Multiple sequence alignment - TraesCS4A01G021800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G021800 chr4A 100.000 3977 0 0 1 3977 15656025 15652049 0.000000e+00 7345.0
1 TraesCS4A01G021800 chr4A 93.774 257 14 2 293 548 312188220 312188475 6.230000e-103 385.0
2 TraesCS4A01G021800 chr4A 84.884 172 26 0 123 294 658031562 658031391 1.470000e-39 174.0
3 TraesCS4A01G021800 chr4A 92.035 113 9 0 152 264 625483656 625483544 4.110000e-35 159.0
4 TraesCS4A01G021800 chr4A 94.118 34 2 0 1574 1607 602227562 602227595 7.000000e-03 52.8
5 TraesCS4A01G021800 chr4D 92.840 3352 122 51 690 3977 451279108 451282405 0.000000e+00 4752.0
6 TraesCS4A01G021800 chr4D 94.444 252 12 2 293 544 37936510 37936759 1.730000e-103 387.0
7 TraesCS4A01G021800 chr4D 94.118 255 12 3 289 543 414150008 414149757 6.230000e-103 385.0
8 TraesCS4A01G021800 chr4B 91.820 3154 140 36 539 3645 564866030 564869112 0.000000e+00 4287.0
9 TraesCS4A01G021800 chr6D 95.219 251 8 3 293 543 160793783 160794029 1.040000e-105 394.0
10 TraesCS4A01G021800 chr5A 95.219 251 9 3 293 543 642209712 642209959 1.040000e-105 394.0
11 TraesCS4A01G021800 chr5A 89.130 138 15 0 157 294 326040484 326040347 5.280000e-39 172.0
12 TraesCS4A01G021800 chr5A 79.581 191 35 4 1026 1213 631664332 631664521 2.490000e-27 134.0
13 TraesCS4A01G021800 chr5A 79.605 152 29 2 151 301 473308727 473308877 1.510000e-19 108.0
14 TraesCS4A01G021800 chr6A 94.821 251 11 2 293 543 8508103 8507855 1.340000e-104 390.0
15 TraesCS4A01G021800 chr6A 94.872 39 2 0 1570 1608 154857616 154857578 1.190000e-05 62.1
16 TraesCS4A01G021800 chr2A 94.821 251 12 1 293 543 551165931 551165682 1.340000e-104 390.0
17 TraesCS4A01G021800 chr7D 94.444 252 12 2 293 544 445784951 445784702 1.730000e-103 387.0
18 TraesCS4A01G021800 chr1A 94.444 252 13 1 293 544 64403728 64403478 1.730000e-103 387.0
19 TraesCS4A01G021800 chr1A 94.872 39 2 0 1570 1608 475411144 475411106 1.190000e-05 62.1
20 TraesCS4A01G021800 chr3A 86.316 285 38 1 19 302 736477786 736477502 3.860000e-80 309.0
21 TraesCS4A01G021800 chr3A 88.514 148 16 1 145 292 15824677 15824823 1.140000e-40 178.0
22 TraesCS4A01G021800 chr3A 90.476 126 12 0 145 270 15820697 15820822 2.460000e-37 167.0
23 TraesCS4A01G021800 chr3A 76.923 130 23 3 563 685 12035465 12035336 2.560000e-07 67.6
24 TraesCS4A01G021800 chr1B 85.765 281 35 3 19 294 440744593 440744313 3.890000e-75 292.0
25 TraesCS4A01G021800 chr7A 75.672 707 99 36 1979 2669 61491045 61490396 6.500000e-73 285.0
26 TraesCS4A01G021800 chr7A 75.565 708 98 40 1979 2669 109228102 109227453 3.030000e-71 279.0
27 TraesCS4A01G021800 chr7A 81.818 77 12 2 135 210 21614630 21614705 3.320000e-06 63.9
28 TraesCS4A01G021800 chr5B 79.024 205 38 5 1021 1221 632152864 632153067 6.930000e-28 135.0
29 TraesCS4A01G021800 chr5D 79.581 191 35 4 1026 1213 503669782 503669971 2.490000e-27 134.0
30 TraesCS4A01G021800 chr3B 78.866 194 40 1 1021 1213 212889142 212888949 3.230000e-26 130.0
31 TraesCS4A01G021800 chr2D 81.250 112 12 5 545 648 561050842 561050732 9.160000e-12 82.4
32 TraesCS4A01G021800 chr2D 94.872 39 2 0 1570 1608 436703706 436703744 1.190000e-05 62.1
33 TraesCS4A01G021800 chr2B 97.222 36 0 1 1574 1609 448132507 448132473 4.290000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G021800 chr4A 15652049 15656025 3976 True 7345 7345 100.000 1 3977 1 chr4A.!!$R1 3976
1 TraesCS4A01G021800 chr4D 451279108 451282405 3297 False 4752 4752 92.840 690 3977 1 chr4D.!!$F2 3287
2 TraesCS4A01G021800 chr4B 564866030 564869112 3082 False 4287 4287 91.820 539 3645 1 chr4B.!!$F1 3106
3 TraesCS4A01G021800 chr7A 61490396 61491045 649 True 285 285 75.672 1979 2669 1 chr7A.!!$R1 690
4 TraesCS4A01G021800 chr7A 109227453 109228102 649 True 279 279 75.565 1979 2669 1 chr7A.!!$R2 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.105760 ACCACATTGGCAGGAAACCA 60.106 50.000 0.0 0.0 42.67 3.67 F
570 571 0.255890 AGCTGGGCCGACACATTATT 59.744 50.000 0.0 0.0 0.00 1.40 F
1241 1257 0.317938 GATCCGTCGTCTTCCCATCG 60.318 60.000 0.0 0.0 0.00 3.84 F
1510 1548 2.094597 CCATCAAGGCATTTCTTTCGCA 60.095 45.455 0.0 0.0 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1892 1.065410 TGGCTTCAAAGAGGACCCCA 61.065 55.000 0.00 0.0 0.00 4.96 R
2067 2114 3.577848 ACTGACTGAATCTGCTTGACTCT 59.422 43.478 0.00 0.0 0.00 3.24 R
2748 2834 1.306148 AGATCGAATCGAGGTGCGTA 58.694 50.000 12.00 0.0 39.91 4.42 R
3351 3459 2.098233 CGCCGTACGGAATTGCAGT 61.098 57.895 37.62 0.0 38.44 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.321966 TGCATGGACGAACGGGCA 62.322 61.111 0.00 0.00 0.00 5.36
18 19 3.799755 GCATGGACGAACGGGCAC 61.800 66.667 0.00 0.00 0.00 5.01
19 20 2.047274 CATGGACGAACGGGCACT 60.047 61.111 0.00 0.00 0.00 4.40
20 21 2.047274 ATGGACGAACGGGCACTG 60.047 61.111 0.00 0.00 42.99 3.66
21 22 4.980805 TGGACGAACGGGCACTGC 62.981 66.667 0.00 0.00 39.14 4.40
22 23 4.681978 GGACGAACGGGCACTGCT 62.682 66.667 0.00 0.00 39.14 4.24
23 24 3.414700 GACGAACGGGCACTGCTG 61.415 66.667 0.00 0.00 39.14 4.41
24 25 4.235762 ACGAACGGGCACTGCTGT 62.236 61.111 0.00 0.00 39.14 4.40
25 26 2.972505 CGAACGGGCACTGCTGTT 60.973 61.111 10.65 10.65 39.14 3.16
26 27 2.946762 GAACGGGCACTGCTGTTC 59.053 61.111 17.81 17.81 39.14 3.18
27 28 1.598130 GAACGGGCACTGCTGTTCT 60.598 57.895 22.04 3.00 39.14 3.01
28 29 1.845809 GAACGGGCACTGCTGTTCTG 61.846 60.000 22.04 7.16 39.14 3.02
29 30 3.730761 CGGGCACTGCTGTTCTGC 61.731 66.667 0.00 0.00 0.00 4.26
30 31 2.282040 GGGCACTGCTGTTCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
31 32 1.900498 GGGCACTGCTGTTCTGCTT 60.900 57.895 0.00 0.00 0.00 3.91
32 33 1.285023 GGCACTGCTGTTCTGCTTG 59.715 57.895 0.00 2.59 0.00 4.01
33 34 1.450531 GGCACTGCTGTTCTGCTTGT 61.451 55.000 0.00 0.78 0.00 3.16
34 35 0.317603 GCACTGCTGTTCTGCTTGTG 60.318 55.000 16.32 16.32 39.26 3.33
35 36 0.309922 CACTGCTGTTCTGCTTGTGG 59.690 55.000 0.00 0.00 35.89 4.17
36 37 0.820891 ACTGCTGTTCTGCTTGTGGG 60.821 55.000 0.00 0.00 0.00 4.61
37 38 2.138656 CTGCTGTTCTGCTTGTGGGC 62.139 60.000 3.65 0.00 0.00 5.36
38 39 2.924105 GCTGTTCTGCTTGTGGGCC 61.924 63.158 0.00 0.00 0.00 5.80
39 40 2.203480 TGTTCTGCTTGTGGGCCC 60.203 61.111 17.59 17.59 0.00 5.80
40 41 2.203480 GTTCTGCTTGTGGGCCCA 60.203 61.111 24.45 24.45 0.00 5.36
41 42 1.607467 GTTCTGCTTGTGGGCCCAT 60.607 57.895 31.45 0.00 0.00 4.00
42 43 1.607178 TTCTGCTTGTGGGCCCATG 60.607 57.895 31.45 21.80 0.00 3.66
43 44 2.036098 CTGCTTGTGGGCCCATGA 59.964 61.111 31.45 18.81 0.00 3.07
44 45 2.036098 TGCTTGTGGGCCCATGAG 59.964 61.111 31.45 27.73 0.00 2.90
45 46 2.757099 GCTTGTGGGCCCATGAGG 60.757 66.667 31.45 19.20 39.47 3.86
57 58 4.891727 ATGAGGCGGCGGCGTAAG 62.892 66.667 32.35 5.09 41.24 2.34
64 65 4.097863 GGCGGCGTAAGTGGCAAC 62.098 66.667 9.37 0.00 39.00 4.17
65 66 4.097863 GCGGCGTAAGTGGCAACC 62.098 66.667 9.37 0.00 41.68 3.77
66 67 3.784412 CGGCGTAAGTGGCAACCG 61.784 66.667 0.00 0.00 41.68 4.44
67 68 3.428282 GGCGTAAGTGGCAACCGG 61.428 66.667 0.00 0.00 41.68 5.28
68 69 3.428282 GCGTAAGTGGCAACCGGG 61.428 66.667 6.32 0.00 41.68 5.73
69 70 2.344500 CGTAAGTGGCAACCGGGA 59.656 61.111 6.32 0.00 0.00 5.14
70 71 1.740296 CGTAAGTGGCAACCGGGAG 60.740 63.158 6.32 0.00 0.00 4.30
71 72 2.038837 GTAAGTGGCAACCGGGAGC 61.039 63.158 6.32 9.44 0.00 4.70
72 73 3.599285 TAAGTGGCAACCGGGAGCG 62.599 63.158 6.32 0.00 0.00 5.03
76 77 4.778143 GGCAACCGGGAGCGTGAT 62.778 66.667 6.32 0.00 0.00 3.06
77 78 3.499737 GCAACCGGGAGCGTGATG 61.500 66.667 6.32 0.00 0.00 3.07
78 79 2.264480 CAACCGGGAGCGTGATGA 59.736 61.111 6.32 0.00 0.00 2.92
79 80 1.811266 CAACCGGGAGCGTGATGAG 60.811 63.158 6.32 0.00 0.00 2.90
80 81 1.982395 AACCGGGAGCGTGATGAGA 60.982 57.895 6.32 0.00 0.00 3.27
81 82 2.105128 CCGGGAGCGTGATGAGAC 59.895 66.667 0.00 0.00 0.00 3.36
