Multiple sequence alignment - TraesCS4A01G021600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G021600 chr4A 100.000 5727 0 0 1 5727 15637424 15643150 0.000000e+00 10576.0
1 TraesCS4A01G021600 chr4A 88.255 298 29 6 5402 5697 597896547 597896840 9.130000e-93 351.0
2 TraesCS4A01G021600 chr4A 85.556 90 10 3 3348 3434 15640732 15640821 2.200000e-14 91.6
3 TraesCS4A01G021600 chr4A 85.556 90 10 3 3309 3398 15640771 15640857 2.200000e-14 91.6
4 TraesCS4A01G021600 chr4A 89.831 59 4 1 5086 5142 60737231 60737173 2.210000e-09 75.0
5 TraesCS4A01G021600 chr4D 94.216 3233 129 25 808 4027 451299870 451296683 0.000000e+00 4881.0
6 TraesCS4A01G021600 chr4D 91.601 762 40 8 4027 4777 451296647 451295899 0.000000e+00 1031.0
7 TraesCS4A01G021600 chr4D 85.227 176 9 6 4835 4994 451295867 451295693 1.280000e-36 165.0
8 TraesCS4A01G021600 chr4D 86.047 86 9 1 3309 3394 451297343 451297261 7.900000e-14 89.8
9 TraesCS4A01G021600 chr4D 81.818 110 14 4 3348 3454 451297382 451297276 2.840000e-13 87.9
10 TraesCS4A01G021600 chr4B 94.584 1791 71 9 2112 3895 564904169 564902398 0.000000e+00 2747.0
11 TraesCS4A01G021600 chr4B 93.117 1293 62 10 808 2085 564905440 564904160 0.000000e+00 1869.0
12 TraesCS4A01G021600 chr4B 92.410 751 45 8 4030 4773 564902175 564901430 0.000000e+00 1061.0
13 TraesCS4A01G021600 chr4B 83.104 799 110 13 5 793 564906210 564905427 0.000000e+00 704.0
14 TraesCS4A01G021600 chr4B 95.455 132 4 2 3897 4027 564902343 564902213 5.810000e-50 209.0
15 TraesCS4A01G021600 chr4B 93.333 60 2 2 4788 4847 669979709 669979766 2.840000e-13 87.9
16 TraesCS4A01G021600 chr7B 80.172 696 120 17 1 684 19127381 19128070 6.620000e-139 505.0
17 TraesCS4A01G021600 chr7B 98.148 54 1 0 4787 4840 741797938 741797991 1.700000e-15 95.3
18 TraesCS4A01G021600 chr7B 98.148 54 1 0 4787 4840 741817439 741817492 1.700000e-15 95.3
19 TraesCS4A01G021600 chr3A 79.101 756 119 23 1 739 69264344 69265077 8.630000e-133 484.0
20 TraesCS4A01G021600 chr3A 79.160 643 120 11 1 634 109296706 109297343 3.170000e-117 433.0
21 TraesCS4A01G021600 chr6D 80.476 630 102 13 1 618 392284240 392283620 4.040000e-126 462.0
22 TraesCS4A01G021600 chr6D 88.079 302 29 7 5402 5701 97667723 97667427 9.130000e-93 351.0
23 TraesCS4A01G021600 chr6D 82.143 140 24 1 542 680 343135857 343135718 1.010000e-22 119.0
24 TraesCS4A01G021600 chr7D 77.870 723 143 12 1 709 118820420 118821139 3.170000e-117 433.0
25 TraesCS4A01G021600 chr7D 89.272 261 22 4 5141 5401 44519192 44518938 7.160000e-84 322.0
26 TraesCS4A01G021600 chr1D 78.406 690 127 16 1 675 203457461 203458143 4.100000e-116 429.0
27 TraesCS4A01G021600 chr1D 88.411 302 27 8 5402 5701 289773328 289773033 1.960000e-94 357.0
28 TraesCS4A01G021600 chr1B 78.414 681 120 18 1 660 278940098 278939424 8.880000e-113 418.0
29 TraesCS4A01G021600 chr1B 89.922 258 21 3 5141 5398 216104667 216104919 1.540000e-85 327.0
30 TraesCS4A01G021600 chr1B 92.063 63 3 2 4788 4850 395248960 395248900 2.840000e-13 87.9
31 TraesCS4A01G021600 chr5A 78.989 633 106 17 5 618 675309659 675309035 1.920000e-109 407.0
32 TraesCS4A01G021600 chr5A 81.370 365 52 8 263 618 596673501 596673144 3.380000e-72 283.0
33 TraesCS4A01G021600 chrUn 78.889 630 102 14 1 618 379282782 379283392 1.160000e-106 398.0
34 TraesCS4A01G021600 chrUn 88.411 302 32 3 5402 5701 102552600 102552300 1.520000e-95 361.0
35 TraesCS4A01G021600 chrUn 86.973 261 28 4 5138 5397 102553066 102552811 7.260000e-74 289.0
36 TraesCS4A01G021600 chr2D 88.742 302 31 3 5402 5701 63529547 63529247 3.260000e-97 366.0
37 TraesCS4A01G021600 chr2D 88.406 69 5 3 4788 4855 513035530 513035464 4.760000e-11 80.5
38 TraesCS4A01G021600 chr3B 88.411 302 29 6 5402 5701 548054028 548054325 5.460000e-95 359.0
39 TraesCS4A01G021600 chr3B 86.873 259 29 3 5140 5398 548053566 548053819 9.390000e-73 285.0
40 TraesCS4A01G021600 chr3B 79.821 223 38 6 5173 5394 66474955 66475171 7.680000e-34 156.0
41 TraesCS4A01G021600 chr3B 85.185 108 10 2 5035 5142 448586231 448586332 7.850000e-19 106.0
42 TraesCS4A01G021600 chr3B 96.364 55 1 1 4788 4842 577429267 577429320 7.900000e-14 89.8
43 TraesCS4A01G021600 chr3B 92.188 64 2 3 4788 4849 20487439 20487377 2.840000e-13 87.9
44 TraesCS4A01G021600 chr7A 88.119 303 29 7 5402 5701 20419650 20419948 2.540000e-93 353.0
45 TraesCS4A01G021600 chr7A 89.105 257 21 4 5141 5397 46963486 46963237 4.310000e-81 313.0
46 TraesCS4A01G021600 chr5B 88.079 302 30 6 5402 5701 338933881 338933584 2.540000e-93 353.0
47 TraesCS4A01G021600 chr3D 87.421 318 24 14 5393 5701 418774378 418774688 9.130000e-93 351.0
48 TraesCS4A01G021600 chr5D 88.506 261 23 5 5141 5401 357000174 356999921 5.570000e-80 309.0
49 TraesCS4A01G021600 chr5D 88.123 261 24 6 5141 5401 385950202 385949949 2.590000e-78 303.0
50 TraesCS4A01G021600 chr5D 87.547 265 27 4 5138 5401 442673370 442673629 9.330000e-78 302.0
51 TraesCS4A01G021600 chr1A 87.405 262 26 6 5141 5400 589960110 589960366 1.560000e-75 294.0
52 TraesCS4A01G021600 chr2B 96.296 54 1 1 4788 4841 5665499 5665447 2.840000e-13 87.9
53 TraesCS4A01G021600 chr2A 91.803 61 3 2 4788 4848 14026059 14026001 3.680000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G021600 chr4A 15637424 15643150 5726 False 3586.40 10576 90.370667 1 5727 3 chr4A.!!$F2 5726
1 TraesCS4A01G021600 chr4D 451295693 451299870 4177 True 1250.94 4881 87.781800 808 4994 5 chr4D.!!$R1 4186
2 TraesCS4A01G021600 chr4B 564901430 564906210 4780 True 1318.00 2747 91.734000 5 4773 5 chr4B.!!$R1 4768
3 TraesCS4A01G021600 chr7B 19127381 19128070 689 False 505.00 505 80.172000 1 684 1 chr7B.!!$F1 683
4 TraesCS4A01G021600 chr3A 69264344 69265077 733 False 484.00 484 79.101000 1 739 1 chr3A.!!$F1 738
5 TraesCS4A01G021600 chr3A 109296706 109297343 637 False 433.00 433 79.160000 1 634 1 chr3A.!!$F2 633
6 TraesCS4A01G021600 chr6D 392283620 392284240 620 True 462.00 462 80.476000 1 618 1 chr6D.!!$R3 617
7 TraesCS4A01G021600 chr7D 118820420 118821139 719 False 433.00 433 77.870000 1 709 1 chr7D.!!$F1 708
8 TraesCS4A01G021600 chr1D 203457461 203458143 682 False 429.00 429 78.406000 1 675 1 chr1D.!!$F1 674
