Multiple sequence alignment - TraesCS4A01G023200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G023200 chr4A 100.000 5229 0 0 1 5229 16496744 16501972 0.000000e+00 9657.0
1 TraesCS4A01G023200 chr4A 98.636 220 2 1 682 900 16489421 16489202 6.350000e-104 388.0
2 TraesCS4A01G023200 chr4B 91.684 1467 85 19 1795 3231 562938439 562936980 0.000000e+00 1999.0
3 TraesCS4A01G023200 chr4B 88.679 901 64 16 3673 4559 562933766 562932890 0.000000e+00 1064.0
4 TraesCS4A01G023200 chr4B 90.244 820 55 10 901 1710 562939305 562938501 0.000000e+00 1048.0
5 TraesCS4A01G023200 chr4B 86.250 960 65 31 1 900 653537197 653538149 0.000000e+00 979.0
6 TraesCS4A01G023200 chr4B 89.409 491 27 5 4705 5191 562932790 562932321 3.490000e-166 595.0
7 TraesCS4A01G023200 chr4B 93.211 383 18 3 3238 3620 562934218 562933844 1.640000e-154 556.0
8 TraesCS4A01G023200 chr4B 93.939 132 5 1 5060 5191 127537697 127537569 4.130000e-46 196.0
9 TraesCS4A01G023200 chr2A 99.122 911 6 2 1 909 100660114 100659204 0.000000e+00 1637.0
10 TraesCS4A01G023200 chr2A 95.080 935 17 9 1 907 623551147 623550214 0.000000e+00 1445.0
11 TraesCS4A01G023200 chr2A 95.455 132 3 1 5060 5191 317993834 317993706 1.910000e-49 207.0
12 TraesCS4A01G023200 chr2A 93.939 132 5 1 5060 5191 734860142 734860014 4.130000e-46 196.0
13 TraesCS4A01G023200 chr2A 96.667 60 1 1 3617 3675 307444218 307444159 1.200000e-16 99.0
14 TraesCS4A01G023200 chr7A 99.002 902 8 1 1 901 67658850 67657949 0.000000e+00 1615.0
15 TraesCS4A01G023200 chr7A 95.896 926 12 7 1 900 353827673 353826748 0.000000e+00 1476.0
16 TraesCS4A01G023200 chr7A 91.549 142 8 2 5060 5201 115554078 115553941 5.340000e-45 193.0
17 TraesCS4A01G023200 chr7A 93.182 132 6 1 5060 5191 732693437 732693565 1.920000e-44 191.0
18 TraesCS4A01G023200 chr4D 92.636 1032 60 12 2145 3165 450155653 450154627 0.000000e+00 1471.0
19 TraesCS4A01G023200 chr4D 85.915 1065 76 42 3673 4696 450154012 450152981 0.000000e+00 1068.0
20 TraesCS4A01G023200 chr4D 89.448 815 47 15 905 1708 450157028 450156242 0.000000e+00 992.0
21 TraesCS4A01G023200 chr4D 93.939 429 13 4 3157 3585 450154528 450154113 2.050000e-178 636.0
22 TraesCS4A01G023200 chr4D 90.028 361 30 3 1797 2151 450156172 450155812 3.690000e-126 462.0
23 TraesCS4A01G023200 chr4D 92.278 259 15 3 4723 4978 450152982 450152726 3.850000e-96 363.0
24 TraesCS4A01G023200 chr4D 90.909 77 7 0 3706 3782 95881666 95881742 2.580000e-18 104.0
25 TraesCS4A01G023200 chr1A 93.413 926 13 8 1 900 376719010 376719913 0.000000e+00 1328.0
26 TraesCS4A01G023200 chr1A 94.800 250 10 3 656 903 323645955 323645707 2.280000e-103 387.0
27 TraesCS4A01G023200 chr1A 96.943 229 6 1 682 909 376713117 376712889 2.950000e-102 383.0
28 TraesCS4A01G023200 chr2B 86.025 966 68 32 1 907 578204809 578203852 0.000000e+00 974.0
29 TraesCS4A01G023200 chr2B 94.444 162 6 1 5030 5191 698590113 698590271 4.040000e-61 246.0
30 TraesCS4A01G023200 chr2B 92.208 77 6 0 3706 3782 88429928 88430004 5.540000e-20 110.0
31 TraesCS4A01G023200 chr2B 89.610 77 7 1 3618 3693 751258352 751258276 4.310000e-16 97.1
32 TraesCS4A01G023200 chr2B 97.778 45 1 0 1721 1765 273055824 273055780 1.560000e-10 78.7
33 TraesCS4A01G023200 chr7B 88.082 730 48 25 203 902 628762533 628763253 0.000000e+00 830.0
34 TraesCS4A01G023200 chr7B 95.600 250 7 3 656 902 317226583 317226831 1.060000e-106 398.0
35 TraesCS4A01G023200 chr7B 95.175 228 11 0 1 228 85811930 85812157 1.380000e-95 361.0
36 TraesCS4A01G023200 chr7B 95.833 48 1 1 1726 1772 403564372 403564419 5.620000e-10 76.8
37 TraesCS4A01G023200 chr7B 91.071 56 2 3 1726 1779 732481386 732481440 7.260000e-09 73.1
38 TraesCS4A01G023200 chr1B 86.813 728 59 19 203 900 186184448 186183728 0.000000e+00 778.0
39 TraesCS4A01G023200 chr1B 96.491 228 8 0 1 228 483122676 483122449 1.370000e-100 377.0
40 TraesCS4A01G023200 chr1B 96.053 228 7 1 3 228 186184685 186184458 2.300000e-98 370.0
41 TraesCS4A01G023200 chr1B 95.161 62 1 2 3618 3678 273653481 273653421 4.310000e-16 97.1
42 TraesCS4A01G023200 chr5B 89.978 449 30 6 203 651 477523887 477524320 2.730000e-157 566.0
43 TraesCS4A01G023200 chr5B 95.614 228 10 0 1 228 503109287 503109060 2.980000e-97 366.0
44 TraesCS4A01G023200 chr5B 93.182 132 6 1 5060 5191 547255560 547255688 1.920000e-44 191.0
45 TraesCS4A01G023200 chr5B 89.041 73 6 2 3617 3688 533382129 533382200 7.210000e-14 89.8
46 TraesCS4A01G023200 chr3B 94.375 160 6 1 5030 5189 727506364 727506208 5.230000e-60 243.0
47 TraesCS4A01G023200 chr3B 90.000 80 8 0 3706 3785 180277634 180277555 2.580000e-18 104.0
48 TraesCS4A01G023200 chr3B 97.778 45 1 0 1725 1769 396276662 396276618 1.560000e-10 78.7
49 TraesCS4A01G023200 chr3B 94.231 52 2 1 1722 1772 680423294 680423345 1.560000e-10 78.7
50 TraesCS4A01G023200 chr6A 93.151 73 5 0 3706 3778 260432802 260432730 1.990000e-19 108.0
51 TraesCS4A01G023200 chr6A 92.537 67 2 3 3618 3683 39136710 39136774 5.580000e-15 93.5
52 TraesCS4A01G023200 chr3D 88.506 87 10 0 3688 3774 5879359 5879445 7.160000e-19 106.0
53 TraesCS4A01G023200 chr3D 93.750 64 3 1 3618 3680 148248115 148248052 1.550000e-15 95.3
54 TraesCS4A01G023200 chr6D 90.909 77 7 0 3706 3782 195482551 195482627 2.580000e-18 104.0
55 TraesCS4A01G023200 chr6D 91.304 69 4 2 3618 3684 392278684 392278752 5.580000e-15 93.5
56 TraesCS4A01G023200 chr6B 95.385 65 3 0 3706 3770 384817709 384817773 2.580000e-18 104.0
57 TraesCS4A01G023200 chr2D 93.651 63 2 2 3618 3679 637382195 637382256 5.580000e-15 93.5
58 TraesCS4A01G023200 chr2D 89.189 74 7 1 3618 3690 194458724 194458797 2.010000e-14 91.6
59 TraesCS4A01G023200 chr2D 97.917 48 0 1 1726 1772 299891019 299891066 1.210000e-11 82.4
