Multiple sequence alignment - TraesCS4A01G021700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G021700 chr4A 100.000 5338 0 0 1 5338 15646447 15651784 0.000000e+00 9858.0
1 TraesCS4A01G021700 chr4A 98.913 92 1 0 1745 1836 473777262 473777171 1.190000e-36 165.0
2 TraesCS4A01G021700 chr4A 91.489 47 3 1 1476 1522 471931244 471931289 4.460000e-06 63.9
3 TraesCS4A01G021700 chr4A 85.965 57 3 5 4156 4211 15650533 15650585 7.470000e-04 56.5
4 TraesCS4A01G021700 chr4A 85.965 57 3 5 4087 4139 15650602 15650657 7.470000e-04 56.5
5 TraesCS4A01G021700 chr4D 92.910 1636 41 14 2831 4403 451287962 451286339 0.000000e+00 2309.0
6 TraesCS4A01G021700 chr4D 94.619 762 30 4 707 1467 451289992 451289241 0.000000e+00 1170.0
7 TraesCS4A01G021700 chr4D 89.498 876 67 14 4436 5305 451283486 451282630 0.000000e+00 1085.0
8 TraesCS4A01G021700 chr4D 89.307 664 51 10 2161 2807 451288619 451287959 0.000000e+00 815.0
9 TraesCS4A01G021700 chr4D 86.929 482 50 11 217 692 451290450 451289976 3.660000e-146 529.0
10 TraesCS4A01G021700 chr4D 95.098 102 5 0 1830 1931 451289034 451288933 1.540000e-35 161.0
11 TraesCS4A01G021700 chr4D 92.105 38 2 1 1896 1932 1225711 1225674 1.000000e-02 52.8
12 TraesCS4A01G021700 chr4B 94.044 1125 38 14 3217 4337 564871987 564870888 0.000000e+00 1679.0
13 TraesCS4A01G021700 chr4B 88.327 771 43 23 713 1457 564874855 564874106 0.000000e+00 881.0
14 TraesCS4A01G021700 chr4B 83.246 191 17 3 297 482 564875347 564875167 1.540000e-35 161.0
15 TraesCS4A01G021700 chr4B 89.583 48 4 1 1484 1531 147367908 147367862 5.770000e-05 60.2
16 TraesCS4A01G021700 chr4B 91.892 37 3 0 1896 1932 658974 659010 1.000000e-02 52.8
17 TraesCS4A01G021700 chr4B 100.000 28 0 0 4166 4193 564871108 564871081 1.000000e-02 52.8
18 TraesCS4A01G021700 chr2A 88.325 197 20 2 20 213 117393012 117393208 3.210000e-57 233.0
19 TraesCS4A01G021700 chr2A 93.204 103 6 1 1730 1831 44762153 44762255 3.330000e-32 150.0
20 TraesCS4A01G021700 chr2D 87.437 199 24 1 16 213 128025969 128025771 1.500000e-55 228.0
21 TraesCS4A01G021700 chr2D 93.023 43 2 1 1485 1527 612542484 612542443 1.610000e-05 62.1
22 TraesCS4A01G021700 chr1B 87.500 200 22 3 16 213 349715804 349715606 1.500000e-55 228.0
23 TraesCS4A01G021700 chr1B 93.023 43 2 1 1485 1527 486457652 486457611 1.610000e-05 62.1
24 TraesCS4A01G021700 chr6B 87.065 201 24 2 15 213 612537097 612537297 5.380000e-55 226.0
25 TraesCS4A01G021700 chr1A 87.310 197 24 1 18 213 440899264 440899068 1.930000e-54 224.0
26 TraesCS4A01G021700 chr5D 86.869 198 23 3 18 213 7682268 7682464 9.000000e-53 219.0
27 TraesCS4A01G021700 chr3A 86.869 198 22 4 18 213 589751379 589751574 9.000000e-53 219.0
28 TraesCS4A01G021700 chr6A 86.000 200 27 1 15 213 549989777 549989976 4.190000e-51 213.0
29 TraesCS4A01G021700 chr6A 95.455 44 1 1 485 527 15947108 15947065 9.590000e-08 69.4
30 TraesCS4A01G021700 chr7B 85.294 204 28 2 11 213 606481720 606481922 5.420000e-50 209.0
31 TraesCS4A01G021700 chr7B 78.814 118 18 4 1480 1594 476200015 476199902 7.420000e-09 73.1
32 TraesCS4A01G021700 chr6D 97.802 91 2 0 1743 1833 63329718 63329808 1.990000e-34 158.0
33 TraesCS4A01G021700 chr6D 86.792 53 6 1 1480 1532 230778597 230778648 2.080000e-04 58.4
34 TraesCS4A01G021700 chr3B 96.774 93 3 0 1746 1838 544926125 544926033 7.160000e-34 156.0
35 TraesCS4A01G021700 chr7A 95.789 95 4 0 1745 1839 172464733 172464827 2.570000e-33 154.0
36 TraesCS4A01G021700 chr2B 94.949 99 4 1 1742 1839 445897950 445897852 2.570000e-33 154.0
37 TraesCS4A01G021700 chr2B 93.478 46 1 2 1485 1529 139360368 139360324 3.450000e-07 67.6
38 TraesCS4A01G021700 chr5B 94.845 97 5 0 1743 1839 480252608 480252704 9.260000e-33 152.0
39 TraesCS4A01G021700 chr5B 94.000 100 5 1 1746 1845 125481621 125481523 3.330000e-32 150.0
40 TraesCS4A01G021700 chrUn 94.000 100 5 1 1733 1831 332242559 332242460 3.330000e-32 150.0
41 TraesCS4A01G021700 chr5A 95.122 41 1 1 1492 1532 611022648 611022609 4.460000e-06 63.9
42 TraesCS4A01G021700 chr7D 88.235 51 2 3 1470 1520 4028270 4028224 2.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G021700 chr4A 15646447 15651784 5337 False 3323.666667 9858 90.643333 1 5338 3 chr4A.!!$F2 5337
1 TraesCS4A01G021700 chr4D 451282630 451290450 7820 True 1011.500000 2309 91.393500 217 5305 6 chr4D.!!$R2 5088
2 TraesCS4A01G021700 chr4B 564870888 564875347 4459 True 693.450000 1679 91.404250 297 4337 4 chr4B.!!$R2 4040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 891 0.106719 CGCCATCCATAACCCAACCT 60.107 55.0 0.0 0.0 0.00 3.50 F
908 1047 0.107703 TCACCACCGAATCTGGATGC 60.108 55.0 0.0 0.0 32.55 3.91 F
1759 1968 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.0 0.0 0.0 0.00 3.62 F
2556 2985 0.179059 ATGCCGATGACGCCATAACA 60.179 50.0 0.0 0.0 35.87 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2648 0.250338 GACCAGTCTCGGCCTTGTTT 60.250 55.000 0.00 0.0 0.00 2.83 R
2249 2674 0.904865 ATCTCCAGTTCTGACCGGCA 60.905 55.000 0.00 0.0 0.00 5.69 R
2810 3259 1.202452 GCCCATTGCTCTATGTTTGGC 60.202 52.381 0.00 0.0 36.87 4.52 R
4476 8363 1.079490 ACTCATGAGAGAGGGGTTGGA 59.921 52.381 29.27 0.0 44.98 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.439679 GTCAAGCCGACAGTTTAGGG 58.560 55.000 0.00 0.00 44.69 3.53
21 22 0.321298 TCAAGCCGACAGTTTAGGGC 60.321 55.000 0.00 0.00 45.91 5.19
24 25 3.364277 GCCGACAGTTTAGGGCTAG 57.636 57.895 0.00 0.00 42.29 3.42
25 26 0.535797 GCCGACAGTTTAGGGCTAGT 59.464 55.000 0.00 0.00 42.29 2.57
26 27 1.066358 GCCGACAGTTTAGGGCTAGTT 60.066 52.381 0.00 0.00 42.29 2.24
27 28 2.889852 CCGACAGTTTAGGGCTAGTTC 58.110 52.381 0.00 0.00 0.00 3.01
28 29 2.496470 CCGACAGTTTAGGGCTAGTTCT 59.504 50.000 0.00 0.00 0.00 3.01
29 30 3.056035 CCGACAGTTTAGGGCTAGTTCTT 60.056 47.826 0.00 0.00 0.00 2.52
30 31 4.562963 CCGACAGTTTAGGGCTAGTTCTTT 60.563 45.833 0.00 0.00 0.00 2.52
31 32 4.995487 CGACAGTTTAGGGCTAGTTCTTTT 59.005 41.667 0.00 0.00 0.00 2.27
32 33 5.107065 CGACAGTTTAGGGCTAGTTCTTTTG 60.107 44.000 0.00 0.00 0.00 2.44
33 34 5.070685 ACAGTTTAGGGCTAGTTCTTTTGG 58.929 41.667 0.00 0.00 0.00 3.28
34 35 4.459337 CAGTTTAGGGCTAGTTCTTTTGGG 59.541 45.833 0.00 0.00 0.00 4.12
35 36 2.801077 TAGGGCTAGTTCTTTTGGGC 57.199 50.000 0.00 0.00 0.00 5.36
36 37 0.322546 AGGGCTAGTTCTTTTGGGCG 60.323 55.000 0.00 0.00 0.00 6.13
37 38 1.313091 GGGCTAGTTCTTTTGGGCGG 61.313 60.000 0.00 0.00 0.00 6.13
38 39 1.506718 GCTAGTTCTTTTGGGCGGC 59.493 57.895 0.00 0.00 0.00 6.53
39 40 0.960861 GCTAGTTCTTTTGGGCGGCT 60.961 55.000 9.56 0.00 0.00 5.52
40 41 1.534729 CTAGTTCTTTTGGGCGGCTT 58.465 50.000 9.56 0.00 0.00 4.35
41 42 2.706890 CTAGTTCTTTTGGGCGGCTTA 58.293 47.619 9.56 0.00 0.00 3.09
42 43 1.989706 AGTTCTTTTGGGCGGCTTAA 58.010 45.000 9.56 1.63 0.00 1.85
43 44 2.312390 AGTTCTTTTGGGCGGCTTAAA 58.688 42.857 9.56 8.36 0.00 1.52
44 45 2.696187 AGTTCTTTTGGGCGGCTTAAAA 59.304 40.909 9.56 15.26 0.00 1.52
45 46 3.133183 AGTTCTTTTGGGCGGCTTAAAAA 59.867 39.130 19.13 16.49 0.00 1.94
64 65 5.959618 AAAAATAAGTTGTCTCTTCCCGG 57.040 39.130 0.00 0.00 0.00 5.73
65 66 2.693267 ATAAGTTGTCTCTTCCCGGC 57.307 50.000 0.00 0.00 0.00 6.13
66 67 1.640917 TAAGTTGTCTCTTCCCGGCT 58.359 50.000 0.00 0.00 0.00 5.52
67 68 0.765510 AAGTTGTCTCTTCCCGGCTT 59.234 50.000 0.00 0.00 0.00 4.35
68 69 1.640917 AGTTGTCTCTTCCCGGCTTA 58.359 50.000 0.00 0.00 0.00 3.09
69 70 1.975680 AGTTGTCTCTTCCCGGCTTAA 59.024 47.619 0.00 0.00 0.00 1.85
70 71 2.370849 AGTTGTCTCTTCCCGGCTTAAA 59.629 45.455 0.00 0.00 0.00 1.52
71 72 3.143728 GTTGTCTCTTCCCGGCTTAAAA 58.856 45.455 0.00 0.00 0.00 1.52
72 73 3.495434 TGTCTCTTCCCGGCTTAAAAA 57.505 42.857 0.00 0.00 0.00 1.94
97 98 9.890915 AAATAAGCCACCCCTAATATTTTATGA 57.109 29.630 0.00 0.00 0.00 2.15
98 99 9.533831 AATAAGCCACCCCTAATATTTTATGAG 57.466 33.333 0.00 0.00 0.00 2.90
99 100 6.780198 AGCCACCCCTAATATTTTATGAGA 57.220 37.500 0.00 0.00 0.00 3.27
100 101 6.543735 AGCCACCCCTAATATTTTATGAGAC 58.456 40.000 0.00 0.00 0.00 3.36
101 102 6.332901 AGCCACCCCTAATATTTTATGAGACT 59.667 38.462 0.00 0.00 0.00 3.24
102 103 7.004691 GCCACCCCTAATATTTTATGAGACTT 58.995 38.462 0.00 0.00 0.00 3.01
103 104 7.175119 GCCACCCCTAATATTTTATGAGACTTC 59.825 40.741 0.00 0.00 0.00 3.01
104 105 8.440771 CCACCCCTAATATTTTATGAGACTTCT 58.559 37.037 0.00 0.00 0.00 2.85
122 123 9.865484 GAGACTTCTAAATTATTTATTCCGTGC 57.135 33.333 0.00 0.00 0.00 5.34
123 124 9.614792 AGACTTCTAAATTATTTATTCCGTGCT 57.385 29.630 0.00 0.00 0.00 4.40