9 TraesCS4A01G021600 chr1B 278939424 278940098 674 True 418.00 418 78.414000 1 660 1 chr1B.!!$R1 659
10 TraesCS4A01G021600 chr5A 675309035 675309659 624 True 407.00 407 78.989000 5 618 1 chr5A.!!$R2 613
11 TraesCS4A01G021600 chrUn 379282782 379283392 610 False 398.00 398 78.889000 1 618 1 chrUn.!!$F1 617
12 TraesCS4A01G021600 chrUn 102552300 102553066 766 True 325.00 361 87.692000 5138 5701 2 chrUn.!!$R1 563
13 TraesCS4A01G021600 chr3B 548053566 548054325 759 False 322.00 359 87.642000 5140 5701 2 chr3B.!!$F4 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 747 0.036388 GGCTTCCGTGATCCAGACAA 60.036 55.0 0.00 0.0 0.00 3.18 F
1106 1164 0.180171 CAGCCATGGATCGGTACCAA 59.820 55.0 18.40 0.0 40.93 3.67 F
1607 1670 0.326048 AGTGATCAGGGACAGGGAGG 60.326 60.0 0.00 0.0 0.00 4.30 F
2308 2425 0.395586 TAAGGGCCACACATCCATGC 60.396 55.0 6.18 0.0 0.00 4.06 F
3430 3549 0.694444 ACGGCAATCAGGGAGGGTAT 60.694 55.0 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 2406 0.395586 GCATGGATGTGTGGCCCTTA 60.396 55.000 0.00 0.0 0.00 2.69 R
3090 3209 1.200020 GGCTGGTGCTGTTGTTGATAC 59.800 52.381 0.00 0.0 39.59 2.24 R
3418 3537 0.551377 TTTGGCCATACCCTCCCTGA 60.551 55.000 6.09 0.0 37.83 3.86 R
3711 3836 2.195727 TCCAGCCACCATTATCTGACA 58.804 47.619 0.00 0.0 0.00 3.58 R
4751 4976 0.035056 GCAAGGAGCTAGGAAAGGCA 60.035 55.000 0.00 0.0 41.15 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 63 4.551960 GGCTAGGCGGGGGAGGTA 62.552 72.222 0.00 0.00 0.00 3.08
60 64 2.445274 GCTAGGCGGGGGAGGTAA 60.445 66.667 0.00 0.00 0.00 2.85
88 92 2.412323 TTGCCTCGCTCGTATCCGT 61.412 57.895 0.00 0.00 35.01 4.69
105 114 3.000819 TTGGTCTCGACGGGCCAT 61.001 61.111 4.39 0.00 0.00 4.40
121 130 0.886490 CCATCCAGCCGGCTTGTATC 60.886 60.000 30.60 0.00 0.00 2.24
137 146 5.560966 TTGTATCCCGAAGAAATGCTTTC 57.439 39.130 0.00 1.72 36.83 2.62
138 147 3.621268 TGTATCCCGAAGAAATGCTTTCG 59.379 43.478 0.04 0.04 44.29 3.46
139 148 1.448985 TCCCGAAGAAATGCTTTCGG 58.551 50.000 16.38 16.38 44.29 4.30
140 149 1.002659 TCCCGAAGAAATGCTTTCGGA 59.997 47.619 22.87 9.53 43.65 4.55
141 150 1.810151 CCCGAAGAAATGCTTTCGGAA 59.190 47.619 22.87 0.00 43.65 4.30
142 151 2.159517 CCCGAAGAAATGCTTTCGGAAG 60.160 50.000 22.87 0.00 43.65 3.46
183 213 1.010046 TGATGAAGGAGGAGATGGGGT 59.990 52.381 0.00 0.00 0.00 4.95
206 241 4.530857 CGGAGGGGCGCGATTCTT 62.531 66.667 12.10 0.00 0.00 2.52
216 251 1.813753 GCGATTCTTGCCCAGCGTA 60.814 57.895 0.00 0.00 0.00 4.42
245 280 3.429822 CGTTTAAATAGAGGGCGGACAGA 60.430 47.826 0.00 0.00 0.00 3.41
278 313 0.110554 GCGTTGCGTTTAATGTCGGT 60.111 50.000 0.00 0.00 0.00 4.69
308 343 3.041940 GGACGTGTGGCCGAAGTG 61.042 66.667 0.00 0.00 0.00 3.16
352 389 5.891551 GGGTTTAATGGAGGTGTATGAATGT 59.108 40.000 0.00 0.00 0.00 2.71
567 624 2.577059 CGGTCAGAAGCGGGCTTA 59.423 61.111 5.80 0.00 42.53 3.09
576 633 1.623542 AAGCGGGCTTAGGATCGGTT 61.624 55.000 3.68 0.00 38.28 4.44
636 694 1.268625 GCAAAAGAAAACCGTCCGGAT 59.731 47.619 7.81 0.00 38.96 4.18
663 721 2.416296 CGCAAACCGACACAGGTCTATA 60.416 50.000 0.00 0.00 45.21 1.31
689 747 0.036388 GGCTTCCGTGATCCAGACAA 60.036 55.000 0.00 0.00 0.00 3.18
709 767 4.444838 CGGTCCGGATGGTTGCGA 62.445 66.667 7.81 0.00 39.29 5.10
720 778 0.756294 TGGTTGCGAGAGGTTTGAGA 59.244 50.000 0.00 0.00 0.00 3.27
727 785 1.546961 GAGAGGTTTGAGAGTCCGGA 58.453 55.000 0.00 0.00 0.00 5.14
731 789 2.233922 GAGGTTTGAGAGTCCGGATTGA 59.766 50.000 7.81 0.00 0.00 2.57
739 797 1.139853 GAGTCCGGATTGAAGATGCCT 59.860 52.381 7.81 0.00 0.00 4.75
753 811 8.731275 TTGAAGATGCCTTTAATATTTCGAGA 57.269 30.769 0.00 0.00 31.62 4.04
754 812 8.908786 TGAAGATGCCTTTAATATTTCGAGAT 57.091 30.769 0.00 0.00 31.62 2.75
755 813 9.342308 TGAAGATGCCTTTAATATTTCGAGATT 57.658 29.630 0.00 0.00 31.62 2.40
757 815 9.956720 AAGATGCCTTTAATATTTCGAGATTTG 57.043 29.630 0.00 0.00 0.00 2.32
758 816 9.342308 AGATGCCTTTAATATTTCGAGATTTGA 57.658 29.630 0.00 0.00 0.00 2.69
759 817 9.604626 GATGCCTTTAATATTTCGAGATTTGAG 57.395 33.333 0.00 0.00 0.00 3.02
763 821 8.560374 CCTTTAATATTTCGAGATTTGAGGGTC 58.440 37.037 0.00 0.00 0.00 4.46
769 827 2.755655 TCGAGATTTGAGGGTCAGAGAC 59.244 50.000 0.00 0.00 0.00 3.36
776 834 4.029472 GGGTCAGAGACGCCCTTA 57.971 61.111 3.13 0.00 39.17 2.69
779 837 2.037144 GGGTCAGAGACGCCCTTAATA 58.963 52.381 3.13 0.00 39.17 0.98
780 838 2.633481 GGGTCAGAGACGCCCTTAATAT 59.367 50.000 3.13 0.00 39.17 1.28
781 839 3.071167 GGGTCAGAGACGCCCTTAATATT 59.929 47.826 3.13 0.00 39.17 1.28
782 840 4.444449 GGGTCAGAGACGCCCTTAATATTT 60.444 45.833 0.00 0.00 39.17 1.40
783 841 4.750598 GGTCAGAGACGCCCTTAATATTTC 59.249 45.833 0.00 0.00 32.65 2.17
784 842 4.444720 GTCAGAGACGCCCTTAATATTTCG 59.555 45.833 0.00 0.00 0.00 3.46
785 843 3.184581 CAGAGACGCCCTTAATATTTCGC 59.815 47.826 0.00 0.00 0.00 4.70
786 844 3.069729 AGAGACGCCCTTAATATTTCGCT 59.930 43.478 0.00 0.00 0.00 4.93
787 845 3.391049 AGACGCCCTTAATATTTCGCTC 58.609 45.455 0.00 0.00 0.00 5.03
788 846 3.128349 GACGCCCTTAATATTTCGCTCA 58.872 45.455 0.00 0.00 0.00 4.26
789 847 3.740115 ACGCCCTTAATATTTCGCTCAT 58.260 40.909 0.00 0.00 0.00 2.90
790 848 4.890088 ACGCCCTTAATATTTCGCTCATA 58.110 39.130 0.00 0.00 0.00 2.15
791 849 4.689345 ACGCCCTTAATATTTCGCTCATAC 59.311 41.667 0.00 0.00 0.00 2.39
792 850 4.201589 CGCCCTTAATATTTCGCTCATACG 60.202 45.833 0.00 0.00 0.00 3.06
793 851 4.435651 GCCCTTAATATTTCGCTCATACGC 60.436 45.833 0.00 0.00 0.00 4.42
794 852 4.092968 CCCTTAATATTTCGCTCATACGCC 59.907 45.833 0.00 0.00 0.00 5.68
795 853 4.688879 CCTTAATATTTCGCTCATACGCCA 59.311 41.667 0.00 0.00 0.00 5.69
796 854 5.163953 CCTTAATATTTCGCTCATACGCCAG 60.164 44.000 0.00 0.00 0.00 4.85
797 855 2.882927 TATTTCGCTCATACGCCAGT 57.117 45.000 0.00 0.00 0.00 4.00
798 856 2.882927 ATTTCGCTCATACGCCAGTA 57.117 45.000 0.00 0.00 37.24 2.74
799 857 2.658373 TTTCGCTCATACGCCAGTAA 57.342 45.000 0.00 0.00 36.29 2.24
800 858 2.658373 TTCGCTCATACGCCAGTAAA 57.342 45.000 0.00 0.00 36.29 2.01
801 859 2.658373 TCGCTCATACGCCAGTAAAA 57.342 45.000 0.00 0.00 36.29 1.52
802 860 2.962125 TCGCTCATACGCCAGTAAAAA 58.038 42.857 0.00 0.00 36.29 1.94
855 913 7.868415 AGTATCTTAGCAATATTCGGAAGTCAC 59.132 37.037 0.00 0.00 0.00 3.67
