTAGATCTCAGTCGAC 59.559 47.826 7.70 7.70 0.00 4.20
376 407 3.687125 AGTGTGGTTAGATCTCAGTCGA 58.313 45.455 0.00 0.00 0.00 4.20
377 408 3.692101 AGAGTGTGGTTAGATCTCAGTCG 59.308 47.826 0.00 0.00 34.77 4.18
378 409 5.184096 TCAAGAGTGTGGTTAGATCTCAGTC 59.816 44.000 0.00 3.21 0.00 3.51
379 410 5.080337 TCAAGAGTGTGGTTAGATCTCAGT 58.920 41.667 0.00 0.00 0.00 3.41
380 411 5.651387 TCAAGAGTGTGGTTAGATCTCAG 57.349 43.478 0.00 0.00 0.00 3.35
381 412 5.954752 AGATCAAGAGTGTGGTTAGATCTCA 59.045 40.000 0.00 0.00 36.88 3.27
382 413 6.463995 AGATCAAGAGTGTGGTTAGATCTC 57.536 41.667 0.00 0.00 36.88 2.75
383 414 7.962995 TTAGATCAAGAGTGTGGTTAGATCT 57.037 36.000 0.00 0.00 42.24 2.75
384 415 9.039870 CATTTAGATCAAGAGTGTGGTTAGATC 57.960 37.037 0.00 0.00 0.00 2.75
385 416 8.762645 TCATTTAGATCAAGAGTGTGGTTAGAT 58.237 33.333 0.00 0.00 0.00 1.98
386 417 8.134202 TCATTTAGATCAAGAGTGTGGTTAGA 57.866 34.615 0.00 0.00 0.00 2.10
387 418 8.253810 TCTCATTTAGATCAAGAGTGTGGTTAG 58.746 37.037 0.00 0.00 0.00 2.34
388 419 8.134202 TCTCATTTAGATCAAGAGTGTGGTTA 57.866 34.615 0.00 0.00 0.00 2.85
389 420 7.009179 TCTCATTTAGATCAAGAGTGTGGTT 57.991 36.000 0.00 0.00 0.00 3.67
390 421 6.438741 TCTCTCATTTAGATCAAGAGTGTGGT 59.561 38.462 0.00 0.00 35.91 4.16
391 422 6.871844 TCTCTCATTTAGATCAAGAGTGTGG 58.128 40.000 0.00 0.00 35.91 4.17
392 423 8.196103 TCATCTCTCATTTAGATCAAGAGTGTG 58.804 37.037 0.00 0.00 35.91 3.82
393 424 8.303780 TCATCTCTCATTTAGATCAAGAGTGT 57.696 34.615 0.00 0.00 35.91 3.55
394 425 8.631797 TCTCATCTCTCATTTAGATCAAGAGTG 58.368 37.037 0.00 0.00 35.91 3.51
395 426 8.765488 TCTCATCTCTCATTTAGATCAAGAGT 57.235 34.615 0.00 0.00 35.91 3.24
396 427 8.853126 ACTCTCATCTCTCATTTAGATCAAGAG 58.147 37.037 14.57 14.57 41.22 2.85
397 428 8.765488 ACTCTCATCTCTCATTTAGATCAAGA 57.235 34.615 0.00 0.00 31.22 3.02
398 429 9.897744 GTACTCTCATCTCTCATTTAGATCAAG 57.102 37.037 0.00 0.00 31.22 3.02
399 430 8.855110 GGTACTCTCATCTCTCATTTAGATCAA 58.145 37.037 0.00 0.00 31.22 2.57
400 431 7.450014 GGGTACTCTCATCTCTCATTTAGATCA 59.550 40.741 0.00 0.00 31.22 2.92
401 432 7.361713 CGGGTACTCTCATCTCTCATTTAGATC 60.362 44.444 0.00 0.00 31.22 2.75
402 433 6.432783 CGGGTACTCTCATCTCTCATTTAGAT 59.567 42.308 0.00 0.00 33.94 1.98
403 434 5.765677 CGGGTACTCTCATCTCTCATTTAGA 59.234 44.000 0.00 0.00 0.00 2.10
404 435 5.563867 GCGGGTACTCTCATCTCTCATTTAG 60.564 48.000 0.00 0.00 0.00 1.85
405 436 4.278669 GCGGGTACTCTCATCTCTCATTTA 59.721 45.833 0.00 0.00 0.00 1.40