82 83 2.418910 CCGGGAGCGTGATGAGACT 61.419 63.158 0.00 0.00 0.00 3.24
83 84 1.226802 CGGGAGCGTGATGAGACTG 60.227 63.158 0.00 0.00 0.00 3.51
84 85 1.142748 GGGAGCGTGATGAGACTGG 59.857 63.158 0.00 0.00 0.00 4.00
85 86 1.520342 GGAGCGTGATGAGACTGGC 60.520 63.158 0.00 0.00 0.00 4.85
86 87 1.216444 GAGCGTGATGAGACTGGCA 59.784 57.895 0.00 0.00 0.00 4.92
87 88 0.805322 GAGCGTGATGAGACTGGCAG 60.805 60.000 14.16 14.16 0.00 4.85
88 89 2.459442 GCGTGATGAGACTGGCAGC 61.459 63.158 15.89 7.65 0.00 5.25
89 90 2.163390 CGTGATGAGACTGGCAGCG 61.163 63.158 15.89 3.26 0.00 5.18
90 91 2.125391 TGATGAGACTGGCAGCGC 60.125 61.111 15.89 9.90 0.00 5.92
91 92 3.260483 GATGAGACTGGCAGCGCG 61.260 66.667 15.89 0.00 0.00 6.86
102 103 3.659092 CAGCGCGCAACCTTTCCA 61.659 61.111 35.10 0.00 0.00 3.53
103 104 3.357079 AGCGCGCAACCTTTCCAG 61.357 61.111 35.10 0.00 0.00 3.86
105 106 4.404654 CGCGCAACCTTTCCAGGC 62.405 66.667 8.75 0.00 45.56 4.85
106 107 2.985847 GCGCAACCTTTCCAGGCT 60.986 61.111 0.30 0.00 45.56 4.58
107 108 2.982744 GCGCAACCTTTCCAGGCTC 61.983 63.158 0.30 0.00 45.56 4.70
108 109 1.302832 CGCAACCTTTCCAGGCTCT 60.303 57.895 0.00 0.00 45.56 4.09
109 110 1.301677 CGCAACCTTTCCAGGCTCTC 61.302 60.000 0.00 0.00 45.56 3.20
110 111 0.250901 GCAACCTTTCCAGGCTCTCA 60.251 55.000 0.00 0.00 45.56 3.27
111 112 1.528129 CAACCTTTCCAGGCTCTCAC 58.472 55.000 0.00 0.00 45.56 3.51
112 113 1.072965 CAACCTTTCCAGGCTCTCACT 59.927 52.381 0.00 0.00 45.56 3.41
113 114 1.439543 ACCTTTCCAGGCTCTCACTT 58.560 50.000 0.00 0.00 45.56 3.16
114 115 1.777272 ACCTTTCCAGGCTCTCACTTT 59.223 47.619 0.00 0.00 45.56 2.66
115 116 2.175715 ACCTTTCCAGGCTCTCACTTTT 59.824 45.455 0.00 0.00 45.56 2.27
116 117 3.225940 CCTTTCCAGGCTCTCACTTTTT 58.774 45.455 0.00 0.00 31.53 1.94
141 142 9.826574 TTTCTGTAGTGAATACCATAATACCAC 57.173 33.333 0.00 0.00 33.01 4.16
142 143 8.541899 TCTGTAGTGAATACCATAATACCACA 57.458 34.615 0.00 0.00 33.01 4.17
143 144 8.418662 TCTGTAGTGAATACCATAATACCACAC 58.581 37.037 0.00 0.00 33.01 3.82
144 145 7.502696 TGTAGTGAATACCATAATACCACACC 58.497 38.462 0.00 0.00 33.01 4.16
145 146 6.569127 AGTGAATACCATAATACCACACCA 57.431 37.500 0.00 0.00 0.00 4.17
146 147 6.354130 AGTGAATACCATAATACCACACCAC 58.646 40.000 0.00 0.00 0.00 4.16
147 148 6.069905 AGTGAATACCATAATACCACACCACA 60.070 38.462 0.00 0.00 0.00 4.17
148 149 6.770785 GTGAATACCATAATACCACACCACAT 59.229 38.462 0.00 0.00 0.00 3.21
149 150 7.284489 GTGAATACCATAATACCACACCACATT 59.716 37.037 0.00 0.00 0.00 2.71
150 151 7.284261 TGAATACCATAATACCACACCACATTG 59.716 37.037 0.00 0.00 0.00 2.82
151 152 4.277476 ACCATAATACCACACCACATTGG 58.723 43.478 0.00 0.00 45.02 3.16
152 153 3.068024 CCATAATACCACACCACATTGGC 59.932 47.826 0.00 0.00 42.67 4.52
153 154 2.300956 AATACCACACCACATTGGCA 57.699 45.000 0.00 0.00 42.67 4.92
154 155 1.838112 ATACCACACCACATTGGCAG 58.162 50.000 0.00 0.00 42.67 4.85
155 156 0.251121 TACCACACCACATTGGCAGG 60.251 55.000 0.00 0.00 42.67 4.85
156 157 1.228521 CCACACCACATTGGCAGGA 60.229 57.895 0.00 0.00 42.67 3.86
157 158 0.827089 CCACACCACATTGGCAGGAA 60.827 55.000 0.00 0.00 42.67 3.36
158 159 1.039068 CACACCACATTGGCAGGAAA 58.961 50.000 0.00 0.00 42.67 3.13
159 160 1.039856 ACACCACATTGGCAGGAAAC 58.960 50.000 0.00 0.00 42.67 2.78
160 161 0.318120 CACCACATTGGCAGGAAACC 59.682 55.000 0.00 0.00 42.67 3.27
161 162 0.105760 ACCACATTGGCAGGAAACCA 60.106 50.000 0.00 0.00 42.67 3.67
162 163 1.269012 CCACATTGGCAGGAAACCAT 58.731 50.000 0.00 0.00 36.96 3.55
163 164 1.205417 CCACATTGGCAGGAAACCATC 59.795 52.381 0.00 0.00 36.96 3.51
164 165 2.173519 CACATTGGCAGGAAACCATCT 58.826 47.619 0.00 0.00 36.96 2.90
165 166 3.355378 CACATTGGCAGGAAACCATCTA 58.645 45.455 0.00 0.00 36.96 1.98
166 167 3.763360 CACATTGGCAGGAAACCATCTAA 59.237 43.478 0.00 0.00 36.96 2.10
167 168 4.220382 CACATTGGCAGGAAACCATCTAAA 59.780 41.667 0.00 0.00 36.96 1.85
168 169 4.837860 ACATTGGCAGGAAACCATCTAAAA 59.162 37.500 0.00 0.00 36.96 1.52
169 170 4.864704 TTGGCAGGAAACCATCTAAAAC 57.135 40.909 0.00 0.00 36.96 2.43
170 171 3.838565 TGGCAGGAAACCATCTAAAACA 58.161 40.909 0.00 0.00 30.29 2.83
171 172 3.826157 TGGCAGGAAACCATCTAAAACAG 59.174 43.478 0.00 0.00 30.29 3.16
172 173 3.367395 GGCAGGAAACCATCTAAAACAGC 60.367 47.826 0.00 0.00 0.00 4.40
173 174 3.255642 GCAGGAAACCATCTAAAACAGCA 59.744 43.478 0.00 0.00 0.00 4.41
174 175 4.798574 CAGGAAACCATCTAAAACAGCAC 58.201 43.478 0.00 0.00 0.00 4.40
175 176 3.502211 AGGAAACCATCTAAAACAGCACG 59.498 43.478 0.00 0.00 0.00 5.34
176 177 3.500680 GGAAACCATCTAAAACAGCACGA 59.499 43.478 0.00 0.00 0.00 4.35
177 178 4.378459 GGAAACCATCTAAAACAGCACGAG 60.378 45.833 0.00 0.00 0.00 4.18
178 179 2.699954 ACCATCTAAAACAGCACGAGG 58.300 47.619 0.00 0.00 0.00 4.63
179 180 2.009774 CCATCTAAAACAGCACGAGGG 58.990 52.381 0.00 0.00 0.00 4.30
180 181 2.354704 CCATCTAAAACAGCACGAGGGA 60.355 50.000 0.00 0.00 0.00 4.20
181 182 3.535561 CATCTAAAACAGCACGAGGGAT 58.464 45.455 0.00 0.00 0.00 3.85
182 183 3.695830 TCTAAAACAGCACGAGGGATT 57.304 42.857 0.00 0.00 0.00 3.01
183 184 4.811969 TCTAAAACAGCACGAGGGATTA 57.188 40.909 0.00 0.00 0.00 1.75
184 185 5.155278 TCTAAAACAGCACGAGGGATTAA 57.845 39.130 0.00 0.00 0.00 1.40
185 186 5.553123 TCTAAAACAGCACGAGGGATTAAA 58.447 37.500 0.00 0.00 0.00 1.52
186 187 4.499037 AAAACAGCACGAGGGATTAAAC 57.501 40.909 0.00 0.00 0.00 2.01
187 188 3.418684 AACAGCACGAGGGATTAAACT 57.581 42.857 0.00 0.00 0.00 2.66
188 189 3.418684 ACAGCACGAGGGATTAAACTT 57.581 42.857 0.00 0.00 0.00 2.66
189 190 4.546829 ACAGCACGAGGGATTAAACTTA 57.453 40.909 0.00 0.00 0.00 2.24
190 191 5.099042 ACAGCACGAGGGATTAAACTTAT 57.901 39.130 0.00 0.00 0.00 1.73
191 192 5.116882 ACAGCACGAGGGATTAAACTTATC 58.883 41.667 0.00 0.00 0.00 1.75
192 193 4.511826 CAGCACGAGGGATTAAACTTATCC 59.488 45.833 0.00 0.00 0.00 2.59
193 194 3.493503 GCACGAGGGATTAAACTTATCCG 59.506 47.826 0.00 0.00 35.37 4.18
194 195 4.056050 CACGAGGGATTAAACTTATCCGG 58.944 47.826 0.00 0.00 35.37 5.14
195 196 3.708121 ACGAGGGATTAAACTTATCCGGT 59.292 43.478 0.00 0.00 35.37 5.28
196 197 4.162888 ACGAGGGATTAAACTTATCCGGTT 59.837 41.667 0.00 0.00 35.37 4.44
197 198 5.121105 CGAGGGATTAAACTTATCCGGTTT 58.879 41.667 0.00 0.00 39.70 3.27
198 199 5.587443 CGAGGGATTAAACTTATCCGGTTTT 59.413 40.000 0.00 0.00 37.88 2.43
199 200 6.762661 CGAGGGATTAAACTTATCCGGTTTTA 59.237 38.462 0.00 0.00 37.88 1.52
200 201 7.280652 CGAGGGATTAAACTTATCCGGTTTTAA 59.719 37.037 0.00 5.86 37.88 1.52
201 202 8.882557 AGGGATTAAACTTATCCGGTTTTAAA 57.117 30.769 0.00 0.00 37.88 1.52
202 203 9.311676 AGGGATTAAACTTATCCGGTTTTAAAA 57.688 29.630 0.00 0.00 37.88 1.52
203 204 9.577110 GGGATTAAACTTATCCGGTTTTAAAAG 57.423 33.333 0.00 0.00 37.88 2.27
209 210 8.557592 AACTTATCCGGTTTTAAAAGTAGAGG 57.442 34.615 0.00 1.42 0.00 3.69
210 211 7.108194 ACTTATCCGGTTTTAAAAGTAGAGGG 58.892 38.462 0.00 0.00 0.00 4.30
211 212 5.767277 ATCCGGTTTTAAAAGTAGAGGGA 57.233 39.130 0.00 3.00 0.00 4.20
212 213 4.898320 TCCGGTTTTAAAAGTAGAGGGAC 58.102 43.478 0.00 0.00 0.00 4.46
213 214 4.347583 TCCGGTTTTAAAAGTAGAGGGACA 59.652 41.667 0.00 0.00 0.00 4.02
214 215 5.065235 CCGGTTTTAAAAGTAGAGGGACAA 58.935 41.667 0.00 0.00 0.00 3.18
215 216 5.049198 CCGGTTTTAAAAGTAGAGGGACAAC 60.049 44.000 0.00 0.00 0.00 3.32
216 217 5.333568 CGGTTTTAAAAGTAGAGGGACAACG 60.334 44.000 0.00 0.00 0.00 4.10
217 218 5.528690 GGTTTTAAAAGTAGAGGGACAACGT 59.471 40.000 0.00 0.00 0.00 3.99
218 219 6.038603 GGTTTTAAAAGTAGAGGGACAACGTT 59.961 38.462 0.00 0.00 0.00 3.99
219 220 7.415541 GGTTTTAAAAGTAGAGGGACAACGTTT 60.416 37.037 0.00 0.00 0.00 3.60
220 221 7.628769 TTTAAAAGTAGAGGGACAACGTTTT 57.371 32.000 0.00 0.00 0.00 2.43
221 222 5.494632 AAAAGTAGAGGGACAACGTTTTG 57.505 39.130 0.00 0.00 38.83 2.44
222 223 2.490991 AGTAGAGGGACAACGTTTTGC 58.509 47.619 0.00 0.00 36.00 3.68