861 919 6.381801 AGCAATATTCGGAAGTCACAAAAAG 58.618 36.000 0.00 0.00 0.00 2.27
1033 1091 2.985282 CCCCTTCAGCAGCGCAAA 60.985 61.111 11.47 0.00 0.00 3.68
1106 1164 0.180171 CAGCCATGGATCGGTACCAA 59.820 55.000 18.40 0.00 40.93 3.67
1305 1363 2.231529 CCGTATCCTCGGTCAGATCTT 58.768 52.381 0.00 0.00 44.77 2.40
1346 1404 2.503356 TGGCAAATTTGGGCGGAATATT 59.497 40.909 19.47 0.00 0.00 1.28
1376 1434 1.470805 CCCATACAGCATCGAACGTGA 60.471 52.381 0.00 0.00 0.00 4.35
1378 1436 2.530177 CATACAGCATCGAACGTGACT 58.470 47.619 0.00 0.00 0.00 3.41
1393 1451 1.593006 GTGACTGTTGATTATCGGCCG 59.407 52.381 22.12 22.12 0.00 6.13
1435 1493 6.036735 GCAATGATATCTTGTTTTGCTTGCAT 59.963 34.615 3.98 0.00 37.18 3.96
1521 1584 5.243981 CCATCTGGTTAAGGATATCTGCAG 58.756 45.833 7.63 7.63 0.00 4.41
1547 1610 9.694137 GTATCTAAGTTAGCGAGTAATGGATTT 57.306 33.333 4.93 0.00 0.00 2.17
1556 1619 4.610680 GCGAGTAATGGATTTACGGAATGC 60.611 45.833 0.00 0.00 44.15 3.56
1600 1663 1.908483 GGGGTGAGTGATCAGGGAC 59.092 63.158 0.00 0.00 0.00 4.46
1601 1664 0.909610 GGGGTGAGTGATCAGGGACA 60.910 60.000 0.00 0.00 0.00 4.02
1602 1665 0.539051 GGGTGAGTGATCAGGGACAG 59.461 60.000 0.00 0.00 0.00 3.51
1603 1666 0.539051 GGTGAGTGATCAGGGACAGG 59.461 60.000 0.00 0.00 0.00 4.00
1605 1668 0.413434 TGAGTGATCAGGGACAGGGA 59.587 55.000 0.00 0.00 0.00 4.20
1606 1669 1.118838 GAGTGATCAGGGACAGGGAG 58.881 60.000 0.00 0.00 0.00 4.30
1607 1670 0.326048 AGTGATCAGGGACAGGGAGG 60.326 60.000 0.00 0.00 0.00 4.30
1608 1671 0.618968 GTGATCAGGGACAGGGAGGT 60.619 60.000 0.00 0.00 0.00 3.85
1609 1672 1.015609 TGATCAGGGACAGGGAGGTA 58.984 55.000 0.00 0.00 0.00 3.08
1610 1673 1.062886 TGATCAGGGACAGGGAGGTAG 60.063 57.143 0.00 0.00 0.00 3.18
1782 1849 5.059404 ACAATAAATTCAGCGTCCCTTTG 57.941 39.130 0.00 0.00 0.00 2.77
1867 1946 8.255206 TCTTGAGCTTATCGAATTTAGTTGGTA 58.745 33.333 0.00 0.00 0.00 3.25
1895 1974 7.225784 ACATGAGTCATCAGTCTGGATATAC 57.774 40.000 1.56 0.00 39.29 1.47
1963 2045 1.683011 CCCTTCATCGTGGAGCCAATT 60.683 52.381 0.00 0.00 0.00 2.32
1964 2046 1.402968 CCTTCATCGTGGAGCCAATTG 59.597 52.381 0.00 0.00 0.00 2.32
1965 2047 0.810648 TTCATCGTGGAGCCAATTGC 59.189 50.000 0.00 0.00 41.71 3.56
2002 2084 6.350780 GGAAATGAGATTGAAGCCAGAACATT 60.351 38.462 0.00 0.00 0.00 2.71
2004 2086 6.939132 ATGAGATTGAAGCCAGAACATTAG 57.061 37.500 0.00 0.00 0.00 1.73
2007 2089 4.946157 AGATTGAAGCCAGAACATTAGTGG 59.054 41.667 0.00 0.00 0.00 4.00
2023 2105 2.686835 GGCTCTCCTGCCCTGTCT 60.687 66.667 0.00 0.00 46.82 3.41
2028 2110 2.676748 CTCTCCTGCCCTGTCTTATCT 58.323 52.381 0.00 0.00 0.00 1.98
2034 2116 4.534500 TCCTGCCCTGTCTTATCTTTTGTA 59.466 41.667 0.00 0.00 0.00 2.41
2035 2117 5.013704 TCCTGCCCTGTCTTATCTTTTGTAA 59.986 40.000 0.00 0.00 0.00 2.41
2075 2157 1.220749 GGTCCTCGCATGCACCTAA 59.779 57.895 19.57 0.00 0.00 2.69
2085 2202 3.561310 CGCATGCACCTAACTGATATTGT 59.439 43.478 19.57 0.00 0.00 2.71
2086 2203 4.035558 CGCATGCACCTAACTGATATTGTT 59.964 41.667 19.57 1.65 0.00 2.83
2087 2204 5.449041 CGCATGCACCTAACTGATATTGTTT 60.449 40.000 19.57 0.00 0.00 2.83
2088 2205 5.973565 GCATGCACCTAACTGATATTGTTTC 59.026 40.000 14.21 0.00 0.00 2.78
2089 2206 6.183360 GCATGCACCTAACTGATATTGTTTCT 60.183 38.462 14.21 0.00 0.00 2.52
2090 2207 6.741992 TGCACCTAACTGATATTGTTTCTG 57.258 37.500 1.35 0.00 0.00 3.02
2091 2208 6.237901 TGCACCTAACTGATATTGTTTCTGT 58.762 36.000 1.35 0.00 0.00 3.41
2092 2209 7.390823 TGCACCTAACTGATATTGTTTCTGTA 58.609 34.615 1.35 0.00 0.00 2.74
2093 2210 7.880713 TGCACCTAACTGATATTGTTTCTGTAA 59.119 33.333 1.35 0.00 0.00 2.41
2094 2211 8.893727 GCACCTAACTGATATTGTTTCTGTAAT 58.106 33.333 1.35 0.00 0.00 1.89
2096 2213 8.893727 ACCTAACTGATATTGTTTCTGTAATGC 58.106 33.333 1.35 0.00 0.00 3.56
2097 2214 9.113838 CCTAACTGATATTGTTTCTGTAATGCT 57.886 33.333 1.35 0.00 0.00 3.79
2098 2215 9.926751 CTAACTGATATTGTTTCTGTAATGCTG 57.073 33.333 1.35 0.00 0.00 4.41
2099 2216 6.789262 ACTGATATTGTTTCTGTAATGCTGC 58.211 36.000 0.00 0.00 0.00 5.25
2100 2217 6.135290 TGATATTGTTTCTGTAATGCTGCC 57.865 37.500 0.00 0.00 0.00 4.85
2101 2218 5.651576 TGATATTGTTTCTGTAATGCTGCCA 59.348 36.000 0.00 0.00 0.00 4.92
2102 2219 3.921119 TTGTTTCTGTAATGCTGCCAG 57.079 42.857 0.00 0.00 0.00 4.85
2103 2220 1.541147 TGTTTCTGTAATGCTGCCAGC 59.459 47.619 10.45 10.45 42.82 4.85
2131 2248 4.069300 TGCTGTTTTGCATTTTCATGGA 57.931 36.364 0.00 0.00 38.12 3.41
2152 2269 6.830912 TGGATGCTACTTGCTATTAGTCATT 58.169 36.000 0.00 0.00 43.37 2.57
2161 2278 5.772825 TGCTATTAGTCATTGCCATTTCC 57.227 39.130 0.00 0.00 33.03 3.13
2162 2279 5.199723 TGCTATTAGTCATTGCCATTTCCA 58.800 37.500 0.00 0.00 33.03 3.53
2170 2287 4.923281 GTCATTGCCATTTCCACAAGTTAC 59.077 41.667 0.00 0.00 0.00 2.50
2210 2327 2.900528 CGATATCGCACCACTTCCC 58.099 57.895 12.95 0.00 0.00 3.97
2251 2368 3.540617 ACAATTGTTTCAAAGTTGGGGC 58.459 40.909 4.92 0.00 0.00 5.80
2278 2395 4.991687 CCACTCAGTCTAAAGTTCTCAACC 59.008 45.833 0.00 0.00 0.00 3.77
2286 2403 6.271159 AGTCTAAAGTTCTCAACCTTGATCCT 59.729 38.462 0.00 0.00 36.46 3.24
2289 2406 8.826765 TCTAAAGTTCTCAACCTTGATCCTTAT 58.173 33.333 0.00 0.00 36.46 1.73
2308 2425 0.395586 TAAGGGCCACACATCCATGC 60.396 55.000 6.18 0.00 0.00 4.06
2320 2437 4.081862 ACACATCCATGCAATCCTTCTTTG 60.082 41.667 0.00 0.00 0.00 2.77
2404 2521 2.172483 CTACGCCACTTCTGCTGGGT 62.172 60.000 0.00 0.00 0.00 4.51
2480 2599 2.802057 GCTCACCCGTATCACATGTACC 60.802 54.545 0.00 0.00 0.00 3.34
2588 2707 2.939103 CAGCAAGACAGTGGCTATTACC 59.061 50.000 0.00 0.00 35.82 2.85
2708 2827 2.746904 TGGGTTGCATCAAGATACAACG 59.253 45.455 16.02 0.00 42.92 4.10
2810 2929 2.425143 TGCTGATTCCTTGGATCACC 57.575 50.000 0.00 0.00 30.77 4.02
2960 3079 5.797051 ACATGTTTTCCTTCCCATGATTTG 58.203 37.500 5.56 0.00 38.40 2.32
3090 3209 1.298859 GGTACCAGCAAGTTCAGCGG 61.299 60.000 7.15 0.00 37.01 5.52
3152 3271 7.717436 TCAAACAGGTGAACATACAATCACTAA 59.283 33.333 5.95 0.00 44.20 2.24
3193 3312 5.633830 ACTGATTGCTAACTTGTTCCATG 57.366 39.130 0.00 0.00 0.00 3.66
3418 3537 1.607612 CCAGGGAGGTTACGGCAAT 59.392 57.895 0.00 0.00 0.00 3.56
3430 3549 0.694444 ACGGCAATCAGGGAGGGTAT 60.694 55.000 0.00 0.00 0.00 2.73