134 135 9.880157 TTATTTATTCCGTGCTAGTTTAGAAGT 57.120 29.630 0.00 0.00 0.00 3.01
135 136 7.823149 TTTATTCCGTGCTAGTTTAGAAGTC 57.177 36.000 0.00 0.00 0.00 3.01
136 137 3.863142 TCCGTGCTAGTTTAGAAGTCC 57.137 47.619 0.00 0.00 0.00 3.85
137 138 3.428532 TCCGTGCTAGTTTAGAAGTCCT 58.571 45.455 0.00 0.00 0.00 3.85
138 139 4.592942 TCCGTGCTAGTTTAGAAGTCCTA 58.407 43.478 0.00 0.00 0.00 2.94
139 140 5.012239 TCCGTGCTAGTTTAGAAGTCCTAA 58.988 41.667 0.00 0.00 35.66 2.69
140 141 5.655532 TCCGTGCTAGTTTAGAAGTCCTAAT 59.344 40.000 0.00 0.00 37.22 1.73
141 142 5.749109 CCGTGCTAGTTTAGAAGTCCTAATG 59.251 44.000 0.00 0.00 37.22 1.90
142 143 6.405508 CCGTGCTAGTTTAGAAGTCCTAATGA 60.406 42.308 0.00 0.00 37.22 2.57
143 144 7.033791 CGTGCTAGTTTAGAAGTCCTAATGAA 58.966 38.462 0.00 0.00 37.22 2.57
144 145 7.707035 CGTGCTAGTTTAGAAGTCCTAATGAAT 59.293 37.037 0.00 0.00 37.22 2.57
153 154 7.061566 AGAAGTCCTAATGAATAAGAGAGGC 57.938 40.000 0.00 0.00 0.00 4.70
154 155 5.461032 AGTCCTAATGAATAAGAGAGGCG 57.539 43.478 0.00 0.00 0.00 5.52
155 156 4.282195 AGTCCTAATGAATAAGAGAGGCGG 59.718 45.833 0.00 0.00 0.00 6.13
156 157 3.006967 TCCTAATGAATAAGAGAGGCGGC 59.993 47.826 0.00 0.00 0.00 6.53
157 158 3.007398 CCTAATGAATAAGAGAGGCGGCT 59.993 47.826 13.09 13.09 0.00 5.52
158 159 3.567478 AATGAATAAGAGAGGCGGCTT 57.433 42.857 14.76 2.75 0.00 4.35
159 160 4.689612 AATGAATAAGAGAGGCGGCTTA 57.310 40.909 14.76 0.90 0.00 3.09
160 161 4.899352 ATGAATAAGAGAGGCGGCTTAT 57.101 40.909 14.76 4.91 38.57 1.73
161 162 3.995199 TGAATAAGAGAGGCGGCTTATG 58.005 45.455 14.76 0.00 37.38 1.90
162 163 3.641436 TGAATAAGAGAGGCGGCTTATGA 59.359 43.478 14.76 0.00 37.38 2.15
163 164 4.100963 TGAATAAGAGAGGCGGCTTATGAA 59.899 41.667 14.76 0.00 37.38 2.57
164 165 4.689612 ATAAGAGAGGCGGCTTATGAAA 57.310 40.909 14.76 0.00 36.31 2.69
165 166 3.350219 AAGAGAGGCGGCTTATGAAAA 57.650 42.857 14.76 0.00 0.00 2.29
166 167 3.350219 AGAGAGGCGGCTTATGAAAAA 57.650 42.857 14.76 0.00 0.00 1.94
184 185 2.388310 AAAGCTAAGGAGAAGACGGC 57.612 50.000 0.00 0.00 0.00 5.68
185 186 1.562783 AAGCTAAGGAGAAGACGGCT 58.437 50.000 0.00 0.00 0.00 5.52
186 187 1.562783 AGCTAAGGAGAAGACGGCTT 58.437 50.000 1.10 1.10 36.96 4.35
187 188 2.736347 AGCTAAGGAGAAGACGGCTTA 58.264 47.619 1.76 0.00 33.61 3.09
188 189 3.301274 AGCTAAGGAGAAGACGGCTTAT 58.699 45.455 1.76 0.00 33.61 1.73
189 190 3.707102 AGCTAAGGAGAAGACGGCTTATT 59.293 43.478 1.76 0.00 33.61 1.40
190 191 4.162509 AGCTAAGGAGAAGACGGCTTATTT 59.837 41.667 1.76 0.00 33.61 1.40
191 192 4.876679 GCTAAGGAGAAGACGGCTTATTTT 59.123 41.667 1.76 2.28 33.61 1.82
192 193 5.354513 GCTAAGGAGAAGACGGCTTATTTTT 59.645 40.000 1.76 1.88 33.61 1.94
214 215 8.522542 TTTTTAAGCTACCAAAAGAACTGGTA 57.477 30.769 1.98 1.98 45.58 3.25
215 216 8.522542 TTTTAAGCTACCAAAAGAACTGGTAA 57.477 30.769 3.49 0.00 46.34 2.85
219 220 7.923414 AGCTACCAAAAGAACTGGTAATTAG 57.077 36.000 3.49 0.00 46.34 1.73
230 231 8.112016 AGAACTGGTAATTAGAAAGAAAAGGC 57.888 34.615 0.00 0.00 0.00 4.35
257 259 9.358872 GAGCTTCCTTACAAAGAAAAATATTGG 57.641 33.333 0.00 0.00 0.00 3.16
268 270 6.926630 AGAAAAATATTGGTTGGCTGGTAA 57.073 33.333 0.00 0.00 0.00 2.85
335 337 2.363788 TAAGAGTGCCACGTAAGCTG 57.636 50.000 10.69 0.00 45.62 4.24
374 376 7.000472 AGGAGACAGAAACATGAAGAAAATGA 59.000 34.615 0.00 0.00 0.00 2.57
375 377 7.040823 AGGAGACAGAAACATGAAGAAAATGAC 60.041 37.037 0.00 0.00 0.00 3.06
527 663 7.680730 AGATTACATGGCGGACTTAAGATAAT 58.319 34.615 10.09 0.00 0.00 1.28
552 688 0.602638 TACGTGTGCCCTGAAAGCTG 60.603 55.000 0.00 0.00 0.00 4.24
556 692 0.764890 TGTGCCCTGAAAGCTGTACT 59.235 50.000 0.00 0.00 0.00 2.73
563 699 2.932614 CCTGAAAGCTGTACTTCATCCG 59.067 50.000 0.00 0.00 37.75 4.18
581 717 9.534565 CTTCATCCGATCCATATTAATTATCGT 57.465 33.333 15.14 2.79 38.15 3.73
584 720 9.313118 CATCCGATCCATATTAATTATCGTTCA 57.687 33.333 15.14 5.57 38.15 3.18
675 812 7.841915 TTCAGCAACAACTAATATGAATCGA 57.158 32.000 0.00 0.00 0.00 3.59
676 813 7.841915 TCAGCAACAACTAATATGAATCGAA 57.158 32.000 0.00 0.00 0.00 3.71
677 814 7.909267 TCAGCAACAACTAATATGAATCGAAG 58.091 34.615 0.00 0.00 0.00 3.79
678 815 7.011389 TCAGCAACAACTAATATGAATCGAAGG 59.989 37.037 0.00 0.00 0.00 3.46
679 816 6.260936 AGCAACAACTAATATGAATCGAAGGG 59.739 38.462 0.00 0.00 0.00 3.95
680 817 6.260050 GCAACAACTAATATGAATCGAAGGGA 59.740 38.462 0.00 0.00 0.00 4.20
681 818 7.519008 GCAACAACTAATATGAATCGAAGGGAG 60.519 40.741 0.00 0.00 0.00 4.30
682 819 6.525629 ACAACTAATATGAATCGAAGGGAGG 58.474 40.000 0.00 0.00 0.00 4.30
683 820 6.326583 ACAACTAATATGAATCGAAGGGAGGA 59.673 38.462 0.00 0.00 0.00 3.71
684 821 6.996180 ACTAATATGAATCGAAGGGAGGAA 57.004 37.500 0.00 0.00 0.00 3.36
685 822 7.560796 ACTAATATGAATCGAAGGGAGGAAT 57.439 36.000 0.00 0.00 0.00 3.01
686 823 8.666129 ACTAATATGAATCGAAGGGAGGAATA 57.334 34.615 0.00 0.00 0.00 1.75
687 824 9.273137 ACTAATATGAATCGAAGGGAGGAATAT 57.727 33.333 0.00 0.00 0.00 1.28
690 827 9.813826 AATATGAATCGAAGGGAGGAATATTTT 57.186 29.630 0.00 0.00 0.00 1.82
691 828 9.813826 ATATGAATCGAAGGGAGGAATATTTTT 57.186 29.630 0.00 0.00 0.00 1.94
754 891 0.106719 CGCCATCCATAACCCAACCT 60.107 55.000 0.00 0.00 0.00 3.50
811 950 1.402787 GGGCCGATTTTGTCCATCAT 58.597 50.000 0.00 0.00 0.00 2.45
893 1032 2.427506 GAGTCCACTGAACCATTCACC 58.572 52.381 0.00 0.00 35.46 4.02
895 1034 1.880027 GTCCACTGAACCATTCACCAC 59.120 52.381 0.00 0.00 35.46 4.16
900 1039 2.224769 ACTGAACCATTCACCACCGAAT 60.225 45.455 0.00 0.00 36.00 3.34
908 1047 0.107703 TCACCACCGAATCTGGATGC 60.108 55.000 0.00 0.00 32.55 3.91
1115 1254 6.296026 TCTAGCTAGCTCCTTTAAGAGAGAG 58.704 44.000 23.26 8.26 35.82 3.20
1117 1256 5.133221 AGCTAGCTCCTTTAAGAGAGAGAG 58.867 45.833 12.68 9.50 35.82 3.20
1311 1450 2.059490 ACCAGGTAAACCCAAGCACTA 58.941 47.619 0.00 0.00 36.42 2.74
1312 1451 2.039879 ACCAGGTAAACCCAAGCACTAG 59.960 50.000 0.00 0.00 36.42 2.57
1313 1452 2.084546 CAGGTAAACCCAAGCACTAGC 58.915 52.381 0.00 0.00 37.69 3.42
1314 1453 1.985895 AGGTAAACCCAAGCACTAGCT 59.014 47.619 0.00 0.00 45.91 3.32
1315 1454 3.055385 CAGGTAAACCCAAGCACTAGCTA 60.055 47.826 0.00 0.00 44.05 3.32
1316 1455 3.780850 AGGTAAACCCAAGCACTAGCTAT 59.219 43.478 0.00 0.00 44.05 2.97
1319 1458 7.543905 AGGTAAACCCAAGCACTAGCTATGTA 61.544 42.308 0.00 0.00 44.05 2.29
1320 1459 9.467382 AGGTAAACCCAAGCACTAGCTATGTAC 62.467 44.444 0.00 0.00 44.05 2.90
1347 1510 6.127054 ACTCCTATTCATTTTCTGGACGATGA 60.127 38.462 0.00 0.00 0.00 2.92
1371 1534 3.727258 TGAATGGTGGCCTCCGGG 61.727 66.667 18.78 0.00 0.00 5.73
1409 1572 6.097915 TCTATCTCACCTCGAAAACACTTT 57.902 37.500 0.00 0.00 0.00 2.66
1410 1573 5.926542 TCTATCTCACCTCGAAAACACTTTG 59.073 40.000 0.00 0.00 0.00 2.77
1441 1604 4.035675 GCTGTAATGGGATTGAAGTGCTAC 59.964 45.833 0.00 0.00 0.00 3.58
1471 1634 8.989653 AGTTAGACTATTCAGTTAGAAGTTGC 57.010 34.615 0.00 0.00 40.15 4.17
1472 1635 8.585881 AGTTAGACTATTCAGTTAGAAGTTGCA 58.414 33.333 0.00 0.00 40.15 4.08
1473 1636 9.204570 GTTAGACTATTCAGTTAGAAGTTGCAA 57.795 33.333 0.00 0.00 40.15 4.08
1474 1637 7.659652 AGACTATTCAGTTAGAAGTTGCAAC 57.340 36.000 22.17 22.17 40.15 4.17
1475 1638 7.217200 AGACTATTCAGTTAGAAGTTGCAACA 58.783 34.615 30.11 7.83 40.15 3.33
1476 1639 7.880195 AGACTATTCAGTTAGAAGTTGCAACAT 59.120 33.333 30.11 20.04 40.15 2.71
1477 1640 9.151471 GACTATTCAGTTAGAAGTTGCAACATA 57.849 33.333 30.11 16.90 40.15 2.29
1478 1641 9.155975 ACTATTCAGTTAGAAGTTGCAACATAG 57.844 33.333 30.11 22.70 40.15 2.23
1482 1645 7.438564 TCAGTTAGAAGTTGCAACATAGTACA 58.561 34.615 30.11 6.12 0.00 2.90
1489 1652 6.354794 AGTTGCAACATAGTACAACCTCTA 57.645 37.500 30.11 0.00 42.61 2.43
1507 1670 9.680315 CAACCTCTACTTCCTAAATATAAGACG 57.320 37.037 0.00 0.00 0.00 4.18
1508 1671 8.993404 ACCTCTACTTCCTAAATATAAGACGT 57.007 34.615 0.00 0.00 0.00 4.34
1509 1672 9.418839 ACCTCTACTTCCTAAATATAAGACGTT 57.581 33.333 0.00 0.00 0.00 3.99
1531 1694 8.544597 ACGTTTTGGTAGTTCAATTTAAATTGC 58.455 29.630 28.54 18.75 44.15 3.56
1532 1695 8.760569 CGTTTTGGTAGTTCAATTTAAATTGCT 58.239 29.630 28.54 23.26 44.15 3.91
1537 1700 8.911247 GGTAGTTCAATTTAAATTGCTACCTG 57.089 34.615 35.92 20.18 45.90 4.00
1538 1701 8.520351 GGTAGTTCAATTTAAATTGCTACCTGT 58.480 33.333 35.92 23.64 45.90 4.00
1646 1809 7.889469 TCATTCAATATACCCCGTCTTAGTAC 58.111 38.462 0.00 0.00 0.00 2.73
1648 1811 7.844493 TTCAATATACCCCGTCTTAGTACAT 57.156 36.000 0.00 0.00 0.00 2.29
1650 1813 5.656213 ATATACCCCGTCTTAGTACATGC 57.344 43.478 0.00 0.00 0.00 4.06