60 TraesCS4A01G023200 chrUn 97.778 45 1 0 1725 1769 16904523 16904479 1.560000e-10 78.7
61 TraesCS4A01G023200 chrUn 95.833 48 1 1 1726 1772 478179661 478179614 5.620000e-10 76.8
62 TraesCS4A01G023200 chr1D 95.833 48 1 1 1726 1772 110052472 110052519 5.620000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G023200 chr4A 16496744 16501972 5228 False 9657.0 9657 100.000000 1 5229 1 chr4A.!!$F1 5228
1 TraesCS4A01G023200 chr4B 562932321 562939305 6984 True 1052.4 1999 90.645400 901 5191 5 chr4B.!!$R2 4290
2 TraesCS4A01G023200 chr4B 653537197 653538149 952 False 979.0 979 86.250000 1 900 1 chr4B.!!$F1 899
3 TraesCS4A01G023200 chr2A 100659204 100660114 910 True 1637.0 1637 99.122000 1 909 1 chr2A.!!$R1 908
4 TraesCS4A01G023200 chr2A 623550214 623551147 933 True 1445.0 1445 95.080000 1 907 1 chr2A.!!$R4 906
5 TraesCS4A01G023200 chr7A 67657949 67658850 901 True 1615.0 1615 99.002000 1 901 1 chr7A.!!$R1 900
6 TraesCS4A01G023200 chr7A 353826748 353827673 925 True 1476.0 1476 95.896000 1 900 1 chr7A.!!$R3 899
7 TraesCS4A01G023200 chr4D 450152726 450157028 4302 True 832.0 1471 90.707333 905 4978 6 chr4D.!!$R1 4073
8 TraesCS4A01G023200 chr1A 376719010 376719913 903 False 1328.0 1328 93.413000 1 900 1 chr1A.!!$F1 899
9 TraesCS4A01G023200 chr2B 578203852 578204809 957 True 974.0 974 86.025000 1 907 1 chr2B.!!$R2 906
10 TraesCS4A01G023200 chr7B 628762533 628763253 720 False 830.0 830 88.082000 203 902 1 chr7B.!!$F4 699
11 TraesCS4A01G023200 chr1B 186183728 186184685 957 True 574.0 778 91.433000 3 900 2 chr1B.!!$R3 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 874 1.474330 TGTCGAGCTCTGATTGGCTA 58.526 50.0 12.85 0.0 39.05 3.93 F
1409 1516 0.108041 TTCGGTGGCGTTAAGGGATC 60.108 55.0 0.00 0.0 0.00 3.36 F
1411 1518 0.179056 CGGTGGCGTTAAGGGATCAT 60.179 55.0 0.00 0.0 0.00 2.45 F
2643 2963 0.327480 AGGGTCCTGCCATGTGGATA 60.327 55.0 2.55 0.0 39.65 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2771 3095 0.036010 TGCAAGACTGGAAGCCTAGC 60.036 55.000 0.00 0.00 37.60 3.42 R
2874 3198 2.468868 TTCTGCCCCAGGGAAAGCA 61.469 57.895 7.25 7.48 37.50 3.91 R
2978 3302 2.742053 CCCATTTCTGTAGTGTCCAACG 59.258 50.000 0.00 0.00 0.00 4.10 R
4316 7540 0.392863 AGGATAAGTGCGCACATGCA 60.393 50.000 39.21 22.13 43.95 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
784 874 1.474330 TGTCGAGCTCTGATTGGCTA 58.526 50.000 12.85 0.00 39.05 3.93
831 921 5.220854 GCAAGTTGTGTGACTCAATAGTTGT 60.221 40.000 4.48 0.00 35.56 3.32
924 1014 6.009115 AGCAAAAACCTCCTATAAAACACG 57.991 37.500 0.00 0.00 0.00 4.49
991 1082 2.125106 CGGCGGAAAGGGGAGAAG 60.125 66.667 0.00 0.00 0.00 2.85
1027 1120 2.027625 CACGTCGGCCAGTTCTTCC 61.028 63.158 2.24 0.00 0.00 3.46
1099 1192 0.869880 CGACATCATCGCCGTAAGCA 60.870 55.000 0.00 0.00 45.52 3.91
1106 1199 3.463585 CGCCGTAAGCACCCCCTA 61.464 66.667 0.00 0.00 44.04 3.53
1129 1222 2.656069 CCGCCCCTTCCTCGAGAAA 61.656 63.158 15.71 0.00 32.88 2.52
1142 1235 1.153429 GAGAAATCCCCACGGACGG 60.153 63.158 0.00 0.00 42.48 4.79
1204 1305 1.254975 CCCGTTTGTTTGGGGATCCC 61.255 60.000 23.95 23.95 44.10 3.85
1219 1320 0.753111 ATCCCAATTTCCGCTGGAGC 60.753 55.000 0.00 0.00 34.35 4.70
1241 1342 1.641677 CGGGGATTCACGAATTCGC 59.358 57.895 27.03 10.59 44.43 4.70
1274 1375 0.830444 ACAGTCCCTGTCGGCTTGTA 60.830 55.000 0.00 0.00 41.21 2.41
1275 1376 0.108615 CAGTCCCTGTCGGCTTGTAG 60.109 60.000 0.00 0.00 0.00 2.74
1288 1389 1.927895 CTTGTAGGTTCTAGCGCCAG 58.072 55.000 2.29 0.00 0.00 4.85
1336 1443 0.322098 TGTGTTTGGGCGGAATCGAT 60.322 50.000 0.00 0.00 39.00 3.59
1345 1452 0.875908 GCGGAATCGATACTGCTGCA 60.876 55.000 0.88 0.88 39.00 4.41
1346 1453 1.788258 CGGAATCGATACTGCTGCAT 58.212 50.000 1.31 0.00 39.00 3.96
1362 1469 3.726190 GCTGCATGCTTTACTCTTCGTTC 60.726 47.826 20.33 0.00 38.95 3.95
1373 1480 6.807708 TTACTCTTCGTTCATCTAAATCGC 57.192 37.500 0.00 0.00 0.00 4.58
1381 1488 4.027295 CGTTCATCTAAATCGCTGTCTGTC 60.027 45.833 0.00 0.00 0.00 3.51
1408 1515 0.325602 TTTCGGTGGCGTTAAGGGAT 59.674 50.000 0.00 0.00 0.00 3.85
1409 1516 0.108041 TTCGGTGGCGTTAAGGGATC 60.108 55.000 0.00 0.00 0.00 3.36
1410 1517 1.219664 CGGTGGCGTTAAGGGATCA 59.780 57.895 0.00 0.00 0.00 2.92
1411 1518 0.179056 CGGTGGCGTTAAGGGATCAT 60.179 55.000 0.00 0.00 0.00 2.45
1473 1580 7.633789 ACTGTACTTGATTACTCAATTCCCAT 58.366 34.615 0.00 0.00 40.52 4.00
1474 1581 7.554118 ACTGTACTTGATTACTCAATTCCCATG 59.446 37.037 0.00 0.00 40.52 3.66
1475 1582 5.841957 ACTTGATTACTCAATTCCCATGC 57.158 39.130 0.00 0.00 40.52 4.06
1476 1583 4.336433 ACTTGATTACTCAATTCCCATGCG 59.664 41.667 0.00 0.00 40.52 4.73
1566 1673 2.676750 CGAATTTCCGGGATGTGACTGA 60.677 50.000 0.00 0.00 0.00 3.41
1572 1679 3.104512 TCCGGGATGTGACTGAGTTTAT 58.895 45.455 0.00 0.00 0.00 1.40
1573 1680 3.132289 TCCGGGATGTGACTGAGTTTATC 59.868 47.826 0.00 0.00 0.00 1.75
1574 1681 3.458189 CGGGATGTGACTGAGTTTATCC 58.542 50.000 12.46 12.46 34.69 2.59
1598 1705 1.068333 CAGAAGCATTTGGACAACCCG 60.068 52.381 0.00 0.00 37.93 5.28
1599 1706 0.958822 GAAGCATTTGGACAACCCGT 59.041 50.000 0.00 0.00 37.93 5.28
1600 1707 0.673437 AAGCATTTGGACAACCCGTG 59.327 50.000 0.00 0.00 37.93 4.94
1601 1708 1.372872 GCATTTGGACAACCCGTGC 60.373 57.895 0.00 0.00 37.93 5.34
1602 1709 1.288752 CATTTGGACAACCCGTGCC 59.711 57.895 0.00 0.00 37.93 5.01
1603 1710 1.152652 ATTTGGACAACCCGTGCCA 60.153 52.632 0.00 0.00 37.93 4.92
1727 1844 3.881795 TCGTGAGACGAGTCTTTGTTAC 58.118 45.455 7.23 2.42 46.73 2.50
1728 1845 3.562973 TCGTGAGACGAGTCTTTGTTACT 59.437 43.478 7.23 0.00 46.73 2.24
1729 1846 3.907194 CGTGAGACGAGTCTTTGTTACTC 59.093 47.826 7.23 0.00 46.05 2.59
1730 1847 4.228317 GTGAGACGAGTCTTTGTTACTCC 58.772 47.826 7.23 0.00 40.24 3.85