406 437 3.068873 GCGGGTACTCTCATCTCTCATTT 59.931 47.826 0.00 0.00 0.00 2.32
407 438 2.625790 GCGGGTACTCTCATCTCTCATT 59.374 50.000 0.00 0.00 0.00 2.57
408 439 2.235016 GCGGGTACTCTCATCTCTCAT 58.765 52.381 0.00 0.00 0.00 2.90
409 440 1.064685 TGCGGGTACTCTCATCTCTCA 60.065 52.381 0.00 0.00 0.00 3.27
410 441 1.681538 TGCGGGTACTCTCATCTCTC 58.318 55.000 0.00 0.00 0.00 3.20
411 442 2.145397 TTGCGGGTACTCTCATCTCT 57.855 50.000 0.00 0.00 0.00 3.10
412 443 2.961526 TTTGCGGGTACTCTCATCTC 57.038 50.000 0.00 0.00 0.00 2.75
413 444 3.695830 TTTTTGCGGGTACTCTCATCT 57.304 42.857 0.00 0.00 0.00 2.90
430 461 9.406113 CCCTTTCTCTCATCTCTCATTATTTTT 57.594 33.333 0.00 0.00 0.00 1.94
431 462 8.776119 TCCCTTTCTCTCATCTCTCATTATTTT 58.224 33.333 0.00 0.00 0.00 1.82
432 463 8.329346 TCCCTTTCTCTCATCTCTCATTATTT 57.671 34.615 0.00 0.00 0.00 1.40
433 464 7.927683 TCCCTTTCTCTCATCTCTCATTATT 57.072 36.000 0.00 0.00 0.00 1.40
434 465 7.927683 TTCCCTTTCTCTCATCTCTCATTAT 57.072 36.000 0.00 0.00 0.00 1.28
435 466 7.739995 TTTCCCTTTCTCTCATCTCTCATTA 57.260 36.000 0.00 0.00 0.00 1.90
452 483 3.292460 TCACAATGTCCGTTTTTCCCTT 58.708 40.909 0.00 0.00 0.00 3.95
458 499 6.391227 AGAAGAAATCACAATGTCCGTTTT 57.609 33.333 0.00 0.00 0.00 2.43
466 507 9.609950 GAAGAAGAAGAAGAAGAAATCACAATG 57.390 33.333 0.00 0.00 0.00 2.82
469 510 8.915057 ATGAAGAAGAAGAAGAAGAAATCACA 57.085 30.769 0.00 0.00 0.00 3.58
492 692 5.184864 TGTGTCCACCTGGCTAATAAAAATG 59.815 40.000 0.00 0.00 34.44 2.32
505 705 2.338015 GCTGGCATGTGTCCACCTG 61.338 63.158 0.00 0.00 0.00 4.00
507 707 3.434319 CGCTGGCATGTGTCCACC 61.434 66.667 0.00 0.00 0.00 4.61
510 710 3.807538 CAGCGCTGGCATGTGTCC 61.808 66.667 29.88 0.00 43.41 4.02
592 796 4.665142 GCATGCACGATCGATGAGTTAATC 60.665 45.833 24.34 2.77 0.00 1.75
598 802 1.563435 GGGCATGCACGATCGATGAG 61.563 60.000 24.34 9.53 0.00 2.90
612 826 2.034687 GCAGACAGGTGTGGGCAT 59.965 61.111 0.00 0.00 0.00 4.40
613 827 4.269523 GGCAGACAGGTGTGGGCA 62.270 66.667 0.00 0.00 0.00 5.36
616 830 1.377725 GATGGGCAGACAGGTGTGG 60.378 63.158 0.00 0.00 0.00 4.17
618 832 1.130054 ACAGATGGGCAGACAGGTGT 61.130 55.000 0.00 0.00 0.00 4.16
619 833 0.392193 GACAGATGGGCAGACAGGTG 60.392 60.000 0.00 0.00 0.00 4.00
621 835 1.153489 CGACAGATGGGCAGACAGG 60.153 63.158 0.00 0.00 0.00 4.00
623 837 1.591703 GACGACAGATGGGCAGACA 59.408 57.895 0.00 0.00 0.00 3.41
624 838 1.517257 CGACGACAGATGGGCAGAC 60.517 63.158 0.00 0.00 0.00 3.51