1651 1814 1.861982 ACCCCGTCTTAGTACATGCT 58.138 50.000 0.00 0.00 0.00 3.79
1652 1815 1.480954 ACCCCGTCTTAGTACATGCTG 59.519 52.381 0.00 0.00 0.00 4.41
1653 1816 1.202533 CCCCGTCTTAGTACATGCTGG 60.203 57.143 0.00 0.00 0.00 4.85
1654 1817 1.480954 CCCGTCTTAGTACATGCTGGT 59.519 52.381 0.00 0.00 0.00 4.00
1655 1818 2.540515 CCGTCTTAGTACATGCTGGTG 58.459 52.381 0.00 0.00 0.00 4.17
1656 1819 2.540515 CGTCTTAGTACATGCTGGTGG 58.459 52.381 0.00 0.00 0.00 4.61
1752 1961 2.676748 CTCTTCCAGCATCTACTCCCT 58.323 52.381 0.00 0.00 0.00 4.20
1753 1962 2.627699 CTCTTCCAGCATCTACTCCCTC 59.372 54.545 0.00 0.00 0.00 4.30
1754 1963 1.691434 CTTCCAGCATCTACTCCCTCC 59.309 57.143 0.00 0.00 0.00 4.30
1755 1964 0.468214 TCCAGCATCTACTCCCTCCG 60.468 60.000 0.00 0.00 0.00 4.63
1756 1965 0.757188 CCAGCATCTACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
1757 1966 1.115467 CAGCATCTACTCCCTCCGTT 58.885 55.000 0.00 0.00 0.00 4.44
1758 1967 1.067821 CAGCATCTACTCCCTCCGTTC 59.932 57.143 0.00 0.00 0.00 3.95
1759 1968 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
1760 1969 1.776662 CATCTACTCCCTCCGTTCCA 58.223 55.000 0.00 0.00 0.00 3.53
1761 1970 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1762 1971 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1763 1972 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1764 1973 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1765 1974 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1766 1975 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1767 1976 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1768 1977 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1769 1978 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1770 1979 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1771 1980 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1772 1981 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1773 1982 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1774 1983 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1775 1984 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1776 1985 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1777 1986 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1778 1987 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1779 1988 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1780 1989 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1781 1990 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1782 1991 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1783 1992 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1784 1993 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1793 2002 8.361592 TGACTCAACTTTGTACTAACTTTAGC 57.638 34.615 0.00 0.00 34.09 3.09
1794 2003 7.982919 TGACTCAACTTTGTACTAACTTTAGCA 59.017 33.333 0.00 0.00 34.09 3.49
1795 2004 8.904099 ACTCAACTTTGTACTAACTTTAGCAT 57.096 30.769 0.00 0.00 34.09 3.79
1796 2005 9.991906 ACTCAACTTTGTACTAACTTTAGCATA 57.008 29.630 0.00 0.00 34.09 3.14
1805 2014 9.991906 TGTACTAACTTTAGCATAAAGTTGAGT 57.008 29.630 26.45 24.30 46.41 3.41
1808 2017 9.726438 ACTAACTTTAGCATAAAGTTGAGTCAT 57.274 29.630 26.45 10.19 46.41 3.06
1810 2019 8.854614 AACTTTAGCATAAAGTTGAGTCATCT 57.145 30.769 20.99 0.00 45.58 2.90
1811 2020 9.944376 AACTTTAGCATAAAGTTGAGTCATCTA 57.056 29.630 20.99 0.00 45.58 1.98
1817 2026 8.680903 AGCATAAAGTTGAGTCATCTATTTTGG 58.319 33.333 4.14 0.00 0.00 3.28
1818 2027 8.677300 GCATAAAGTTGAGTCATCTATTTTGGA 58.323 33.333 4.14 0.00 0.00 3.53
1821 2030 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1822 2031 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1823 2032 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1824 2033 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1825 2034 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1826 2035 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1827 2036 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1828 2037 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1829 2038 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1830 2039 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1831 2040 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
1881 2167 8.839310 TTTCAAGGAAATGAGAAAACAACAAA 57.161 26.923 0.00 0.00 0.00 2.83
1883 2169 9.447157 TTCAAGGAAATGAGAAAACAACAAATT 57.553 25.926 0.00 0.00 0.00 1.82
1885 2171 9.706846 CAAGGAAATGAGAAAACAACAAATTTC 57.293 29.630 0.00 0.00 36.11 2.17
1997 2407 3.026707 TCTTCATCCTGTATCCACCGA 57.973 47.619 0.00 0.00 0.00 4.69
2003 2413 2.889512 TCCTGTATCCACCGATAGCAT 58.110 47.619 0.00 0.00 31.46 3.79
2006 2416 1.970640 TGTATCCACCGATAGCATGCT 59.029 47.619 25.99 25.99 31.46 3.79
2045 2456 1.137675 CATCTCTGGCATCCGTCTCAA 59.862 52.381 0.00 0.00 0.00 3.02
2064 2475 4.915704 TCAACGGAGCAAACTTGTTTAAG 58.084 39.130 0.00 0.00 39.86 1.85
2071 2482 4.874970 AGCAAACTTGTTTAAGCTCATGG 58.125 39.130 5.58 0.00 37.43 3.66
2094 2505 5.349809 GTCTTGTAGAAGTAGTGGCCATAC 58.650 45.833 9.72 12.71 0.00 2.39
2122 2533 2.070783 GATGTAGACCGAAAAACGCCA 58.929 47.619 0.00 0.00 41.07 5.69
2136 2547 4.876701 GCCAACGGCCATGATCTA 57.123 55.556 2.24 0.00 44.06 1.98
2139 2550 1.586422 CCAACGGCCATGATCTACAG 58.414 55.000 2.24 0.00 0.00 2.74
2147 2558 3.252701 GGCCATGATCTACAGAGCAAATG 59.747 47.826 0.00 0.00 44.14 2.32
2149 2560 4.458397 CCATGATCTACAGAGCAAATGGT 58.542 43.478 0.70 0.00 44.14 3.55
2223 2648 2.705658 ACACAAATCTCACTCACTCCCA 59.294 45.455 0.00 0.00 0.00 4.37
2249 2674 0.250338 GCCGAGACTGGTCAACCTTT 60.250 55.000 0.10 0.00 36.82 3.11
2298 2723 0.593128 GATGCACGGCCATGTTATCC 59.407 55.000 2.24 0.00 0.00 2.59
2314 2739 0.392706 ATCCGATCCGCATTGTAGCA 59.607 50.000 0.00 0.00 0.00 3.49
2319 2744 2.487934 GATCCGCATTGTAGCATCACT 58.512 47.619 0.00 0.00 0.00 3.41
2323 2748 1.596260 CGCATTGTAGCATCACTGAGG 59.404 52.381 3.50 0.00 0.00 3.86
2367 2792 5.584551 ACCCAAACCTGAAGAACTAGATT 57.415 39.130 0.00 0.00 0.00 2.40
2368 2793 5.561679 ACCCAAACCTGAAGAACTAGATTC 58.438 41.667 0.00 0.00 37.62 2.52
2369 2794 5.073144 ACCCAAACCTGAAGAACTAGATTCA 59.927 40.000 0.00 3.32 40.09 2.57
2370 2795 5.412904 CCCAAACCTGAAGAACTAGATTCAC 59.587 44.000 0.00 0.00 40.09 3.18
2371 2796 5.997746 CCAAACCTGAAGAACTAGATTCACA 59.002 40.000 0.00 1.76 40.09 3.58
2372 2797 6.073003 CCAAACCTGAAGAACTAGATTCACAC 60.073 42.308 0.00 0.00 40.09 3.82
2383 2812 3.567579 ATTCACACACCAGGGGCGG 62.568 63.158 0.00 0.00 0.00 6.13
2401 2830 3.495806 GGCGGATCCAGAGAGAAAATGAT 60.496 47.826 13.41 0.00 34.01 2.45
2404 2833 4.202295 CGGATCCAGAGAGAAAATGATCCA 60.202 45.833 13.41 0.00 45.47 3.41
2418 2847 3.740631 TGATCCAGTGTGCTAGCATAG 57.259 47.619 22.51 10.83 43.09 2.23
2434 2863 9.123902 TGCTAGCATAGAATCACACATATTTTT 57.876 29.630 14.93 0.00 42.77 1.94
2465 2894 2.999185 AAAGATGGGGGTGTCACATT 57.001 45.000 5.12 0.00 0.00 2.71
2501 2930 8.568794 CATGAATCAATGATATGAAGAAGCACT 58.431 33.333 0.00 0.00 32.06 4.40
2556 2985 0.179059 ATGCCGATGACGCCATAACA 60.179 50.000 0.00 0.00 35.87 2.41
2569 2998 1.846439 CCATAACATCTCACCACCCCT 59.154 52.381 0.00 0.00 0.00 4.79
2579 3008 1.536662 ACCACCCCTGACTGGAGAC 60.537 63.158 0.00 0.00 38.35 3.36
2665 3095 2.511600 GCCGGAATGACAGACGGG 60.512 66.667 5.05 9.57 46.04 5.28
2704 3134 1.203212 TCTCACCGGGAAAGAGGGTAA 60.203 52.381 6.32 0.00 31.51 2.85
2718 3148 1.444672 GGTAAATAGTCCGCCGCCT 59.555 57.895 0.00 0.00 0.00 5.52
2761 3210 4.660105 GACCCGTACATATAGAAGATCGC 58.340 47.826 0.00 0.00 0.00 4.58
2775 3224 3.757248 ATCGCCTGCCCGTTGATCC 62.757 63.158 0.00 0.00 0.00 3.36
2780 3229 1.668419 CCTGCCCGTTGATCCTTAAG 58.332 55.000 0.00 0.00 0.00 1.85
2805 3254 5.997385 ACAACATCATTTCTAAACGACCAC 58.003 37.500 0.00 0.00 0.00 4.16
2808 3257 6.182039 ACATCATTTCTAAACGACCACATG 57.818 37.500 0.00 0.00 0.00 3.21
2809 3258 5.123820 ACATCATTTCTAAACGACCACATGG 59.876 40.000 0.00 0.00 42.17 3.66
2810 3259 4.006989 TCATTTCTAAACGACCACATGGG 58.993 43.478 2.32 0.00 44.81 4.00
2822 3271 2.026641 CCACATGGGCCAAACATAGAG 58.973 52.381 11.89 0.00 0.00 2.43
2829 3278 1.410153 GGCCAAACATAGAGCAATGGG 59.590 52.381 0.00 0.00 0.00 4.00
2861 3310 7.645340 GCATTGTCTTAAATCTGCGTTTATGAT 59.355 33.333 0.00 0.00 33.26 2.45
2888 3354 3.764434 AGCCAGTCCTCGTATATACATGG 59.236 47.826 13.22 12.81 0.00 3.66
2909 3375 4.464262 GGAGCAATGGATCCGACC 57.536 61.111 7.39 0.36 40.28 4.79