1731 1848 3.255149 TGAGACGAGTCTTTGTTACTCCC 59.745 47.826 7.23 0.00 40.24 4.30
1732 1849 3.498334 AGACGAGTCTTTGTTACTCCCT 58.502 45.455 0.00 0.00 40.24 4.20
1733 1850 3.506844 AGACGAGTCTTTGTTACTCCCTC 59.493 47.826 0.00 0.00 40.24 4.30
1734 1851 3.498334 ACGAGTCTTTGTTACTCCCTCT 58.502 45.455 0.00 0.00 40.24 3.69
1735 1852 3.256136 ACGAGTCTTTGTTACTCCCTCTG 59.744 47.826 0.00 0.00 40.24 3.35
1736 1853 3.256136 CGAGTCTTTGTTACTCCCTCTGT 59.744 47.826 0.00 0.00 40.24 3.41
1737 1854 4.458295 CGAGTCTTTGTTACTCCCTCTGTA 59.542 45.833 0.00 0.00 40.24 2.74
1738 1855 5.048224 CGAGTCTTTGTTACTCCCTCTGTAA 60.048 44.000 0.00 0.00 40.24 2.41
1739 1856 6.099159 AGTCTTTGTTACTCCCTCTGTAAC 57.901 41.667 9.11 9.11 45.72 2.50
1752 1869 8.794553 ACTCCCTCTGTAACATAATATAAGACG 58.205 37.037 0.00 0.00 0.00 4.18
1753 1870 8.701908 TCCCTCTGTAACATAATATAAGACGT 57.298 34.615 0.00 0.00 0.00 4.34
1754 1871 9.139734 TCCCTCTGTAACATAATATAAGACGTT 57.860 33.333 0.00 0.00 0.00 3.99
1755 1872 9.760077 CCCTCTGTAACATAATATAAGACGTTT 57.240 33.333 0.00 0.00 0.00 3.60
1774 1891 2.638480 TTTTGACACTGTCAGGAGGG 57.362 50.000 11.67 0.00 43.69 4.30
1775 1892 1.801242 TTTGACACTGTCAGGAGGGA 58.199 50.000 11.67 0.00 43.69 4.20
1776 1893 1.342074 TTGACACTGTCAGGAGGGAG 58.658 55.000 11.67 0.00 43.69 4.30
1792 1909 4.159135 GGAGGGAGTATTTCGTTGACTGTA 59.841 45.833 0.00 0.00 0.00 2.74
1793 1910 5.069501 AGGGAGTATTTCGTTGACTGTAC 57.930 43.478 0.00 0.00 0.00 2.90
1869 2010 2.084546 GTTGAATCCTTTCCACCCTCG 58.915 52.381 0.00 0.00 0.00 4.63
1870 2011 1.358152 TGAATCCTTTCCACCCTCGT 58.642 50.000 0.00 0.00 0.00 4.18
1873 2014 2.198304 ATCCTTTCCACCCTCGTGCC 62.198 60.000 0.00 0.00 38.79 5.01
1894 2035 5.475564 TGCCACTATATATGTGAAGCGTAGA 59.524 40.000 13.58 0.00 37.60 2.59
1896 2037 6.473778 GCCACTATATATGTGAAGCGTAGATG 59.526 42.308 13.58 0.00 37.60 2.90
1899 2040 9.066939 CACTATATATGTGAAGCGTAGATGAAC 57.933 37.037 8.69 0.00 37.60 3.18
1900 2041 8.244802 ACTATATATGTGAAGCGTAGATGAACC 58.755 37.037 0.00 0.00 0.00 3.62
1901 2042 3.895232 ATGTGAAGCGTAGATGAACCT 57.105 42.857 0.00 0.00 0.00 3.50
1902 2043 3.678056 TGTGAAGCGTAGATGAACCTT 57.322 42.857 0.00 0.00 0.00 3.50
1903 2044 4.002906 TGTGAAGCGTAGATGAACCTTT 57.997 40.909 0.00 0.00 0.00 3.11
1974 2121 7.746475 GCACTCATTTGTGTTTGTCTAATCTAC 59.254 37.037 0.00 0.00 39.89 2.59
1984 2131 9.565213 GTGTTTGTCTAATCTACTATTGTACGT 57.435 33.333 0.00 0.00 0.00 3.57
1985 2132 9.563898 TGTTTGTCTAATCTACTATTGTACGTG 57.436 33.333 0.00 0.00 0.00 4.49
2108 2255 2.978824 CCCGAGGATGTCAACCGT 59.021 61.111 0.00 0.00 0.00 4.83
2142 2289 3.633525 GCTTGAAGGTGATGCATCCATTA 59.366 43.478 23.67 1.98 0.00 1.90
2144 2291 5.769367 CTTGAAGGTGATGCATCCATTATG 58.231 41.667 23.67 8.66 38.74 1.90
2146 2459 5.939447 TGAAGGTGATGCATCCATTATGTA 58.061 37.500 23.67 0.00 37.93 2.29
2246 2562 5.107182 CCAAGATATGAGTGTTCATCGCATC 60.107 44.000 0.00 0.00 42.97 3.91
2255 2571 4.940046 AGTGTTCATCGCATCTTCTGAAAT 59.060 37.500 0.00 0.00 30.06 2.17
2256 2572 6.108687 AGTGTTCATCGCATCTTCTGAAATA 58.891 36.000 0.00 0.00 30.06 1.40
2352 2670 8.140677 TGTTCCACATGTTCATTTTGATTTTC 57.859 30.769 0.00 0.00 0.00 2.29
2420 2739 7.051000 AGTGCCTTTTCTTAGAATCTATCACC 58.949 38.462 0.00 0.00 0.00 4.02
2476 2795 1.536940 TGACTGTCATGGCATGTTGG 58.463 50.000 25.62 17.78 0.00 3.77
2477 2796 1.073603 TGACTGTCATGGCATGTTGGA 59.926 47.619 25.62 4.90 0.00 3.53
2506 2825 8.078596 GCTGTAGATGTCTTGAATTTTGAGTTT 58.921 33.333 0.00 0.00 0.00 2.66
2540 2860 8.198807 TCTTTTATGGATAGATCAGAGCATCA 57.801 34.615 0.00 0.00 37.82 3.07
2541 2861 8.823794 TCTTTTATGGATAGATCAGAGCATCAT 58.176 33.333 0.00 0.00 37.82 2.45
2562 2882 7.543947 TCATCTACTGTATTTGATTGTGCTG 57.456 36.000 0.00 0.00 0.00 4.41
2582 2902 6.634837 GTGCTGTTTTTCTCTCTTCTTAAAGC 59.365 38.462 0.00 0.00 32.18 3.51
2583 2903 6.318648 TGCTGTTTTTCTCTCTTCTTAAAGCA 59.681 34.615 0.00 0.00 32.18 3.91
2584 2904 6.855403 GCTGTTTTTCTCTCTTCTTAAAGCAG 59.145 38.462 0.00 0.00 38.92 4.24
2614 2934 9.755804 TGCATAAATCTTATTTGTGTTGTTGAA 57.244 25.926 9.78 0.00 0.00 2.69
2643 2963 0.327480 AGGGTCCTGCCATGTGGATA 60.327 55.000 2.55 0.00 39.65 2.59
2650 2974 7.980433 GGTCCTGCCATGTGGATATCCATTT 62.980 48.000 26.99 14.71 42.15 2.32
2681 3005 1.623811 GTCAGTCTTCTAACAGCCCCA 59.376 52.381 0.00 0.00 0.00 4.96
2685 3009 3.118112 CAGTCTTCTAACAGCCCCATCAT 60.118 47.826 0.00 0.00 0.00 2.45
2710 3034 3.391049 GAAGACCCAGTTGTAGTGTCAC 58.609 50.000 0.00 0.00 0.00 3.67
2771 3095 2.616634 AGATGTAGGCTGTGCTCATG 57.383 50.000 0.00 0.00 0.00 3.07
2816 3140 5.333299 TCATTTGAATCAAGCCAATCCTG 57.667 39.130 0.00 0.00 0.00 3.86
2874 3198 9.495572 CTTGTACTTTTCCTATCTGAACTTTCT 57.504 33.333 0.00 0.00 0.00 2.52
2978 3302 2.685388 GGAGAAGCTCTATTTGTTGGCC 59.315 50.000 0.00 0.00 0.00 5.36
3099 3423 6.372659 GCTACCATCATTACCATTATGGACAG 59.627 42.308 19.23 4.97 40.96 3.51
3410 6603 7.591006 TTTGGTAATGATAGTTTGACTCGTC 57.409 36.000 0.00 0.00 0.00 4.20
3429 6622 6.016943 ACTCGTCATGTTTAGTCTATAGCTCC 60.017 42.308 0.00 0.00 0.00 4.70
3437 6630 7.097192 TGTTTAGTCTATAGCTCCACTTTGTG 58.903 38.462 0.00 0.00 0.00 3.33
3443 6636 2.736670 AGCTCCACTTTGTGTCCTTT 57.263 45.000 0.00 0.00 0.00 3.11
3444 6637 3.857157 AGCTCCACTTTGTGTCCTTTA 57.143 42.857 0.00 0.00 0.00 1.85
3576 6769 7.231519 CCTTGAAGAGAAAACCAAAAGAGGTAT 59.768 37.037 0.00 0.00 42.25 2.73
3577 6770 9.284968 CTTGAAGAGAAAACCAAAAGAGGTATA 57.715 33.333 0.00 0.00 42.25 1.47
3620 6813 5.566429 GCAGTGTCCCATCTCAGACTATATG 60.566 48.000 0.00 0.00 34.02 1.78
3621 6814 5.538053 CAGTGTCCCATCTCAGACTATATGT 59.462 44.000 0.00 0.00 34.02 2.29
3622 6815 5.538053 AGTGTCCCATCTCAGACTATATGTG 59.462 44.000 0.00 0.00 34.02 3.21