223 224 2.104281 AGTAGAGGGACAACGTTTTGCT 59.896 45.455 0.00 0.00 36.00 3.91
224 225 1.308998 AGAGGGACAACGTTTTGCTG 58.691 50.000 0.00 0.00 36.00 4.41
225 226 0.310854 GAGGGACAACGTTTTGCTGG 59.689 55.000 0.00 0.00 36.00 4.85
226 227 0.395173 AGGGACAACGTTTTGCTGGT 60.395 50.000 0.00 0.00 36.00 4.00
227 228 0.458260 GGGACAACGTTTTGCTGGTT 59.542 50.000 0.00 0.00 36.00 3.67
228 229 1.134936 GGGACAACGTTTTGCTGGTTT 60.135 47.619 0.00 0.00 36.00 3.27
229 230 2.612604 GGACAACGTTTTGCTGGTTTT 58.387 42.857 0.00 0.00 36.00 2.43
230 231 3.429135 GGGACAACGTTTTGCTGGTTTTA 60.429 43.478 0.00 0.00 36.00 1.52
231 232 3.794564 GGACAACGTTTTGCTGGTTTTAG 59.205 43.478 0.00 0.00 36.00 1.85
232 233 4.439016 GGACAACGTTTTGCTGGTTTTAGA 60.439 41.667 0.00 0.00 36.00 2.10
233 234 4.668289 ACAACGTTTTGCTGGTTTTAGAG 58.332 39.130 0.00 0.00 36.00 2.43
234 235 4.157105 ACAACGTTTTGCTGGTTTTAGAGT 59.843 37.500 0.00 0.00 36.00 3.24
235 236 4.976224 ACGTTTTGCTGGTTTTAGAGTT 57.024 36.364 0.00 0.00 0.00 3.01
236 237 6.127952 ACAACGTTTTGCTGGTTTTAGAGTTA 60.128 34.615 0.00 0.00 36.00 2.24
237 238 6.439675 ACGTTTTGCTGGTTTTAGAGTTAA 57.560 33.333 0.00 0.00 0.00 2.01
238 239 6.492254 ACGTTTTGCTGGTTTTAGAGTTAAG 58.508 36.000 0.00 0.00 0.00 1.85
239 240 5.912955 CGTTTTGCTGGTTTTAGAGTTAAGG 59.087 40.000 0.00 0.00 0.00 2.69
240 241 6.213677 GTTTTGCTGGTTTTAGAGTTAAGGG 58.786 40.000 0.00 0.00 0.00 3.95
241 242 4.986054 TGCTGGTTTTAGAGTTAAGGGA 57.014 40.909 0.00 0.00 0.00 4.20
242 243 4.648651 TGCTGGTTTTAGAGTTAAGGGAC 58.351 43.478 0.00 0.00 0.00 4.46
243 244 4.008330 GCTGGTTTTAGAGTTAAGGGACC 58.992 47.826 0.00 0.00 0.00 4.46
244 245 4.506095 GCTGGTTTTAGAGTTAAGGGACCA 60.506 45.833 0.00 0.00 32.25 4.02
245 246 5.806734 GCTGGTTTTAGAGTTAAGGGACCAT 60.807 44.000 0.00 0.00 32.51 3.55
246 247 6.208840 TGGTTTTAGAGTTAAGGGACCATT 57.791 37.500 0.00 0.00 30.13 3.16
247 248 6.616577 TGGTTTTAGAGTTAAGGGACCATTT 58.383 36.000 0.00 0.00 30.13 2.32
248 249 6.717997 TGGTTTTAGAGTTAAGGGACCATTTC 59.282 38.462 0.00 0.00 30.13 2.17
249 250 6.946583 GGTTTTAGAGTTAAGGGACCATTTCT 59.053 38.462 0.00 0.00 0.00 2.52
250 251 7.120873 GGTTTTAGAGTTAAGGGACCATTTCTC 59.879 40.741 12.67 12.67 0.00 2.87
251 252 7.569599 TTTAGAGTTAAGGGACCATTTCTCT 57.430 36.000 21.23 21.23 36.10 3.10
252 253 8.674925 TTTAGAGTTAAGGGACCATTTCTCTA 57.325 34.615 19.86 19.86 31.62 2.43
253 254 6.547930 AGAGTTAAGGGACCATTTCTCTAC 57.452 41.667 18.22 3.38 31.62 2.59
254 255 6.265304 AGAGTTAAGGGACCATTTCTCTACT 58.735 40.000 18.22 7.06 31.62 2.57
255 256 6.731448 AGAGTTAAGGGACCATTTCTCTACTT 59.269 38.462 18.22 2.88 31.62 2.24
256 257 7.237887 AGAGTTAAGGGACCATTTCTCTACTTT 59.762 37.037 18.22 2.49 31.62 2.66
257 258 7.395617 AGTTAAGGGACCATTTCTCTACTTTC 58.604 38.462 0.00 0.00 31.62 2.62
258 259 5.843019 AAGGGACCATTTCTCTACTTTCA 57.157 39.130 0.00 0.00 31.62 2.69
259 260 5.843019 AGGGACCATTTCTCTACTTTCAA 57.157 39.130 0.00 0.00 30.70 2.69
260 261 6.200878 AGGGACCATTTCTCTACTTTCAAA 57.799 37.500 0.00 0.00 30.70 2.69
261 262 6.610830 AGGGACCATTTCTCTACTTTCAAAA 58.389 36.000 0.00 0.00 30.70 2.44
262 263 6.717084 AGGGACCATTTCTCTACTTTCAAAAG 59.283 38.462 0.97 0.97 41.73 2.27
263 264 6.715264 GGGACCATTTCTCTACTTTCAAAAGA 59.285 38.462 9.39 0.00 39.31 2.52
264 265 7.094592 GGGACCATTTCTCTACTTTCAAAAGAG 60.095 40.741 9.39 2.87 39.31 2.85
265 266 7.445707 GGACCATTTCTCTACTTTCAAAAGAGT 59.554 37.037 9.39 0.00 39.31 3.24
266 267 8.753497 ACCATTTCTCTACTTTCAAAAGAGTT 57.247 30.769 9.39 0.00 39.31 3.01
267 268 9.847224 ACCATTTCTCTACTTTCAAAAGAGTTA 57.153 29.630 9.39 0.00 39.31 2.24
271 272 8.904099 TTCTCTACTTTCAAAAGAGTTAAGGG 57.096 34.615 9.39 0.12 39.31 3.95
272 273 8.258850 TCTCTACTTTCAAAAGAGTTAAGGGA 57.741 34.615 9.39 2.12 39.31 4.20
273 274 8.148999 TCTCTACTTTCAAAAGAGTTAAGGGAC 58.851 37.037 9.39 0.00 39.31 4.46
274 275 7.798071 TCTACTTTCAAAAGAGTTAAGGGACA 58.202 34.615 9.39 0.00 39.31 4.02
275 276 6.944234 ACTTTCAAAAGAGTTAAGGGACAG 57.056 37.500 9.39 0.00 39.31 3.51
276 277 6.659824 ACTTTCAAAAGAGTTAAGGGACAGA 58.340 36.000 9.39 0.00 39.31 3.41
277 278 7.116736 ACTTTCAAAAGAGTTAAGGGACAGAA 58.883 34.615 9.39 0.00 39.31 3.02
278 279 7.614192 ACTTTCAAAAGAGTTAAGGGACAGAAA 59.386 33.333 9.39 0.00 39.31 2.52
279 280 7.948034 TTCAAAAGAGTTAAGGGACAGAAAA 57.052 32.000 0.00 0.00 0.00 2.29
280 281 8.533569 TTCAAAAGAGTTAAGGGACAGAAAAT 57.466 30.769 0.00 0.00 0.00 1.82
281 282 9.635404 TTCAAAAGAGTTAAGGGACAGAAAATA 57.365 29.630 0.00 0.00 0.00 1.40
282 283 9.807921 TCAAAAGAGTTAAGGGACAGAAAATAT 57.192 29.630 0.00 0.00 0.00 1.28
291 292 7.956328 AAGGGACAGAAAATATACTTTTCCC 57.044 36.000 6.76 6.76 38.74 3.97
292 293 7.285340 AGGGACAGAAAATATACTTTTCCCT 57.715 36.000 10.38 10.38 39.50 4.20
293 294 7.709601 AGGGACAGAAAATATACTTTTCCCTT 58.290 34.615 10.38 3.83 40.52 3.95
294 295 7.834681 AGGGACAGAAAATATACTTTTCCCTTC 59.165 37.037 10.38 7.61 40.52 3.46
295 296 7.834681 GGGACAGAAAATATACTTTTCCCTTCT 59.165 37.037 7.40 0.00 38.74 2.85
296 297 9.244292 GGACAGAAAATATACTTTTCCCTTCTT 57.756 33.333 12.71 0.00 38.74 2.52
305 306 7.683437 ATACTTTTCCCTTCTTTTTACTCCG 57.317 36.000 0.00 0.00 0.00 4.63
306 307 4.277672 ACTTTTCCCTTCTTTTTACTCCGC 59.722 41.667 0.00 0.00 0.00 5.54
307 308 3.495434 TTCCCTTCTTTTTACTCCGCA 57.505 42.857 0.00 0.00 0.00 5.69
308 309 3.713826 TCCCTTCTTTTTACTCCGCAT 57.286 42.857 0.00 0.00 0.00 4.73
309 310 4.829872 TCCCTTCTTTTTACTCCGCATA 57.170 40.909 0.00 0.00 0.00 3.14
310 311 5.367945 TCCCTTCTTTTTACTCCGCATAT 57.632 39.130 0.00 0.00 0.00 1.78
311 312 6.488769 TCCCTTCTTTTTACTCCGCATATA 57.511 37.500 0.00 0.00 0.00 0.86
312 313 6.891388 TCCCTTCTTTTTACTCCGCATATAA 58.109 36.000 0.00 0.00 0.00 0.98
313 314 6.990349 TCCCTTCTTTTTACTCCGCATATAAG 59.010 38.462 0.00 0.00 0.00 1.73
314 315 6.990349 CCCTTCTTTTTACTCCGCATATAAGA 59.010 38.462 0.00 0.00 0.00 2.10
315 316 7.661847 CCCTTCTTTTTACTCCGCATATAAGAT 59.338 37.037 0.00 0.00 0.00 2.40
316 317 9.057089 CCTTCTTTTTACTCCGCATATAAGATT 57.943 33.333 0.00 0.00 0.00 2.40
319 320 9.607988 TCTTTTTACTCCGCATATAAGATTTGA 57.392 29.630 0.00 0.00 0.00 2.69
322 323 9.554395 TTTTACTCCGCATATAAGATTTGATCA 57.446 29.630 0.00 0.00 0.00 2.92
323 324 9.554395 TTTACTCCGCATATAAGATTTGATCAA 57.446 29.630 3.38 3.38 0.00 2.57
324 325 9.554395 TTACTCCGCATATAAGATTTGATCAAA 57.446 29.630 22.52 22.52 34.46 2.69
325 326 8.092521 ACTCCGCATATAAGATTTGATCAAAG 57.907 34.615 24.17 10.49 33.32 2.77
326 327 7.716998 ACTCCGCATATAAGATTTGATCAAAGT 59.283 33.333 24.17 14.86 33.32 2.66
327 328 8.087982 TCCGCATATAAGATTTGATCAAAGTC 57.912 34.615 24.17 19.70 33.32 3.01
328 329 7.714813 TCCGCATATAAGATTTGATCAAAGTCA 59.285 33.333 24.17 11.02 33.32 3.41
329 330 8.344831 CCGCATATAAGATTTGATCAAAGTCAA 58.655 33.333 24.17 11.64 36.38 3.18
337 338 4.979943 TTGATCAAAGTCAAACTGCACA 57.020 36.364 5.45 0.00 35.31 4.57
338 339 4.979943 TGATCAAAGTCAAACTGCACAA 57.020 36.364 0.00 0.00 0.00 3.33
339 340 5.321959 TGATCAAAGTCAAACTGCACAAA 57.678 34.783 0.00 0.00 0.00 2.83
340 341 5.342433 TGATCAAAGTCAAACTGCACAAAG 58.658 37.500 0.00 0.00 0.00 2.77
341 342 4.782019 TCAAAGTCAAACTGCACAAAGT 57.218 36.364 0.00 0.00 0.00 2.66
342 343 5.132897 TCAAAGTCAAACTGCACAAAGTT 57.867 34.783 0.00 0.00 42.21 2.66
352 353 7.614124 AAACTGCACAAAGTTTGATCAAATT 57.386 28.000 23.05 16.65 46.16 1.82
353 354 7.614124 AACTGCACAAAGTTTGATCAAATTT 57.386 28.000 23.05 21.31 37.05 1.82
354 355 8.715191 AACTGCACAAAGTTTGATCAAATTTA 57.285 26.923 24.07 11.08 37.05 1.40
355 356 8.891671 ACTGCACAAAGTTTGATCAAATTTAT 57.108 26.923 24.07 15.16 31.37 1.40
356 357 9.979578 ACTGCACAAAGTTTGATCAAATTTATA 57.020 25.926 24.07 11.33 31.37 0.98
419 420 3.822594 TGAACATACATTTCGTGGTGC 57.177 42.857 0.00 0.00 0.00 5.01
420 421 3.142174 TGAACATACATTTCGTGGTGCA 58.858 40.909 0.00 0.00 0.00 4.57
421 422 3.755905 TGAACATACATTTCGTGGTGCAT 59.244 39.130 0.00 0.00 0.00 3.96