2915 3381 1.134946 GCAATGGATCCGACCAAAAGG 59.865 52.381 7.39 0.00 43.47 3.11
2938 3404 6.279882 GGAAGTGATGTTCCATTTGAAACAA 58.720 36.000 0.00 0.00 44.89 2.83
2964 3684 3.335579 ACGGCAAAAGAGATGTCCTAAC 58.664 45.455 0.00 0.00 0.00 2.34
2973 3693 9.383519 CAAAAGAGATGTCCTAACATTTAGCTA 57.616 33.333 0.00 0.00 46.20 3.32
3005 3945 2.425539 TCGTCATTCTTCAAGCATGCA 58.574 42.857 21.98 0.00 0.00 3.96
3006 3946 2.160219 TCGTCATTCTTCAAGCATGCAC 59.840 45.455 21.98 3.85 0.00 4.57
3007 3947 2.512885 GTCATTCTTCAAGCATGCACG 58.487 47.619 21.98 10.41 0.00 5.34
3008 3948 1.135603 TCATTCTTCAAGCATGCACGC 60.136 47.619 21.98 0.00 0.00 5.34
3035 3975 8.226448 GCCGATTTCATCAGATCATAAACTAAG 58.774 37.037 0.00 0.00 0.00 2.18
3064 4005 7.787725 AGGTTCCATGTAACGAGAAATAATC 57.212 36.000 0.00 0.00 0.00 1.75
3077 4041 5.221185 CGAGAAATAATCACTCCCTTCGGTA 60.221 44.000 0.00 0.00 0.00 4.02
3091 4055 3.381949 CTTCGGTAGGATTTAGAAGGCG 58.618 50.000 0.00 0.00 35.84 5.52
3210 4190 8.509690 ACATGAGCGGAAAATGATCTATAATTG 58.490 33.333 0.00 0.00 0.00 2.32
3256 4299 1.853963 TCAGCTAGTGGAGAAGGACC 58.146 55.000 0.00 0.00 0.00 4.46
3528 4571 2.687200 ATCTACCACGGCCAGGCA 60.687 61.111 15.19 0.00 0.00 4.75
3646 4689 2.273449 GGGCCTACATGCAGCAGT 59.727 61.111 0.84 1.91 0.00 4.40
3747 4790 4.119363 TGCCTCATGGAGCAGGGC 62.119 66.667 6.49 0.00 42.73 5.19
3882 4925 3.147595 CGGATCAGGGCGGAGACA 61.148 66.667 0.00 0.00 37.00 3.41
4217 5262 5.445407 GCGTACGTGTTAATCAATGTGACAT 60.445 40.000 17.90 0.00 0.00 3.06
4218 5263 6.237622 GCGTACGTGTTAATCAATGTGACATA 60.238 38.462 17.90 0.00 0.00 2.29
4219 5264 7.108630 CGTACGTGTTAATCAATGTGACATAC 58.891 38.462 7.22 0.00 0.00 2.39
4220 5265 7.201367 CGTACGTGTTAATCAATGTGACATACA 60.201 37.037 7.22 0.00 44.87 2.29
4221 5266 7.060600 ACGTGTTAATCAATGTGACATACAG 57.939 36.000 0.00 0.00 43.80 2.74
4389 5456 1.325355 GACCCAATCATCCATGCTGG 58.675 55.000 0.00 0.00 39.43 4.85
4391 5458 0.757561 CCCAATCATCCATGCTGGCA 60.758 55.000 0.00 0.00 37.47 4.92
4410 5477 1.800586 CATGTCATGCGGGTATAGTGC 59.199 52.381 0.00 0.00 0.00 4.40
4411 5478 0.105964 TGTCATGCGGGTATAGTGCC 59.894 55.000 0.00 0.00 0.00 5.01
4414 5481 0.392706 CATGCGGGTATAGTGCCTCA 59.607 55.000 0.00 0.00 0.00 3.86
4415 5482 0.681733 ATGCGGGTATAGTGCCTCAG 59.318 55.000 0.00 0.00 0.00 3.35
4416 5483 0.396556 TGCGGGTATAGTGCCTCAGA 60.397 55.000 0.00 0.00 0.00 3.27
4417 5484 0.032267 GCGGGTATAGTGCCTCAGAC 59.968 60.000 0.00 0.00 0.00 3.51
4418 5485 1.399714 CGGGTATAGTGCCTCAGACA 58.600 55.000 0.00 0.00 0.00 3.41
4420 5487 2.481449 CGGGTATAGTGCCTCAGACAAC 60.481 54.545 0.00 0.00 0.00 3.32
4423 5490 4.434520 GGTATAGTGCCTCAGACAACTTC 58.565 47.826 0.00 0.00 0.00 3.01
4424 5491 3.618690 ATAGTGCCTCAGACAACTTCC 57.381 47.619 0.00 0.00 0.00 3.46
4425 5492 1.428869 AGTGCCTCAGACAACTTCCT 58.571 50.000 0.00 0.00 0.00 3.36
4426 5493 1.771255 AGTGCCTCAGACAACTTCCTT 59.229 47.619 0.00 0.00 0.00 3.36
4427 5494 2.147150 GTGCCTCAGACAACTTCCTTC 58.853 52.381 0.00 0.00 0.00 3.46
4428 5495 2.050144 TGCCTCAGACAACTTCCTTCT 58.950 47.619 0.00 0.00 0.00 2.85
4429 5496 2.439507 TGCCTCAGACAACTTCCTTCTT 59.560 45.455 0.00 0.00 0.00 2.52
4430 5497 3.117888 TGCCTCAGACAACTTCCTTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
4431 5498 3.885901 GCCTCAGACAACTTCCTTCTTTT 59.114 43.478 0.00 0.00 0.00 2.27
4433 5500 4.884164 CCTCAGACAACTTCCTTCTTTTGT 59.116 41.667 0.00 0.00 34.88 2.83
4434 5501 6.055588 CCTCAGACAACTTCCTTCTTTTGTA 58.944 40.000 0.00 0.00 32.34 2.41
4442 8329 7.973944 ACAACTTCCTTCTTTTGTACAACATTC 59.026 33.333 8.07 0.00 30.39 2.67
4455 8342 8.964476 TTGTACAACATTCTCTTTTCTTCTCT 57.036 30.769 3.59 0.00 0.00 3.10
4459 8346 4.826556 ACATTCTCTTTTCTTCTCTCCCG 58.173 43.478 0.00 0.00 0.00 5.14
4460 8347 3.963428 TTCTCTTTTCTTCTCTCCCGG 57.037 47.619 0.00 0.00 0.00 5.73
4462 8349 3.714144 TCTCTTTTCTTCTCTCCCGGAT 58.286 45.455 0.73 0.00 0.00 4.18
4476 8363 4.962995 TCTCCCGGATAATGTCTCTTTTCT 59.037 41.667 0.73 0.00 0.00 2.52
4490 8377 2.907042 TCTTTTCTCCAACCCCTCTCTC 59.093 50.000 0.00 0.00 0.00 3.20
4515 8402 0.649992 TTCCTCCTCTCCCATGGGAT 59.350 55.000 33.89 0.00 44.24 3.85
4551 8439 4.272018 CAGTGGCTCATATTGCTAGTTCAC 59.728 45.833 0.00 0.00 0.00 3.18
4584 8472 2.042843 CGCTAGGTGACTCCCCCT 60.043 66.667 0.00 0.00 43.67 4.79
4604 8492 5.398809 CCCCTCCTCTCATCATTTCTCAAAT 60.399 44.000 0.00 0.00 0.00 2.32
4607 8495 6.225981 TCCTCTCATCATTTCTCAAATCGA 57.774 37.500 0.00 0.00 0.00 3.59
4609 8497 7.105588 TCCTCTCATCATTTCTCAAATCGAAA 58.894 34.615 0.00 0.00 35.13 3.46
4612 8500 7.968246 TCTCATCATTTCTCAAATCGAAAGTC 58.032 34.615 0.00 0.00 34.25 3.01
4643 8536 4.018597 AGCTTGGATCCAGATGTTTTCTCT 60.019 41.667 15.53 0.00 29.93 3.10
4658 8551 5.180117 TGTTTTCTCTAGCTCAATCAAGTGC 59.820 40.000 0.00 0.00 0.00 4.40
4685 8578 0.704664 GGGTGAGGGGGAATGAGTTT 59.295 55.000 0.00 0.00 0.00 2.66
4706 8599 7.414540 GAGTTTACTCACCAGATTTGGCAATAG 60.415 40.741 0.00 0.00 42.42 1.73
4714 8607 4.285292 CAGATTTGGCAATAGCGATGTTC 58.715 43.478 0.00 0.00 43.41 3.18
4716 8609 1.013596 TTGGCAATAGCGATGTTCCG 58.986 50.000 0.00 0.00 43.41 4.30
4784 8677 1.602668 CCAAATGTTGACGGTGCAAGG 60.603 52.381 0.00 0.00 0.00 3.61
4800 8693 3.243704 TGCAAGGTTAGTGATTTTGCACC 60.244 43.478 6.14 0.00 46.31 5.01
4805 8698 5.842907 AGGTTAGTGATTTTGCACCTTTTC 58.157 37.500 0.00 0.00 39.59 2.29
4817 8710 0.178975 ACCTTTTCCGATGTTGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
4819 8712 2.291282 ACCTTTTCCGATGTTGCCCATA 60.291 45.455 0.00 0.00 32.56 2.74
4835 8728 5.798132 TGCCCATATACATTTTGTTGCAAA 58.202 33.333 0.00 0.00 0.00 3.68
4879 8772 8.711457 GTGATATTGCTACAAATGTTTGCTTTT 58.289 29.630 5.44 0.00 41.79 2.27
4880 8773 8.924691 TGATATTGCTACAAATGTTTGCTTTTC 58.075 29.630 5.44 5.97 41.79 2.29
4881 8774 8.830201 ATATTGCTACAAATGTTTGCTTTTCA 57.170 26.923 5.44 0.00 41.79 2.69
4882 8775 5.964887 TGCTACAAATGTTTGCTTTTCAC 57.035 34.783 5.44 0.00 41.79 3.18
4891 8784 5.493133 TGTTTGCTTTTCACGATACAACT 57.507 34.783 0.00 0.00 0.00 3.16
4900 8793 4.702247 TCACGATACAACTGTTTTCACG 57.298 40.909 0.00 0.00 0.00 4.35
4903 8796 3.215244 CGATACAACTGTTTTCACGTGC 58.785 45.455 11.67 0.00 0.00 5.34
4969 8862 2.235402 AGGGATTTTGCTTCAGCCAATG 59.765 45.455 0.00 0.00 41.18 2.82
5021 8914 2.762887 TGCTTGGGTGTGTTTCAAATGA 59.237 40.909 0.00 0.00 0.00 2.57
5028 8921 3.181505 GGTGTGTTTCAAATGACGTGACA 60.182 43.478 0.00 0.00 0.00 3.58
5041 8934 4.062293 TGACGTGACATTCTTTTACCCTG 58.938 43.478 0.00 0.00 0.00 4.45
5064 8957 5.071250 TGTTAGGGTATCGACAGCCATAATT 59.929 40.000 15.38 0.00 38.60 1.40
5089 8982 4.537015 CAAATTTGGTCTCTCAAACGTCC 58.463 43.478 10.49 0.00 39.13 4.79
5113 9006 2.509336 GCATCCGGTCAGTGTCCG 60.509 66.667 20.15 20.15 46.49 4.79
5122 9015 3.982576 GGTCAGTGTCCGAATTTGTTT 57.017 42.857 0.00 0.00 0.00 2.83
5123 9016 4.301637 GGTCAGTGTCCGAATTTGTTTT 57.698 40.909 0.00 0.00 0.00 2.43
5134 9027 5.105716 TCCGAATTTGTTTTGTTTCAGACCA 60.106 36.000 0.00 0.00 0.00 4.02
5145 9038 0.950836 TTCAGACCACCATTTGTGCG 59.049 50.000 0.00 0.00 44.01 5.34
5186 9079 2.727123 ATTATCCGGTTGGCATGTGA 57.273 45.000 0.00 0.00 34.14 3.58
5187 9080 2.727123 TTATCCGGTTGGCATGTGAT 57.273 45.000 0.00 0.00 34.14 3.06
5190 9083 0.964860 TCCGGTTGGCATGTGATTGG 60.965 55.000 0.00 0.00 34.14 3.16
5191 9084 1.250154 CCGGTTGGCATGTGATTGGT 61.250 55.000 0.00 0.00 0.00 3.67
5192 9085 0.109179 CGGTTGGCATGTGATTGGTG 60.109 55.000 0.00 0.00 0.00 4.17
5219 9118 5.523588 AGAGAGAGAGAGAGAGAGAGAAGA 58.476 45.833 0.00 0.00 0.00 2.87
5220 9119 5.960811 AGAGAGAGAGAGAGAGAGAGAAGAA 59.039 44.000 0.00 0.00 0.00 2.52
5221 9120 6.441924 AGAGAGAGAGAGAGAGAGAGAAGAAA 59.558 42.308 0.00 0.00 0.00 2.52
5222 9121 6.648192 AGAGAGAGAGAGAGAGAGAAGAAAG 58.352 44.000 0.00 0.00 0.00 2.62
5223 9122 6.441924 AGAGAGAGAGAGAGAGAGAAGAAAGA 59.558 42.308 0.00 0.00 0.00 2.52
5224 9123 7.020827 AGAGAGAGAGAGAGAGAAGAAAGAA 57.979 40.000 0.00 0.00 0.00 2.52
5225 9124 7.637511 AGAGAGAGAGAGAGAGAAGAAAGAAT 58.362 38.462 0.00 0.00 0.00 2.40
5226 9125 8.772250 AGAGAGAGAGAGAGAGAAGAAAGAATA 58.228 37.037 0.00 0.00 0.00 1.75
5227 9126 9.566432 GAGAGAGAGAGAGAGAAGAAAGAATAT 57.434 37.037 0.00 0.00 0.00 1.28
5267 9166 2.357517 GATGGGCCGCATCCTACG 60.358 66.667 18.50 0.00 0.00 3.51
5281 9180 1.202964 TCCTACGTGGAGAACTGTCCA 60.203 52.381 0.00 0.00 44.82 4.02
5287 9186 1.788229 TGGAGAACTGTCCAGACACA 58.212 50.000 0.40 0.00 41.99 3.72