3624 6817 6.490381 GTGTCCCATCTCAGACTATATGTGTA 59.510 42.308 0.00 0.00 34.02 2.90
3625 6818 6.717084 TGTCCCATCTCAGACTATATGTGTAG 59.283 42.308 0.00 0.00 34.02 2.74
3626 6819 6.717540 GTCCCATCTCAGACTATATGTGTAGT 59.282 42.308 0.00 0.00 37.61 2.73
3643 6836 7.905604 TGTGTAGTCCATTTGAAATGTCTAG 57.094 36.000 15.93 1.90 0.00 2.43
3644 6837 7.676004 TGTGTAGTCCATTTGAAATGTCTAGA 58.324 34.615 15.93 12.79 0.00 2.43
3645 6838 8.154203 TGTGTAGTCCATTTGAAATGTCTAGAA 58.846 33.333 15.93 7.49 0.00 2.10
3646 6839 8.999431 GTGTAGTCCATTTGAAATGTCTAGAAA 58.001 33.333 15.93 0.00 0.00 2.52
3647 6840 9.219603 TGTAGTCCATTTGAAATGTCTAGAAAG 57.780 33.333 15.93 0.00 0.00 2.62
3648 6841 9.436957 GTAGTCCATTTGAAATGTCTAGAAAGA 57.563 33.333 15.93 1.84 0.00 2.52
3664 6857 7.885297 TCTAGAAAGACAAATGTTTGGGAATG 58.115 34.615 9.98 0.00 42.34 2.67
3667 6860 5.473066 AAGACAAATGTTTGGGAATGGAG 57.527 39.130 9.98 0.00 42.34 3.86
3668 6861 3.834231 AGACAAATGTTTGGGAATGGAGG 59.166 43.478 9.98 0.00 42.34 4.30
3669 6862 2.905736 ACAAATGTTTGGGAATGGAGGG 59.094 45.455 9.98 0.00 42.34 4.30
3671 6864 2.834638 ATGTTTGGGAATGGAGGGAG 57.165 50.000 0.00 0.00 0.00 4.30
3704 6923 9.634163 TTACTGTACATGTCAAATACACTACTG 57.366 33.333 0.00 0.00 42.09 2.74
3732 6951 2.430332 CAAAGCCTTTCAGTCCCAAACA 59.570 45.455 0.00 0.00 0.00 2.83
3747 6966 4.447138 CCAAACATATTGGGGTAGGCTA 57.553 45.455 0.00 0.00 35.96 3.93
3802 7021 2.345760 GCACCCCTGTCCATTGCTG 61.346 63.158 0.00 0.00 0.00 4.41
3803 7022 1.075482 CACCCCTGTCCATTGCTGT 59.925 57.895 0.00 0.00 0.00 4.40
3810 7029 3.305608 CCCTGTCCATTGCTGTTTCTTTC 60.306 47.826 0.00 0.00 0.00 2.62
3868 7087 7.148490 CGGACACATGTCAAATACACTAATCAA 60.148 37.037 13.77 0.00 46.47 2.57
3887 7106 9.774742 CTAATCAAGGCAAATGTTCTTTAGTAC 57.225 33.333 0.00 0.00 0.00 2.73
3914 7133 6.968263 ATGCTCTTCTAGTATACTGCAAGA 57.032 37.500 15.90 18.24 37.43 3.02
3921 7140 9.815306 TCTTCTAGTATACTGCAAGAATAGGAT 57.185 33.333 15.90 0.00 37.43 3.24
3923 7142 8.582657 TCTAGTATACTGCAAGAATAGGATCC 57.417 38.462 15.90 2.48 37.43 3.36
3927 7146 0.764890 TGCAAGAATAGGATCCCCCG 59.235 55.000 8.55 0.00 40.87 5.73
3937 7156 0.467474 GGATCCCCCGAAACCCATTC 60.467 60.000 0.00 0.00 34.52 2.67
3944 7164 0.609131 CCGAAACCCATTCCTGCAGT 60.609 55.000 13.81 0.00 34.34 4.40
3948 7168 2.765969 CCCATTCCTGCAGTGGGT 59.234 61.111 25.88 2.97 46.07 4.51
3972 7192 4.184629 CCCAGTAAAGTTGAGAAGGATCG 58.815 47.826 0.00 0.00 0.00 3.69
4001 7221 8.746922 AATGACACGTTAAGAGTTATACGAAA 57.253 30.769 0.00 0.00 37.44 3.46
4009 7229 9.508495 CGTTAAGAGTTATACGAAACTGTTTTC 57.492 33.333 7.28 0.00 39.23 2.29
4039 7259 2.920490 CACGAAATTAAATGTTGGGCCG 59.080 45.455 0.00 0.00 0.00 6.13
4045 7269 0.034863 TAAATGTTGGGCCGTCCTCC 60.035 55.000 0.00 0.00 36.20 4.30
4079 7303 3.402628 ACCACTTGTGATCTGTACCAC 57.597 47.619 1.89 0.00 0.00 4.16
4080 7304 2.288825 ACCACTTGTGATCTGTACCACG 60.289 50.000 1.89 0.00 36.15 4.94
4279 7503 6.732531 TTAGATGAGCAAGAACTTGATGTG 57.267 37.500 17.19 0.00 42.93 3.21
4337 7561 1.532505 GCATGTGCGCACTTATCCTTG 60.533 52.381 37.59 22.94 0.00 3.61
4354 7578 2.224867 CCTTGTCCTGTCCTGTTTCCAT 60.225 50.000 0.00 0.00 0.00 3.41
4380 7607 4.196971 GGACCAACCTTAATCGCACTATT 58.803 43.478 0.00 0.00 35.41 1.73
4384 7611 7.116075 ACCAACCTTAATCGCACTATTAGTA 57.884 36.000 0.00 0.00 0.00 1.82
4385 7612 7.558604 ACCAACCTTAATCGCACTATTAGTAA 58.441 34.615 0.00 0.00 0.00 2.24
4386 7613 8.042515 ACCAACCTTAATCGCACTATTAGTAAA 58.957 33.333 0.00 0.00 0.00 2.01
4398 7630 8.748582 CGCACTATTAGTAAATACGACATTTCA 58.251 33.333 0.00 0.00 0.00 2.69
4418 7673 3.056821 TCAACTGTCGGATCGAAGAATGT 60.057 43.478 0.00 0.00 43.58 2.71
4452 7707 5.541953 ATGCTAGATCATAGACTGTTGCA 57.458 39.130 0.00 0.00 0.00 4.08
4454 7709 5.922053 TGCTAGATCATAGACTGTTGCATT 58.078 37.500 0.00 0.00 0.00 3.56
4464 7719 5.824904 AGACTGTTGCATTGGTTCATATC 57.175 39.130 0.00 0.00 0.00 1.63
4520 7775 5.050490 AGCTGTATCTTATGCCAACGTAAG 58.950 41.667 0.00 0.00 43.84 2.34
4559 7814 7.165483 GCGAAAATTTCAGAAGAGCATAAGATG 59.835 37.037 6.53 0.00 0.00 2.90
4560 7815 7.642978 CGAAAATTTCAGAAGAGCATAAGATGG 59.357 37.037 6.53 0.00 0.00 3.51
4561 7816 8.585471 AAAATTTCAGAAGAGCATAAGATGGA 57.415 30.769 0.00 0.00 0.00 3.41
4565 7820 4.964897 TCAGAAGAGCATAAGATGGAAGGA 59.035 41.667 0.00 0.00 0.00 3.36
4566 7821 5.426509 TCAGAAGAGCATAAGATGGAAGGAA 59.573 40.000 0.00 0.00 0.00 3.36
4567 7822 5.759273 CAGAAGAGCATAAGATGGAAGGAAG 59.241 44.000 0.00 0.00 0.00 3.46
4583 7844 7.895759 TGGAAGGAAGAGAATTATTTTTGGTG 58.104 34.615 0.00 0.00 0.00 4.17
4589 7850 8.147704 GGAAGAGAATTATTTTTGGTGTTTCCA 58.852 33.333 0.00 0.00 45.60 3.53
4627 7888 3.845775 CGCTTTTATGATTTGTGGACACG 59.154 43.478 0.00 0.00 0.00 4.49
4655 7918 3.742369 CCCAAACAAACAACATGATCAGC 59.258 43.478 0.00 0.00 0.00 4.26
4656 7919 4.501915 CCCAAACAAACAACATGATCAGCT 60.502 41.667 0.00 0.00 0.00 4.24
4662 7925 5.942236 ACAAACAACATGATCAGCTGTCTAT 59.058 36.000 14.67 0.00 0.00 1.98
4694 7965 5.864418 ATTTGATGCAAGCACCAATATCT 57.136 34.783 2.14 0.00 28.35 1.98
4695 7966 5.664294 TTTGATGCAAGCACCAATATCTT 57.336 34.783 2.14 0.00 28.35 2.40
4696 7967 4.642445 TGATGCAAGCACCAATATCTTG 57.358 40.909 0.00 0.00 39.95 3.02
4697 7968 4.018490 TGATGCAAGCACCAATATCTTGT 58.982 39.130 0.00 0.00 39.36 3.16
4698 7969 4.096833 TGATGCAAGCACCAATATCTTGTC 59.903 41.667 0.00 0.00 39.36 3.18
4699 7970 3.689347 TGCAAGCACCAATATCTTGTCT 58.311 40.909 0.00 0.00 39.36 3.41
4700 7971 3.691118 TGCAAGCACCAATATCTTGTCTC 59.309 43.478 0.00 0.00 39.36 3.36
4701 7972 3.242543 GCAAGCACCAATATCTTGTCTCG 60.243 47.826 0.00 0.00 39.36 4.04
4702 7973 2.555199 AGCACCAATATCTTGTCTCGC 58.445 47.619 0.00 0.00 0.00 5.03