705 923 4.848562 AGAAAAACAACCCGAGGAAATC 57.151 40.909 0.00 0.00 0.00 2.17
711 929 4.628333 TCGCTAATAGAAAAACAACCCGAG 59.372 41.667 0.00 0.00 0.00 4.63
714 932 5.049267 TGTGTCGCTAATAGAAAAACAACCC 60.049 40.000 0.00 0.00 0.00 4.11
725 943 1.200483 CTGCCGTGTGTCGCTAATAG 58.800 55.000 0.00 0.00 38.35 1.73
739 957 1.903877 ATTCAGACCCTGACCTGCCG 61.904 60.000 0.00 0.00 40.46 5.69
741 964 0.615331 TCATTCAGACCCTGACCTGC 59.385 55.000 0.00 0.00 40.46 4.85
746 969 1.487976 GCCATCTCATTCAGACCCTGA 59.512 52.381 0.00 0.00 38.87 3.86
748 971 0.467384 CGCCATCTCATTCAGACCCT 59.533 55.000 0.00 0.00 32.26 4.34
749 972 1.162800 GCGCCATCTCATTCAGACCC 61.163 60.000 0.00 0.00 32.26 4.46
750 973 1.493950 CGCGCCATCTCATTCAGACC 61.494 60.000 0.00 0.00 32.26 3.85
751 974 1.493950 CCGCGCCATCTCATTCAGAC 61.494 60.000 0.00 0.00 32.26 3.51
811 1045 8.472413 CCAACTTGATTACAATTCAATCCAGAT 58.528 33.333 13.40 3.79 35.37 2.90
881 1125 1.523711 GCCTTGCCCATCGAATCGA 60.524 57.895 8.12 8.12 41.13 3.59
882 1126 2.885676 CGCCTTGCCCATCGAATCG 61.886 63.158 0.00 0.00 0.00 3.34
885 1129 1.978455 ATACCGCCTTGCCCATCGAA 61.978 55.000 0.00 0.00 0.00 3.71
921 1165 8.417884 GGCCCAAATGCTTGTTAATTTATACTA 58.582 33.333 0.00 0.00 0.00 1.82
922 1166 7.093112 TGGCCCAAATGCTTGTTAATTTATACT 60.093 33.333 0.00 0.00 0.00 2.12
923 1167 7.044798 TGGCCCAAATGCTTGTTAATTTATAC 58.955 34.615 0.00 0.00 0.00 1.47
998 1243 0.239082 TGCAAGAAACTGCTGCATCG 59.761 50.000 1.31 0.00 43.07 3.84
1126 1377 0.809241 GCCTCCTTGACGATGCTCTG 60.809 60.000 0.00 0.00 0.00 3.35
1127 1378 1.519719 GCCTCCTTGACGATGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
1128 1379 1.522580 GGCCTCCTTGACGATGCTC 60.523 63.158 0.00 0.00 0.00 4.26
1130 1381 2.109126 GTGGCCTCCTTGACGATGC 61.109 63.158 3.32 0.00 0.00 3.91
1131 1382 1.450312 GGTGGCCTCCTTGACGATG 60.450 63.158 16.91 0.00 0.00 3.84
1132 1383 1.274703 ATGGTGGCCTCCTTGACGAT 61.275 55.000 23.90 5.87 0.00 3.73
1133 1384 1.918293 ATGGTGGCCTCCTTGACGA 60.918 57.895 23.90 3.55 0.00 4.20
1134 1385 1.746615 CATGGTGGCCTCCTTGACG 60.747 63.158 27.51 7.37 35.49 4.35
1135 1386 1.379044 CCATGGTGGCCTCCTTGAC 60.379 63.158 31.19 10.33 35.49 3.18
1146 1397 4.758251 TGCTCGTCGGCCATGGTG 62.758 66.667 14.67 6.70 0.00 4.17
1235 1486 5.878406 TCAAGAAGAAGAAGAGAACACCT 57.122 39.130 0.00 0.00 0.00 4.00
1240 1491 5.859114 CGAACGATCAAGAAGAAGAAGAGAA 59.141 40.000 0.00 0.00 0.00 2.87