422 423 4.142708 TGAACATACATTTCGTGGTGCATC 60.143 41.667 0.00 0.00 0.00 3.91
423 424 3.609853 ACATACATTTCGTGGTGCATCT 58.390 40.909 0.00 0.00 0.00 2.90
424 425 3.374988 ACATACATTTCGTGGTGCATCTG 59.625 43.478 0.00 0.00 0.00 2.90
425 426 2.183478 ACATTTCGTGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
426 427 2.715046 ACATTTCGTGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
427 428 3.872696 ACATTTCGTGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
428 429 4.260985 ACATTTCGTGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
429 430 4.883585 ACATTTCGTGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
430 431 6.054941 ACATTTCGTGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
431 432 6.712095 ACATTTCGTGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
432 433 7.229306 ACATTTCGTGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
433 434 6.544038 TTCGTGGTGCATCTGATAATATTG 57.456 37.500 0.00 0.00 0.00 1.90
434 435 5.852827 TCGTGGTGCATCTGATAATATTGA 58.147 37.500 0.00 0.00 0.00 2.57
435 436 6.466812 TCGTGGTGCATCTGATAATATTGAT 58.533 36.000 0.00 0.00 0.00 2.57
436 437 6.936335 TCGTGGTGCATCTGATAATATTGATT 59.064 34.615 0.00 0.00 0.00 2.57
437 438 7.445096 TCGTGGTGCATCTGATAATATTGATTT 59.555 33.333 0.00 0.00 0.00 2.17
438 439 7.747799 CGTGGTGCATCTGATAATATTGATTTC 59.252 37.037 0.00 0.00 0.00 2.17
439 440 8.570488 GTGGTGCATCTGATAATATTGATTTCA 58.430 33.333 0.00 0.00 0.00 2.69
440 441 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
496 497 8.276252 AGTTAGTCAAACTTTACAAAGCTTGA 57.724 30.769 13.75 13.75 46.61 3.02
509 510 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
510 511 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
511 512 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
512 513 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
513 514 4.338400 AGCTTGACTTTGACCAAACCTTAC 59.662 41.667 0.00 0.00 0.00 2.34
514 515 4.097286 GCTTGACTTTGACCAAACCTTACA 59.903 41.667 0.00 0.00 0.00 2.41
515 516 5.221244 GCTTGACTTTGACCAAACCTTACAT 60.221 40.000 0.00 0.00 0.00 2.29
516 517 5.766150 TGACTTTGACCAAACCTTACATG 57.234 39.130 0.00 0.00 0.00 3.21
517 518 4.037446 TGACTTTGACCAAACCTTACATGC 59.963 41.667 0.00 0.00 0.00 4.06
518 519 3.004315 ACTTTGACCAAACCTTACATGCG 59.996 43.478 0.00 0.00 0.00 4.73
519 520 1.529226 TGACCAAACCTTACATGCGG 58.471 50.000 0.00 0.00 0.00 5.69
520 521 1.072489 TGACCAAACCTTACATGCGGA 59.928 47.619 0.00 0.00 0.00 5.54
521 522 1.467342 GACCAAACCTTACATGCGGAC 59.533 52.381 0.00 0.00 0.00 4.79
522 523 1.073284 ACCAAACCTTACATGCGGACT 59.927 47.619 0.00 0.00 0.00 3.85
523 524 2.303600 ACCAAACCTTACATGCGGACTA 59.696 45.455 0.00 0.00 0.00 2.59
524 525 3.244630 ACCAAACCTTACATGCGGACTAA 60.245 43.478 0.00 0.00 0.00 2.24
525 526 3.754323 CCAAACCTTACATGCGGACTAAA 59.246 43.478 0.00 0.00 0.00 1.85
526 527 4.216687 CCAAACCTTACATGCGGACTAAAA 59.783 41.667 0.00 0.00 0.00 1.52
527 528 5.278561 CCAAACCTTACATGCGGACTAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
528 529 5.622770 AACCTTACATGCGGACTAAAAAG 57.377 39.130 0.00 0.00 0.00 2.27
529 530 4.901868 ACCTTACATGCGGACTAAAAAGA 58.098 39.130 0.00 0.00 0.00 2.52
530 531 5.310451 ACCTTACATGCGGACTAAAAAGAA 58.690 37.500 0.00 0.00 0.00 2.52
531 532 5.766174 ACCTTACATGCGGACTAAAAAGAAA 59.234 36.000 0.00 0.00 0.00 2.52
532 533 6.084277 CCTTACATGCGGACTAAAAAGAAAC 58.916 40.000 0.00 0.00 0.00 2.78
533 534 4.141855 ACATGCGGACTAAAAAGAAACG 57.858 40.909 0.00 0.00 0.00 3.60
534 535 3.058501 ACATGCGGACTAAAAAGAAACGG 60.059 43.478 0.00 0.00 0.00 4.44
535 536 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
536 537 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
537 538 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
543 544 6.370186 ACTAAAAAGAAACGGAGGGAGTAT 57.630 37.500 0.00 0.00 0.00 2.12
546 547 4.739587 AAAGAAACGGAGGGAGTATCTC 57.260 45.455 0.00 0.00 33.92 2.75
556 557 1.243902 GGAGTATCTCCGAGAGCTGG 58.756 60.000 4.07 0.00 41.08 4.85
570 571 0.255890 AGCTGGGCCGACACATTATT 59.744 50.000 0.00 0.00 0.00 1.40
575 576 3.157881 TGGGCCGACACATTATTTTGAA 58.842 40.909 0.00 0.00 0.00 2.69
581 582 6.183360 GGCCGACACATTATTTTGAAATTGAC 60.183 38.462 0.00 0.00 0.00 3.18
582 583 6.452350 GCCGACACATTATTTTGAAATTGACG 60.452 38.462 0.00 0.46 0.00 4.35
601 602 1.719780 CGAAGTCGCCACTTTGTAGTC 59.280 52.381 0.00 0.00 43.37 2.59
602 603 1.719780 GAAGTCGCCACTTTGTAGTCG 59.280 52.381 0.00 0.00 43.37 4.18
605 608 1.654105 GTCGCCACTTTGTAGTCGATG 59.346 52.381 0.00 0.00 34.46 3.84
615 618 5.401674 ACTTTGTAGTCGATGAAAACGTCTC 59.598 40.000 0.00 0.00 32.50 3.36
619 622 3.991367 AGTCGATGAAAACGTCTCCTTT 58.009 40.909 0.00 0.00 32.26 3.11
620 623 4.377897 AGTCGATGAAAACGTCTCCTTTT 58.622 39.130 0.00 0.00 32.26 2.27
625 628 5.404366 CGATGAAAACGTCTCCTTTTACTGA 59.596 40.000 0.00 0.00 0.00 3.41
627 630 7.360101 CGATGAAAACGTCTCCTTTTACTGAAT 60.360 37.037 0.00 0.00 0.00 2.57
635 638 6.346120 CGTCTCCTTTTACTGAATGCATATCG 60.346 42.308 0.00 0.00 0.00 2.92
636 639 6.480320 GTCTCCTTTTACTGAATGCATATCGT 59.520 38.462 0.00 0.00 0.00 3.73
637 640 6.701841 TCTCCTTTTACTGAATGCATATCGTC 59.298 38.462 0.00 0.00 0.00 4.20
638 641 6.345298 TCCTTTTACTGAATGCATATCGTCA 58.655 36.000 0.00 0.00 0.00 4.35
643 646 7.841915 TTACTGAATGCATATCGTCAAAAGA 57.158 32.000 0.00 0.00 0.00 2.52
647 650 6.345298 TGAATGCATATCGTCAAAAGACCTA 58.655 36.000 0.00 0.00 0.00 3.08
662 665 8.796475 TCAAAAGACCTAAAATGAATCCAGAAG 58.204 33.333 0.00 0.00 0.00 2.85
668 671 6.183360 ACCTAAAATGAATCCAGAAGAATGCG 60.183 38.462 0.00 0.00 0.00 4.73
678 681 2.938451 CAGAAGAATGCGAGCACCAATA 59.062 45.455 0.00 0.00 0.00 1.90
684 687 2.401583 TGCGAGCACCAATATCAAGT 57.598 45.000 0.00 0.00 0.00 3.16
685 688 2.009051 TGCGAGCACCAATATCAAGTG 58.991 47.619 0.00 0.00 34.58 3.16
710 713 9.683069 TGGTCGAAGTACTAAAGTAAGTAAAAG 57.317 33.333 0.00 0.00 33.85 2.27
784 792 5.932303 TGTATGGTCTAAAGAAACTCAGCAC 59.068 40.000 0.00 0.00 0.00 4.40
846 862 6.749118 GCACCACAAGATCTAAATTTAGCTTG 59.251 38.462 27.07 27.07 37.13 4.01
954 970 2.283809 CACCCCGATCCTCCTCCT 59.716 66.667 0.00 0.00 0.00 3.69
955 971 1.834822 CACCCCGATCCTCCTCCTC 60.835 68.421 0.00 0.00 0.00 3.71
956 972 2.203714 CCCCGATCCTCCTCCTCC 60.204 72.222 0.00 0.00 0.00 4.30
1101 1117 3.681835 AACTTCGCCTCCGTCGCT 61.682 61.111 0.00 0.00 35.54 4.93
1241 1257 0.317938 GATCCGTCGTCTTCCCATCG 60.318 60.000 0.00 0.00 0.00 3.84
1426 1464 3.102052 ACTTTGTTGGCTTGATGCTTG 57.898 42.857 0.00 0.00 42.39 4.01
1486 1524 7.847096 TCTAAGTGTGCCTCTACATAATTTGA 58.153 34.615 0.00 0.00 32.43 2.69
1510 1548 2.094597 CCATCAAGGCATTTCTTTCGCA 60.095 45.455 0.00 0.00 0.00 5.10
1514 1552 3.058016 TCAAGGCATTTCTTTCGCAGAAG 60.058 43.478 0.00 0.00 45.90 2.85
1519 1557 2.774439 TTTCTTTCGCAGAAGGCAAC 57.226 45.000 0.00 0.00 45.90 4.17
1781 1819 2.175035 TAGGGTGGTTACTGCCGTGC 62.175 60.000 0.00 0.00 0.00 5.34
1783 1821 3.419759 GTGGTTACTGCCGTGCGG 61.420 66.667 6.22 6.22 41.29 5.69
1812 1850 3.452755 TTCAGTGTCGTGTCATTGTCT 57.547 42.857 0.00 0.00 0.00 3.41
1813 1851 4.577834 TTCAGTGTCGTGTCATTGTCTA 57.422 40.909 0.00 0.00 0.00 2.59
1846 1887 7.979444 TTAGACACCTTTTTCCTTGACATAG 57.021 36.000 0.00 0.00 0.00 2.23
1851 1892 7.231467 ACACCTTTTTCCTTGACATAGTGTAT 58.769 34.615 0.00 0.00 33.29 2.29
1857 1898 3.709653 TCCTTGACATAGTGTATGGGGTC 59.290 47.826 0.00 0.00 40.47 4.46
1859 1900 3.414759 TGACATAGTGTATGGGGTCCT 57.585 47.619 0.00 0.00 40.47 3.85
1891 1932 5.146460 CCATTTATATTGGAATCGCACACG 58.854 41.667 0.00 0.00 36.26 4.49
1951 1992 3.801114 TCAGAATGACGTGTATCCCTG 57.199 47.619 0.00 0.00 42.56 4.45
2365 2414 5.451908 CGAATCATTACAATACATGGGTGC 58.548 41.667 0.00 0.00 0.00 5.01
2491 2555 4.397103 CACATGAAGTATTGTGACCTGCAT 59.603 41.667 0.00 0.00 34.50 3.96