4703 7974 2.093500 AGCACCAATATCTTGTCTCGCA 60.093 45.455 0.00 0.00 0.00 5.10
4704 7975 2.286294 GCACCAATATCTTGTCTCGCAG 59.714 50.000 0.00 0.00 0.00 5.18
4705 7976 3.525537 CACCAATATCTTGTCTCGCAGT 58.474 45.455 0.00 0.00 0.00 4.40
4706 7977 4.682787 CACCAATATCTTGTCTCGCAGTA 58.317 43.478 0.00 0.00 0.00 2.74
4707 7978 4.742167 CACCAATATCTTGTCTCGCAGTAG 59.258 45.833 0.00 0.00 0.00 2.57
4708 7979 4.645136 ACCAATATCTTGTCTCGCAGTAGA 59.355 41.667 0.00 0.00 0.00 2.59
4709 7980 5.127194 ACCAATATCTTGTCTCGCAGTAGAA 59.873 40.000 0.00 0.00 0.00 2.10
4710 7981 6.042777 CCAATATCTTGTCTCGCAGTAGAAA 58.957 40.000 0.00 0.00 0.00 2.52
4711 7982 6.703607 CCAATATCTTGTCTCGCAGTAGAAAT 59.296 38.462 0.00 0.00 0.00 2.17
4712 7983 7.307042 CCAATATCTTGTCTCGCAGTAGAAATG 60.307 40.741 0.00 0.00 0.00 2.32
4713 7984 4.783764 TCTTGTCTCGCAGTAGAAATGA 57.216 40.909 0.00 0.00 0.00 2.57
4714 7985 5.134202 TCTTGTCTCGCAGTAGAAATGAA 57.866 39.130 0.00 0.00 0.00 2.57
4715 7986 5.538118 TCTTGTCTCGCAGTAGAAATGAAA 58.462 37.500 0.00 0.00 0.00 2.69
4716 7987 5.989168 TCTTGTCTCGCAGTAGAAATGAAAA 59.011 36.000 0.00 0.00 0.00 2.29
4717 7988 6.481976 TCTTGTCTCGCAGTAGAAATGAAAAA 59.518 34.615 0.00 0.00 0.00 1.94
4754 8025 0.914417 TCCTTCCCTACCAAGGCCAG 60.914 60.000 5.01 0.00 42.14 4.85
4821 8092 2.673833 GTCACCGTCGTCTTGAATCTT 58.326 47.619 0.00 0.00 0.00 2.40
4849 8120 6.228273 TGTACTCTTGCTTGATCTTTTTCG 57.772 37.500 0.00 0.00 0.00 3.46
4875 8146 3.458163 TCGGCCCTGGACACGATC 61.458 66.667 0.00 0.00 0.00 3.69
4887 8158 4.148825 ACGATCGCCCTGGTGAGC 62.149 66.667 16.60 4.94 38.09 4.26
4899 8170 4.104417 GTGAGCGCGTCCTCGTCT 62.104 66.667 8.43 0.00 39.49 4.18
4952 8226 0.927537 TGAACAACGAACACAGAGCG 59.072 50.000 0.00 0.00 0.00 5.03
4953 8227 0.928229 GAACAACGAACACAGAGCGT 59.072 50.000 0.00 0.00 40.35 5.07
4954 8228 2.121786 GAACAACGAACACAGAGCGTA 58.878 47.619 0.00 0.00 37.26 4.42
4958 8232 3.239254 CAACGAACACAGAGCGTATACA 58.761 45.455 3.32 0.00 37.26 2.29
4978 8252 5.528043 ACATATCATCTCACAGTGAGGAC 57.472 43.478 27.15 0.00 44.39 3.85
4981 8255 2.087646 TCATCTCACAGTGAGGACTCG 58.912 52.381 27.15 13.08 44.39 4.18
4993 8267 0.106419 AGGACTCGTCTCATCTCCCC 60.106 60.000 0.00 0.00 0.00 4.81
5001 8275 0.044702 TCTCATCTCCCCCACCACAT 59.955 55.000 0.00 0.00 0.00 3.21
5005 8279 2.057140 CATCTCCCCCACCACATGATA 58.943 52.381 0.00 0.00 0.00 2.15
5012 8286 3.282021 CCCCACCACATGATAAGTGAAG 58.718 50.000 0.00 0.00 39.30 3.02
5059 8333 1.287815 CCGTGACGTACCTCTGCAA 59.712 57.895 3.64 0.00 0.00 4.08
5109 8383 2.613133 GACAGCAATCTTGAGCATCCTC 59.387 50.000 0.00 0.00 38.62 3.71
5162 8439 0.245813 TGCAACAACAGCAGCAACAA 59.754 45.000 0.00 0.00 37.02 2.83
5164 8441 0.915904 CAACAACAGCAGCAACAACG 59.084 50.000 0.00 0.00 0.00 4.10
5176 8453 2.747446 AGCAACAACGACAAGAACAAGT 59.253 40.909 0.00 0.00 0.00 3.16
5191 8468 2.722094 ACAAGTGCTTCAGTTCACCAA 58.278 42.857 0.00 0.00 33.90 3.67
5192 8469 3.088532 ACAAGTGCTTCAGTTCACCAAA 58.911 40.909 0.00 0.00 33.90 3.28
5193 8470 3.701040 ACAAGTGCTTCAGTTCACCAAAT 59.299 39.130 0.00 0.00 33.90 2.32
5194 8471 4.160252 ACAAGTGCTTCAGTTCACCAAATT 59.840 37.500 0.00 0.00 33.90 1.82
5195 8472 4.311816 AGTGCTTCAGTTCACCAAATTG 57.688 40.909 0.00 0.00 33.90 2.32
5196 8473 3.701040 AGTGCTTCAGTTCACCAAATTGT 59.299 39.130 0.00 0.00 33.90 2.71
5197 8474 4.160252 AGTGCTTCAGTTCACCAAATTGTT 59.840 37.500 0.00 0.00 33.90 2.83
5198 8475 4.504097 GTGCTTCAGTTCACCAAATTGTTC 59.496 41.667 0.00 0.00 0.00 3.18
5199 8476 4.051237 GCTTCAGTTCACCAAATTGTTCC 58.949 43.478 0.00 0.00 0.00 3.62
5200 8477 4.441356 GCTTCAGTTCACCAAATTGTTCCA 60.441 41.667 0.00 0.00 0.00 3.53
5201 8478 5.659463 CTTCAGTTCACCAAATTGTTCCAA 58.341 37.500 0.00 0.00 0.00 3.53
5202 8479 5.867903 TCAGTTCACCAAATTGTTCCAAT 57.132 34.783 0.00 0.00 0.00 3.16
5203 8480 5.841810 TCAGTTCACCAAATTGTTCCAATC 58.158 37.500 0.00 0.00 0.00 2.67
5204 8481 5.362143 TCAGTTCACCAAATTGTTCCAATCA 59.638 36.000 0.00 0.00 0.00 2.57
5205 8482 5.693104 CAGTTCACCAAATTGTTCCAATCAG 59.307 40.000 0.00 0.00 0.00 2.90
5206 8483 5.363580 AGTTCACCAAATTGTTCCAATCAGT 59.636 36.000 0.00 0.00 0.00 3.41
5207 8484 5.867903 TCACCAAATTGTTCCAATCAGTT 57.132 34.783 0.00 0.00 0.00 3.16
5208 8485 5.841810 TCACCAAATTGTTCCAATCAGTTC 58.158 37.500 0.00 0.00 0.00 3.01
5209 8486 5.362143 TCACCAAATTGTTCCAATCAGTTCA 59.638 36.000 0.00 0.00 0.00 3.18
5210 8487 5.463061 CACCAAATTGTTCCAATCAGTTCAC 59.537 40.000 0.00 0.00 0.00 3.18
5211 8488 5.128499 ACCAAATTGTTCCAATCAGTTCACA 59.872 36.000 0.00 0.00 0.00 3.58
5212 8489 6.183360 ACCAAATTGTTCCAATCAGTTCACAT 60.183 34.615 0.00 0.00 0.00 3.21
5213 8490 6.366877 CCAAATTGTTCCAATCAGTTCACATC 59.633 38.462 0.00 0.00 0.00 3.06
5214 8491 4.747540 TTGTTCCAATCAGTTCACATCG 57.252 40.909 0.00 0.00 0.00 3.84
5215 8492 4.001618 TGTTCCAATCAGTTCACATCGA 57.998 40.909 0.00 0.00 0.00 3.59
5216 8493 4.384940 TGTTCCAATCAGTTCACATCGAA 58.615 39.130 0.00 0.00 0.00 3.71
5217 8494 4.452114 TGTTCCAATCAGTTCACATCGAAG 59.548 41.667 0.00 0.00 33.09 3.79
5218 8495 4.535526 TCCAATCAGTTCACATCGAAGA 57.464 40.909 0.00 0.00 45.75 2.87
5219 8496 4.498241 TCCAATCAGTTCACATCGAAGAG 58.502 43.478 0.00 0.00 43.63 2.85
5220 8497 4.021104 TCCAATCAGTTCACATCGAAGAGT 60.021 41.667 0.00 0.00 43.63 3.24
5221 8498 5.185056 TCCAATCAGTTCACATCGAAGAGTA 59.815 40.000 0.00 0.00 43.63 2.59
5222 8499 5.518128 CCAATCAGTTCACATCGAAGAGTAG 59.482 44.000 0.00 0.00 43.63 2.57
5223 8500 5.906113 ATCAGTTCACATCGAAGAGTAGT 57.094 39.130 0.00 0.00 43.63 2.73
5224 8501 5.707242 TCAGTTCACATCGAAGAGTAGTT 57.293 39.130 0.00 0.00 43.63 2.24
5225 8502 6.812879 TCAGTTCACATCGAAGAGTAGTTA 57.187 37.500 0.00 0.00 43.63 2.24