3472 3591 3.687045 TGGAGGGGGTTATGGTTATGAT 58.313 45.455 0.00 0.00 0.00 2.45
3549 3670 1.243342 TTCAAGGTTGCCCATCAGCG 61.243 55.000 0.00 0.00 34.65 5.18
3596 3717 6.766467 CCTTACAGAAGTGGAGTTTAGTGTTT 59.234 38.462 0.00 0.00 0.00 2.83
3653 3778 4.941325 GGTCTTCCCTGAAAATCGTTAC 57.059 45.455 0.00 0.00 0.00 2.50
3654 3779 4.320870 GGTCTTCCCTGAAAATCGTTACA 58.679 43.478 0.00 0.00 0.00 2.41
3655 3780 4.758165 GGTCTTCCCTGAAAATCGTTACAA 59.242 41.667 0.00 0.00 0.00 2.41
3656 3781 5.239963 GGTCTTCCCTGAAAATCGTTACAAA 59.760 40.000 0.00 0.00 0.00 2.83
3657 3782 6.238814 GGTCTTCCCTGAAAATCGTTACAAAA 60.239 38.462 0.00 0.00 0.00 2.44
3658 3783 7.197703 GTCTTCCCTGAAAATCGTTACAAAAA 58.802 34.615 0.00 0.00 0.00 1.94
3659 3784 7.378728 GTCTTCCCTGAAAATCGTTACAAAAAG 59.621 37.037 0.00 0.00 0.00 2.27
3660 3785 6.702716 TCCCTGAAAATCGTTACAAAAAGT 57.297 33.333 0.00 0.00 0.00 2.66
3661 3786 7.102847 TCCCTGAAAATCGTTACAAAAAGTT 57.897 32.000 0.00 0.00 0.00 2.66
3662 3787 6.975772 TCCCTGAAAATCGTTACAAAAAGTTG 59.024 34.615 0.00 0.00 40.84 3.16
3663 3788 6.200097 CCCTGAAAATCGTTACAAAAAGTTGG 59.800 38.462 0.00 0.00 39.22 3.77
3664 3789 6.200097 CCTGAAAATCGTTACAAAAAGTTGGG 59.800 38.462 0.00 0.00 39.22 4.12
3665 3790 6.043411 TGAAAATCGTTACAAAAAGTTGGGG 58.957 36.000 0.00 0.00 39.22 4.96
3666 3791 5.601583 AAATCGTTACAAAAAGTTGGGGT 57.398 34.783 0.00 0.00 39.22 4.95
3667 3792 4.577834 ATCGTTACAAAAAGTTGGGGTG 57.422 40.909 0.00 0.00 39.22 4.61
3668 3793 3.354467 TCGTTACAAAAAGTTGGGGTGT 58.646 40.909 0.00 0.00 39.22 4.16
3673 3798 4.459390 ACAAAAAGTTGGGGTGTTACAC 57.541 40.909 6.99 6.99 39.22 2.90
3711 3836 9.520515 AACTATGTGTTCTCACCATTTTATCTT 57.479 29.630 0.00 0.00 43.26 2.40
3805 3930 4.783763 TGGGGATACAGTGGTATGTACAAA 59.216 41.667 0.00 0.00 40.28 2.83
3806 3931 5.430417 TGGGGATACAGTGGTATGTACAAAT 59.570 40.000 0.00 0.00 40.28 2.32
3807 3932 5.995897 GGGGATACAGTGGTATGTACAAATC 59.004 44.000 0.00 0.00 40.28 2.17
3808 3933 6.408776 GGGGATACAGTGGTATGTACAAATCA 60.409 42.308 0.00 0.00 40.28 2.57
3856 3981 6.363357 GCATGAATTGAACTTTCTGTTGGTAC 59.637 38.462 0.00 0.00 39.30 3.34
3879 4004 4.949856 CCCACCTATCTTGTGCATTTACTT 59.050 41.667 0.00 0.00 32.30 2.24
3885 4010 7.831193 ACCTATCTTGTGCATTTACTTCATCTT 59.169 33.333 0.00 0.00 0.00 2.40
3887 4012 6.258230 TCTTGTGCATTTACTTCATCTTGG 57.742 37.500 0.00 0.00 0.00 3.61
3928 4106 2.556144 TTTCTGCTGCTGACTGATGT 57.444 45.000 8.84 0.00 0.00 3.06
3956 4134 5.885230 TTATGGCAGAACTTCAGTGAATG 57.115 39.130 5.91 2.89 0.00 2.67
3962 4140 5.163713 GGCAGAACTTCAGTGAATGGTATTC 60.164 44.000 5.91 6.05 0.00 1.75
4135 4354 2.153645 ACCATGTGCATGTGTACTGTG 58.846 47.619 10.76 2.57 37.11 3.66
4138 4357 3.441222 CCATGTGCATGTGTACTGTGATT 59.559 43.478 10.76 0.00 37.11 2.57
4140 4359 5.297527 CCATGTGCATGTGTACTGTGATTAT 59.702 40.000 10.76 0.00 37.11 1.28
4169 4389 5.453567 AGCCTGAACTTGTATTTGAAACC 57.546 39.130 0.00 0.00 0.00 3.27
4181 4401 9.258826 CTTGTATTTGAAACCATGATTGAAACA 57.741 29.630 0.00 0.00 0.00 2.83
4210 4430 9.944376 AACTGTATGTGCTTTAGAGAAAAGATA 57.056 29.630 1.78 0.00 46.44 1.98
4253 4474 5.046663 TCCTGGGCATTAATTCAAAAGGTTC 60.047 40.000 0.00 0.00 0.00 3.62
4255 4476 4.524714 TGGGCATTAATTCAAAAGGTTCGA 59.475 37.500 0.00 0.00 0.00 3.71
4266 4487 1.680338 AAGGTTCGAAGCTTGCTTGT 58.320 45.000 34.71 15.33 44.32 3.16
4267 4488 2.543777 AGGTTCGAAGCTTGCTTGTA 57.456 45.000 23.57 0.00 31.69 2.41
4276 4497 7.700322 TCGAAGCTTGCTTGTATAGATTTAG 57.300 36.000 12.92 0.00 0.00 1.85
4300 4521 8.904099 AGTAAGTCTTTAAACAATACAGCACT 57.096 30.769 0.00 0.00 0.00 4.40
4301 4522 8.774586 AGTAAGTCTTTAAACAATACAGCACTG 58.225 33.333 0.00 0.00 0.00 3.66
4310 4531 5.405935 ACAATACAGCACTGTGTATCAGA 57.594 39.130 13.50 0.00 46.27 3.27
4335 4556 4.759693 TCGGTTGTCTTGTTCTTGCATAAT 59.240 37.500 0.00 0.00 0.00 1.28
4339 4560 6.528072 GGTTGTCTTGTTCTTGCATAATAAGC 59.472 38.462 11.60 8.76 0.00 3.09
4342 4563 6.434028 TGTCTTGTTCTTGCATAATAAGCCTT 59.566 34.615 11.60 0.00 0.00 4.35
4636 4861 4.433615 AGCTATAATCGCCAATGGTATCG 58.566 43.478 0.00 0.00 0.00 2.92
4734 4959 7.659652 AGAGTGCAGTTTTGAATAGTAGTTC 57.340 36.000 0.00 0.00 0.00 3.01
4751 4976 6.534634 AGTAGTTCATCTGTTTACCAGCTTT 58.465 36.000 0.00 0.00 41.25 3.51
4752 4977 5.695851 AGTTCATCTGTTTACCAGCTTTG 57.304 39.130 0.00 0.00 41.25 2.77
4755 4980 2.656947 TCTGTTTACCAGCTTTGCCT 57.343 45.000 0.00 0.00 41.25 4.75
4762 4987 2.206576 ACCAGCTTTGCCTTTCCTAG 57.793 50.000 0.00 0.00 0.00 3.02
4769 4994 2.496899 TTGCCTTTCCTAGCTCCTTG 57.503 50.000 0.00 0.00 0.00 3.61
4777 5002 2.320781 TCCTAGCTCCTTGCCATCTAC 58.679 52.381 0.00 0.00 44.23 2.59
4778 5003 2.091055 TCCTAGCTCCTTGCCATCTACT 60.091 50.000 0.00 0.00 44.23 2.57
4779 5004 2.298729 CCTAGCTCCTTGCCATCTACTC 59.701 54.545 0.00 0.00 44.23 2.59
4780 5005 1.127343 AGCTCCTTGCCATCTACTCC 58.873 55.000 0.00 0.00 44.23 3.85
4781 5006 0.107643 GCTCCTTGCCATCTACTCCC 59.892 60.000 0.00 0.00 35.15 4.30
4782 5007 1.799933 CTCCTTGCCATCTACTCCCT 58.200 55.000 0.00 0.00 0.00 4.20
4784 5009 0.761802 CCTTGCCATCTACTCCCTCC 59.238 60.000 0.00 0.00 0.00 4.30
4785 5010 0.390860 CTTGCCATCTACTCCCTCCG 59.609 60.000 0.00 0.00 0.00 4.63
4787 5012 0.325296 TGCCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
4788 5013 1.063492 TGCCATCTACTCCCTCCGTTA 60.063 52.381 0.00 0.00 0.00 3.18
4789 5014 1.614413 GCCATCTACTCCCTCCGTTAG 59.386 57.143 0.00 0.00 0.00 2.34
4790 5015 2.752154 GCCATCTACTCCCTCCGTTAGA 60.752 54.545 0.00 0.00 0.00 2.10
4791 5016 3.768878 CCATCTACTCCCTCCGTTAGAT 58.231 50.000 0.00 0.00 0.00 1.98
4792 5017 4.810033 GCCATCTACTCCCTCCGTTAGATA 60.810 50.000 0.00 0.00 0.00 1.98
4793 5018 4.701171 CCATCTACTCCCTCCGTTAGATAC 59.299 50.000 0.00 0.00 0.00 2.24
4794 5019 5.314529 CATCTACTCCCTCCGTTAGATACA 58.685 45.833 0.00 0.00 0.00 2.29
4795 5020 5.579753 TCTACTCCCTCCGTTAGATACAT 57.420 43.478 0.00 0.00 0.00 2.29
4796 5021 5.558818 TCTACTCCCTCCGTTAGATACATC 58.441 45.833 0.00 0.00 0.00 3.06
4797 5022 3.498334 ACTCCCTCCGTTAGATACATCC 58.502 50.000 0.00 0.00 0.00 3.51
4799 5024 4.090090 CTCCCTCCGTTAGATACATCCAT 58.910 47.826 0.00 0.00 0.00 3.41