2566 2630 4.091549 AGGGAGTGATGATGCAAAACATT 58.908 39.130 0.00 0.00 39.84 2.71
2748 2834 5.126222 CCGCTCACAGGTATCATATACTCAT 59.874 44.000 0.00 0.00 0.00 2.90
2751 2837 7.190191 GCTCACAGGTATCATATACTCATACG 58.810 42.308 0.00 0.00 0.00 3.06
3001 3099 0.669932 CTGGAGAGTGCACTGCTCAC 60.670 60.000 30.32 23.64 35.55 3.51
3099 3197 6.900743 CAGGAAAGGAAATAAGGGGGAAATTA 59.099 38.462 0.00 0.00 0.00 1.40
3207 3305 5.067805 TCGTGATGCTAGAATATGTCAGTGT 59.932 40.000 0.00 0.00 0.00 3.55
3351 3459 8.154203 TGTTGTGATTCAGATGAGGTACTTTTA 58.846 33.333 0.00 0.00 41.55 1.52
3366 3474 4.657075 ACTTTTACTGCAATTCCGTACG 57.343 40.909 8.69 8.69 0.00 3.67
3368 3476 1.361793 TTACTGCAATTCCGTACGGC 58.638 50.000 29.64 17.33 34.68 5.68
3377 3485 2.867287 TTCCGTACGGCGATTTGATA 57.133 45.000 29.64 5.89 44.77 2.15
3386 3494 4.196193 ACGGCGATTTGATATTCCTGAAA 58.804 39.130 16.62 0.00 0.00 2.69
3387 3495 4.821805 ACGGCGATTTGATATTCCTGAAAT 59.178 37.500 16.62 0.00 0.00 2.17
3466 3583 6.936900 GGGAGCTGCATTAGAATATCTTAACA 59.063 38.462 7.79 0.00 0.00 2.41
3584 3702 1.228769 TGTAGGGTCGCTGGAGTGT 60.229 57.895 0.00 0.00 0.00 3.55
3616 3734 6.780457 CATGGAGTATGGGATTTTCAAAGT 57.220 37.500 0.00 0.00 32.95 2.66
3651 3769 9.710900 AAGGCAAATTTATAGGTTTCTGAAAAG 57.289 29.630 4.09 0.00 0.00 2.27
3652 3770 8.314021 AGGCAAATTTATAGGTTTCTGAAAAGG 58.686 33.333 4.09 0.00 0.00 3.11
3653 3771 8.094548 GGCAAATTTATAGGTTTCTGAAAAGGT 58.905 33.333 4.09 0.00 0.00 3.50
3654 3772 9.489084 GCAAATTTATAGGTTTCTGAAAAGGTT 57.511 29.630 4.09 0.00 0.00 3.50
3706 3824 8.778358 GTTGAAATTTTAACCCACATTTGCATA 58.222 29.630 13.41 0.00 0.00 3.14
3714 3832 8.532186 TTAACCCACATTTGCATATAGATGTT 57.468 30.769 0.00 0.00 35.30 2.71
3865 3983 1.271102 GTAAATGTTTTCAGGCGCCCA 59.729 47.619 26.15 13.69 0.00 5.36
3866 3984 0.755686 AAATGTTTTCAGGCGCCCAA 59.244 45.000 26.15 14.30 0.00 4.12
3946 4066 0.704076 AGGGCAAAGCTATGGGTTGA 59.296 50.000 0.00 0.00 33.11 3.18
3949 4069 0.451783 GCAAAGCTATGGGTTGACCG 59.548 55.000 0.00 0.00 44.64 4.79
3953 4073 2.994699 CTATGGGTTGACCGGGCA 59.005 61.111 5.41 5.41 44.64 5.36
3966 4086 2.357952 GACCGGGCAGAAATAAATCCAC 59.642 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.321966 TGCCCGTTCGTCCATGCA 62.322 61.111 0.00 0.00 0.00 3.96
1 2 3.799755 GTGCCCGTTCGTCCATGC 61.800 66.667 0.00 0.00 0.00 4.06
2 3 2.047274 AGTGCCCGTTCGTCCATG 60.047 61.111 0.00 0.00 0.00 3.66
3 4 2.047274 CAGTGCCCGTTCGTCCAT 60.047 61.111 0.00 0.00 0.00 3.41
4 5 4.980805 GCAGTGCCCGTTCGTCCA 62.981 66.667 2.85 0.00 0.00 4.02
5 6 4.681978 AGCAGTGCCCGTTCGTCC 62.682 66.667 12.58 0.00 0.00 4.79
6 7 3.414700 CAGCAGTGCCCGTTCGTC 61.415 66.667 12.58 0.00 0.00 4.20
7 8 3.750373 AACAGCAGTGCCCGTTCGT 62.750 57.895 12.58 0.00 0.00 3.85
8 9 2.954753 GAACAGCAGTGCCCGTTCG 61.955 63.158 24.23 6.51 33.86 3.95
9 10 1.598130 AGAACAGCAGTGCCCGTTC 60.598 57.895 28.22 28.22 39.89 3.95
10 11 1.893808 CAGAACAGCAGTGCCCGTT 60.894 57.895 17.80 17.80 0.00 4.44
11 12 2.281070 CAGAACAGCAGTGCCCGT 60.281 61.111 12.58 6.74 0.00 5.28
12 13 3.730761 GCAGAACAGCAGTGCCCG 61.731 66.667 12.58 5.99 0.00 6.13
13 14 1.900498 AAGCAGAACAGCAGTGCCC 60.900 57.895 12.58 0.00 37.98 5.36
14 15 1.285023 CAAGCAGAACAGCAGTGCC 59.715 57.895 12.58 0.00 37.98 5.01
15 16 0.317603 CACAAGCAGAACAGCAGTGC 60.318 55.000 7.13 7.13 36.51 4.40
16 17 0.309922 CCACAAGCAGAACAGCAGTG 59.690 55.000 0.00 0.00 40.32 3.66
17 18 0.820891 CCCACAAGCAGAACAGCAGT 60.821 55.000 0.00 0.00 36.85 4.40
18 19 1.954528 CCCACAAGCAGAACAGCAG 59.045 57.895 0.00 0.00 36.85 4.24
19 20 2.195567 GCCCACAAGCAGAACAGCA 61.196 57.895 0.00 0.00 36.85 4.41
20 21 2.647297 GCCCACAAGCAGAACAGC 59.353 61.111 0.00 0.00 0.00 4.40
21 22 2.270986 GGGCCCACAAGCAGAACAG 61.271 63.158 19.95 0.00 0.00 3.16
22 23 2.203480 GGGCCCACAAGCAGAACA 60.203 61.111 19.95 0.00 0.00 3.18
23 24 1.607467 ATGGGCCCACAAGCAGAAC 60.607 57.895 31.51 0.00 0.00 3.01
24 25 1.607178 CATGGGCCCACAAGCAGAA 60.607 57.895 31.51 0.00 0.00 3.02
25 26 2.036098 CATGGGCCCACAAGCAGA 59.964 61.111 31.51 0.00 0.00 4.26
26 27 2.036098 TCATGGGCCCACAAGCAG 59.964 61.111 31.51 13.16 0.00 4.24
27 28 2.036098 CTCATGGGCCCACAAGCA 59.964 61.111 31.51 1.96 0.00 3.91
28 29 2.757099 CCTCATGGGCCCACAAGC 60.757 66.667 31.51 0.00 0.00 4.01
40 41 4.891727 CTTACGCCGCCGCCTCAT 62.892 66.667 0.00 0.00 38.22 2.90
47 48 4.097863 GTTGCCACTTACGCCGCC 62.098 66.667 0.00 0.00 0.00 6.13
48 49 4.097863 GGTTGCCACTTACGCCGC 62.098 66.667 0.00 0.00 0.00 6.53
49 50 3.784412 CGGTTGCCACTTACGCCG 61.784 66.667 0.00 0.00 0.00 6.46
50 51 3.428282 CCGGTTGCCACTTACGCC 61.428 66.667 0.00 0.00 0.00 5.68
51 52 3.428282 CCCGGTTGCCACTTACGC 61.428 66.667 0.00 0.00 0.00 4.42
52 53 1.740296 CTCCCGGTTGCCACTTACG 60.740 63.158 0.00 0.00 0.00 3.18
53 54 2.038837 GCTCCCGGTTGCCACTTAC 61.039 63.158 0.00 0.00 0.00 2.34
54 55 2.349755 GCTCCCGGTTGCCACTTA 59.650 61.111 0.00 0.00 0.00 2.24
59 60 4.778143 ATCACGCTCCCGGTTGCC 62.778 66.667 0.00 0.00 39.22 4.52
60 61 3.499737 CATCACGCTCCCGGTTGC 61.500 66.667 0.00 2.87 39.22 4.17
61 62 1.811266 CTCATCACGCTCCCGGTTG 60.811 63.158 0.00 0.00 39.22 3.77
62 63 1.982395 TCTCATCACGCTCCCGGTT 60.982 57.895 0.00 0.00 39.22 4.44
63 64 2.362503 TCTCATCACGCTCCCGGT 60.363 61.111 0.00 0.00 39.22 5.28
64 65 2.105128 GTCTCATCACGCTCCCGG 59.895 66.667 0.00 0.00 39.22 5.73
65 66 1.226802 CAGTCTCATCACGCTCCCG 60.227 63.158 0.00 0.00 41.14 5.14
66 67 1.142748 CCAGTCTCATCACGCTCCC 59.857 63.158 0.00 0.00 0.00 4.30
67 68 1.520342 GCCAGTCTCATCACGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
68 69 0.805322 CTGCCAGTCTCATCACGCTC 60.805 60.000 0.00 0.00 0.00 5.03
69 70 1.217511 CTGCCAGTCTCATCACGCT 59.782 57.895 0.00 0.00 0.00 5.07
70 71 2.459442 GCTGCCAGTCTCATCACGC 61.459 63.158 0.00 0.00 0.00 5.34
71 72 2.163390 CGCTGCCAGTCTCATCACG 61.163 63.158 0.00 0.00 0.00 4.35
72 73 2.459442 GCGCTGCCAGTCTCATCAC 61.459 63.158 0.00 0.00 0.00 3.06
73 74 2.125391 GCGCTGCCAGTCTCATCA 60.125 61.111 0.00 0.00 0.00 3.07
74 75 3.260483 CGCGCTGCCAGTCTCATC 61.260 66.667 5.56 0.00 0.00 2.92
85 86 3.599792 CTGGAAAGGTTGCGCGCTG 62.600 63.158 33.29 0.00 0.00 5.18
86 87 3.357079 CTGGAAAGGTTGCGCGCT 61.357 61.111 33.29 10.95 0.00 5.92
87 88 4.404654 CCTGGAAAGGTTGCGCGC 62.405 66.667 27.26 27.26 0.00 6.86
88 89 4.404654 GCCTGGAAAGGTTGCGCG 62.405 66.667 0.00 0.00 0.00 6.86
89 90 2.982744 GAGCCTGGAAAGGTTGCGC 61.983 63.158 0.00 0.00 0.00 6.09
90 91 1.301677 GAGAGCCTGGAAAGGTTGCG 61.302 60.000 0.00 0.00 0.00 4.85
91 92 0.250901 TGAGAGCCTGGAAAGGTTGC 60.251 55.000 0.00 0.00 0.00 4.17
92 93 1.072965 AGTGAGAGCCTGGAAAGGTTG 59.927 52.381 0.00 0.00 0.00 3.77
93 94 1.439543 AGTGAGAGCCTGGAAAGGTT 58.560 50.000 0.00 0.00 0.00 3.50
94 95 1.439543 AAGTGAGAGCCTGGAAAGGT 58.560 50.000 0.00 0.00 0.00 3.50
95 96 2.575805 AAAGTGAGAGCCTGGAAAGG 57.424 50.000 0.00 0.00 0.00 3.11
115 116 9.826574 GTGGTATTATGGTATTCACTACAGAAA 57.173 33.333 0.00 0.00 31.44 2.52
116 117 8.983789 TGTGGTATTATGGTATTCACTACAGAA 58.016 33.333 0.00 0.00 31.44 3.02
117 118 8.418662 GTGTGGTATTATGGTATTCACTACAGA 58.581 37.037 0.00 0.00 29.68 3.41
118 119 7.656137 GGTGTGGTATTATGGTATTCACTACAG 59.344 40.741 0.00 0.00 29.68 2.74
119 120 7.125963 TGGTGTGGTATTATGGTATTCACTACA 59.874 37.037 0.00 0.00 31.44 2.74
120 121 7.440255 GTGGTGTGGTATTATGGTATTCACTAC 59.560 40.741 0.00 0.00 0.00 2.73
121 122 7.125963 TGTGGTGTGGTATTATGGTATTCACTA 59.874 37.037 0.00 0.00 0.00 2.74
122 123 6.069905 TGTGGTGTGGTATTATGGTATTCACT 60.070 38.462 0.00 0.00 0.00 3.41
123 124 6.116806 TGTGGTGTGGTATTATGGTATTCAC 58.883 40.000 0.00 0.00 0.00 3.18
124 125 6.314899 TGTGGTGTGGTATTATGGTATTCA 57.685 37.500 0.00 0.00 0.00 2.57
125 126 7.255451 CCAATGTGGTGTGGTATTATGGTATTC 60.255 40.741 0.00 0.00 31.35 1.75
126 127 6.549364 CCAATGTGGTGTGGTATTATGGTATT 59.451 38.462 0.00 0.00 31.35 1.89