5226 8503 7.392494 TCAGTTCACATCGAAGAGTAGTTAT 57.608 36.000 0.00 0.00 43.63 1.89
5227 8504 7.827701 TCAGTTCACATCGAAGAGTAGTTATT 58.172 34.615 0.00 0.00 43.63 1.40
5228 8505 8.953313 TCAGTTCACATCGAAGAGTAGTTATTA 58.047 33.333 0.00 0.00 43.63 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 160 9.066892 AGTTTATTGAGCAAAATCAGTTCACTA 57.933 29.630 0.00 0.00 0.00 2.74
784 874 1.688197 CCAATGTGCAAGTTTGGTCCT 59.312 47.619 13.01 0.00 36.08 3.85
831 921 5.359194 TTTGGTCCCAAACTTGCAAAATA 57.641 34.783 7.40 0.00 40.51 1.40
935 1026 2.052104 GGGGCCGTTTGATCCTTGG 61.052 63.158 0.00 0.00 0.00 3.61
938 1029 4.109675 CCGGGGCCGTTTGATCCT 62.110 66.667 0.00 0.00 37.81 3.24
988 1079 1.679032 CCCGTCCATGTTCTTCCCTTC 60.679 57.143 0.00 0.00 0.00 3.46
991 1082 1.749258 GCCCGTCCATGTTCTTCCC 60.749 63.158 0.00 0.00 0.00 3.97
1027 1120 0.453793 AAGATCGAGCTGACCGACTG 59.546 55.000 2.80 0.00 38.97 3.51
1129 1222 4.779733 AGAGCCGTCCGTGGGGAT 62.780 66.667 0.00 0.00 46.14 3.85
1142 1235 4.475135 GAAGGTCCGGGCCAGAGC 62.475 72.222 30.48 10.99 38.76 4.09
1150 1243 0.739561 CGGAGTAAGAGAAGGTCCGG 59.260 60.000 0.00 0.00 45.21 5.14
1241 1342 0.232303 GACTGTCACTCAAAACGCGG 59.768 55.000 12.47 0.00 0.00 6.46
1265 1366 0.454600 CGCTAGAACCTACAAGCCGA 59.545 55.000 0.00 0.00 0.00 5.54
1274 1375 3.083997 CCCCTGGCGCTAGAACCT 61.084 66.667 23.73 0.00 0.00 3.50
1275 1376 4.176752 CCCCCTGGCGCTAGAACC 62.177 72.222 23.73 0.00 0.00 3.62
1345 1452 8.723942 ATTTAGATGAACGAAGAGTAAAGCAT 57.276 30.769 0.00 0.00 0.00 3.79
1346 1453 7.009265 CGATTTAGATGAACGAAGAGTAAAGCA 59.991 37.037 0.00 0.00 0.00 3.91
1362 1469 4.260132 GCTTGACAGACAGCGATTTAGATG 60.260 45.833 0.00 0.00 0.00 2.90
1373 1480 3.997021 ACCGAAAATAGCTTGACAGACAG 59.003 43.478 0.00 0.00 0.00 3.51
1381 1488 0.802494 ACGCCACCGAAAATAGCTTG 59.198 50.000 0.00 0.00 38.29 4.01
1408 1515 3.503363 GTCTGGTTGCTGAACATGAATGA 59.497 43.478 0.00 0.00 33.27 2.57
1409 1516 3.668757 CGTCTGGTTGCTGAACATGAATG 60.669 47.826 0.00 0.00 33.27 2.67
1410 1517 2.485426 CGTCTGGTTGCTGAACATGAAT 59.515 45.455 0.00 0.00 33.27 2.57
1411 1518 1.872952 CGTCTGGTTGCTGAACATGAA 59.127 47.619 0.00 0.00 33.27 2.57
1446 1553 8.598916 TGGGAATTGAGTAATCAAGTACAGTAA 58.401 33.333 16.44 0.00 30.81 2.24
1454 1561 4.790766 GCGCATGGGAATTGAGTAATCAAG 60.791 45.833 14.90 0.00 32.69 3.02
1473 1580 2.671619 GTTGCCCTAGGTTGCGCA 60.672 61.111 5.66 5.66 0.00 6.09
1474 1581 3.440415 GGTTGCCCTAGGTTGCGC 61.440 66.667 8.29 0.00 0.00 6.09
1475 1582 0.965363 AATGGTTGCCCTAGGTTGCG 60.965 55.000 8.29 0.00 0.00 4.85
1476 1583 2.137810 TAATGGTTGCCCTAGGTTGC 57.862 50.000 8.29 5.49 0.00 4.17
1556 1663 7.044181 TCTGATTGGATAAACTCAGTCACATC 58.956 38.462 0.00 0.00 37.12 3.06
1566 1673 6.664816 TCCAAATGCTTCTGATTGGATAAACT 59.335 34.615 5.74 0.00 44.71 2.66
1572 1679 3.765381 TGTCCAAATGCTTCTGATTGGA 58.235 40.909 5.74 5.74 46.73 3.53
1573 1680 4.240096 GTTGTCCAAATGCTTCTGATTGG 58.760 43.478 1.40 1.40 42.92 3.16
1574 1681 4.240096 GGTTGTCCAAATGCTTCTGATTG 58.760 43.478 0.00 0.00 0.00 2.67
1726 1843 8.794553 CGTCTTATATTATGTTACAGAGGGAGT 58.205 37.037 0.00 0.00 0.00 3.85
1727 1844 8.794553 ACGTCTTATATTATGTTACAGAGGGAG 58.205 37.037 0.00 0.00 0.00 4.30
1728 1845 8.701908 ACGTCTTATATTATGTTACAGAGGGA 57.298 34.615 0.00 0.00 0.00 4.20
1729 1846 9.760077 AAACGTCTTATATTATGTTACAGAGGG 57.240 33.333 0.00 0.00 0.00 4.30
1754 1871 2.507886 TCCCTCCTGACAGTGTCAAAAA 59.492 45.455 25.41 13.19 42.26 1.94
1755 1872 2.104792 CTCCCTCCTGACAGTGTCAAAA 59.895 50.000 25.41 15.47 42.26 2.44
1756 1873 1.694150 CTCCCTCCTGACAGTGTCAAA 59.306 52.381 25.41 15.80 42.26 2.69
1757 1874 1.342074 CTCCCTCCTGACAGTGTCAA 58.658 55.000 25.41 11.99 42.26 3.18
1758 1875 0.188587 ACTCCCTCCTGACAGTGTCA 59.811 55.000 24.09 24.09 40.50 3.58
1759 1876 2.217510 TACTCCCTCCTGACAGTGTC 57.782 55.000 16.68 16.68 0.00 3.67
1760 1877 2.930109 ATACTCCCTCCTGACAGTGT 57.070 50.000 0.00 0.00 0.00 3.55
1761 1878 3.429547 CGAAATACTCCCTCCTGACAGTG 60.430 52.174 0.93 0.00 0.00 3.66
1762 1879 2.761208 CGAAATACTCCCTCCTGACAGT 59.239 50.000 0.93 0.00 0.00 3.55
1763 1880 2.761208 ACGAAATACTCCCTCCTGACAG 59.239 50.000 0.00 0.00 0.00 3.51
1764 1881 2.816411 ACGAAATACTCCCTCCTGACA 58.184 47.619 0.00 0.00 0.00 3.58
1765 1882 3.194968 TCAACGAAATACTCCCTCCTGAC 59.805 47.826 0.00 0.00 0.00 3.51
1766 1883 3.194968 GTCAACGAAATACTCCCTCCTGA 59.805 47.826 0.00 0.00 0.00 3.86
1767 1884 3.195825 AGTCAACGAAATACTCCCTCCTG 59.804 47.826 0.00 0.00 0.00 3.86
1768 1885 3.195825 CAGTCAACGAAATACTCCCTCCT 59.804 47.826 0.00 0.00 0.00 3.69
1769 1886 3.056035 ACAGTCAACGAAATACTCCCTCC 60.056 47.826 0.00 0.00 0.00 4.30
1770 1887 4.189639 ACAGTCAACGAAATACTCCCTC 57.810 45.455 0.00 0.00 0.00 4.30
1771 1888 4.380233 CGTACAGTCAACGAAATACTCCCT 60.380 45.833 0.00 0.00 42.90 4.20
1772 1889 3.855950 CGTACAGTCAACGAAATACTCCC 59.144 47.826 0.00 0.00 42.90 4.30
1773 1890 3.302699 GCGTACAGTCAACGAAATACTCC 59.697 47.826 0.00 0.00 42.90 3.85
1774 1891 3.916172 TGCGTACAGTCAACGAAATACTC 59.084 43.478 0.00 0.00 42.90 2.59
1775 1892 3.904571 TGCGTACAGTCAACGAAATACT 58.095 40.909 0.00 0.00 42.90 2.12
1776 1893 4.835199 ATGCGTACAGTCAACGAAATAC 57.165 40.909 0.00 0.00 42.90 1.89
1792 1909 6.795098 TCAGTTAAGTAACATCAAATGCGT 57.205 33.333 4.14 0.00 38.62 5.24
1793 1910 7.463544 TGATCAGTTAAGTAACATCAAATGCG 58.536 34.615 4.14 0.00 38.62 4.73
1821 1962 6.660887 GACAAAGATCTTGTCTCAGAATCC 57.339 41.667 21.17 3.15 43.91 3.01
1869 2010 4.307432 ACGCTTCACATATATAGTGGCAC 58.693 43.478 10.29 10.29 37.58 5.01
1870 2011 4.600692 ACGCTTCACATATATAGTGGCA 57.399 40.909 12.43 0.00 37.58 4.92
1873 2014 9.066939 GTTCATCTACGCTTCACATATATAGTG 57.933 37.037 8.26 8.26 38.32 2.74