1258 1509 0.179067 AACCCAAAGTGAGCGAACGA 60.179 50.000 0.00 0.00 0.00 3.85
1261 1512 0.941542 CGAAACCCAAAGTGAGCGAA 59.058 50.000 0.00 0.00 0.00 4.70
1293 1547 3.706373 ATCCCTGCAGCCGACGTT 61.706 61.111 8.66 0.00 0.00 3.99
1294 1548 4.457496 CATCCCTGCAGCCGACGT 62.457 66.667 8.66 0.00 0.00 4.34
1296 1550 4.864334 CCCATCCCTGCAGCCGAC 62.864 72.222 8.66 0.00 0.00 4.79
1298 1552 4.559063 CTCCCATCCCTGCAGCCG 62.559 72.222 8.66 0.00 0.00 5.52
1299 1553 4.201122 CCTCCCATCCCTGCAGCC 62.201 72.222 8.66 0.00 0.00 4.85
1314 1581 4.316823 TCCTCCACGCCCAGACCT 62.317 66.667 0.00 0.00 0.00 3.85
1317 1584 2.680352 GTCTCCTCCACGCCCAGA 60.680 66.667 0.00 0.00 0.00 3.86
1479 1746 1.009389 CGAACTCCGTCTTGAGGTGC 61.009 60.000 0.00 0.00 36.66 5.01
1597 1864 4.539881 GAGCTCGACGAGGACGGC 62.540 72.222 25.31 12.13 45.02 5.68
2003 2282 0.248949 GATCACCTCGCCGAAGTACC 60.249 60.000 0.00 0.00 0.00 3.34
2327 2610 9.991388 GGACGTAAGATAAGCAGTAGATAATAG 57.009 37.037 0.00 0.00 43.62 1.73
2328 2611 9.511272 TGGACGTAAGATAAGCAGTAGATAATA 57.489 33.333 0.00 0.00 43.62 0.98
2414 2702 8.519526 ACTCGATAAAATTTTGTTGAGCCATTA 58.480 29.630 30.34 4.87 41.09 1.90
2416 2704 6.924111 ACTCGATAAAATTTTGTTGAGCCAT 58.076 32.000 30.34 17.21 41.09 4.40
2428 2716 7.360946 CCTTCCAAGAAACGACTCGATAAAATT 60.361 37.037 5.20 0.00 0.00 1.82
2429 2717 6.092259 CCTTCCAAGAAACGACTCGATAAAAT 59.908 38.462 5.20 0.00 0.00 1.82
2432 2720 4.021719 ACCTTCCAAGAAACGACTCGATAA 60.022 41.667 5.20 0.00 0.00 1.75
2436 2724 2.150397 ACCTTCCAAGAAACGACTCG 57.850 50.000 0.00 0.00 0.00 4.18
2446 2734 0.387622 CGTGCATGCAACCTTCCAAG 60.388 55.000 24.58 1.72 0.00 3.61
2450 2738 1.468054 GGATTCGTGCATGCAACCTTC 60.468 52.381 24.58 16.48 0.00 3.46
2464 2752 2.744787 GCATAGTTGTGCTGGATTCG 57.255 50.000 0.00 0.00 41.82 3.34
2482 2770 4.597079 TGTTTTCGACAAATGAGTTCAGC 58.403 39.130 0.00 0.00 34.69 4.26
2486 2774 6.263168 AGGAATCTGTTTTCGACAAATGAGTT 59.737 34.615 0.00 0.00 37.93 3.01
2489 2777 5.762711 TGAGGAATCTGTTTTCGACAAATGA 59.237 36.000 0.00 0.00 37.93 2.57
2494 2782 4.956085 TCTTGAGGAATCTGTTTTCGACA 58.044 39.130 0.00 0.00 36.65 4.35
2498 2786 8.159344 TCTCTTTTCTTGAGGAATCTGTTTTC 57.841 34.615 0.00 0.00 33.53 2.29
2505 2793 7.223777 CGTAGGAATCTCTTTTCTTGAGGAATC 59.776 40.741 0.00 0.00 33.53 2.52
2506 2794 7.044798 CGTAGGAATCTCTTTTCTTGAGGAAT 58.955 38.462 0.00 0.00 33.53 3.01
2507 2795 6.014499 ACGTAGGAATCTCTTTTCTTGAGGAA 60.014 38.462 0.00 0.00 32.78 3.36