127 128 6.068010 CCAATGTGGTGTGGTATTATGGTAT 58.932 40.000 0.00 0.00 31.35 2.73
128 129 5.441500 CCAATGTGGTGTGGTATTATGGTA 58.558 41.667 0.00 0.00 31.35 3.25
129 130 4.277476 CCAATGTGGTGTGGTATTATGGT 58.723 43.478 0.00 0.00 31.35 3.55
130 131 3.068024 GCCAATGTGGTGTGGTATTATGG 59.932 47.826 0.00 0.00 40.46 2.74
131 132 3.698539 TGCCAATGTGGTGTGGTATTATG 59.301 43.478 0.00 0.00 40.46 1.90
132 133 3.953612 CTGCCAATGTGGTGTGGTATTAT 59.046 43.478 0.00 0.00 40.46 1.28
133 134 3.351740 CTGCCAATGTGGTGTGGTATTA 58.648 45.455 0.00 0.00 40.46 0.98
134 135 2.170166 CTGCCAATGTGGTGTGGTATT 58.830 47.619 0.00 0.00 40.46 1.89
135 136 1.616725 CCTGCCAATGTGGTGTGGTAT 60.617 52.381 0.00 0.00 40.46 2.73
136 137 0.251121 CCTGCCAATGTGGTGTGGTA 60.251 55.000 0.00 0.00 40.46 3.25
137 138 1.531365 CCTGCCAATGTGGTGTGGT 60.531 57.895 0.00 0.00 40.46 4.16
138 139 0.827089 TTCCTGCCAATGTGGTGTGG 60.827 55.000 0.00 0.00 40.46 4.17
139 140 1.039068 TTTCCTGCCAATGTGGTGTG 58.961 50.000 0.00 0.00 40.46 3.82
140 141 1.039856 GTTTCCTGCCAATGTGGTGT 58.960 50.000 0.00 0.00 40.46 4.16
141 142 0.318120 GGTTTCCTGCCAATGTGGTG 59.682 55.000 0.00 0.00 40.46 4.17
142 143 0.105760 TGGTTTCCTGCCAATGTGGT 60.106 50.000 0.00 0.00 40.46 4.16
143 144 1.205417 GATGGTTTCCTGCCAATGTGG 59.795 52.381 0.00 0.00 39.72 4.17
144 145 2.173519 AGATGGTTTCCTGCCAATGTG 58.826 47.619 0.00 0.00 39.72 3.21
145 146 2.610438 AGATGGTTTCCTGCCAATGT 57.390 45.000 0.00 0.00 39.72 2.71
146 147 5.170748 GTTTTAGATGGTTTCCTGCCAATG 58.829 41.667 0.00 0.00 39.72 2.82
147 148 4.837860 TGTTTTAGATGGTTTCCTGCCAAT 59.162 37.500 0.00 0.00 39.72 3.16
148 149 4.219115 TGTTTTAGATGGTTTCCTGCCAA 58.781 39.130 0.00 0.00 39.72 4.52
149 150 3.826157 CTGTTTTAGATGGTTTCCTGCCA 59.174 43.478 0.00 0.00 40.68 4.92
150 151 3.367395 GCTGTTTTAGATGGTTTCCTGCC 60.367 47.826 0.00 0.00 0.00 4.85
151 152 3.255642 TGCTGTTTTAGATGGTTTCCTGC 59.744 43.478 0.00 0.00 0.00 4.85
152 153 4.613622 CGTGCTGTTTTAGATGGTTTCCTG 60.614 45.833 0.00 0.00 0.00 3.86
153 154 3.502211 CGTGCTGTTTTAGATGGTTTCCT 59.498 43.478 0.00 0.00 0.00 3.36
154 155 3.500680 TCGTGCTGTTTTAGATGGTTTCC 59.499 43.478 0.00 0.00 0.00 3.13
155 156 4.378459 CCTCGTGCTGTTTTAGATGGTTTC 60.378 45.833 0.00 0.00 0.00 2.78
156 157 3.502211 CCTCGTGCTGTTTTAGATGGTTT 59.498 43.478 0.00 0.00 0.00 3.27
157 158 3.074412 CCTCGTGCTGTTTTAGATGGTT 58.926 45.455 0.00 0.00 0.00 3.67
158 159 2.615493 CCCTCGTGCTGTTTTAGATGGT 60.615 50.000 0.00 0.00 0.00 3.55
159 160 2.009774 CCCTCGTGCTGTTTTAGATGG 58.990 52.381 0.00 0.00 0.00 3.51
160 161 2.972625 TCCCTCGTGCTGTTTTAGATG 58.027 47.619 0.00 0.00 0.00 2.90
161 162 3.914426 ATCCCTCGTGCTGTTTTAGAT 57.086 42.857 0.00 0.00 0.00 1.98
162 163 3.695830 AATCCCTCGTGCTGTTTTAGA 57.304 42.857 0.00 0.00 0.00 2.10
163 164 5.411669 AGTTTAATCCCTCGTGCTGTTTTAG 59.588 40.000 0.00 0.00 0.00 1.85
164 165 5.310451 AGTTTAATCCCTCGTGCTGTTTTA 58.690 37.500 0.00 0.00 0.00 1.52
165 166 4.142038 AGTTTAATCCCTCGTGCTGTTTT 58.858 39.130 0.00 0.00 0.00 2.43
166 167 3.751518 AGTTTAATCCCTCGTGCTGTTT 58.248 40.909 0.00 0.00 0.00 2.83
167 168 3.418684 AGTTTAATCCCTCGTGCTGTT 57.581 42.857 0.00 0.00 0.00 3.16
168 169 3.418684 AAGTTTAATCCCTCGTGCTGT 57.581 42.857 0.00 0.00 0.00 4.40
169 170 4.511826 GGATAAGTTTAATCCCTCGTGCTG 59.488 45.833 0.00 0.00 0.00 4.41
170 171 4.704965 GGATAAGTTTAATCCCTCGTGCT 58.295 43.478 0.00 0.00 0.00 4.40
171 172 3.493503 CGGATAAGTTTAATCCCTCGTGC 59.506 47.826 0.00 0.00 0.00 5.34
172 173 4.056050 CCGGATAAGTTTAATCCCTCGTG 58.944 47.826 0.00 0.00 0.00 4.35
173 174 3.708121 ACCGGATAAGTTTAATCCCTCGT 59.292 43.478 9.46 0.00 0.00 4.18
174 175 4.332428 ACCGGATAAGTTTAATCCCTCG 57.668 45.455 9.46 0.00 0.00 4.63
175 176 8.510243 TTAAAACCGGATAAGTTTAATCCCTC 57.490 34.615 9.46 0.00 36.44 4.30
176 177 8.882557 TTTAAAACCGGATAAGTTTAATCCCT 57.117 30.769 9.46 0.00 36.44 4.20
177 178 9.577110 CTTTTAAAACCGGATAAGTTTAATCCC 57.423 33.333 9.46 0.00 36.44 3.85
183 184 9.006839 CCTCTACTTTTAAAACCGGATAAGTTT 57.993 33.333 9.46 2.76 39.07 2.66
184 185 7.609146 CCCTCTACTTTTAAAACCGGATAAGTT 59.391 37.037 9.46 0.00 0.00 2.66
185 186 7.038088 TCCCTCTACTTTTAAAACCGGATAAGT 60.038 37.037 9.46 5.57 0.00 2.24
186 187 7.279536 GTCCCTCTACTTTTAAAACCGGATAAG 59.720 40.741 9.46 0.00 0.00 1.73
187 188 7.105588 GTCCCTCTACTTTTAAAACCGGATAA 58.894 38.462 9.46 1.24 0.00 1.75
188 189 6.213195 TGTCCCTCTACTTTTAAAACCGGATA 59.787 38.462 9.46 0.00 0.00 2.59
189 190 5.013391 TGTCCCTCTACTTTTAAAACCGGAT 59.987 40.000 9.46 0.00 0.00 4.18
190 191 4.347583 TGTCCCTCTACTTTTAAAACCGGA 59.652 41.667 9.46 0.00 0.00 5.14
191 192 4.644498 TGTCCCTCTACTTTTAAAACCGG 58.356 43.478 0.00 0.00 0.00 5.28
192 193 5.333568 CGTTGTCCCTCTACTTTTAAAACCG 60.334 44.000 0.00 0.00 0.00 4.44
193 194 5.528690 ACGTTGTCCCTCTACTTTTAAAACC 59.471 40.000 0.00 0.00 0.00 3.27
194 195 6.609237 ACGTTGTCCCTCTACTTTTAAAAC 57.391 37.500 0.00 0.00 0.00 2.43
195 196 7.628769 AAACGTTGTCCCTCTACTTTTAAAA 57.371 32.000 0.00 0.00 0.00 1.52
196 197 7.474190 CAAAACGTTGTCCCTCTACTTTTAAA 58.526 34.615 0.00 0.00 0.00 1.52
197 198 6.458615 GCAAAACGTTGTCCCTCTACTTTTAA 60.459 38.462 0.00 0.00 37.06 1.52
198 199 5.007921 GCAAAACGTTGTCCCTCTACTTTTA 59.992 40.000 0.00 0.00 37.06 1.52
199 200 4.201980 GCAAAACGTTGTCCCTCTACTTTT 60.202 41.667 0.00 0.00 37.06 2.27
200 201 3.314357 GCAAAACGTTGTCCCTCTACTTT 59.686 43.478 0.00 0.00 37.06 2.66
201 202 2.876550 GCAAAACGTTGTCCCTCTACTT 59.123 45.455 0.00 0.00 37.06 2.24
202 203 2.104281 AGCAAAACGTTGTCCCTCTACT 59.896 45.455 0.00 0.00 37.06 2.57
203 204 2.223377 CAGCAAAACGTTGTCCCTCTAC 59.777 50.000 0.00 0.00 37.06 2.59
204 205 2.489971 CAGCAAAACGTTGTCCCTCTA 58.510 47.619 0.00 0.00 37.06 2.43
205 206 1.308998 CAGCAAAACGTTGTCCCTCT 58.691 50.000 0.00 0.00 37.06 3.69
206 207 0.310854 CCAGCAAAACGTTGTCCCTC 59.689 55.000 0.00 0.00 37.06 4.30
207 208 0.395173 ACCAGCAAAACGTTGTCCCT 60.395 50.000 0.00 0.00 37.06 4.20
208 209 0.458260 AACCAGCAAAACGTTGTCCC 59.542 50.000 0.00 0.00 37.06 4.46
209 210 2.287393 AAACCAGCAAAACGTTGTCC 57.713 45.000 0.00 0.00 37.06 4.02
210 211 4.664188 TCTAAAACCAGCAAAACGTTGTC 58.336 39.130 0.00 0.00 37.06 3.18
211 212 4.157105 ACTCTAAAACCAGCAAAACGTTGT 59.843 37.500 0.00 0.00 37.06 3.32
212 213 4.668289 ACTCTAAAACCAGCAAAACGTTG 58.332 39.130 0.00 0.00 37.83 4.10
213 214 4.976224 ACTCTAAAACCAGCAAAACGTT 57.024 36.364 0.00 0.00 0.00 3.99
214 215 4.976224 AACTCTAAAACCAGCAAAACGT 57.024 36.364 0.00 0.00 0.00 3.99
215 216 5.912955 CCTTAACTCTAAAACCAGCAAAACG 59.087 40.000 0.00 0.00 0.00 3.60
216 217 6.040054 TCCCTTAACTCTAAAACCAGCAAAAC 59.960 38.462 0.00 0.00 0.00 2.43
217 218 6.040054 GTCCCTTAACTCTAAAACCAGCAAAA 59.960 38.462 0.00 0.00 0.00 2.44
218 219 5.533528 GTCCCTTAACTCTAAAACCAGCAAA 59.466 40.000 0.00 0.00 0.00 3.68
219 220 5.067954 GTCCCTTAACTCTAAAACCAGCAA 58.932 41.667 0.00 0.00 0.00 3.91
220 221 4.506095 GGTCCCTTAACTCTAAAACCAGCA 60.506 45.833 0.00 0.00 0.00 4.41
221 222 4.008330 GGTCCCTTAACTCTAAAACCAGC 58.992 47.826 0.00 0.00 0.00 4.85
222 223 5.237236 TGGTCCCTTAACTCTAAAACCAG 57.763 43.478 0.00 0.00 32.12 4.00
223 224 5.853572 ATGGTCCCTTAACTCTAAAACCA 57.146 39.130 0.00 0.00 39.66 3.67
224 225 6.946583 AGAAATGGTCCCTTAACTCTAAAACC 59.053 38.462 0.00 0.00 0.00 3.27
225 226 7.883833 AGAGAAATGGTCCCTTAACTCTAAAAC 59.116 37.037 11.79 0.00 32.80 2.43
226 227 7.985589 AGAGAAATGGTCCCTTAACTCTAAAA 58.014 34.615 11.79 0.00 32.80 1.52
227 228 7.569599 AGAGAAATGGTCCCTTAACTCTAAA 57.430 36.000 11.79 0.00 32.80 1.85
228 229 7.899709 AGTAGAGAAATGGTCCCTTAACTCTAA 59.100 37.037 17.08 6.94 37.44 2.10
229 230 7.420029 AGTAGAGAAATGGTCCCTTAACTCTA 58.580 38.462 14.06 14.06 35.55 2.43
230 231 6.265304 AGTAGAGAAATGGTCCCTTAACTCT 58.735 40.000 15.36 15.36 37.30 3.24
231 232 6.547930 AGTAGAGAAATGGTCCCTTAACTC 57.452 41.667 0.00 0.00 0.00 3.01