1974 2121 5.163953 CCTGAGACAAAAGCACGTACAATAG 60.164 44.000 0.00 0.00 0.00 1.73
1984 2131 2.023673 CACAACCCTGAGACAAAAGCA 58.976 47.619 0.00 0.00 0.00 3.91
1985 2132 2.291741 CTCACAACCCTGAGACAAAAGC 59.708 50.000 0.00 0.00 40.28 3.51
2256 2572 9.991906 CAAGGAATATGCATTATTTCAAGGAAT 57.008 29.630 3.54 0.00 29.19 3.01
2381 2700 0.872388 GGCACTCGACCGTTGAAAAT 59.128 50.000 0.00 0.00 0.00 1.82
2388 2707 0.106149 AAGAAAAGGCACTCGACCGT 59.894 50.000 0.00 0.00 38.49 4.83
2390 2709 3.314541 TCTAAGAAAAGGCACTCGACC 57.685 47.619 0.00 0.00 38.49 4.79
2420 2739 6.294176 CCCTCCAACTTAACAAATGTTCTCAG 60.294 42.308 1.37 1.02 39.31 3.35
2459 2778 2.291209 TTCCAACATGCCATGACAGT 57.709 45.000 12.53 0.00 0.00 3.55
2476 2795 8.239314 TCAAAATTCAAGACATCTACAGCATTC 58.761 33.333 0.00 0.00 0.00 2.67
2477 2796 8.114331 TCAAAATTCAAGACATCTACAGCATT 57.886 30.769 0.00 0.00 0.00 3.56
2486 2805 9.688592 AGATCAAAACTCAAAATTCAAGACATC 57.311 29.630 0.00 0.00 0.00 3.06
2524 2843 7.395190 ACAGTAGATGATGCTCTGATCTATC 57.605 40.000 0.00 0.00 32.64 2.08
2531 2850 8.496751 CAATCAAATACAGTAGATGATGCTCTG 58.503 37.037 10.27 3.83 31.49 3.35
2532 2851 8.209584 ACAATCAAATACAGTAGATGATGCTCT 58.790 33.333 10.27 0.00 31.49 4.09
2540 2860 7.928307 AACAGCACAATCAAATACAGTAGAT 57.072 32.000 0.00 0.00 0.00 1.98
2541 2861 7.744087 AAACAGCACAATCAAATACAGTAGA 57.256 32.000 0.00 0.00 0.00 2.59
2602 2922 8.919145 ACCCTTTATATCTTTTCAACAACACAA 58.081 29.630 0.00 0.00 0.00 3.33
2603 2923 8.472007 ACCCTTTATATCTTTTCAACAACACA 57.528 30.769 0.00 0.00 0.00 3.72
2614 2934 5.103515 ACATGGCAGGACCCTTTATATCTTT 60.104 40.000 5.99 0.00 37.83 2.52
2625 2945 0.773644 ATATCCACATGGCAGGACCC 59.226 55.000 5.99 0.00 36.60 4.46
2626 2946 1.271597 GGATATCCACATGGCAGGACC 60.272 57.143 17.34 0.00 36.60 4.46
2692 3016 4.595762 TTAGTGACACTACAACTGGGTC 57.404 45.455 14.96 0.00 28.93 4.46
2771 3095 0.036010 TGCAAGACTGGAAGCCTAGC 60.036 55.000 0.00 0.00 37.60 3.42
2816 3140 7.809806 AGTGAGAAACAAAATGCTACAATAAGC 59.190 33.333 0.00 0.00 43.08 3.09
2874 3198 2.468868 TTCTGCCCCAGGGAAAGCA 61.469 57.895 7.25 7.48 37.50 3.91
2978 3302 2.742053 CCCATTTCTGTAGTGTCCAACG 59.258 50.000 0.00 0.00 0.00 4.10
3099 3423 8.426881 TTTCCAAATTAAGTAAAACCAAGTGC 57.573 30.769 0.00 0.00 0.00 4.40
3274 6467 5.743636 ATGGCATGTTTTCCAGTGTAATT 57.256 34.783 0.00 0.00 35.57 1.40
3410 6603 7.766278 ACAAAGTGGAGCTATAGACTAAACATG 59.234 37.037 3.21 0.00 0.00 3.21
3429 6622 5.895636 TGCCATATAAAGGACACAAAGTG 57.104 39.130 0.00 0.00 39.75 3.16
3437 6630 3.755378 CAGGAGCATGCCATATAAAGGAC 59.245 47.826 15.66 0.00 0.00 3.85
3443 6636 5.633117 TCAAATTCAGGAGCATGCCATATA 58.367 37.500 15.66 0.00 0.00 0.86
3444 6637 4.476297 TCAAATTCAGGAGCATGCCATAT 58.524 39.130 15.66 0.00 0.00 1.78
3486 6679 3.734463 TGGAGAAAACGTGATAGTGCAA 58.266 40.909 0.00 0.00 0.00 4.08
3620 6813 8.547967 TTCTAGACATTTCAAATGGACTACAC 57.452 34.615 14.70 0.00 0.00 2.90
3621 6814 9.219603 CTTTCTAGACATTTCAAATGGACTACA 57.780 33.333 14.70 3.48 0.00 2.74
3622 6815 9.436957 TCTTTCTAGACATTTCAAATGGACTAC 57.563 33.333 14.70 1.26 0.00 2.73
3640 6833 7.039784 TCCATTCCCAAACATTTGTCTTTCTAG 60.040 37.037 3.79 0.00 36.45 2.43
3641 6834 6.780031 TCCATTCCCAAACATTTGTCTTTCTA 59.220 34.615 3.79 0.00 36.45 2.10
3643 6836 5.852827 TCCATTCCCAAACATTTGTCTTTC 58.147 37.500 3.79 0.00 36.45 2.62
3644 6837 5.221702 CCTCCATTCCCAAACATTTGTCTTT 60.222 40.000 3.79 0.00 36.45 2.52
3645 6838 4.284234 CCTCCATTCCCAAACATTTGTCTT 59.716 41.667 3.79 0.00 36.45 3.01
3646 6839 3.834231 CCTCCATTCCCAAACATTTGTCT 59.166 43.478 3.79 0.00 36.45 3.41
3647 6840 3.055891 CCCTCCATTCCCAAACATTTGTC 60.056 47.826 3.79 0.00 36.45 3.18
3648 6841 2.905736 CCCTCCATTCCCAAACATTTGT 59.094 45.455 3.79 0.00 36.45 2.83
3652 6845 2.003072 ACTCCCTCCATTCCCAAACAT 58.997 47.619 0.00 0.00 0.00 2.71
3653 6846 1.455822 ACTCCCTCCATTCCCAAACA 58.544 50.000 0.00 0.00 0.00 2.83
3654 6847 2.576648 AGTACTCCCTCCATTCCCAAAC 59.423 50.000 0.00 0.00 0.00 2.93
3655 6848 2.929301 AGTACTCCCTCCATTCCCAAA 58.071 47.619 0.00 0.00 0.00 3.28
3656 6849 2.661176 AGTACTCCCTCCATTCCCAA 57.339 50.000 0.00 0.00 0.00 4.12
3657 6850 4.295905 AATAGTACTCCCTCCATTCCCA 57.704 45.455 0.00 0.00 0.00 4.37
3658 6851 5.845065 AGTAAATAGTACTCCCTCCATTCCC 59.155 44.000 0.00 0.00 0.00 3.97
3659 6852 6.326843 ACAGTAAATAGTACTCCCTCCATTCC 59.673 42.308 0.00 0.00 0.00 3.01
3660 6853 7.362802 ACAGTAAATAGTACTCCCTCCATTC 57.637 40.000 0.00 0.00 0.00 2.67
3662 6855 7.359849 TGTACAGTAAATAGTACTCCCTCCAT 58.640 38.462 0.00 0.00 40.84 3.41
3664 6857 7.287235 ACATGTACAGTAAATAGTACTCCCTCC 59.713 40.741 0.00 0.00 40.84 4.30
3667 6860 8.004087 TGACATGTACAGTAAATAGTACTCCC 57.996 38.462 0.00 0.00 40.84 4.30
3668 6861 9.865321 TTTGACATGTACAGTAAATAGTACTCC 57.135 33.333 0.00 0.00 40.84 3.85
3704 6923 2.860136 GACTGAAAGGCTTTGTTGTTGC 59.140 45.455 18.79 1.21 40.68 4.17
3732 6951 4.827789 TCAACTCTAGCCTACCCCAATAT 58.172 43.478 0.00 0.00 0.00 1.28
3747 6966 7.353414 TCGAGATCTTATGGATTTCAACTCT 57.647 36.000 0.00 0.00 35.90 3.24
3782 7001 2.765969 CAATGGACAGGGGTGCCT 59.234 61.111 0.00 0.00 33.90 4.75
3802 7021 5.122396 AGGACTGCAATATCACGAAAGAAAC 59.878 40.000 0.00 0.00 0.00 2.78
3803 7022 5.245531 AGGACTGCAATATCACGAAAGAAA 58.754 37.500 0.00 0.00 0.00 2.52
3810 7029 2.868583 CCTGAAGGACTGCAATATCACG 59.131 50.000 0.00 0.00 37.39 4.35
3868 7087 6.969993 TTTGGTACTAAAGAACATTTGCCT 57.030 33.333 0.00 0.00 0.00 4.75
3887 7106 6.283694 TGCAGTATACTAGAAGAGCATTTGG 58.716 40.000 4.74 0.00 0.00 3.28
3914 7133 1.146452 GGGTTTCGGGGGATCCTATT 58.854 55.000 12.58 0.00 0.00 1.73
3921 7140 1.542881 AGGAATGGGTTTCGGGGGA 60.543 57.895 0.00 0.00 34.98 4.81
3923 7142 2.052104 GCAGGAATGGGTTTCGGGG 61.052 63.158 0.00 0.00 34.98 5.73