5292 9191 1.335132 AACTGTCCAGACACACCCGT 61.335 55.000 0.40 0.00 36.21 5.28
5305 9204 1.975680 ACACCCGTACATCCCCATATC 59.024 52.381 0.00 0.00 0.00 1.63
5306 9205 1.278127 CACCCGTACATCCCCATATCC 59.722 57.143 0.00 0.00 0.00 2.59
5307 9206 1.151413 ACCCGTACATCCCCATATCCT 59.849 52.381 0.00 0.00 0.00 3.24
5308 9207 1.831736 CCCGTACATCCCCATATCCTC 59.168 57.143 0.00 0.00 0.00 3.71
5309 9208 1.831736 CCGTACATCCCCATATCCTCC 59.168 57.143 0.00 0.00 0.00 4.30
5310 9209 1.831736 CGTACATCCCCATATCCTCCC 59.168 57.143 0.00 0.00 0.00 4.30
5311 9210 2.197465 GTACATCCCCATATCCTCCCC 58.803 57.143 0.00 0.00 0.00 4.81
5312 9211 0.577916 ACATCCCCATATCCTCCCCA 59.422 55.000 0.00 0.00 0.00 4.96
5313 9212 1.157287 ACATCCCCATATCCTCCCCAT 59.843 52.381 0.00 0.00 0.00 4.00
5314 9213 2.393885 ACATCCCCATATCCTCCCCATA 59.606 50.000 0.00 0.00 0.00 2.74
5315 9214 3.016810 ACATCCCCATATCCTCCCCATAT 59.983 47.826 0.00 0.00 0.00 1.78
5316 9215 4.239933 ACATCCCCATATCCTCCCCATATA 59.760 45.833 0.00 0.00 0.00 0.86
5317 9216 5.101591 ACATCCCCATATCCTCCCCATATAT 60.102 44.000 0.00 0.00 0.00 0.86
5318 9217 4.843156 TCCCCATATCCTCCCCATATATG 58.157 47.826 5.68 5.68 34.68 1.78
5319 9218 4.493402 TCCCCATATCCTCCCCATATATGA 59.507 45.833 14.54 0.00 36.22 2.15
5320 9219 5.041139 TCCCCATATCCTCCCCATATATGAA 60.041 44.000 14.54 0.00 36.22 2.57
5321 9220 5.859536 CCCCATATCCTCCCCATATATGAAT 59.140 44.000 14.54 1.27 36.22 2.57
5322 9221 6.336389 CCCCATATCCTCCCCATATATGAATT 59.664 42.308 14.54 0.00 36.22 2.17
5323 9222 7.236529 CCCATATCCTCCCCATATATGAATTG 58.763 42.308 14.54 0.00 36.22 2.32
5324 9223 7.147069 CCCATATCCTCCCCATATATGAATTGT 60.147 40.741 14.54 0.00 36.22 2.71
5325 9224 8.284435 CCATATCCTCCCCATATATGAATTGTT 58.716 37.037 14.54 0.00 36.22 2.83
5326 9225 9.705103 CATATCCTCCCCATATATGAATTGTTT 57.295 33.333 14.54 0.00 36.22 2.83
5329 9228 9.705103 ATCCTCCCCATATATGAATTGTTTATG 57.295 33.333 14.54 0.00 0.00 1.90
5330 9229 8.115384 TCCTCCCCATATATGAATTGTTTATGG 58.885 37.037 14.54 2.71 39.23 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.321298 GCCCTAAACTGTCGGCTTGA 60.321 55.000 0.00 0.00 38.41 3.02
3 4 2.171635 GCCCTAAACTGTCGGCTTG 58.828 57.895 0.00 0.00 38.41 4.01
4 5 4.716003 GCCCTAAACTGTCGGCTT 57.284 55.556 0.00 0.00 38.41 4.35
5 6 3.807368 AGCCCTAAACTGTCGGCT 58.193 55.556 5.22 5.22 46.96 5.52
6 7 0.535797 ACTAGCCCTAAACTGTCGGC 59.464 55.000 0.00 0.00 41.96 5.54
7 8 2.496470 AGAACTAGCCCTAAACTGTCGG 59.504 50.000 0.00 0.00 0.00 4.79
8 9 3.870633 AGAACTAGCCCTAAACTGTCG 57.129 47.619 0.00 0.00 0.00 4.35
9 10 5.181433 CCAAAAGAACTAGCCCTAAACTGTC 59.819 44.000 0.00 0.00 0.00 3.51
10 11 5.070685 CCAAAAGAACTAGCCCTAAACTGT 58.929 41.667 0.00 0.00 0.00 3.55
11 12 4.459337 CCCAAAAGAACTAGCCCTAAACTG 59.541 45.833 0.00 0.00 0.00 3.16
12 13 4.663334 CCCAAAAGAACTAGCCCTAAACT 58.337 43.478 0.00 0.00 0.00 2.66
13 14 3.192844 GCCCAAAAGAACTAGCCCTAAAC 59.807 47.826 0.00 0.00 0.00 2.01
14 15 3.427573 GCCCAAAAGAACTAGCCCTAAA 58.572 45.455 0.00 0.00 0.00 1.85
15 16 2.617021 CGCCCAAAAGAACTAGCCCTAA 60.617 50.000 0.00 0.00 0.00 2.69
16 17 1.065709 CGCCCAAAAGAACTAGCCCTA 60.066 52.381 0.00 0.00 0.00 3.53
17 18 0.322546 CGCCCAAAAGAACTAGCCCT 60.323 55.000 0.00 0.00 0.00 5.19
18 19 1.313091 CCGCCCAAAAGAACTAGCCC 61.313 60.000 0.00 0.00 0.00 5.19
19 20 1.934220 GCCGCCCAAAAGAACTAGCC 61.934 60.000 0.00 0.00 0.00 3.93
20 21 0.960861 AGCCGCCCAAAAGAACTAGC 60.961 55.000 0.00 0.00 0.00 3.42
21 22 1.534729 AAGCCGCCCAAAAGAACTAG 58.465 50.000 0.00 0.00 0.00 2.57
22 23 2.863132 TAAGCCGCCCAAAAGAACTA 57.137 45.000 0.00 0.00 0.00 2.24
23 24 1.989706 TTAAGCCGCCCAAAAGAACT 58.010 45.000 0.00 0.00 0.00 3.01
24 25 2.804697 TTTAAGCCGCCCAAAAGAAC 57.195 45.000 0.00 0.00 0.00 3.01
25 26 3.821421 TTTTTAAGCCGCCCAAAAGAA 57.179 38.095 0.00 0.00 0.00 2.52
42 43 4.217767 GCCGGGAAGAGACAACTTATTTTT 59.782 41.667 2.18 0.00 0.00 1.94
43 44 3.756963 GCCGGGAAGAGACAACTTATTTT 59.243 43.478 2.18 0.00 0.00 1.82
44 45 3.009143 AGCCGGGAAGAGACAACTTATTT 59.991 43.478 2.18 0.00 0.00 1.40
45 46 2.572104 AGCCGGGAAGAGACAACTTATT 59.428 45.455 2.18 0.00 0.00 1.40
46 47 2.188817 AGCCGGGAAGAGACAACTTAT 58.811 47.619 2.18 0.00 0.00 1.73
47 48 1.640917 AGCCGGGAAGAGACAACTTA 58.359 50.000 2.18 0.00 0.00 2.24
48 49 0.765510 AAGCCGGGAAGAGACAACTT 59.234 50.000 2.18 0.00 0.00 2.66
49 50 1.640917 TAAGCCGGGAAGAGACAACT 58.359 50.000 2.18 0.00 0.00 3.16
50 51 2.467566 TTAAGCCGGGAAGAGACAAC 57.532 50.000 2.18 0.00 0.00 3.32
51 52 3.495434 TTTTAAGCCGGGAAGAGACAA 57.505 42.857 2.18 0.00 0.00 3.18
52 53 3.495434 TTTTTAAGCCGGGAAGAGACA 57.505 42.857 2.18 0.00 0.00 3.41
71 72 9.890915 TCATAAAATATTAGGGGTGGCTTATTT 57.109 29.630 0.00 0.00 0.00 1.40
72 73 9.533831 CTCATAAAATATTAGGGGTGGCTTATT 57.466 33.333 0.00 0.00 0.00 1.40
73 74 8.900802 TCTCATAAAATATTAGGGGTGGCTTAT 58.099 33.333 0.00 0.00 0.00 1.73
74 75 8.161425 GTCTCATAAAATATTAGGGGTGGCTTA 58.839 37.037 0.00 0.00 0.00 3.09
75 76 7.004691 GTCTCATAAAATATTAGGGGTGGCTT 58.995 38.462 0.00 0.00 0.00 4.35
76 77 6.332901 AGTCTCATAAAATATTAGGGGTGGCT 59.667 38.462 0.00 0.00 0.00 4.75
77 78 6.543735 AGTCTCATAAAATATTAGGGGTGGC 58.456 40.000 0.00 0.00 0.00 5.01
78 79 8.440771 AGAAGTCTCATAAAATATTAGGGGTGG 58.559 37.037 0.00 0.00 0.00 4.61
96 97 9.865484 GCACGGAATAAATAATTTAGAAGTCTC 57.135 33.333 0.00 0.00 0.00 3.36
97 98 9.614792 AGCACGGAATAAATAATTTAGAAGTCT 57.385 29.630 0.00 0.00 0.00 3.24
108 109 9.880157 ACTTCTAAACTAGCACGGAATAAATAA 57.120 29.630 0.00 0.00 0.00 1.40
109 110 9.525409 GACTTCTAAACTAGCACGGAATAAATA 57.475 33.333 0.00 0.00 0.00 1.40
110 111 7.494952 GGACTTCTAAACTAGCACGGAATAAAT 59.505 37.037 0.00 0.00 0.00 1.40
111 112 6.815142 GGACTTCTAAACTAGCACGGAATAAA 59.185 38.462 0.00 0.00 0.00 1.40
112 113 6.154021 AGGACTTCTAAACTAGCACGGAATAA 59.846 38.462 0.00 0.00 0.00 1.40
113 114 5.655532 AGGACTTCTAAACTAGCACGGAATA 59.344 40.000 0.00 0.00 0.00 1.75
114 115 4.466726 AGGACTTCTAAACTAGCACGGAAT 59.533 41.667 0.00 0.00 0.00 3.01
115 116 3.830755 AGGACTTCTAAACTAGCACGGAA 59.169 43.478 0.00 0.00 0.00 4.30
116 117 3.428532 AGGACTTCTAAACTAGCACGGA 58.571 45.455 0.00 0.00 0.00 4.69
117 118 3.870633 AGGACTTCTAAACTAGCACGG 57.129 47.619 0.00 0.00 0.00 4.94
118 119 6.561614 TCATTAGGACTTCTAAACTAGCACG 58.438 40.000 0.00 0.00 40.89 5.34
119 120 8.950208 ATTCATTAGGACTTCTAAACTAGCAC 57.050 34.615 0.00 0.00 40.89 4.40
127 128 8.643324 GCCTCTCTTATTCATTAGGACTTCTAA 58.357 37.037 0.00 0.00 41.66 2.10
128 129 7.040340 CGCCTCTCTTATTCATTAGGACTTCTA 60.040 40.741 0.00 0.00 0.00 2.10
129 130 6.239176 CGCCTCTCTTATTCATTAGGACTTCT 60.239 42.308 0.00 0.00 0.00 2.85
130 131 5.923684 CGCCTCTCTTATTCATTAGGACTTC 59.076 44.000 0.00 0.00 0.00 3.01
131 132 5.221541 CCGCCTCTCTTATTCATTAGGACTT 60.222 44.000 0.00 0.00 0.00 3.01
132 133 4.282195 CCGCCTCTCTTATTCATTAGGACT 59.718 45.833 0.00 0.00 0.00 3.85
133 134 4.561105 CCGCCTCTCTTATTCATTAGGAC 58.439 47.826 0.00 0.00 0.00 3.85
134 135 3.006967 GCCGCCTCTCTTATTCATTAGGA 59.993 47.826 0.00 0.00 0.00 2.94
135 136 3.007398 AGCCGCCTCTCTTATTCATTAGG 59.993 47.826 0.00 0.00 0.00 2.69
136 137 4.264460 AGCCGCCTCTCTTATTCATTAG 57.736 45.455 0.00 0.00 0.00 1.73
137 138 4.689612 AAGCCGCCTCTCTTATTCATTA 57.310 40.909 0.00 0.00 0.00 1.90
138 139 3.567478 AAGCCGCCTCTCTTATTCATT 57.433 42.857 0.00 0.00 0.00 2.57
139 140 4.284490 TCATAAGCCGCCTCTCTTATTCAT 59.716 41.667 0.00 0.00 34.33 2.57
140 141 3.641436 TCATAAGCCGCCTCTCTTATTCA 59.359 43.478 0.00 0.00 34.33 2.57
141 142 4.258702 TCATAAGCCGCCTCTCTTATTC 57.741 45.455 0.00 0.00 34.33 1.75
142 143 4.689612 TTCATAAGCCGCCTCTCTTATT 57.310 40.909 0.00 0.00 34.33 1.40
143 144 4.689612 TTTCATAAGCCGCCTCTCTTAT 57.310 40.909 0.00 0.00 36.30 1.73
144 145 4.481368 TTTTCATAAGCCGCCTCTCTTA 57.519 40.909 0.00 0.00 0.00 2.10
145 146 3.350219 TTTTCATAAGCCGCCTCTCTT 57.650 42.857 0.00 0.00 0.00 2.85
146 147 3.350219 TTTTTCATAAGCCGCCTCTCT 57.650 42.857 0.00 0.00 0.00 3.10
163 164 3.075148 GCCGTCTTCTCCTTAGCTTTTT 58.925 45.455 0.00 0.00 0.00 1.94
164 165 2.303311 AGCCGTCTTCTCCTTAGCTTTT 59.697 45.455 0.00 0.00 0.00 2.27
165 166 1.903183 AGCCGTCTTCTCCTTAGCTTT 59.097 47.619 0.00 0.00 0.00 3.51
166 167 1.562783 AGCCGTCTTCTCCTTAGCTT 58.437 50.000 0.00 0.00 0.00 3.74
167 168 1.562783 AAGCCGTCTTCTCCTTAGCT 58.437 50.000 0.00 0.00 0.00 3.32
168 169 3.737032 ATAAGCCGTCTTCTCCTTAGC 57.263 47.619 0.00 0.00 33.85 3.09
169 170 6.986904 AAAAATAAGCCGTCTTCTCCTTAG 57.013 37.500 0.00 0.00 33.85 2.18