232 233 6.954352 AAGTAGAGAAATGGTCCCTTAACT 57.046 37.500 0.00 0.00 0.00 2.24
233 234 7.166167 TGAAAGTAGAGAAATGGTCCCTTAAC 58.834 38.462 0.00 0.00 0.00 2.01
234 235 7.324388 TGAAAGTAGAGAAATGGTCCCTTAA 57.676 36.000 0.00 0.00 0.00 1.85
235 236 6.945636 TGAAAGTAGAGAAATGGTCCCTTA 57.054 37.500 0.00 0.00 0.00 2.69
236 237 5.843019 TGAAAGTAGAGAAATGGTCCCTT 57.157 39.130 0.00 0.00 0.00 3.95
237 238 5.843019 TTGAAAGTAGAGAAATGGTCCCT 57.157 39.130 0.00 0.00 0.00 4.20
238 239 6.715264 TCTTTTGAAAGTAGAGAAATGGTCCC 59.285 38.462 3.63 0.00 37.31 4.46
239 240 7.445707 ACTCTTTTGAAAGTAGAGAAATGGTCC 59.554 37.037 12.26 0.00 38.95 4.46
240 241 8.384607 ACTCTTTTGAAAGTAGAGAAATGGTC 57.615 34.615 12.26 0.00 38.95 4.02
241 242 8.753497 AACTCTTTTGAAAGTAGAGAAATGGT 57.247 30.769 12.26 0.00 38.95 3.55
245 246 9.338622 CCCTTAACTCTTTTGAAAGTAGAGAAA 57.661 33.333 12.26 6.41 38.95 2.52
246 247 8.711170 TCCCTTAACTCTTTTGAAAGTAGAGAA 58.289 33.333 12.26 0.00 38.95 2.87
247 248 8.148999 GTCCCTTAACTCTTTTGAAAGTAGAGA 58.851 37.037 12.26 0.00 38.95 3.10
248 249 7.931948 TGTCCCTTAACTCTTTTGAAAGTAGAG 59.068 37.037 5.35 5.35 40.91 2.43
249 250 7.798071 TGTCCCTTAACTCTTTTGAAAGTAGA 58.202 34.615 3.63 0.00 37.31 2.59
250 251 7.931948 TCTGTCCCTTAACTCTTTTGAAAGTAG 59.068 37.037 3.63 3.36 37.31 2.57
251 252 7.798071 TCTGTCCCTTAACTCTTTTGAAAGTA 58.202 34.615 3.63 0.00 37.31 2.24
252 253 6.659824 TCTGTCCCTTAACTCTTTTGAAAGT 58.340 36.000 3.63 0.00 37.31 2.66
253 254 7.568199 TTCTGTCCCTTAACTCTTTTGAAAG 57.432 36.000 0.00 0.00 37.36 2.62
254 255 7.948034 TTTCTGTCCCTTAACTCTTTTGAAA 57.052 32.000 0.00 0.00 0.00 2.69
255 256 7.948034 TTTTCTGTCCCTTAACTCTTTTGAA 57.052 32.000 0.00 0.00 0.00 2.69
256 257 9.807921 ATATTTTCTGTCCCTTAACTCTTTTGA 57.192 29.630 0.00 0.00 0.00 2.69
265 266 9.470399 GGGAAAAGTATATTTTCTGTCCCTTAA 57.530 33.333 16.34 0.00 38.21 1.85
266 267 8.842764 AGGGAAAAGTATATTTTCTGTCCCTTA 58.157 33.333 18.90 0.00 42.00 2.69
267 268 7.709601 AGGGAAAAGTATATTTTCTGTCCCTT 58.290 34.615 18.90 8.96 42.00 3.95
268 269 7.285340 AGGGAAAAGTATATTTTCTGTCCCT 57.715 36.000 18.90 18.90 40.93 4.20
269 270 7.834681 AGAAGGGAAAAGTATATTTTCTGTCCC 59.165 37.037 16.05 16.05 38.28 4.46
270 271 8.809468 AGAAGGGAAAAGTATATTTTCTGTCC 57.191 34.615 11.59 9.37 38.21 4.02
279 280 9.392259 CGGAGTAAAAAGAAGGGAAAAGTATAT 57.608 33.333 0.00 0.00 0.00 0.86
280 281 7.335171 GCGGAGTAAAAAGAAGGGAAAAGTATA 59.665 37.037 0.00 0.00 0.00 1.47
281 282 6.150641 GCGGAGTAAAAAGAAGGGAAAAGTAT 59.849 38.462 0.00 0.00 0.00 2.12
282 283 5.471116 GCGGAGTAAAAAGAAGGGAAAAGTA 59.529 40.000 0.00 0.00 0.00 2.24
283 284 4.277672 GCGGAGTAAAAAGAAGGGAAAAGT 59.722 41.667 0.00 0.00 0.00 2.66
284 285 4.277423 TGCGGAGTAAAAAGAAGGGAAAAG 59.723 41.667 0.00 0.00 0.00 2.27
285 286 4.208746 TGCGGAGTAAAAAGAAGGGAAAA 58.791 39.130 0.00 0.00 0.00 2.29
286 287 3.822940 TGCGGAGTAAAAAGAAGGGAAA 58.177 40.909 0.00 0.00 0.00 3.13
287 288 3.495434 TGCGGAGTAAAAAGAAGGGAA 57.505 42.857 0.00 0.00 0.00 3.97
288 289 3.713826 ATGCGGAGTAAAAAGAAGGGA 57.286 42.857 0.00 0.00 0.00 4.20
289 290 6.990349 TCTTATATGCGGAGTAAAAAGAAGGG 59.010 38.462 0.00 0.00 0.00 3.95
290 291 8.608844 ATCTTATATGCGGAGTAAAAAGAAGG 57.391 34.615 0.00 0.00 0.00 3.46
293 294 9.607988 TCAAATCTTATATGCGGAGTAAAAAGA 57.392 29.630 0.00 0.00 0.00 2.52
296 297 9.554395 TGATCAAATCTTATATGCGGAGTAAAA 57.446 29.630 0.00 0.00 0.00 1.52
297 298 9.554395 TTGATCAAATCTTATATGCGGAGTAAA 57.446 29.630 5.45 0.00 0.00 2.01
298 299 9.554395 TTTGATCAAATCTTATATGCGGAGTAA 57.446 29.630 16.91 0.00 0.00 2.24
299 300 9.208022 CTTTGATCAAATCTTATATGCGGAGTA 57.792 33.333 20.76 0.00 0.00 2.59
300 301 7.716998 ACTTTGATCAAATCTTATATGCGGAGT 59.283 33.333 20.76 7.49 0.00 3.85
301 302 8.092521 ACTTTGATCAAATCTTATATGCGGAG 57.907 34.615 20.76 6.87 0.00 4.63
302 303 7.714813 TGACTTTGATCAAATCTTATATGCGGA 59.285 33.333 20.76 0.00 0.00 5.54
303 304 7.864686 TGACTTTGATCAAATCTTATATGCGG 58.135 34.615 20.76 7.58 0.00 5.69
304 305 9.720667 TTTGACTTTGATCAAATCTTATATGCG 57.279 29.630 20.76 8.05 42.32 4.73
315 316 5.321959 TGTGCAGTTTGACTTTGATCAAA 57.678 34.783 19.45 19.45 44.40 2.69
316 317 4.979943 TGTGCAGTTTGACTTTGATCAA 57.020 36.364 3.38 3.38 36.80 2.57
317 318 4.979943 TTGTGCAGTTTGACTTTGATCA 57.020 36.364 0.00 0.00 0.00 2.92
318 319 5.343249 ACTTTGTGCAGTTTGACTTTGATC 58.657 37.500 0.00 0.00 0.00 2.92
319 320 5.329035 ACTTTGTGCAGTTTGACTTTGAT 57.671 34.783 0.00 0.00 0.00 2.57
320 321 4.782019 ACTTTGTGCAGTTTGACTTTGA 57.218 36.364 0.00 0.00 0.00 2.69
321 322 5.844301 AAACTTTGTGCAGTTTGACTTTG 57.156 34.783 1.37 0.00 43.88 2.77
328 329 7.614124 AATTTGATCAAACTTTGTGCAGTTT 57.386 28.000 22.71 6.26 46.00 2.66
329 330 7.614124 AAATTTGATCAAACTTTGTGCAGTT 57.386 28.000 22.71 6.76 38.74 3.16
330 331 8.891671 ATAAATTTGATCAAACTTTGTGCAGT 57.108 26.923 22.71 0.44 32.51 4.40
393 394 8.289618 GCACCACGAAATGTATGTTCATATTAT 58.710 33.333 0.00 0.00 0.00 1.28
394 395 7.281100 TGCACCACGAAATGTATGTTCATATTA 59.719 33.333 0.00 0.00 0.00 0.98
395 396 6.094742 TGCACCACGAAATGTATGTTCATATT 59.905 34.615 0.00 0.00 0.00 1.28
396 397 5.588246 TGCACCACGAAATGTATGTTCATAT 59.412 36.000 0.00 0.00 0.00 1.78
397 398 4.938226 TGCACCACGAAATGTATGTTCATA 59.062 37.500 0.00 0.00 0.00 2.15
398 399 3.755905 TGCACCACGAAATGTATGTTCAT 59.244 39.130 0.00 0.00 0.00 2.57
399 400 3.142174 TGCACCACGAAATGTATGTTCA 58.858 40.909 0.00 0.00 0.00 3.18
400 401 3.822594 TGCACCACGAAATGTATGTTC 57.177 42.857 0.00 0.00 0.00 3.18
401 402 4.009675 AGATGCACCACGAAATGTATGTT 58.990 39.130 0.00 0.00 0.00 2.71
402 403 3.374988 CAGATGCACCACGAAATGTATGT 59.625 43.478 0.00 0.00 0.00 2.29
403 404 3.622612 TCAGATGCACCACGAAATGTATG 59.377 43.478 0.00 0.00 0.00 2.39
404 405 3.872696 TCAGATGCACCACGAAATGTAT 58.127 40.909 0.00 0.00 0.00 2.29
405 406 3.326836 TCAGATGCACCACGAAATGTA 57.673 42.857 0.00 0.00 0.00 2.29
406 407 2.183478 TCAGATGCACCACGAAATGT 57.817 45.000 0.00 0.00 0.00 2.71
407 408 4.880886 TTATCAGATGCACCACGAAATG 57.119 40.909 0.00 0.00 0.00 2.32
408 409 7.445096 TCAATATTATCAGATGCACCACGAAAT 59.555 33.333 0.00 0.00 0.00 2.17
409 410 6.765512 TCAATATTATCAGATGCACCACGAAA 59.234 34.615 0.00 0.00 0.00 3.46
410 411 6.287525 TCAATATTATCAGATGCACCACGAA 58.712 36.000 0.00 0.00 0.00 3.85
411 412 5.852827 TCAATATTATCAGATGCACCACGA 58.147 37.500 0.00 0.00 0.00 4.35
412 413 6.732531 ATCAATATTATCAGATGCACCACG 57.267 37.500 0.00 0.00 0.00 4.94
413 414 8.570488 TGAAATCAATATTATCAGATGCACCAC 58.430 33.333 0.00 0.00 0.00 4.16
414 415 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
489 490 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
490 491 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
491 492 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
492 493 5.828299 TGTAAGGTTTGGTCAAAGTCAAG 57.172 39.130 0.00 0.00 0.00 3.02
493 494 5.451242 GCATGTAAGGTTTGGTCAAAGTCAA 60.451 40.000 0.00 0.00 0.00 3.18
494 495 4.037446 GCATGTAAGGTTTGGTCAAAGTCA 59.963 41.667 0.00 0.00 0.00 3.41
495 496 4.546570 GCATGTAAGGTTTGGTCAAAGTC 58.453 43.478 0.00 0.00 0.00 3.01
496 497 3.004315 CGCATGTAAGGTTTGGTCAAAGT 59.996 43.478 0.00 0.00 0.00 2.66
497 498 3.564511 CGCATGTAAGGTTTGGTCAAAG 58.435 45.455 0.00 0.00 0.00 2.77
498 499 2.294791 CCGCATGTAAGGTTTGGTCAAA 59.705 45.455 0.00 0.00 0.00 2.69
499 500 1.883275 CCGCATGTAAGGTTTGGTCAA 59.117 47.619 0.00 0.00 0.00 3.18
500 501 1.072489 TCCGCATGTAAGGTTTGGTCA 59.928 47.619 0.00 0.00 0.00 4.02
501 502 1.467342 GTCCGCATGTAAGGTTTGGTC 59.533 52.381 0.00 0.00 0.00 4.02
502 503 1.073284 AGTCCGCATGTAAGGTTTGGT 59.927 47.619 0.00 0.00 0.00 3.67
503 504 1.821216 AGTCCGCATGTAAGGTTTGG 58.179 50.000 0.00 0.00 0.00 3.28
504 505 5.365403 TTTTAGTCCGCATGTAAGGTTTG 57.635 39.130 0.00 0.00 0.00 2.93
505 506 5.766174 TCTTTTTAGTCCGCATGTAAGGTTT 59.234 36.000 0.00 0.00 0.00 3.27