2508 2796 5.480772 ACGTAGGAATCTCTTTTCTTGAGGA 59.519 40.000 0.00 0.00 32.78 3.71
2509 2797 5.578727 CACGTAGGAATCTCTTTTCTTGAGG 59.421 44.000 0.00 0.00 32.78 3.86
2510 2798 5.062809 GCACGTAGGAATCTCTTTTCTTGAG 59.937 44.000 0.00 0.00 0.00 3.02
2511 2799 4.929808 GCACGTAGGAATCTCTTTTCTTGA 59.070 41.667 0.00 0.00 0.00 3.02
2512 2800 4.690748 TGCACGTAGGAATCTCTTTTCTTG 59.309 41.667 0.00 0.00 0.00 3.02
2513 2801 4.691216 GTGCACGTAGGAATCTCTTTTCTT 59.309 41.667 0.00 0.00 0.00 2.52
2514 2802 4.246458 GTGCACGTAGGAATCTCTTTTCT 58.754 43.478 0.00 0.00 0.00 2.52
2515 2803 3.060895 CGTGCACGTAGGAATCTCTTTTC 59.939 47.826 30.50 0.00 34.11 2.29
2516 2804 2.993899 CGTGCACGTAGGAATCTCTTTT 59.006 45.455 30.50 0.00 34.11 2.27
2517 2805 2.607187 CGTGCACGTAGGAATCTCTTT 58.393 47.619 30.50 0.00 34.11 2.52
2518 2806 1.135083 CCGTGCACGTAGGAATCTCTT 60.135 52.381 34.81 0.00 37.74 2.85
2519 2807 0.456221 CCGTGCACGTAGGAATCTCT 59.544 55.000 34.81 0.00 37.74 3.10
2520 2808 0.527817 CCCGTGCACGTAGGAATCTC 60.528 60.000 34.81 0.00 37.74 2.75
2521 2809 0.968901 TCCCGTGCACGTAGGAATCT 60.969 55.000 34.81 0.00 37.74 2.40
2522 2810 0.527817 CTCCCGTGCACGTAGGAATC 60.528 60.000 34.81 0.00 37.74 2.52
2523 2811 1.515954 CTCCCGTGCACGTAGGAAT 59.484 57.895 34.81 0.00 37.74 3.01
2524 2812 2.642254 CCTCCCGTGCACGTAGGAA 61.642 63.158 36.41 21.46 40.77 3.36
2525 2813 3.066190 CCTCCCGTGCACGTAGGA 61.066 66.667 36.41 32.40 40.77 2.94
2526 2814 3.352338 GACCTCCCGTGCACGTAGG 62.352 68.421 37.00 37.00 42.67 3.18
2527 2815 2.181021 GACCTCCCGTGCACGTAG 59.819 66.667 34.81 28.98 37.74 3.51
2528 2816 3.376078 GGACCTCCCGTGCACGTA 61.376 66.667 34.81 22.43 37.74 3.57
2540 2828 2.754658 CGGTAGAGGCACGGACCT 60.755 66.667 0.00 0.00 45.04 3.85
2541 2829 4.509737 GCGGTAGAGGCACGGACC 62.510 72.222 0.00 0.00 0.00 4.46
2542 2830 4.849329 CGCGGTAGAGGCACGGAC 62.849 72.222 0.00 0.00 0.00 4.79
2545 2833 4.430765 AACCGCGGTAGAGGCACG 62.431 66.667 34.44 0.00 41.37 5.34
2546 2834 2.813908 CAACCGCGGTAGAGGCAC 60.814 66.667 34.44 0.00 41.37 5.01
2547 2835 2.386064 AAACAACCGCGGTAGAGGCA 62.386 55.000 34.44 0.00 41.37 4.75
2548 2836 1.632948 GAAACAACCGCGGTAGAGGC 61.633 60.000 34.44 17.58 41.37 4.70
2549 2837 1.017701 GGAAACAACCGCGGTAGAGG 61.018 60.000 34.44 22.86 43.46 3.69
2550 2838 1.017701 GGGAAACAACCGCGGTAGAG 61.018 60.000 34.44 25.74 0.00 2.43
2551 2839 1.004679 GGGAAACAACCGCGGTAGA 60.005 57.895 34.44 0.00 0.00 2.59