3927 7146 0.890683 CCACTGCAGGAATGGGTTTC 59.109 55.000 19.93 0.00 0.00 2.78
3948 7168 2.708861 TCCTTCTCAACTTTACTGGGCA 59.291 45.455 0.00 0.00 0.00 5.36
3972 7192 8.100306 CGTATAACTCTTAACGTGTCATTTGTC 58.900 37.037 0.00 0.00 0.00 3.18
4001 7221 1.603802 CGTGGCATGTGAGAAAACAGT 59.396 47.619 0.00 0.00 32.52 3.55
4009 7229 5.401550 ACATTTAATTTCGTGGCATGTGAG 58.598 37.500 6.60 0.00 0.00 3.51
4039 7259 6.828785 AGTGGTATGTCAAATAATTGGAGGAC 59.171 38.462 0.00 0.00 37.15 3.85
4045 7269 9.507280 GATCACAAGTGGTATGTCAAATAATTG 57.493 33.333 0.00 0.00 37.92 2.32
4090 7314 5.869344 TCAGTCAGTCATGTTAATTCTTCCG 59.131 40.000 0.00 0.00 0.00 4.30
4156 7380 2.978010 ACAAGTCCAAAGGCGCCG 60.978 61.111 23.20 6.78 0.00 6.46
4279 7503 4.436986 GCCAAGGTAAGATTACGCAACTTC 60.437 45.833 0.00 0.00 34.50 3.01
4316 7540 0.392863 AGGATAAGTGCGCACATGCA 60.393 50.000 39.21 22.13 43.95 3.96
4354 7578 2.156098 GCGATTAAGGTTGGTCCAACA 58.844 47.619 31.08 14.80 45.11 3.33
4398 7630 3.594603 ACATTCTTCGATCCGACAGTT 57.405 42.857 0.00 0.00 34.89 3.16
4401 7633 4.649088 ACATACATTCTTCGATCCGACA 57.351 40.909 0.00 0.00 34.89 4.35
4464 7719 8.387190 TGCTTGTAAGATGGATTATCAGAATG 57.613 34.615 0.00 0.00 38.31 2.67
4520 7775 2.780361 TTTTCGCGTCAACATCGATC 57.220 45.000 5.77 0.00 31.96 3.69
4521 7776 3.740044 AATTTTCGCGTCAACATCGAT 57.260 38.095 5.77 0.00 31.96 3.59
4522 7777 3.059529 TGAAATTTTCGCGTCAACATCGA 60.060 39.130 5.77 0.00 0.00 3.59
4523 7778 3.222361 TGAAATTTTCGCGTCAACATCG 58.778 40.909 5.77 0.00 0.00 3.84
4559 7814 7.896811 ACACCAAAAATAATTCTCTTCCTTCC 58.103 34.615 0.00 0.00 0.00 3.46
4560 7815 9.764363 AAACACCAAAAATAATTCTCTTCCTTC 57.236 29.630 0.00 0.00 0.00 3.46
4561 7816 9.764363 GAAACACCAAAAATAATTCTCTTCCTT 57.236 29.630 0.00 0.00 0.00 3.36
4583 7844 7.971455 AGCGTAACTTTATTAGATGTGGAAAC 58.029 34.615 0.00 0.00 0.00 2.78
4601 7862 6.304683 GTGTCCACAAATCATAAAAGCGTAAC 59.695 38.462 0.00 0.00 0.00 2.50
4604 7865 4.612712 CGTGTCCACAAATCATAAAAGCGT 60.613 41.667 0.00 0.00 0.00 5.07
4613 7874 2.811431 GGAACATCGTGTCCACAAATCA 59.189 45.455 0.00 0.00 0.00 2.57
4614 7875 2.161609 GGGAACATCGTGTCCACAAATC 59.838 50.000 0.00 0.00 0.00 2.17
4620 7881 1.134068 TGTTTGGGAACATCGTGTCCA 60.134 47.619 0.00 0.00 40.71 4.02
4621 7882 1.600023 TGTTTGGGAACATCGTGTCC 58.400 50.000 0.00 0.00 40.71 4.02
4627 7888 5.355596 TCATGTTGTTTGTTTGGGAACATC 58.644 37.500 0.00 0.00 44.71 3.06
4655 7918 8.817100 TGCATCAAATAAACGTCTAATAGACAG 58.183 33.333 19.16 13.87 45.30 3.51
4656 7919 8.710835 TGCATCAAATAAACGTCTAATAGACA 57.289 30.769 19.16 1.28 45.30 3.41
4662 7925 6.083630 GTGCTTGCATCAAATAAACGTCTAA 58.916 36.000 0.00 0.00 0.00 2.10
4694 7965 6.612247 TTTTTCATTTCTACTGCGAGACAA 57.388 33.333 0.00 0.00 0.00 3.18
4716 7987 8.753133 GGGAAGGAGTGAAGATTGAAATATTTT 58.247 33.333 1.43 0.00 0.00 1.82
4717 7988 8.118600 AGGGAAGGAGTGAAGATTGAAATATTT 58.881 33.333 0.00 0.00 0.00 1.40
4718 7989 7.646884 AGGGAAGGAGTGAAGATTGAAATATT 58.353 34.615 0.00 0.00 0.00 1.28
4719 7990 7.218314 AGGGAAGGAGTGAAGATTGAAATAT 57.782 36.000 0.00 0.00 0.00 1.28
4720 7991 6.642733 AGGGAAGGAGTGAAGATTGAAATA 57.357 37.500 0.00 0.00 0.00 1.40
4721 7992 5.527026 AGGGAAGGAGTGAAGATTGAAAT 57.473 39.130 0.00 0.00 0.00 2.17
4754 8025 4.876107 CGGGGTATTACATGGATATCTTGC 59.124 45.833 2.05 0.00 0.00 4.01
4803 8074 2.921754 GGTAAGATTCAAGACGACGGTG 59.078 50.000 0.00 0.00 0.00 4.94
4806 8077 3.179830 CAGGGTAAGATTCAAGACGACG 58.820 50.000 0.00 0.00 0.00 5.12
4821 8092 4.353777 AGATCAAGCAAGAGTACAGGGTA 58.646 43.478 0.00 0.00 0.00 3.69
4849 8120 2.509336 CAGGGCCGACATCGACAC 60.509 66.667 2.09 0.00 43.02 3.67
4887 8158 2.504244 GGAACAGACGAGGACGCG 60.504 66.667 3.53 3.53 43.96 6.01
4899 8170 4.168101 ACTCCATCTTAGGACTTGGAACA 58.832 43.478 0.00 0.00 37.78 3.18
4978 8252 1.395826 GGTGGGGGAGATGAGACGAG 61.396 65.000 0.00 0.00 0.00 4.18
4981 8255 0.909610 TGTGGTGGGGGAGATGAGAC 60.910 60.000 0.00 0.00 0.00 3.36
4993 8267 5.297776 GGAATCTTCACTTATCATGTGGTGG 59.702 44.000 0.00 0.00 36.21 4.61
5001 8275 4.020573 ACACGTGGGAATCTTCACTTATCA 60.021 41.667 21.57 0.00 0.00 2.15
5005 8279 2.930826 ACACGTGGGAATCTTCACTT 57.069 45.000 21.57 0.00 0.00 3.16
5012 8286 4.396166 AGATCAATCAAACACGTGGGAATC 59.604 41.667 21.57 13.09 0.00 2.52
5059 8333 4.070716 CTCACATCTCCTGAAAAGCACTT 58.929 43.478 0.00 0.00 0.00 3.16
5109 8383 3.667282 AGCAGCAGCCAGTTTGCG 61.667 61.111 0.00 0.00 45.98 4.85
5162 8439 2.609459 CTGAAGCACTTGTTCTTGTCGT 59.391 45.455 0.00 0.00 0.00 4.34
5164 8441 4.094887 TGAACTGAAGCACTTGTTCTTGTC 59.905 41.667 12.23 0.00 39.38 3.18
5176 8453 4.441356 GGAACAATTTGGTGAACTGAAGCA 60.441 41.667 0.78 0.00 0.00 3.91
5191 8468 7.786060 CTTCGATGTGAACTGATTGGAACAATT 60.786 37.037 0.00 0.00 36.42 2.32
5192 8469 6.348786 CTTCGATGTGAACTGATTGGAACAAT 60.349 38.462 0.00 0.00 36.42 2.71
5193 8470 5.049474 CTTCGATGTGAACTGATTGGAACAA 60.049 40.000 0.00 0.00 36.42 2.83
5194 8471 4.001618 TCGATGTGAACTGATTGGAACA 57.998 40.909 0.00 0.00 0.00 3.18
5195 8472 4.690748 TCTTCGATGTGAACTGATTGGAAC 59.309 41.667 0.00 0.00 31.87 3.62
5196 8473 4.893608 TCTTCGATGTGAACTGATTGGAA 58.106 39.130 0.00 0.00 31.87 3.53
5197 8474 4.021104 ACTCTTCGATGTGAACTGATTGGA 60.021 41.667 7.30 0.00 31.87 3.53
5198 8475 4.248859 ACTCTTCGATGTGAACTGATTGG 58.751 43.478 7.30 0.00 31.87 3.16
5199 8476 6.096036 ACTACTCTTCGATGTGAACTGATTG 58.904 40.000 7.30 0.00 31.87 2.67
5200 8477 6.274157 ACTACTCTTCGATGTGAACTGATT 57.726 37.500 7.30 0.00 31.87 2.57
5201 8478 5.906113 ACTACTCTTCGATGTGAACTGAT 57.094 39.130 7.30 0.00 31.87 2.90
5202 8479 5.707242 AACTACTCTTCGATGTGAACTGA 57.293 39.130 7.30 0.00 31.87 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.