506 507 5.310451 TCTTTTTAGTCCGCATGTAAGGTT 58.690 37.500 0.00 0.00 0.00 3.50
507 508 4.901868 TCTTTTTAGTCCGCATGTAAGGT 58.098 39.130 0.00 0.00 0.00 3.50
508 509 5.873179 TTCTTTTTAGTCCGCATGTAAGG 57.127 39.130 0.00 0.00 0.00 2.69
509 510 5.788531 CGTTTCTTTTTAGTCCGCATGTAAG 59.211 40.000 0.00 0.00 0.00 2.34
510 511 5.334260 CCGTTTCTTTTTAGTCCGCATGTAA 60.334 40.000 0.00 0.00 0.00 2.41
511 512 4.152759 CCGTTTCTTTTTAGTCCGCATGTA 59.847 41.667 0.00 0.00 0.00 2.29
512 513 3.058501 CCGTTTCTTTTTAGTCCGCATGT 60.059 43.478 0.00 0.00 0.00 3.21
513 514 3.187637 TCCGTTTCTTTTTAGTCCGCATG 59.812 43.478 0.00 0.00 0.00 4.06
514 515 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
515 516 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
516 517 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
517 518 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
518 519 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
519 520 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
520 521 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
521 522 6.641474 AGATACTCCCTCCGTTTCTTTTTAG 58.359 40.000 0.00 0.00 0.00 1.85
522 523 6.351626 GGAGATACTCCCTCCGTTTCTTTTTA 60.352 42.308 6.54 0.00 44.36 1.52
523 524 5.489249 GAGATACTCCCTCCGTTTCTTTTT 58.511 41.667 0.00 0.00 0.00 1.94
524 525 4.081031 GGAGATACTCCCTCCGTTTCTTTT 60.081 45.833 6.54 0.00 44.36 2.27
525 526 3.451540 GGAGATACTCCCTCCGTTTCTTT 59.548 47.826 6.54 0.00 44.36 2.52
526 527 3.032459 GGAGATACTCCCTCCGTTTCTT 58.968 50.000 6.54 0.00 44.36 2.52
527 528 2.668625 GGAGATACTCCCTCCGTTTCT 58.331 52.381 6.54 0.00 44.36 2.52
537 538 1.243902 CCAGCTCTCGGAGATACTCC 58.756 60.000 8.39 7.65 46.44 3.85
553 554 2.752354 TCAAAATAATGTGTCGGCCCAG 59.248 45.455 0.00 0.00 0.00 4.45
556 557 5.866633 TCAATTTCAAAATAATGTGTCGGCC 59.133 36.000 0.00 0.00 0.00 6.13
560 561 9.180678 ACTTCGTCAATTTCAAAATAATGTGTC 57.819 29.630 0.00 0.00 0.00 3.67
561 562 9.180678 GACTTCGTCAATTTCAAAATAATGTGT 57.819 29.630 0.00 0.00 32.09 3.72
570 571 3.262135 GGCGACTTCGTCAATTTCAAA 57.738 42.857 0.00 0.00 44.43 2.69
581 582 1.719780 GACTACAAAGTGGCGACTTCG 59.280 52.381 14.89 6.26 41.87 3.79
582 583 1.719780 CGACTACAAAGTGGCGACTTC 59.280 52.381 14.89 0.27 41.87 3.01
588 589 4.464112 GTTTTCATCGACTACAAAGTGGC 58.536 43.478 0.00 0.00 35.56 5.01
593 594 4.682860 GGAGACGTTTTCATCGACTACAAA 59.317 41.667 0.00 0.00 34.99 2.83
594 595 4.022589 AGGAGACGTTTTCATCGACTACAA 60.023 41.667 0.00 0.00 36.66 2.41
595 596 3.504906 AGGAGACGTTTTCATCGACTACA 59.495 43.478 0.00 0.00 36.66 2.74
596 597 4.094090 AGGAGACGTTTTCATCGACTAC 57.906 45.455 0.00 0.00 35.07 2.73
597 598 4.778534 AAGGAGACGTTTTCATCGACTA 57.221 40.909 0.00 0.00 34.20 2.59
598 599 3.662247 AAGGAGACGTTTTCATCGACT 57.338 42.857 0.00 0.00 36.27 4.18
599 600 4.727235 AAAAGGAGACGTTTTCATCGAC 57.273 40.909 0.00 0.00 38.99 4.20
601 602 5.404366 TCAGTAAAAGGAGACGTTTTCATCG 59.596 40.000 0.00 0.00 42.18 3.84
602 603 6.780706 TCAGTAAAAGGAGACGTTTTCATC 57.219 37.500 0.00 0.00 42.18 2.92
605 608 5.851703 GCATTCAGTAAAAGGAGACGTTTTC 59.148 40.000 0.00 0.00 42.18 2.29
615 618 6.603237 TGACGATATGCATTCAGTAAAAGG 57.397 37.500 3.54 0.00 0.00 3.11
619 622 7.684670 GTCTTTTGACGATATGCATTCAGTAA 58.315 34.615 3.54 0.65 39.89 2.24
620 623 7.234187 GTCTTTTGACGATATGCATTCAGTA 57.766 36.000 3.54 0.00 39.89 2.74
636 639 8.704849 TTCTGGATTCATTTTAGGTCTTTTGA 57.295 30.769 0.00 0.00 0.00 2.69
637 640 8.796475 TCTTCTGGATTCATTTTAGGTCTTTTG 58.204 33.333 0.00 0.00 0.00 2.44
638 641 8.940397 TCTTCTGGATTCATTTTAGGTCTTTT 57.060 30.769 0.00 0.00 0.00 2.27
643 646 6.183360 CGCATTCTTCTGGATTCATTTTAGGT 60.183 38.462 0.00 0.00 0.00 3.08
647 650 5.678107 GCTCGCATTCTTCTGGATTCATTTT 60.678 40.000 0.00 0.00 0.00 1.82
662 665 3.313526 ACTTGATATTGGTGCTCGCATTC 59.686 43.478 0.00 0.00 0.00 2.67
668 671 2.609459 CGACCACTTGATATTGGTGCTC 59.391 50.000 1.42 0.00 46.56 4.26
678 681 6.342338 ACTTTAGTACTTCGACCACTTGAT 57.658 37.500 0.00 0.00 0.00 2.57
684 687 9.683069 CTTTTACTTACTTTAGTACTTCGACCA 57.317 33.333 0.00 0.00 30.62 4.02
685 688 9.899226 TCTTTTACTTACTTTAGTACTTCGACC 57.101 33.333 0.00 0.00 30.62 4.79
710 713 8.694394 GCACATCATTTTCACTTTCTTAACTTC 58.306 33.333 0.00 0.00 0.00 3.01
846 862 2.126189 GTGGTCGTCCCGCTACAC 60.126 66.667 0.00 0.00 40.81 2.90
853 869 4.313819 GGGAATTGTGGTCGTCCC 57.686 61.111 0.00 0.00 42.98 4.46
1104 1120 1.078567 GAGCTTCTGGAGGCACTGG 60.079 63.158 7.40 0.00 41.55 4.00
1218 1234 1.227002 GGAAGACGACGGATCAGGC 60.227 63.158 0.00 0.00 0.00 4.85
1241 1257 2.534939 GCACGCACGAATCATACAACTC 60.535 50.000 0.00 0.00 0.00 3.01
1426 1464 1.807142 GACAAAGCCAGTTCACCTAGC 59.193 52.381 0.00 0.00 0.00 3.42
1486 1524 4.559153 CGAAAGAAATGCCTTGATGGTTT 58.441 39.130 0.00 0.00 38.35 3.27
1519 1557 4.225497 GGAGGTCTCCGGCATTTG 57.775 61.111 0.00 0.00 40.36 2.32
1641 1679 7.933215 TTTCCATCATCATGCTATCCATAAG 57.067 36.000 0.00 0.00 31.47 1.73
1755 1793 2.481449 GCAGTAACCACCCTACTCATCG 60.481 54.545 0.00 0.00 0.00 3.84
1794 1832 5.861787 TGTTATAGACAATGACACGACACTG 59.138 40.000 0.00 0.00 34.69 3.66
1795 1833 6.020971 TGTTATAGACAATGACACGACACT 57.979 37.500 0.00 0.00 34.69 3.55
1796 1834 6.699895 TTGTTATAGACAATGACACGACAC 57.300 37.500 0.00 0.00 43.13 3.67
1830 1868 6.095440 CCCCATACACTATGTCAAGGAAAAAG 59.905 42.308 0.00 0.00 34.36 2.27
1846 1887 3.610911 CTTCAAAGAGGACCCCATACAC 58.389 50.000 0.00 0.00 0.00 2.90
1851 1892 1.065410 TGGCTTCAAAGAGGACCCCA 61.065 55.000 0.00 0.00 0.00 4.96
1857 1898 7.587037 TCCAATATAAATGGCTTCAAAGAGG 57.413 36.000 3.58 0.00 37.88 3.69
1859 1900 8.352201 CGATTCCAATATAAATGGCTTCAAAGA 58.648 33.333 3.58 0.00 37.88 2.52
1916 1957 6.467047 CGTCATTCTGAAAAACTGATGTATGC 59.533 38.462 0.00 0.00 0.00 3.14
2067 2114 3.577848 ACTGACTGAATCTGCTTGACTCT 59.422 43.478 0.00 0.00 0.00 3.24
2365 2414 7.011202 CCATGCATGCTCATATAAAGTAGCTAG 59.989 40.741 21.69 0.00 35.95 3.42
2491 2555 3.795688 AGCTTGTCAATTTCCTCAGGA 57.204 42.857 0.00 0.00 0.00 3.86
2566 2630 5.769662 AGTAGAATTGACATGCACCTTTTCA 59.230 36.000 0.00 0.00 0.00 2.69
2748 2834 1.306148 AGATCGAATCGAGGTGCGTA 58.694 50.000 12.00 0.00 39.91 4.42
2751 2837 3.190874 AGAAAAGATCGAATCGAGGTGC 58.809 45.455 12.00 0.68 39.91 5.01
3001 3099 3.223674 AGTTAAAACAGTGGGGTGAGG 57.776 47.619 0.00 0.00 0.00 3.86
3198 3296 7.224753 CAGCGGAAACTATAATAACACTGACAT 59.775 37.037 0.00 0.00 0.00 3.06
3351 3459 2.098233 CGCCGTACGGAATTGCAGT 61.098 57.895 37.62 0.00 38.44 4.40
3366 3474 6.749118 GCATATTTCAGGAATATCAAATCGCC 59.251 38.462 0.00 0.00 38.57 5.54
3368 3476 9.552114 GAAGCATATTTCAGGAATATCAAATCG 57.448 33.333 0.00 0.00 38.57 3.34
3377 3485 6.660521 TGAACACAGAAGCATATTTCAGGAAT 59.339 34.615 0.00 0.00 0.00 3.01
3386 3494 3.881688 GAGCCATGAACACAGAAGCATAT 59.118 43.478 0.00 0.00 0.00 1.78
3387 3495 3.054875 AGAGCCATGAACACAGAAGCATA 60.055 43.478 0.00 0.00 0.00 3.14
3466 3583 4.409247 GGACCAAGGAAGTGTATGGATAGT 59.591 45.833 0.00 0.00 36.75 2.12
3571 3689 2.357517 CACCACACTCCAGCGACC 60.358 66.667 0.00 0.00 0.00 4.79
3672 3790 9.508642 TGTGGGTTAAAATTTCAACTTCTTTTT 57.491 25.926 4.23 0.00 0.00 1.94
3673 3791 9.679661 ATGTGGGTTAAAATTTCAACTTCTTTT 57.320 25.926 4.23 0.00 0.00 2.27
3674 3792 9.679661 AATGTGGGTTAAAATTTCAACTTCTTT 57.320 25.926 4.23 0.00 0.00 2.52
3675 3793 9.679661 AAATGTGGGTTAAAATTTCAACTTCTT 57.320 25.926 4.23 0.00 0.00 2.52
3676 3794 9.108284 CAAATGTGGGTTAAAATTTCAACTTCT 57.892 29.630 4.23 0.00 0.00 2.85
3677 3795 7.855409 GCAAATGTGGGTTAAAATTTCAACTTC 59.145 33.333 4.23 0.00 0.00 3.01
3808 3926 5.733620 ATTTGTAGGTAAGACCAGAACGA 57.266 39.130 0.00 0.00 41.95 3.85
3946 4066 2.291282 TGTGGATTTATTTCTGCCCGGT 60.291 45.455 0.00 0.00 0.00 5.28
3949 4069 3.632145 ACGATGTGGATTTATTTCTGCCC 59.368 43.478 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.