189 190 7.412853 ACCAGTTCTTTTGGTAGCTTAAAAA 57.587 32.000 0.00 0.00 46.80 1.94
204 205 8.577296 GCCTTTTCTTTCTAATTACCAGTTCTT 58.423 33.333 0.00 0.00 0.00 2.52
205 206 7.094762 CGCCTTTTCTTTCTAATTACCAGTTCT 60.095 37.037 0.00 0.00 0.00 3.01
206 207 7.021790 CGCCTTTTCTTTCTAATTACCAGTTC 58.978 38.462 0.00 0.00 0.00 3.01
207 208 6.713450 TCGCCTTTTCTTTCTAATTACCAGTT 59.287 34.615 0.00 0.00 0.00 3.16
208 209 6.235664 TCGCCTTTTCTTTCTAATTACCAGT 58.764 36.000 0.00 0.00 0.00 4.00
209 210 6.675728 GCTCGCCTTTTCTTTCTAATTACCAG 60.676 42.308 0.00 0.00 0.00 4.00
210 211 5.123344 GCTCGCCTTTTCTTTCTAATTACCA 59.877 40.000 0.00 0.00 0.00 3.25
211 212 5.354513 AGCTCGCCTTTTCTTTCTAATTACC 59.645 40.000 0.00 0.00 0.00 2.85
212 213 6.424176 AGCTCGCCTTTTCTTTCTAATTAC 57.576 37.500 0.00 0.00 0.00 1.89
213 214 6.093633 GGAAGCTCGCCTTTTCTTTCTAATTA 59.906 38.462 0.00 0.00 32.78 1.40
214 215 5.106118 GGAAGCTCGCCTTTTCTTTCTAATT 60.106 40.000 0.00 0.00 32.78 1.40
215 216 4.396478 GGAAGCTCGCCTTTTCTTTCTAAT 59.604 41.667 0.00 0.00 32.78 1.73
219 220 2.155279 AGGAAGCTCGCCTTTTCTTTC 58.845 47.619 2.36 0.00 32.78 2.62
228 229 2.094762 TCTTTGTAAGGAAGCTCGCC 57.905 50.000 0.00 0.00 0.00 5.54
230 231 9.065871 CAATATTTTTCTTTGTAAGGAAGCTCG 57.934 33.333 0.00 0.00 0.00 5.03
268 270 8.036575 CCTCATTGTGTCAAATTCATGGTTATT 58.963 33.333 0.00 0.00 0.00 1.40
309 311 6.040616 AGCTTACGTGGCACTCTTATAATAGT 59.959 38.462 16.72 4.47 0.00 2.12
315 317 2.496070 TCAGCTTACGTGGCACTCTTAT 59.504 45.455 16.72 0.00 0.00 1.73
324 326 4.327357 CACTTCTGTATTCAGCTTACGTGG 59.673 45.833 0.00 0.00 41.10 4.94
335 337 4.707448 TCTGTCTCCTCCACTTCTGTATTC 59.293 45.833 0.00 0.00 0.00 1.75
527 663 4.500887 GCTTTCAGGGCACACGTAGATATA 60.501 45.833 0.00 0.00 0.00 0.86
535 671 0.602638 TACAGCTTTCAGGGCACACG 60.603 55.000 0.00 0.00 0.00 4.49
556 692 9.884636 AACGATAATTAATATGGATCGGATGAA 57.115 29.630 18.39 0.00 42.78 2.57
649 786 8.892723 TCGATTCATATTAGTTGTTGCTGAATT 58.107 29.630 0.00 0.00 33.36 2.17
653 790 7.128331 CCTTCGATTCATATTAGTTGTTGCTG 58.872 38.462 0.00 0.00 0.00 4.41
654 791 6.260936 CCCTTCGATTCATATTAGTTGTTGCT 59.739 38.462 0.00 0.00 0.00 3.91
655 792 6.260050 TCCCTTCGATTCATATTAGTTGTTGC 59.740 38.462 0.00 0.00 0.00 4.17
656 793 7.041780 CCTCCCTTCGATTCATATTAGTTGTTG 60.042 40.741 0.00 0.00 0.00 3.33
657 794 6.992715 CCTCCCTTCGATTCATATTAGTTGTT 59.007 38.462 0.00 0.00 0.00 2.83
659 796 6.759272 TCCTCCCTTCGATTCATATTAGTTG 58.241 40.000 0.00 0.00 0.00 3.16
665 802 9.813826 AAAAATATTCCTCCCTTCGATTCATAT 57.186 29.630 0.00 0.00 0.00 1.78
695 832 7.098845 ACTATTCCTCCCTTTACCTCAAAAA 57.901 36.000 0.00 0.00 0.00 1.94
696 833 6.713731 ACTATTCCTCCCTTTACCTCAAAA 57.286 37.500 0.00 0.00 0.00 2.44
697 834 6.713731 AACTATTCCTCCCTTTACCTCAAA 57.286 37.500 0.00 0.00 0.00 2.69
698 835 6.713731 AAACTATTCCTCCCTTTACCTCAA 57.286 37.500 0.00 0.00 0.00 3.02
699 836 6.273730 TCAAAACTATTCCTCCCTTTACCTCA 59.726 38.462 0.00 0.00 0.00 3.86
700 837 6.598457 GTCAAAACTATTCCTCCCTTTACCTC 59.402 42.308 0.00 0.00 0.00 3.85
701 838 6.482524 GTCAAAACTATTCCTCCCTTTACCT 58.517 40.000 0.00 0.00 0.00 3.08
702 839 5.353400 CGTCAAAACTATTCCTCCCTTTACC 59.647 44.000 0.00 0.00 0.00 2.85
703 840 5.936372 ACGTCAAAACTATTCCTCCCTTTAC 59.064 40.000 0.00 0.00 0.00 2.01
704 841 5.935789 CACGTCAAAACTATTCCTCCCTTTA 59.064 40.000 0.00 0.00 0.00 1.85
705 842 4.760204 CACGTCAAAACTATTCCTCCCTTT 59.240 41.667 0.00 0.00 0.00 3.11
713 850 4.091424 GCATCTGCACGTCAAAACTATTC 58.909 43.478 0.00 0.00 41.59 1.75
715 852 2.094258 CGCATCTGCACGTCAAAACTAT 59.906 45.455 2.72 0.00 42.21 2.12
754 891 2.203001 CACACGTGGCACTCACCA 60.203 61.111 21.57 0.00 43.23 4.17
784 921 1.077716 AAAATCGGCCCCCTTCTCG 60.078 57.895 0.00 0.00 0.00 4.04
811 950 3.774528 CCAGTAGCTGGCGCCTGA 61.775 66.667 34.52 13.95 45.13 3.86
829 968 1.361668 GCATGTTCATCCGACAGCGT 61.362 55.000 0.00 0.00 35.23 5.07
893 1032 1.233019 GGATGCATCCAGATTCGGTG 58.767 55.000 35.93 0.00 46.38 4.94
908 1047 4.838152 CGCACCTGGACGGGGATG 62.838 72.222 0.00 0.00 39.13 3.51
1123 1262 8.319146 CCTAGAAGTAGCTAGCTAGATAACTCT 58.681 40.741 24.78 24.36 37.20 3.24
1160 1299 1.386525 CCAATCCGGCCTGAACCATG 61.387 60.000 0.00 0.00 0.00 3.66
1315 1454 9.213777 TCCAGAAAATGAATAGGAGTAGTACAT 57.786 33.333 2.52 0.00 0.00 2.29
1316 1455 8.475639 GTCCAGAAAATGAATAGGAGTAGTACA 58.524 37.037 2.52 0.00 0.00 2.90
1319 1458 6.380274 TCGTCCAGAAAATGAATAGGAGTAGT 59.620 38.462 0.00 0.00 0.00 2.73
1320 1459 6.806751 TCGTCCAGAAAATGAATAGGAGTAG 58.193 40.000 0.00 0.00 0.00 2.57
1347 1510 1.217057 AGGCCACCATTCACATCCCT 61.217 55.000 5.01 0.00 0.00 4.20
1371 1534 2.494073 AGATAGATTCGATCCTTCCGGC 59.506 50.000 0.00 0.00 0.00 6.13
1409 1572 5.954752 TCAATCCCATTACAGCCAATTAACA 59.045 36.000 0.00 0.00 0.00 2.41
1410 1573 6.463995 TCAATCCCATTACAGCCAATTAAC 57.536 37.500 0.00 0.00 0.00 2.01
1467 1630 6.164176 AGTAGAGGTTGTACTATGTTGCAAC 58.836 40.000 22.83 22.83 40.08 4.17
1468 1631 6.354794 AGTAGAGGTTGTACTATGTTGCAA 57.645 37.500 0.00 0.00 0.00 4.08
1469 1632 5.995565 AGTAGAGGTTGTACTATGTTGCA 57.004 39.130 0.00 0.00 0.00 4.08
1470 1633 5.811100 GGAAGTAGAGGTTGTACTATGTTGC 59.189 44.000 0.00 0.00 30.26 4.17
1471 1634 7.171630 AGGAAGTAGAGGTTGTACTATGTTG 57.828 40.000 0.00 0.00 30.26 3.33
1472 1635 8.890410 TTAGGAAGTAGAGGTTGTACTATGTT 57.110 34.615 0.00 0.00 30.26 2.71
1473 1636 8.890410 TTTAGGAAGTAGAGGTTGTACTATGT 57.110 34.615 0.00 0.00 30.26 2.29
1482 1645 9.418839 ACGTCTTATATTTAGGAAGTAGAGGTT 57.581 33.333 0.00 0.00 27.31 3.50
1505 1668 8.544597 GCAATTTAAATTGAACTACCAAAACGT 58.455 29.630 34.51 0.00 46.72 3.99
1506 1669 8.760569 AGCAATTTAAATTGAACTACCAAAACG 58.239 29.630 34.51 11.47 46.72 3.60
1509 1672 9.699703 GGTAGCAATTTAAATTGAACTACCAAA 57.300 29.630 36.84 18.67 46.98 3.28
1543 1706 9.283420 CGTTTTGGCAATTTAAATTGAACTTTT 57.717 25.926 34.51 3.14 46.72 2.27
1544 1707 8.454894 ACGTTTTGGCAATTTAAATTGAACTTT 58.545 25.926 34.51 19.28 46.72 2.66
1545 1708 7.980062 ACGTTTTGGCAATTTAAATTGAACTT 58.020 26.923 34.51 22.55 46.72 2.66
1546 1709 7.546778 ACGTTTTGGCAATTTAAATTGAACT 57.453 28.000 34.51 19.24 46.72 3.01
1547 1710 8.608102 AAACGTTTTGGCAATTTAAATTGAAC 57.392 26.923 34.51 27.37 46.72 3.18
1581 1744 4.876107 CCGTACTACTTCTACCTCCGTTTA 59.124 45.833 0.00 0.00 0.00 2.01
1585 1748 3.129871 CTCCGTACTACTTCTACCTCCG 58.870 54.545 0.00 0.00 0.00 4.63
1586 1749 4.149511 ACTCCGTACTACTTCTACCTCC 57.850 50.000 0.00 0.00 0.00 4.30
1587 1750 5.912892 ACTACTCCGTACTACTTCTACCTC 58.087 45.833 0.00 0.00 0.00 3.85
1588 1751 5.948742 ACTACTCCGTACTACTTCTACCT 57.051 43.478 0.00 0.00 0.00 3.08
1589 1752 5.295540 CCAACTACTCCGTACTACTTCTACC 59.704 48.000 0.00 0.00 0.00 3.18
1590 1753 5.877564 ACCAACTACTCCGTACTACTTCTAC 59.122 44.000 0.00 0.00 0.00 2.59
1591 1754 6.054860 ACCAACTACTCCGTACTACTTCTA 57.945 41.667 0.00 0.00 0.00 2.10
1592 1755 4.916183 ACCAACTACTCCGTACTACTTCT 58.084 43.478 0.00 0.00 0.00 2.85
1593 1756 5.635417 AACCAACTACTCCGTACTACTTC 57.365 43.478 0.00 0.00 0.00 3.01
1594 1757 6.476378 TCTAACCAACTACTCCGTACTACTT 58.524 40.000 0.00 0.00 0.00 2.24
1595 1758 6.054860 TCTAACCAACTACTCCGTACTACT 57.945 41.667 0.00 0.00 0.00 2.57
1596 1759 6.934048 ATCTAACCAACTACTCCGTACTAC 57.066 41.667 0.00 0.00 0.00 2.73
1597 1760 7.611467 TGAAATCTAACCAACTACTCCGTACTA 59.389 37.037 0.00 0.00 0.00 1.82
1598 1761 6.435277 TGAAATCTAACCAACTACTCCGTACT 59.565 38.462 0.00 0.00 0.00 2.73
1599 1762 6.624423 TGAAATCTAACCAACTACTCCGTAC 58.376 40.000 0.00 0.00 0.00 3.67
1600 1763 6.839124 TGAAATCTAACCAACTACTCCGTA 57.161 37.500 0.00 0.00 0.00 4.02
1601 1764 5.733620 TGAAATCTAACCAACTACTCCGT 57.266 39.130 0.00 0.00 0.00 4.69
1646 1809 3.066190 CAGCCCACCACCAGCATG 61.066 66.667 0.00 0.00 0.00 4.06
1650 1813 4.666253 CCACCAGCCCACCACCAG 62.666 72.222 0.00 0.00 0.00 4.00
1748 1957 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1749 1958 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1750 1959 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1751 1960 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1752 1961 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1753 1962 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1754 1963 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1755 1964 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1756 1965 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1757 1966 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1758 1967 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1767 1976 8.989980 GCTAAAGTTAGTACAAAGTTGAGTCAT 58.010 33.333 0.00 0.00 33.32 3.06