4800 5025 4.489737 TCCCTCCGTTAGATACATCCATT 58.510 43.478 0.00 0.00 0.00 3.16
4801 5026 4.905456 TCCCTCCGTTAGATACATCCATTT 59.095 41.667 0.00 0.00 0.00 2.32
4802 5027 5.011738 TCCCTCCGTTAGATACATCCATTTC 59.988 44.000 0.00 0.00 0.00 2.17
4803 5028 5.238583 CCTCCGTTAGATACATCCATTTCC 58.761 45.833 0.00 0.00 0.00 3.13
4804 5029 4.878439 TCCGTTAGATACATCCATTTCCG 58.122 43.478 0.00 0.00 0.00 4.30
4806 5031 4.923871 CCGTTAGATACATCCATTTCCGAG 59.076 45.833 0.00 0.00 0.00 4.63
4807 5032 5.278808 CCGTTAGATACATCCATTTCCGAGA 60.279 44.000 0.00 0.00 0.00 4.04
4808 5033 5.629849 CGTTAGATACATCCATTTCCGAGAC 59.370 44.000 0.00 0.00 0.00 3.36
4809 5034 6.513180 GTTAGATACATCCATTTCCGAGACA 58.487 40.000 0.00 0.00 0.00 3.41
4810 5035 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4811 5036 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4812 5037 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4813 5038 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4814 5039 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4815 5040 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4816 5041 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4817 5042 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4818 5043 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4819 5044 4.941263 CCATTTCCGAGACAAGTAATTCCA 59.059 41.667 0.00 0.00 0.00 3.53
4820 5045 5.414454 CCATTTCCGAGACAAGTAATTCCAA 59.586 40.000 0.00 0.00 0.00 3.53
4821 5046 6.072175 CCATTTCCGAGACAAGTAATTCCAAA 60.072 38.462 0.00 0.00 0.00 3.28
4822 5047 5.934935 TTCCGAGACAAGTAATTCCAAAC 57.065 39.130 0.00 0.00 0.00 2.93
4823 5048 3.991773 TCCGAGACAAGTAATTCCAAACG 59.008 43.478 0.00 0.00 0.00 3.60
4824 5049 3.124636 CCGAGACAAGTAATTCCAAACGG 59.875 47.826 0.00 0.00 0.00 4.44
4825 5050 3.991773 CGAGACAAGTAATTCCAAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
4826 5051 4.091509 CGAGACAAGTAATTCCAAACGGAG 59.908 45.833 0.00 0.00 32.88 4.63
4827 5052 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
4828 5053 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
4829 5054 3.073356 ACAAGTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
4830 5055 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
4831 5056 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
4832 5057 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
4833 5058 3.629142 AATTCCAAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 34.02 2.57
4846 5071 6.552350 ACGGAGGGAGTAGTATGCTATAAAAA 59.448 38.462 0.00 0.00 0.00 1.94
4891 5116 0.902531 TGTAGCTTACTGACCTGGGC 59.097 55.000 0.00 0.00 0.00 5.36
4909 5135 2.353803 GGGCGAAGAGAACTGAAGCTTA 60.354 50.000 0.00 0.00 0.00 3.09
4913 5139 5.103000 GCGAAGAGAACTGAAGCTTATGTA 58.897 41.667 0.00 0.00 0.00 2.29
4918 5144 6.393990 AGAGAACTGAAGCTTATGTACTGTG 58.606 40.000 0.00 0.00 0.00 3.66
4929 5155 8.649973 AGCTTATGTACTGTGAAAACTATAGC 57.350 34.615 0.00 0.00 0.00 2.97
4936 5162 5.580022 ACTGTGAAAACTATAGCCCCAATT 58.420 37.500 0.00 0.00 0.00 2.32
4966 5207 4.579869 TCAGCTGGAAATCTAGTTTGACC 58.420 43.478 15.13 0.00 0.00 4.02
4994 5235 1.255667 TAGACCCTGACCGCTTCCAC 61.256 60.000 0.00 0.00 0.00 4.02
4995 5236 3.607370 GACCCTGACCGCTTCCACC 62.607 68.421 0.00 0.00 0.00 4.61
4996 5237 4.760047 CCCTGACCGCTTCCACCG 62.760 72.222 0.00 0.00 0.00 4.94
5003 5244 4.924019 CGCTTCCACCGGACATAA 57.076 55.556 9.46 0.00 0.00 1.90
5004 5245 3.379650 CGCTTCCACCGGACATAAT 57.620 52.632 9.46 0.00 0.00 1.28
5005 5246 1.663695 CGCTTCCACCGGACATAATT 58.336 50.000 9.46 0.00 0.00 1.40
5006 5247 2.014128 CGCTTCCACCGGACATAATTT 58.986 47.619 9.46 0.00 0.00 1.82
5007 5248 2.422127 CGCTTCCACCGGACATAATTTT 59.578 45.455 9.46 0.00 0.00 1.82
5008 5249 3.119637 CGCTTCCACCGGACATAATTTTT 60.120 43.478 9.46 0.00 0.00 1.94
5024 5265 2.128729 TTTTTGGGAAAGGCCACGG 58.871 52.632 5.01 0.00 38.95 4.94
5025 5266 1.403687 TTTTTGGGAAAGGCCACGGG 61.404 55.000 5.01 0.00 38.95 5.28
5026 5267 3.819016 TTTGGGAAAGGCCACGGGG 62.819 63.158 5.01 0.00 38.95 5.73
5036 5277 2.431683 CCACGGGGCATATCTGGG 59.568 66.667 0.00 0.00 0.00 4.45
5037 5278 2.452064 CCACGGGGCATATCTGGGT 61.452 63.158 0.00 0.00 0.00 4.51
5038 5279 1.125093 CCACGGGGCATATCTGGGTA 61.125 60.000 0.00 0.00 0.00 3.69
5039 5280 0.762418 CACGGGGCATATCTGGGTAA 59.238 55.000 0.00 0.00 0.00 2.85
5040 5281 1.142060 CACGGGGCATATCTGGGTAAA 59.858 52.381 0.00 0.00 0.00 2.01
5041 5282 1.847737 ACGGGGCATATCTGGGTAAAA 59.152 47.619 0.00 0.00 0.00 1.52
5042 5283 2.242708 ACGGGGCATATCTGGGTAAAAA 59.757 45.455 0.00 0.00 0.00 1.94
5064 5305 6.976934 AAACCTCACAATCAATTAAGGTGT 57.023 33.333 0.00 0.00 37.21 4.16
5065 5306 6.976934 AACCTCACAATCAATTAAGGTGTT 57.023 33.333 0.00 0.00 37.21 3.32
5066 5307 6.976934 ACCTCACAATCAATTAAGGTGTTT 57.023 33.333 0.00 0.00 35.84 2.83
5067 5308 8.472007 AACCTCACAATCAATTAAGGTGTTTA 57.528 30.769 0.00 0.00 37.21 2.01
5068 5309 8.472007 ACCTCACAATCAATTAAGGTGTTTAA 57.528 30.769 0.00 0.00 35.84 1.52
5069 5310 8.357402 ACCTCACAATCAATTAAGGTGTTTAAC 58.643 33.333 0.00 0.00 35.84 2.01
5070 5311 8.576442 CCTCACAATCAATTAAGGTGTTTAACT 58.424 33.333 0.00 0.00 34.22 2.24
5071 5312 9.398170 CTCACAATCAATTAAGGTGTTTAACTG 57.602 33.333 0.00 0.00 34.22 3.16
5072 5313 9.126151 TCACAATCAATTAAGGTGTTTAACTGA 57.874 29.630 0.00 0.00 40.53 3.41
5073 5314 9.743057 CACAATCAATTAAGGTGTTTAACTGAA 57.257 29.630 0.00 0.00 39.91 3.02
5078 5319 9.757227 TCAATTAAGGTGTTTAACTGAAATTGG 57.243 29.630 14.84 0.00 35.29 3.16
5079 5320 8.987890 CAATTAAGGTGTTTAACTGAAATTGGG 58.012 33.333 0.00 0.00 31.75 4.12
5080 5321 7.663043 TTAAGGTGTTTAACTGAAATTGGGT 57.337 32.000 0.00 0.00 0.00 4.51
5081 5322 5.784578 AGGTGTTTAACTGAAATTGGGTC 57.215 39.130 0.00 0.00 0.00 4.46
5082 5323 5.205056 AGGTGTTTAACTGAAATTGGGTCA 58.795 37.500 0.00 0.00 0.00 4.02
5083 5324 5.068591 AGGTGTTTAACTGAAATTGGGTCAC 59.931 40.000 0.00 0.00 0.00 3.67
5084 5325 5.286438 GTGTTTAACTGAAATTGGGTCACC 58.714 41.667 0.00 0.00 37.24 4.02
5085 5326 5.068591 GTGTTTAACTGAAATTGGGTCACCT 59.931 40.000 0.00 0.00 37.76 4.00
5086 5327 5.068460 TGTTTAACTGAAATTGGGTCACCTG 59.932 40.000 0.00 0.00 37.76 4.00
5087 5328 3.593442 AACTGAAATTGGGTCACCTGA 57.407 42.857 0.00 0.00 37.76 3.86