2552 2840 0.604511 AAGGGAAACAACCGCGGTAG 60.605 55.000 34.44 4.96 0.00 3.18
2553 2841 0.885596 CAAGGGAAACAACCGCGGTA 60.886 55.000 34.44 0.00 0.00 4.02
2554 2842 2.190841 CAAGGGAAACAACCGCGGT 61.191 57.895 28.70 28.70 0.00 5.68
2555 2843 1.448922 TTCAAGGGAAACAACCGCGG 61.449 55.000 26.86 26.86 0.00 6.46
2556 2844 0.040425 CTTCAAGGGAAACAACCGCG 60.040 55.000 0.00 0.00 31.35 6.46
2557 2845 1.314730 TCTTCAAGGGAAACAACCGC 58.685 50.000 0.00 0.00 31.35 5.68
2558 2846 2.488153 GGATCTTCAAGGGAAACAACCG 59.512 50.000 0.00 0.00 31.35 4.44
2559 2847 2.488153 CGGATCTTCAAGGGAAACAACC 59.512 50.000 0.00 0.00 31.35 3.77
2560 2848 3.408634 TCGGATCTTCAAGGGAAACAAC 58.591 45.455 0.00 0.00 31.35 3.32
2561 2849 3.072476 ACTCGGATCTTCAAGGGAAACAA 59.928 43.478 0.00 0.00 31.35 2.83
2562 2850 2.637872 ACTCGGATCTTCAAGGGAAACA 59.362 45.455 0.00 0.00 31.35 2.83
2563 2851 3.003480 CACTCGGATCTTCAAGGGAAAC 58.997 50.000 0.00 0.00 31.35 2.78
2564 2852 2.615493 GCACTCGGATCTTCAAGGGAAA 60.615 50.000 0.00 0.00 31.35 3.13
2565 2853 1.066143 GCACTCGGATCTTCAAGGGAA 60.066 52.381 0.00 0.00 0.00 3.97
2566 2854 0.537188 GCACTCGGATCTTCAAGGGA 59.463 55.000 0.00 0.00 0.00 4.20
2567 2855 0.250234 TGCACTCGGATCTTCAAGGG 59.750 55.000 0.00 0.00 0.00 3.95
2568 2856 1.938577 CATGCACTCGGATCTTCAAGG 59.061 52.381 0.00 0.00 0.00 3.61
2569 2857 1.329906 GCATGCACTCGGATCTTCAAG 59.670 52.381 14.21 0.00 0.00 3.02
2570 2858 1.338960 TGCATGCACTCGGATCTTCAA 60.339 47.619 18.46 0.00 0.00 2.69
2571 2859 0.249955 TGCATGCACTCGGATCTTCA 59.750 50.000 18.46 0.00 0.00 3.02
2572 2860 1.372582 TTGCATGCACTCGGATCTTC 58.627 50.000 22.58 0.00 0.00 2.87
2573 2861 1.470098 GTTTGCATGCACTCGGATCTT 59.530 47.619 22.58 0.00 0.00 2.40
2574 2862 1.089920 GTTTGCATGCACTCGGATCT 58.910 50.000 22.58 0.00 0.00 2.75
2575 2863 0.247814 CGTTTGCATGCACTCGGATC 60.248 55.000 22.58 3.53 0.00 3.36
2576 2864 1.796151 CGTTTGCATGCACTCGGAT 59.204 52.632 22.58 0.00 0.00 4.18
2577 2865 2.965147 GCGTTTGCATGCACTCGGA 61.965 57.895 30.78 13.86 42.15 4.55
2578 2866 2.502510 GCGTTTGCATGCACTCGG 60.503 61.111 30.78 19.05 42.15 4.63
2579 2867 2.462255 AAGGCGTTTGCATGCACTCG 62.462 55.000 28.03 28.03 45.35 4.18
2580 2868 0.730494 GAAGGCGTTTGCATGCACTC 60.730 55.000 22.58 15.11 45.35 3.51
2581 2869 1.286880 GAAGGCGTTTGCATGCACT 59.713 52.632 22.58 11.21 45.35 4.40
2582 2870 2.082366 CGAAGGCGTTTGCATGCAC 61.082 57.895 22.58 9.28 45.35 4.57