1768 1977 7.982919 TGCTAAAGTTAGTACAAAGTTGAGTCA 59.017 33.333 0.00 0.00 33.32 3.41
1769 1978 8.361592 TGCTAAAGTTAGTACAAAGTTGAGTC 57.638 34.615 0.00 0.00 33.32 3.36
1770 1979 8.904099 ATGCTAAAGTTAGTACAAAGTTGAGT 57.096 30.769 0.00 0.00 33.32 3.41
1779 1988 9.991906 ACTCAACTTTATGCTAAAGTTAGTACA 57.008 29.630 22.43 11.10 45.57 2.90
1782 1991 9.726438 ATGACTCAACTTTATGCTAAAGTTAGT 57.274 29.630 22.43 22.32 45.57 2.24
1784 1993 9.944376 AGATGACTCAACTTTATGCTAAAGTTA 57.056 29.630 22.43 13.60 45.57 2.24
1791 2000 8.680903 CCAAAATAGATGACTCAACTTTATGCT 58.319 33.333 0.00 0.00 0.00 3.79
1792 2001 8.677300 TCCAAAATAGATGACTCAACTTTATGC 58.323 33.333 0.00 0.00 0.00 3.14
1795 2004 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
1796 2005 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1797 2006 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1798 2007 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1799 2008 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1800 2009 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1801 2010 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1802 2011 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1803 2012 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1804 2013 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1805 2014 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1806 2015 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1807 2016 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1808 2017 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1809 2018 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1810 2019 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
1811 2020 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
1812 2021 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
1813 2022 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
1814 2023 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
1815 2024 1.272816 TGATGTACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
1816 2025 1.136500 GTGATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
1817 2026 1.822990 TGTGATGTACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
1818 2027 1.933021 TGTGATGTACTCCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
1819 2028 1.825474 CTTGTGATGTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
1820 2029 1.137086 CCTTGTGATGTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
1821 2030 2.093447 CACCTTGTGATGTACTCCCTCC 60.093 54.545 0.00 0.00 35.23 4.30
1822 2031 2.093447 CCACCTTGTGATGTACTCCCTC 60.093 54.545 0.00 0.00 35.23 4.30
1823 2032 1.909302 CCACCTTGTGATGTACTCCCT 59.091 52.381 0.00 0.00 35.23 4.20
1824 2033 1.906574 TCCACCTTGTGATGTACTCCC 59.093 52.381 0.00 0.00 35.23 4.30
1825 2034 2.567615 ACTCCACCTTGTGATGTACTCC 59.432 50.000 0.00 0.00 35.23 3.85
1826 2035 3.589988 CACTCCACCTTGTGATGTACTC 58.410 50.000 0.00 0.00 35.23 2.59
1827 2036 2.303022 CCACTCCACCTTGTGATGTACT 59.697 50.000 0.00 0.00 35.23 2.73
1828 2037 2.699954 CCACTCCACCTTGTGATGTAC 58.300 52.381 0.00 0.00 35.23 2.90
1829 2038 1.003118 GCCACTCCACCTTGTGATGTA 59.997 52.381 0.00 0.00 35.23 2.29
1830 2039 0.250901 GCCACTCCACCTTGTGATGT 60.251 55.000 0.00 0.00 35.23 3.06
1831 2040 0.250858 TGCCACTCCACCTTGTGATG 60.251 55.000 0.00 0.00 35.23 3.07
1885 2171 8.529102 GCCTTTTCGTACAAAAACTAAAAAGAG 58.471 33.333 0.00 0.00 34.75 2.85
2020 2430 1.487976 ACGGATGCCAGAGATGACAAT 59.512 47.619 0.00 0.00 0.00 2.71
2045 2456 2.949644 AGCTTAAACAAGTTTGCTCCGT 59.050 40.909 8.37 0.00 29.35 4.69
2064 2475 5.105752 CACTACTTCTACAAGACCATGAGC 58.894 45.833 0.00 0.00 33.34 4.26
2071 2482 3.955650 TGGCCACTACTTCTACAAGAC 57.044 47.619 0.00 0.00 33.34 3.01
2122 2533 1.202580 GCTCTGTAGATCATGGCCGTT 60.203 52.381 0.00 0.00 0.00 4.44
2147 2558 1.468914 GTTTTCCTCTCCGATGCAACC 59.531 52.381 0.00 0.00 0.00 3.77
2149 2560 2.151202 GTGTTTTCCTCTCCGATGCAA 58.849 47.619 0.00 0.00 0.00 4.08
2154 2565 1.618837 CTCCAGTGTTTTCCTCTCCGA 59.381 52.381 0.00 0.00 0.00 4.55
2159 2570 1.611936 GCCCTCTCCAGTGTTTTCCTC 60.612 57.143 0.00 0.00 0.00 3.71
2191 2602 2.485814 GAGATTTGTGTCTGGCAGGAAC 59.514 50.000 15.73 13.48 0.00 3.62
2223 2648 0.250338 GACCAGTCTCGGCCTTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
2249 2674 0.904865 ATCTCCAGTTCTGACCGGCA 60.905 55.000 0.00 0.00 0.00 5.69
2298 2723 1.193203 GTGATGCTACAATGCGGATCG 59.807 52.381 0.00 0.00 35.36 3.69
2314 2739 3.624777 CCAATAGGTTTGCCTCAGTGAT 58.375 45.455 0.00 0.00 45.64 3.06
2346 2771 5.412904 GTGAATCTAGTTCTTCAGGTTTGGG 59.587 44.000 5.71 0.00 37.72 4.12
2350 2775 5.992217 GTGTGTGAATCTAGTTCTTCAGGTT 59.008 40.000 5.71 0.00 37.72 3.50
2354 2779 5.511373 CCTGGTGTGTGAATCTAGTTCTTCA 60.511 44.000 0.00 0.00 37.72 3.02
2368 2793 3.976701 GATCCGCCCCTGGTGTGTG 62.977 68.421 0.00 0.00 0.00 3.82
2369 2794 3.717294 GATCCGCCCCTGGTGTGT 61.717 66.667 0.00 0.00 0.00 3.72
2370 2795 4.489771 GGATCCGCCCCTGGTGTG 62.490 72.222 0.00 0.00 0.00 3.82
2372 2797 4.181010 CTGGATCCGCCCCTGGTG 62.181 72.222 7.39 0.00 34.97 4.17
2383 2812 5.759273 CACTGGATCATTTTCTCTCTGGATC 59.241 44.000 0.00 0.00 0.00 3.36
2401 2830 3.706086 TGATTCTATGCTAGCACACTGGA 59.294 43.478 22.07 9.30 0.00 3.86
2404 2833 4.743057 TGTGATTCTATGCTAGCACACT 57.257 40.909 22.07 7.11 32.01 3.55
2434 2863 6.389869 ACACCCCCATCTTTATCTTTAGATGA 59.610 38.462 12.36 0.00 46.86 2.92
2452 2881 6.126409 TGATTTTATAGAATGTGACACCCCC 58.874 40.000 2.45 0.00 0.00 5.40
2453 2882 7.502226 TCATGATTTTATAGAATGTGACACCCC 59.498 37.037 2.45 0.00 0.00 4.95
2485 2914 3.031013 TCGGGAGTGCTTCTTCATATCA 58.969 45.455 0.00 0.00 0.00 2.15
2486 2915 3.735237 TCGGGAGTGCTTCTTCATATC 57.265 47.619 0.00 0.00 0.00 1.63
2490 2919 1.872237 CGTTTCGGGAGTGCTTCTTCA 60.872 52.381 0.00 0.00 0.00 3.02
2501 2930 3.755628 CTCGCCCTCGTTTCGGGA 61.756 66.667 0.00 0.00 44.90 5.14
2556 2985 0.911525 CCAGTCAGGGGTGGTGAGAT 60.912 60.000 0.00 0.00 0.00 2.75
2569 2998 5.367945 AAGTTAGGTTTTGTCTCCAGTCA 57.632 39.130 0.00 0.00 0.00 3.41
2579 3008 9.170734 GTAGGGTTAGGAATAAGTTAGGTTTTG 57.829 37.037 0.00 0.00 0.00 2.44
2679 3109 1.374252 CTTTCCCGGTGAGACCACG 60.374 63.158 0.00 0.00 44.09 4.94
2704 3134 2.797278 CCAGAGGCGGCGGACTATT 61.797 63.158 9.78 0.00 0.00 1.73
2718 3148 2.530701 GTTCTCTTCTCCTCCACCAGA 58.469 52.381 0.00 0.00 0.00 3.86
2761 3210 1.209504 TCTTAAGGATCAACGGGCAGG 59.790 52.381 1.85 0.00 0.00 4.85
2780 3229 6.577427 GTGGTCGTTTAGAAATGATGTTGTTC 59.423 38.462 0.48 0.00 36.42 3.18
2805 3254 1.766494 TGCTCTATGTTTGGCCCATG 58.234 50.000 0.00 0.00 0.00 3.66
2808 3257 1.410153 CCATTGCTCTATGTTTGGCCC 59.590 52.381 0.00 0.00 0.00 5.80
2809 3258 1.410153 CCCATTGCTCTATGTTTGGCC 59.590 52.381 0.00 0.00 0.00 5.36
2810 3259 1.202452 GCCCATTGCTCTATGTTTGGC 60.202 52.381 0.00 0.00 36.87 4.52
2822 3271 2.462503 CAATGCTTGTGCCCATTGC 58.537 52.632 0.00 0.00 41.02 3.56
2829 3278 4.325472 GCAGATTTAAGACAATGCTTGTGC 59.675 41.667 6.31 0.00 45.52 4.57
2835 3284 6.966632 TCATAAACGCAGATTTAAGACAATGC 59.033 34.615 0.00 0.00 0.00 3.56
2861 3310 6.772605 TGTATATACGAGGACTGGCTACTAA 58.227 40.000 8.33 0.00 0.00 2.24
2888 3354 2.595754 GGATCCATTGCTCCGCCC 60.596 66.667 6.95 0.00 0.00 6.13
2936 3402 5.108385 ACATCTCTTTTGCCGTACTTTTG 57.892 39.130 0.00 0.00 0.00 2.44
2938 3404 3.751698 GGACATCTCTTTTGCCGTACTTT 59.248 43.478 0.00 0.00 0.00 2.66
2964 3684 7.063426 TGACGAAAAGTGATCACTAGCTAAATG 59.937 37.037 28.10 14.48 41.58 2.32
2973 3693 5.991606 TGAAGAATGACGAAAAGTGATCACT 59.008 36.000 22.89 22.89 44.94 3.41
3035 3975 4.813027 TCTCGTTACATGGAACCTTGTAC 58.187 43.478 15.31 11.43 36.66 2.90
3077 4041 2.749621 CAAACTGCGCCTTCTAAATCCT 59.250 45.455 4.18 0.00 0.00 3.24
3091 4055 7.532682 TTTTGACTTTGGATAAACAAACTGC 57.467 32.000 0.00 0.00 35.57 4.40
3132 4096 6.119536 TCCAGTCACAGAATTTTGTTACTGT 58.880 36.000 28.02 13.58 45.32 3.55
3133 4097 6.293626 CCTCCAGTCACAGAATTTTGTTACTG 60.294 42.308 25.58 25.58 45.89 2.74
3222 4265 7.283127 TCCACTAGCTGATGAACCAATTTATTC 59.717 37.037 0.00 0.00 0.00 1.75
3627 4670 1.822613 CTGCTGCATGTAGGCCCAG 60.823 63.158 13.03 7.62 0.00 4.45
3646 4689 3.372730 GGCCGCCATGAAGTTGCA 61.373 61.111 3.91 0.00 0.00 4.08