5088 5329 2.863809 ACTGAAATTGGGTCACCTGAC 58.136 47.619 0.00 0.00 44.04 3.51
5089 5330 2.443255 ACTGAAATTGGGTCACCTGACT 59.557 45.455 5.44 0.00 44.20 3.41
5090 5331 2.816087 CTGAAATTGGGTCACCTGACTG 59.184 50.000 5.44 0.00 44.20 3.51
5091 5332 2.441375 TGAAATTGGGTCACCTGACTGA 59.559 45.455 5.44 0.00 44.20 3.41
5092 5333 2.867109 AATTGGGTCACCTGACTGAG 57.133 50.000 5.44 0.00 44.20 3.35
5093 5334 1.734655 ATTGGGTCACCTGACTGAGT 58.265 50.000 5.44 0.00 44.20 3.41
5094 5335 1.048601 TTGGGTCACCTGACTGAGTC 58.951 55.000 5.47 5.47 44.20 3.36
5095 5336 0.105709 TGGGTCACCTGACTGAGTCA 60.106 55.000 15.36 15.36 44.20 3.41
5096 5337 1.048601 GGGTCACCTGACTGAGTCAA 58.951 55.000 16.94 0.00 42.26 3.18
5097 5338 1.270358 GGGTCACCTGACTGAGTCAAC 60.270 57.143 16.94 11.29 42.26 3.18
5098 5339 1.412710 GGTCACCTGACTGAGTCAACA 59.587 52.381 16.94 0.00 42.26 3.33
5099 5340 2.158957 GGTCACCTGACTGAGTCAACAA 60.159 50.000 16.94 0.00 42.26 2.83
5100 5341 3.495100 GGTCACCTGACTGAGTCAACAAT 60.495 47.826 16.94 0.00 42.26 2.71
5101 5342 4.130118 GTCACCTGACTGAGTCAACAATT 58.870 43.478 16.94 0.00 42.26 2.32
5102 5343 4.576463 GTCACCTGACTGAGTCAACAATTT 59.424 41.667 16.94 0.00 42.26 1.82
5103 5344 4.816385 TCACCTGACTGAGTCAACAATTTC 59.184 41.667 16.94 0.00 42.26 2.17
5104 5345 4.818546 CACCTGACTGAGTCAACAATTTCT 59.181 41.667 16.94 0.00 42.26 2.52
5105 5346 5.049818 CACCTGACTGAGTCAACAATTTCTC 60.050 44.000 16.94 0.00 42.26 2.87
5106 5347 5.059161 CCTGACTGAGTCAACAATTTCTCA 58.941 41.667 16.94 0.00 42.26 3.27
5107 5348 5.528690 CCTGACTGAGTCAACAATTTCTCAA 59.471 40.000 16.94 0.00 42.26 3.02
5108 5349 6.038603 CCTGACTGAGTCAACAATTTCTCAAA 59.961 38.462 16.94 0.00 42.26 2.69
5109 5350 7.019774 TGACTGAGTCAACAATTTCTCAAAG 57.980 36.000 13.74 0.00 39.78 2.77
5110 5351 5.825507 ACTGAGTCAACAATTTCTCAAAGC 58.174 37.500 0.00 0.00 36.67 3.51
5111 5352 5.591877 ACTGAGTCAACAATTTCTCAAAGCT 59.408 36.000 0.00 0.00 36.67 3.74
5112 5353 6.064846 TGAGTCAACAATTTCTCAAAGCTC 57.935 37.500 0.00 0.00 34.61 4.09
5113 5354 5.824624 TGAGTCAACAATTTCTCAAAGCTCT 59.175 36.000 0.00 0.00 34.61 4.09
5114 5355 6.017605 TGAGTCAACAATTTCTCAAAGCTCTC 60.018 38.462 0.00 0.00 34.61 3.20
5115 5356 5.049818 AGTCAACAATTTCTCAAAGCTCTCG 60.050 40.000 0.00 0.00 0.00 4.04
5116 5357 4.816385 TCAACAATTTCTCAAAGCTCTCGT 59.184 37.500 0.00 0.00 0.00 4.18
5117 5358 5.296780 TCAACAATTTCTCAAAGCTCTCGTT 59.703 36.000 0.00 0.00 0.00 3.85
5118 5359 5.349824 ACAATTTCTCAAAGCTCTCGTTC 57.650 39.130 0.00 0.00 0.00 3.95
5119 5360 4.816385 ACAATTTCTCAAAGCTCTCGTTCA 59.184 37.500 0.00 0.00 0.00 3.18
5120 5361 5.296780 ACAATTTCTCAAAGCTCTCGTTCAA 59.703 36.000 0.00 0.00 0.00 2.69
5121 5362 6.016777 ACAATTTCTCAAAGCTCTCGTTCAAT 60.017 34.615 0.00 0.00 0.00 2.57
5122 5363 6.566197 ATTTCTCAAAGCTCTCGTTCAATT 57.434 33.333 0.00 0.00 0.00 2.32
5123 5364 5.597813 TTCTCAAAGCTCTCGTTCAATTC 57.402 39.130 0.00 0.00 0.00 2.17
5124 5365 4.887748 TCTCAAAGCTCTCGTTCAATTCT 58.112 39.130 0.00 0.00 0.00 2.40
5125 5366 5.300752 TCTCAAAGCTCTCGTTCAATTCTT 58.699 37.500 0.00 0.00 0.00 2.52
5126 5367 5.760253 TCTCAAAGCTCTCGTTCAATTCTTT 59.240 36.000 0.00 0.00 0.00 2.52
5127 5368 5.751680 TCAAAGCTCTCGTTCAATTCTTTG 58.248 37.500 0.00 0.00 39.83 2.77
5128 5369 5.527214 TCAAAGCTCTCGTTCAATTCTTTGA 59.473 36.000 9.57 9.57 42.88 2.69
5129 5370 6.205464 TCAAAGCTCTCGTTCAATTCTTTGAT 59.795 34.615 9.57 0.00 41.34 2.57
5130 5371 7.387673 TCAAAGCTCTCGTTCAATTCTTTGATA 59.612 33.333 9.57 0.00 41.34 2.15
5131 5372 6.654793 AGCTCTCGTTCAATTCTTTGATAC 57.345 37.500 0.00 0.00 41.38 2.24
5132 5373 6.402222 AGCTCTCGTTCAATTCTTTGATACT 58.598 36.000 0.00 0.00 41.38 2.12
5133 5374 7.548097 AGCTCTCGTTCAATTCTTTGATACTA 58.452 34.615 0.00 0.00 41.38 1.82
5134 5375 8.200792 AGCTCTCGTTCAATTCTTTGATACTAT 58.799 33.333 0.00 0.00 41.38 2.12
5135 5376 9.464714 GCTCTCGTTCAATTCTTTGATACTATA 57.535 33.333 0.00 0.00 41.38 1.31
5168 5409 5.104693 TGGTCTTCAGTTTAGAACTTGGTCA 60.105 40.000 0.00 0.00 40.46 4.02
5169 5410 5.998363 GGTCTTCAGTTTAGAACTTGGTCAT 59.002 40.000 0.00 0.00 40.46 3.06
5193 5434 6.654959 TCTGATTTTGACCGGACCAATAATA 58.345 36.000 9.46 0.00 0.00 0.98
5201 5442 5.600898 TGACCGGACCAATAATATCTCAAGA 59.399 40.000 9.46 0.00 0.00 3.02
5203 5444 6.525629 ACCGGACCAATAATATCTCAAGAAG 58.474 40.000 9.46 0.00 0.00 2.85
5216 5457 9.985730 AATATCTCAAGAAGCTCTCTCATTTAG 57.014 33.333 0.00 0.00 31.02 1.85
5222 5463 9.950496 TCAAGAAGCTCTCTCATTTAGTTATTT 57.050 29.630 0.00 0.00 31.02 1.40
5256 5497 8.061304 TCATCCTATTCCCTAATTTTGAAGCTT 58.939 33.333 0.00 0.00 0.00 3.74
5360 5601 4.881850 CCAACCGGCTAGAAAAACATATCT 59.118 41.667 0.00 0.00 0.00 1.98
5382 5623 1.602237 CCGTGCACCCTCTTACCAT 59.398 57.895 12.15 0.00 0.00 3.55
5388 5629 3.031736 TGCACCCTCTTACCATCTAGAC 58.968 50.000 0.00 0.00 0.00 2.59
5475 5921 3.769300 AGAGCCAAAAATATCAACACCCC 59.231 43.478 0.00 0.00 0.00 4.95
5476 5922 3.513515 GAGCCAAAAATATCAACACCCCA 59.486 43.478 0.00 0.00 0.00 4.96
5478 5924 4.000325 GCCAAAAATATCAACACCCCAAC 59.000 43.478 0.00 0.00 0.00 3.77
5670 6118 4.269183 TCACAATCTCAACAACACCAACT 58.731 39.130 0.00 0.00 0.00 3.16
5671 6119 5.432645 TCACAATCTCAACAACACCAACTA 58.567 37.500 0.00 0.00 0.00 2.24
5674 6122 3.530265 TCTCAACAACACCAACTACGT 57.470 42.857 0.00 0.00 0.00 3.57
5682 6130 2.762745 ACACCAACTACGTAGCAAAGG 58.237 47.619 22.40 19.09 0.00 3.11
5701 6149 2.919494 GCGCCCAACCCTTCAAGTG 61.919 63.158 0.00 0.00 0.00 3.16
5702 6150 1.228124 CGCCCAACCCTTCAAGTGA 60.228 57.895 0.00 0.00 0.00 3.41
5703 6151 0.609131 CGCCCAACCCTTCAAGTGAT 60.609 55.000 0.00 0.00 0.00 3.06
5704 6152 1.632589 GCCCAACCCTTCAAGTGATT 58.367 50.000 0.00 0.00 0.00 2.57
5705 6153 1.546029 GCCCAACCCTTCAAGTGATTC 59.454 52.381 0.00 0.00 0.00 2.52
5706 6154 2.171003 CCCAACCCTTCAAGTGATTCC 58.829 52.381 0.00 0.00 0.00 3.01
5707 6155 2.225117 CCCAACCCTTCAAGTGATTCCT 60.225 50.000 0.00 0.00 0.00 3.36
5708 6156 2.821969 CCAACCCTTCAAGTGATTCCTG 59.178 50.000 0.00 0.00 0.00 3.86
5709 6157 3.498481 CCAACCCTTCAAGTGATTCCTGA 60.498 47.826 0.00 0.00 0.00 3.86
5710 6158 4.144297 CAACCCTTCAAGTGATTCCTGAA 58.856 43.478 0.00 0.00 0.00 3.02