2583 2871 2.254951 CGAAGGCGTTTGCATGCA 59.745 55.556 18.46 18.46 45.35 3.96
2584 2872 3.174573 GCGAAGGCGTTTGCATGC 61.175 61.111 23.25 11.82 45.35 4.06
2585 2873 1.798725 CAGCGAAGGCGTTTGCATG 60.799 57.895 28.12 19.83 44.66 4.06
2586 2874 0.953471 TACAGCGAAGGCGTTTGCAT 60.953 50.000 28.12 19.46 44.66 3.96
2587 2875 0.953471 ATACAGCGAAGGCGTTTGCA 60.953 50.000 28.12 12.20 44.66 4.08
2588 2876 0.521242 CATACAGCGAAGGCGTTTGC 60.521 55.000 21.22 21.22 46.35 3.68
2589 2877 0.521242 GCATACAGCGAAGGCGTTTG 60.521 55.000 1.83 1.83 46.35 2.93
2590 2878 1.794222 GCATACAGCGAAGGCGTTT 59.206 52.632 0.00 0.00 46.35 3.60
2591 2879 3.486263 GCATACAGCGAAGGCGTT 58.514 55.556 0.00 0.00 46.35 4.84
2600 2888 4.553815 CGTACTATGATACACGCATACAGC 59.446 45.833 0.00 0.00 40.87 4.40
2601 2889 5.686834 ACGTACTATGATACACGCATACAG 58.313 41.667 0.00 0.00 37.92 2.74
2602 2890 5.678132 ACGTACTATGATACACGCATACA 57.322 39.130 0.00 0.00 37.92 2.29
2603 2891 8.382875 TGTATACGTACTATGATACACGCATAC 58.617 37.037 0.00 13.28 41.05 2.39
2604 2892 8.477984 TGTATACGTACTATGATACACGCATA 57.522 34.615 0.00 0.00 37.92 3.14
2605 2893 7.368480 TGTATACGTACTATGATACACGCAT 57.632 36.000 0.00 0.00 37.92 4.73
2606 2894 6.783892 TGTATACGTACTATGATACACGCA 57.216 37.500 0.00 0.00 37.92 5.24
2607 2895 7.458677 TCATGTATACGTACTATGATACACGC 58.541 38.462 8.38 0.00 37.54 5.34
2608 2896 9.983804 AATCATGTATACGTACTATGATACACG 57.016 33.333 21.54 10.79 37.68 4.49
2652 2940 4.025563 CACAAAAAGTGGTCAACATGCATG 60.026 41.667 25.09 25.09 44.69 4.06
2653 2941 4.121317 CACAAAAAGTGGTCAACATGCAT 58.879 39.130 0.00 0.00 44.69 3.96
2654 2942 3.519579 CACAAAAAGTGGTCAACATGCA 58.480 40.909 0.00 0.00 44.69 3.96
2681 2970 0.905357 TCTAGACCTCTGCCAAAGCC 59.095 55.000 0.00 0.00 38.69 4.35
2717 3012 2.260154 TGCGTTGCATGGTGGAGTG 61.260 57.895 0.00 0.00 31.71 3.51
2722 3017 2.050168 GTGGTGCGTTGCATGGTG 60.050 61.111 0.00 0.00 41.91 4.17
2864 3384 5.395682 TCTGGCTTCATCCATTTCAAAAG 57.604 39.130 0.00 0.00 35.22 2.27
2881 3401 8.798153 CAAATTTTACTCGTTTGAATATCTGGC 58.202 33.333 0.00 0.00 35.43 4.85
2888 3408 9.965748 CAAAACACAAATTTTACTCGTTTGAAT 57.034 25.926 4.31 0.00 36.58 2.57
3019 3539 9.130661 TCCAAAAGACTTATTTCACTCATTCAA 57.869 29.630 0.00 0.00 0.00 2.69
3020 3540 8.690203 TCCAAAAGACTTATTTCACTCATTCA 57.310 30.769 0.00 0.00 0.00 2.57
3044 3564 8.733857 AATCGAAAAACAGATTTCACTCATTC 57.266 30.769 0.00 0.00 38.87 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.