3840 4883 3.080121 AGCTCCTCCGCCTTCCTG 61.080 66.667 0.00 0.00 0.00 3.86
3985 5028 4.148825 CCTCCGGTGGCTCTTCCG 62.149 72.222 10.13 0.00 45.42 4.30
4217 5262 6.071051 TGAGCACCAACATAGAACATACTGTA 60.071 38.462 0.00 0.00 0.00 2.74
4218 5263 5.165961 AGCACCAACATAGAACATACTGT 57.834 39.130 0.00 0.00 0.00 3.55
4219 5264 5.178061 TGAGCACCAACATAGAACATACTG 58.822 41.667 0.00 0.00 0.00 2.74
4220 5265 5.420725 TGAGCACCAACATAGAACATACT 57.579 39.130 0.00 0.00 0.00 2.12
4221 5266 5.586243 ACATGAGCACCAACATAGAACATAC 59.414 40.000 0.00 0.00 0.00 2.39
4391 5458 1.270839 GGCACTATACCCGCATGACAT 60.271 52.381 0.00 0.00 0.00 3.06
4399 5466 1.399714 TGTCTGAGGCACTATACCCG 58.600 55.000 0.00 0.00 41.55 5.28
4403 5470 4.353777 AGGAAGTTGTCTGAGGCACTATA 58.646 43.478 0.00 0.00 41.55 1.31
4405 5472 2.609747 AGGAAGTTGTCTGAGGCACTA 58.390 47.619 0.00 0.00 41.55 2.74
4408 5475 2.050144 AGAAGGAAGTTGTCTGAGGCA 58.950 47.619 0.00 0.00 0.00 4.75
4409 5476 2.849294 AGAAGGAAGTTGTCTGAGGC 57.151 50.000 0.00 0.00 0.00 4.70
4410 5477 4.884164 ACAAAAGAAGGAAGTTGTCTGAGG 59.116 41.667 0.00 0.00 28.08 3.86
4411 5478 6.538742 TGTACAAAAGAAGGAAGTTGTCTGAG 59.461 38.462 0.00 0.00 35.82 3.35
4414 5481 6.657541 TGTTGTACAAAAGAAGGAAGTTGTCT 59.342 34.615 10.51 0.00 35.82 3.41
4415 5482 6.848451 TGTTGTACAAAAGAAGGAAGTTGTC 58.152 36.000 10.51 0.00 35.82 3.18
4416 5483 6.827586 TGTTGTACAAAAGAAGGAAGTTGT 57.172 33.333 10.51 0.00 37.86 3.32
4417 5484 8.190784 AGAATGTTGTACAAAAGAAGGAAGTTG 58.809 33.333 10.51 0.00 0.00 3.16
4418 5485 8.293699 AGAATGTTGTACAAAAGAAGGAAGTT 57.706 30.769 10.51 0.00 0.00 2.66
4420 5487 8.159344 AGAGAATGTTGTACAAAAGAAGGAAG 57.841 34.615 10.51 0.00 0.00 3.46
4423 5490 9.237846 GAAAAGAGAATGTTGTACAAAAGAAGG 57.762 33.333 10.51 0.00 0.00 3.46
4429 5496 9.396022 AGAGAAGAAAAGAGAATGTTGTACAAA 57.604 29.630 10.51 1.41 0.00 2.83
4430 5497 8.964476 AGAGAAGAAAAGAGAATGTTGTACAA 57.036 30.769 3.59 3.59 0.00 2.41
4431 5498 7.657761 GGAGAGAAGAAAAGAGAATGTTGTACA 59.342 37.037 0.00 0.00 0.00 2.90
4433 5500 7.162082 GGGAGAGAAGAAAAGAGAATGTTGTA 58.838 38.462 0.00 0.00 0.00 2.41
4434 5501 6.000840 GGGAGAGAAGAAAAGAGAATGTTGT 58.999 40.000 0.00 0.00 0.00 3.32
4442 8329 5.599999 TTATCCGGGAGAGAAGAAAAGAG 57.400 43.478 0.00 0.00 0.00 2.85
4455 8342 4.101119 GGAGAAAAGAGACATTATCCGGGA 59.899 45.833 0.00 0.00 28.33 5.14
4459 8346 5.590663 GGGTTGGAGAAAAGAGACATTATCC 59.409 44.000 0.00 0.00 37.42 2.59
4460 8347 5.590663 GGGGTTGGAGAAAAGAGACATTATC 59.409 44.000 0.00 0.00 0.00 1.75
4462 8349 4.601857 AGGGGTTGGAGAAAAGAGACATTA 59.398 41.667 0.00 0.00 0.00 1.90
4476 8363 1.079490 ACTCATGAGAGAGGGGTTGGA 59.921 52.381 29.27 0.00 44.98 3.53
4537 8425 3.196901 TGGTGGTCGTGAACTAGCAATAT 59.803 43.478 0.00 0.00 42.91 1.28
4541 8429 2.432119 TGGTGGTCGTGAACTAGCA 58.568 52.632 0.00 0.00 43.53 3.49
4542 8430 1.359848 CATGGTGGTCGTGAACTAGC 58.640 55.000 0.00 0.00 37.37 3.42
4543 8431 1.548719 TCCATGGTGGTCGTGAACTAG 59.451 52.381 12.58 0.00 39.03 2.57
4584 8472 6.225981 TCGATTTGAGAAATGATGAGAGGA 57.774 37.500 0.00 0.00 0.00 3.71
4604 8492 2.910688 AGCTCCAACTTGACTTTCGA 57.089 45.000 0.00 0.00 0.00 3.71
4612 8500 2.089980 CTGGATCCAAGCTCCAACTTG 58.910 52.381 17.00 0.00 42.12 3.16
4643 8536 2.168313 TCCATCGCACTTGATTGAGCTA 59.832 45.455 0.00 0.00 0.00 3.32
4658 8551 3.164269 CCCCTCACCCCTCCATCG 61.164 72.222 0.00 0.00 0.00 3.84
4685 8578 4.199310 GCTATTGCCAAATCTGGTGAGTA 58.801 43.478 0.00 0.00 45.53 2.59
4697 8590 1.013596 CGGAACATCGCTATTGCCAA 58.986 50.000 0.00 0.00 35.36 4.52
4706 8599 1.970917 CTGGCTTGTCGGAACATCGC 61.971 60.000 0.00 0.00 34.73 4.58
4708 8601 2.029838 ATCTGGCTTGTCGGAACATC 57.970 50.000 0.00 0.00 34.73 3.06
4714 8607 1.200020 GTGGAAAATCTGGCTTGTCGG 59.800 52.381 0.00 0.00 0.00 4.79
4716 8609 2.352127 GCAGTGGAAAATCTGGCTTGTC 60.352 50.000 0.00 0.00 32.94 3.18
4784 8677 4.679654 CGGAAAAGGTGCAAAATCACTAAC 59.320 41.667 0.00 0.00 37.16 2.34
4800 8693 4.578516 TGTATATGGGCAACATCGGAAAAG 59.421 41.667 0.00 0.00 41.03 2.27
4805 8698 5.221224 ACAAAATGTATATGGGCAACATCGG 60.221 40.000 0.00 0.00 41.03 4.18
4819 8712 8.026026 TGATCGTATGTTTGCAACAAAATGTAT 58.974 29.630 0.00 0.00 45.86 2.29
4835 8728 8.337532 CAATATCACAACATGTTGATCGTATGT 58.662 33.333 38.30 20.16 42.93 2.29
4842 8735 7.628769 TGTAGCAATATCACAACATGTTGAT 57.371 32.000 38.30 26.55 42.93 2.57
4879 8772 4.026393 CACGTGAAAACAGTTGTATCGTGA 60.026 41.667 19.77 0.00 45.36 4.35
4880 8773 4.200827 CACGTGAAAACAGTTGTATCGTG 58.799 43.478 10.90 14.44 39.57 4.35
4881 8774 3.302870 GCACGTGAAAACAGTTGTATCGT 60.303 43.478 22.23 0.00 0.00 3.73
4882 8775 3.059868 AGCACGTGAAAACAGTTGTATCG 60.060 43.478 22.23 0.00 0.00 2.92
4891 8784 4.624336 ATGTTTGTAGCACGTGAAAACA 57.376 36.364 26.59 26.59 42.86 2.83
4900 8793 6.442952 TCATGTAAACCAATGTTTGTAGCAC 58.557 36.000 1.14 0.00 44.27 4.40
4903 8796 7.089538 TGCATCATGTAAACCAATGTTTGTAG 58.910 34.615 1.14 0.00 44.27 2.74
4938 8831 6.829849 TGAAGCAAAATCCCTGAAAAGAATT 58.170 32.000 0.00 0.00 0.00 2.17
4950 8843 2.234414 TCCATTGGCTGAAGCAAAATCC 59.766 45.455 4.43 0.00 44.36 3.01
4969 8862 7.320443 TCTTATGTGTATGCAACAAATCTCC 57.680 36.000 7.65 0.00 40.63 3.71
5021 8914 4.081322 ACAGGGTAAAAGAATGTCACGT 57.919 40.909 0.00 0.00 0.00 4.49
5041 8934 4.595762 TTATGGCTGTCGATACCCTAAC 57.404 45.455 0.00 0.00 0.00 2.34
5064 8957 3.243367 CGTTTGAGAGACCAAATTTGCCA 60.243 43.478 12.92 1.01 38.18 4.92
5071 8964 1.860676 CGGACGTTTGAGAGACCAAA 58.139 50.000 0.00 0.00 34.03 3.28
5078 8971 2.049802 GTCCGCGGACGTTTGAGA 60.050 61.111 39.77 8.07 37.70 3.27
5103 8996 4.668289 ACAAAACAAATTCGGACACTGAC 58.332 39.130 0.00 0.00 0.00 3.51
5113 9006 5.872070 TGGTGGTCTGAAACAAAACAAATTC 59.128 36.000 0.00 0.00 0.00 2.17
5115 9008 5.413309 TGGTGGTCTGAAACAAAACAAAT 57.587 34.783 0.00 0.00 0.00 2.32
5122 9015 4.383850 CACAAATGGTGGTCTGAAACAA 57.616 40.909 0.00 0.00 44.04 2.83
5134 9027 1.373246 GCATGCACGCACAAATGGT 60.373 52.632 14.21 0.00 0.00 3.55
5145 9038 0.388907 GGTGACATGGTTGCATGCAC 60.389 55.000 22.58 15.35 38.08 4.57
5162 9055 2.223803 TGCCAACCGGATAATTTGGT 57.776 45.000 18.92 0.00 41.69 3.67
5186 9079 3.527253 TCTCTCTCTCTCTCTCCACCAAT 59.473 47.826 0.00 0.00 0.00 3.16
5187 9080 2.916269 TCTCTCTCTCTCTCTCCACCAA 59.084 50.000 0.00 0.00 0.00 3.67
5190 9083 3.706594 TCTCTCTCTCTCTCTCTCTCCAC 59.293 52.174 0.00 0.00 0.00 4.02
5191 9084 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
5192 9085 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
5223 9122 9.331282 CCGGATCACTTTTTCTCTTTCTATATT 57.669 33.333 0.00 0.00 0.00 1.28
5224 9123 7.934120 CCCGGATCACTTTTTCTCTTTCTATAT 59.066 37.037 0.73 0.00 0.00 0.86
5225 9124 7.125204 TCCCGGATCACTTTTTCTCTTTCTATA 59.875 37.037 0.73 0.00 0.00 1.31
5226 9125 6.070194 TCCCGGATCACTTTTTCTCTTTCTAT 60.070 38.462 0.73 0.00 0.00 1.98
5227 9126 5.247564 TCCCGGATCACTTTTTCTCTTTCTA 59.752 40.000 0.73 0.00 0.00 2.10
5228 9127 4.041691 TCCCGGATCACTTTTTCTCTTTCT 59.958 41.667 0.73 0.00 0.00 2.52
5229 9128 4.324267 TCCCGGATCACTTTTTCTCTTTC 58.676 43.478 0.73 0.00 0.00 2.62
5230 9129 4.367039 TCCCGGATCACTTTTTCTCTTT 57.633 40.909 0.73 0.00 0.00 2.52
5231 9130 4.265073 CATCCCGGATCACTTTTTCTCTT 58.735 43.478 0.73 0.00 0.00 2.85
5232 9131 3.370953 CCATCCCGGATCACTTTTTCTCT 60.371 47.826 0.73 0.00 36.56 3.10
5233 9132 2.945668 CCATCCCGGATCACTTTTTCTC 59.054 50.000 0.73 0.00 36.56 2.87
5234 9133 2.357154 CCCATCCCGGATCACTTTTTCT 60.357 50.000 0.73 0.00 36.56 2.52
5235 9134 2.024414 CCCATCCCGGATCACTTTTTC 58.976 52.381 0.73 0.00 36.56 2.29
5236 9135 1.959989 GCCCATCCCGGATCACTTTTT 60.960 52.381 0.73 0.00 36.56 1.94
5237 9136 0.395724 GCCCATCCCGGATCACTTTT 60.396 55.000 0.73 0.00 36.56 2.27
5238 9137 1.227383 GCCCATCCCGGATCACTTT 59.773 57.895 0.73 0.00 36.56 2.66
5239 9138 2.757124 GGCCCATCCCGGATCACTT 61.757 63.158 0.73 0.00 36.56 3.16
5240 9139 3.171388 GGCCCATCCCGGATCACT 61.171 66.667 0.73 0.00 36.56 3.41
5267 9166 1.412710 TGTGTCTGGACAGTTCTCCAC 59.587 52.381 3.47 0.00 42.74 4.02
5273 9172 1.335132 ACGGGTGTGTCTGGACAGTT 61.335 55.000 3.47 0.00 42.74 3.16
5281 9180 1.262640 GGGGATGTACGGGTGTGTCT 61.263 60.000 0.00 0.00 0.00 3.41
5287 9186 1.151413 AGGATATGGGGATGTACGGGT 59.849 52.381 0.00 0.00 0.00 5.28
5292 9191 1.805313 TGGGGAGGATATGGGGATGTA 59.195 52.381 0.00 0.00 0.00 2.29
5305 9204 8.297470 CCATAAACAATTCATATATGGGGAGG 57.703 38.462 12.78 2.54 39.42 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.