5711 6159 4.664688 ACCCTTCAAGTGATTCCTGAAT 57.335 40.909 0.00 0.00 0.00 2.57
5712 6160 4.593956 ACCCTTCAAGTGATTCCTGAATC 58.406 43.478 11.99 11.99 45.55 2.52
5713 6161 4.290722 ACCCTTCAAGTGATTCCTGAATCT 59.709 41.667 18.00 0.00 45.55 2.40
5714 6162 5.488919 ACCCTTCAAGTGATTCCTGAATCTA 59.511 40.000 18.00 5.13 45.55 1.98
5715 6163 6.054295 CCCTTCAAGTGATTCCTGAATCTAG 58.946 44.000 18.00 7.78 45.55 2.43
5716 6164 6.352565 CCCTTCAAGTGATTCCTGAATCTAGT 60.353 42.308 18.00 7.35 45.55 2.57
5717 6165 7.108847 CCTTCAAGTGATTCCTGAATCTAGTT 58.891 38.462 18.00 11.59 45.55 2.24
5718 6166 7.609532 CCTTCAAGTGATTCCTGAATCTAGTTT 59.390 37.037 18.00 7.01 45.55 2.66
5719 6167 7.912056 TCAAGTGATTCCTGAATCTAGTTTG 57.088 36.000 18.00 15.39 45.55 2.93
5720 6168 7.679783 TCAAGTGATTCCTGAATCTAGTTTGA 58.320 34.615 18.00 16.80 45.55 2.69
5721 6169 7.821359 TCAAGTGATTCCTGAATCTAGTTTGAG 59.179 37.037 18.00 0.00 45.55 3.02
5722 6170 6.648192 AGTGATTCCTGAATCTAGTTTGAGG 58.352 40.000 18.00 11.65 45.55 3.86
5723 6171 5.819901 GTGATTCCTGAATCTAGTTTGAGGG 59.180 44.000 16.26 5.01 45.55 4.30
5724 6172 4.844349 TTCCTGAATCTAGTTTGAGGGG 57.156 45.455 16.26 0.00 0.00 4.79
5725 6173 3.803340 TCCTGAATCTAGTTTGAGGGGT 58.197 45.455 16.26 0.00 0.00 4.95
5726 6174 3.775316 TCCTGAATCTAGTTTGAGGGGTC 59.225 47.826 16.26 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 3.000819 ATGGCCCGTCGAGACCAA 61.001 61.111 0.00 0.00 35.41 3.67
105 114 2.742116 GGGATACAAGCCGGCTGGA 61.742 63.158 37.65 24.17 35.76 3.86
137 146 0.807667 CCACTCTTCGATGGCTTCCG 60.808 60.000 0.00 0.00 0.00 4.30
138 147 0.537188 TCCACTCTTCGATGGCTTCC 59.463 55.000 0.00 0.00 35.81 3.46
139 148 1.478510 TCTCCACTCTTCGATGGCTTC 59.521 52.381 0.00 0.00 35.81 3.86
140 149 1.561643 TCTCCACTCTTCGATGGCTT 58.438 50.000 0.00 0.00 35.81 4.35
141 150 1.561643 TTCTCCACTCTTCGATGGCT 58.438 50.000 0.00 0.00 35.81 4.75
142 151 2.386661 TTTCTCCACTCTTCGATGGC 57.613 50.000 0.00 0.00 35.81 4.40
143 152 4.507710 TCATTTTCTCCACTCTTCGATGG 58.492 43.478 0.00 0.00 37.32 3.51
147 176 5.064452 CCTTCATCATTTTCTCCACTCTTCG 59.936 44.000 0.00 0.00 0.00 3.79
197 227 4.228097 CGCTGGGCAAGAATCGCG 62.228 66.667 0.00 0.00 34.50 5.87
203 238 1.220749 GGTCATACGCTGGGCAAGA 59.779 57.895 0.00 0.00 0.00 3.02
204 239 0.811616 GAGGTCATACGCTGGGCAAG 60.812 60.000 0.00 0.00 0.00 4.01
205 240 1.220749 GAGGTCATACGCTGGGCAA 59.779 57.895 0.00 0.00 0.00 4.52
206 241 2.900273 GAGGTCATACGCTGGGCA 59.100 61.111 0.00 0.00 0.00 5.36
216 251 4.704965 GCCCTCTATTTAAACGAGGTCAT 58.295 43.478 23.59 0.00 42.17 3.06
308 343 1.578206 GCGTGGAAGCTGAGAAACCC 61.578 60.000 0.00 0.00 0.00 4.11
352 389 1.934220 CTGAACACGCCTCCTCGCTA 61.934 60.000 0.00 0.00 0.00 4.26
399 437 4.728102 ATGGAAACGGCGCGTCGA 62.728 61.111 41.68 18.32 39.99 4.20
434 473 1.296715 GGCTCAGGACGGACACAAT 59.703 57.895 0.00 0.00 0.00 2.71
507 547 2.051345 CACACACTTTTCGCCCGC 60.051 61.111 0.00 0.00 0.00 6.13
567 624 1.757340 GGGAGTCCGAACCGATCCT 60.757 63.158 2.26 0.00 0.00 3.24
576 633 1.477685 GGAGGTTTGTGGGAGTCCGA 61.478 60.000 2.26 0.00 35.24 4.55
636 694 1.025113 TGTGTCGGTTTGCGGAACAA 61.025 50.000 0.00 0.00 40.13 2.83
646 704 4.028131 TCCAATATAGACCTGTGTCGGTT 58.972 43.478 0.00 0.00 46.51 4.44
689 747 4.752879 CAACCATCCGGACCGCGT 62.753 66.667 6.12 0.00 35.59 6.01
709 767 2.234908 CAATCCGGACTCTCAAACCTCT 59.765 50.000 6.12 0.00 0.00 3.69
720 778 1.207791 AGGCATCTTCAATCCGGACT 58.792 50.000 6.12 0.00 0.00 3.85
727 785 9.342308 TCTCGAAATATTAAAGGCATCTTCAAT 57.658 29.630 0.00 0.00 31.82 2.57
731 789 9.956720 CAAATCTCGAAATATTAAAGGCATCTT 57.043 29.630 0.00 0.00 34.07 2.40
739 797 9.109393 CTGACCCTCAAATCTCGAAATATTAAA 57.891 33.333 0.00 0.00 0.00 1.52
753 811 0.250513 GGCGTCTCTGACCCTCAAAT 59.749 55.000 0.00 0.00 0.00 2.32
754 812 1.671742 GGCGTCTCTGACCCTCAAA 59.328 57.895 0.00 0.00 0.00 2.69
755 813 2.283529 GGGCGTCTCTGACCCTCAA 61.284 63.158 0.00 0.00 40.75 3.02
756 814 2.680352 GGGCGTCTCTGACCCTCA 60.680 66.667 0.00 0.00 40.75 3.86
759 817 0.831307 ATTAAGGGCGTCTCTGACCC 59.169 55.000 0.00 0.00 44.62 4.46
763 821 3.184581 GCGAAATATTAAGGGCGTCTCTG 59.815 47.826 0.00 0.00 0.00 3.35
769 827 4.201589 CGTATGAGCGAAATATTAAGGGCG 60.202 45.833 0.00 0.00 0.00 6.13
776 834 3.728845 ACTGGCGTATGAGCGAAATATT 58.271 40.909 0.00 0.00 38.18 1.28
779 837 2.882927 TACTGGCGTATGAGCGAAAT 57.117 45.000 0.00 0.00 38.18 2.17
780 838 2.658373 TTACTGGCGTATGAGCGAAA 57.342 45.000 0.00 0.00 38.18 3.46
781 839 2.658373 TTTACTGGCGTATGAGCGAA 57.342 45.000 0.00 0.00 38.18 4.70
782 840 2.658373 TTTTACTGGCGTATGAGCGA 57.342 45.000 0.00 0.00 38.18 4.93
801 859 5.560966 ATCCGTATGAGCGAAATGTTTTT 57.439 34.783 0.00 0.00 0.00 1.94
802 860 5.156804 GATCCGTATGAGCGAAATGTTTT 57.843 39.130 0.00 0.00 0.00 2.43
803 861 4.795970 GATCCGTATGAGCGAAATGTTT 57.204 40.909 0.00 0.00 0.00 2.83
855 913 6.388259 TTCGCACTTTTTGTTCTCTTTTTG 57.612 33.333 0.00 0.00 0.00 2.44
861 919 6.401581 CCTCTAGATTCGCACTTTTTGTTCTC 60.402 42.308 0.00 0.00 0.00 2.87
1084 1142 1.045407 GTACCGATCCATGGCTGGTA 58.955 55.000 19.64 19.64 43.61 3.25
1275 1333 0.456312 GAGGATACGGCGCCTATTCG 60.456 60.000 26.68 13.53 46.39 3.34
1298 1356 2.743752 CGTGCCGCCACAAGATCTG 61.744 63.158 0.00 0.00 42.17 2.90
1305 1363 0.814410 TTTTAAGACGTGCCGCCACA 60.814 50.000 0.00 0.00 42.17 4.17
1346 1404 1.204146 GCTGTATGGGGTCAGGAAGA 58.796 55.000 0.00 0.00 32.94 2.87
1376 1434 0.814010 GCCGGCCGATAATCAACAGT 60.814 55.000 30.73 0.00 0.00 3.55
1378 1436 1.525077 GGCCGGCCGATAATCAACA 60.525 57.895 33.60 0.00 0.00 3.33
1393 1451 3.328382 TTGCCGTATATATCAGTGGCC 57.672 47.619 0.00 0.00 41.77 5.36
1521 1584 9.694137 AAATCCATTACTCGCTAACTTAGATAC 57.306 33.333 0.00 0.00 0.00 2.24
1547 1610 0.747852 TGCTATGTCCGCATTCCGTA 59.252 50.000 0.00 0.00 36.58 4.02
1556 1619 4.732285 GGACAACATAATGCTATGTCCG 57.268 45.455 7.42 6.35 46.08 4.79
1626 1689 3.081804 CCAAAACTACCACCTGTCATCC 58.918 50.000 0.00 0.00 0.00 3.51
1631 1694 3.073946 AGCATACCAAAACTACCACCTGT 59.926 43.478 0.00 0.00 0.00 4.00
1755 1821 7.404671 AGGGACGCTGAATTTATTGTATTTT 57.595 32.000 0.00 0.00 0.00 1.82
1782 1849 2.352503 AATGCCAATTTGCACTCGAC 57.647 45.000 6.32 0.00 45.48 4.20
1807 1874 6.882610 TTTCAGTGCATTCAGAGTAAACAT 57.117 33.333 0.00 0.00 0.00 2.71
1867 1946 3.703556 CCAGACTGATGACTCATGTACCT 59.296 47.826 3.32 0.00 0.00 3.08
1895 1974 4.811908 TGCCAACATGATTGAATCTGTTG 58.188 39.130 26.03 26.03 42.00 3.33
1963 2045 4.771577 TCTCATTTCCTTTTAATGGCAGCA 59.228 37.500 0.00 0.00 34.51 4.41
1964 2046 5.329035 TCTCATTTCCTTTTAATGGCAGC 57.671 39.130 0.00 0.00 34.51 5.25
1965 2047 7.549839 TCAATCTCATTTCCTTTTAATGGCAG 58.450 34.615 0.00 0.00 34.51 4.85
2007 2089 1.069978 GATAAGACAGGGCAGGAGAGC 59.930 57.143 0.00 0.00 0.00 4.09
2008 2090 2.676748 AGATAAGACAGGGCAGGAGAG 58.323 52.381 0.00 0.00 0.00 3.20
2010 2092 3.922171 AAAGATAAGACAGGGCAGGAG 57.078 47.619 0.00 0.00 0.00 3.69
2075 2157 6.183360 GGCAGCATTACAGAAACAATATCAGT 60.183 38.462 0.00 0.00 0.00 3.41
2103 2220 3.365976 TGCAAAACAGCAAAGCCTG 57.634 47.368 0.00 0.00 42.46 4.85
2111 2228 4.670735 GCATCCATGAAAATGCAAAACAGC 60.671 41.667 17.48 0.00 45.97 4.40
2112 2229 4.965062 GCATCCATGAAAATGCAAAACAG 58.035 39.130 17.48 0.00 45.97 3.16
2119 2236 3.800506 GCAAGTAGCATCCATGAAAATGC 59.199 43.478 15.64 15.64 46.84 3.56
2152 2269 2.295909 GCTGTAACTTGTGGAAATGGCA 59.704 45.455 0.00 0.00 0.00 4.92
2161 2278 3.632145 ACAAAAGAGGGCTGTAACTTGTG 59.368 43.478 0.00 0.00 34.80 3.33
2162 2279 3.898482 ACAAAAGAGGGCTGTAACTTGT 58.102 40.909 0.00 0.00 0.00 3.16
2170 2287 2.554032 CACCTACAACAAAAGAGGGCTG 59.446 50.000 0.00 0.00 33.02 4.85
2210 2327 8.901748 CAATTGTTACAAAATAAACAGACTCCG 58.098 33.333 0.66 0.00 36.96 4.63
2238 2355 2.494530 GGCACGCCCCAACTTTGAA 61.495 57.895 0.00 0.00 0.00 2.69
2251 2368 2.440539 ACTTTAGACTGAGTGGCACG 57.559 50.000 12.71 0.15 0.00 5.34
2286 2403 3.831323 CATGGATGTGTGGCCCTTATAA 58.169 45.455 0.00 0.00 0.00 0.98
2289 2406 0.395586 GCATGGATGTGTGGCCCTTA 60.396 55.000 0.00 0.00 0.00 2.69
2308 2425 6.418101 TCCTCCTTGATACAAAGAAGGATTG 58.582 40.000 0.00 0.00 43.41 2.67
2320 2437 4.649692 ACATGATGCATCCTCCTTGATAC 58.350 43.478 23.67 0.00 0.00 2.24
2493 2612 9.612620 CTGATTTGAACAACTTATAAGGTTCAC 57.387 33.333 24.89 18.15 46.44 3.18
2526 2645 5.163416 CCTTCAACACAATTTCTTTCACCCT 60.163 40.000 0.00 0.00 0.00 4.34
2588 2707 4.759782 ACAGACCAACCTTTATGATCTCG 58.240 43.478 0.00 0.00 0.00 4.04
2654 2773 6.798427 TTCTGTGATTAGATGGAGCTAGTT 57.202 37.500 0.00 0.00 0.00 2.24
3090 3209 1.200020 GGCTGGTGCTGTTGTTGATAC 59.800 52.381 0.00 0.00 39.59 2.24
3193 3312 6.847792 CACGTACATATGAATCTTCAATGCAC 59.152 38.462 10.38 3.60 41.13 4.57
3418 3537 0.551377 TTTGGCCATACCCTCCCTGA 60.551 55.000 6.09 0.00 37.83 3.86
3430 3549 3.962557 CCACCTTGGTTTTGGCCA 58.037 55.556 0.00 0.00 36.62 5.36
3472 3591 2.531177 ATCCCCCATATCCACCTTGA 57.469 50.000 0.00 0.00 0.00 3.02
3645 3768 4.403113 ACACCCCAACTTTTTGTAACGATT 59.597 37.500 0.00 0.00 0.00 3.34
3651 3776 5.262804 AGTGTAACACCCCAACTTTTTGTA 58.737 37.500 0.00 0.00 41.43 2.41
3652 3777 4.090819 AGTGTAACACCCCAACTTTTTGT 58.909 39.130 0.00 0.00 41.43 2.83
3653 3778 4.729227 AGTGTAACACCCCAACTTTTTG 57.271 40.909 0.00 0.00 41.43 2.44
3654 3779 7.061688 TGTATAGTGTAACACCCCAACTTTTT 58.938 34.615 0.00 0.00 41.43 1.94
3655 3780 6.603224 TGTATAGTGTAACACCCCAACTTTT 58.397 36.000 0.00 0.00 41.43 2.27
3656 3781 6.190346 TGTATAGTGTAACACCCCAACTTT 57.810 37.500 0.00 0.00 41.43 2.66
3657 3782 5.829062 TGTATAGTGTAACACCCCAACTT 57.171 39.130 0.00 0.00 41.43 2.66
3658 3783 6.441284 TGTATGTATAGTGTAACACCCCAACT 59.559 38.462 0.00 0.00 41.43 3.16
3659 3784 6.536224 GTGTATGTATAGTGTAACACCCCAAC 59.464 42.308 0.00 0.00 41.43 3.77
3660 3785 6.212993 TGTGTATGTATAGTGTAACACCCCAA 59.787 38.462 0.00 0.00 41.43 4.12
3661 3786 5.720520 TGTGTATGTATAGTGTAACACCCCA 59.279 40.000 0.00 0.00 41.43 4.96
3662 3787 6.224665 TGTGTATGTATAGTGTAACACCCC 57.775 41.667 0.00 0.00 41.43 4.95
3663 3788 7.325694 AGTTGTGTATGTATAGTGTAACACCC 58.674 38.462 0.00 0.00 41.43 4.61
3711 3836 2.195727 TCCAGCCACCATTATCTGACA 58.804 47.619 0.00 0.00 0.00 3.58
3805 3930 7.712639 CCTAAATAGACTGTATGTTGCTGTGAT 59.287 37.037 0.00 0.00 0.00 3.06
3806 3931 7.041721 CCTAAATAGACTGTATGTTGCTGTGA 58.958 38.462 0.00 0.00 0.00 3.58
3807 3932 6.238211 GCCTAAATAGACTGTATGTTGCTGTG 60.238 42.308 0.00 0.00 0.00 3.66
3808 3933 5.817816 GCCTAAATAGACTGTATGTTGCTGT 59.182 40.000 0.00 0.00 0.00 4.40
3856 3981 4.526970 AGTAAATGCACAAGATAGGTGGG 58.473 43.478 0.00 0.00 36.76 4.61
3928 4106 4.225942 ACTGAAGTTCTGCCATAATGGAGA 59.774 41.667 9.48 0.00 40.96 3.71
3956 4134 4.288531 CCTGTTCTATCGTCACGAATACC 58.711 47.826 2.76 0.00 39.99 2.73
3962 4140 2.649331 AACCCTGTTCTATCGTCACG 57.351 50.000 0.00 0.00 0.00 4.35
4122 4341 6.851609 TGGAAAATAATCACAGTACACATGC 58.148 36.000 0.00 0.00 0.00 4.06
4169 4389 8.800972 GCACATACAGTTATTGTTTCAATCATG 58.199 33.333 0.00 0.00 41.29 3.07
4206 4426 8.589338 AGGATAGCGATCATTTAAACTGTATCT 58.411 33.333 9.15 0.00 33.27 1.98
4210 4430 5.760253 CCAGGATAGCGATCATTTAAACTGT 59.240 40.000 9.15 0.00 33.27 3.55
4253 4474 7.470289 ACTAAATCTATACAAGCAAGCTTCG 57.530 36.000 3.97 3.83 33.42 3.79
4255 4476 9.892130 ACTTACTAAATCTATACAAGCAAGCTT 57.108 29.630 0.59 0.59 36.60 3.74
4276 4497 8.557029 ACAGTGCTGTATTGTTTAAAGACTTAC 58.443 33.333 2.62 0.00 42.90 2.34
4300 4521 4.801330 AGACAACCGAATCTGATACACA 57.199 40.909 0.00 0.00 0.00 3.72
4301 4522 4.929808 ACAAGACAACCGAATCTGATACAC 59.070 41.667 0.00 0.00 0.00 2.90
4310 4531 2.948979 TGCAAGAACAAGACAACCGAAT 59.051 40.909 0.00 0.00 0.00 3.34
4335 4556 8.359875 TCCATGATTGATTGTTTAAAGGCTTA 57.640 30.769 0.00 0.00 0.00 3.09
4339 4560 9.309516 CAGATTCCATGATTGATTGTTTAAAGG 57.690 33.333 0.00 0.00 0.00 3.11
4342 4563 8.469200 GGACAGATTCCATGATTGATTGTTTAA 58.531 33.333 0.00 0.00 45.10 1.52
4479 4700 3.449737 TGACCTAATAGTTCTGGTTCCCG 59.550 47.826 0.00 0.00 32.30 5.14
4482 4703 7.707035 CACTATGTGACCTAATAGTTCTGGTTC 59.293 40.741 0.00 0.00 37.48 3.62
4527 4748 0.803740 ACGCGTACCTTCTGTCTCTC 59.196 55.000 11.67 0.00 0.00 3.20
4529 4750 1.199558 AGAACGCGTACCTTCTGTCTC 59.800 52.381 14.46 1.40 0.00 3.36
4531 4752 1.337821 CAGAACGCGTACCTTCTGTC 58.662 55.000 23.96 11.88 38.97 3.51
4532 4753 3.491581 CAGAACGCGTACCTTCTGT 57.508 52.632 23.96 3.09 38.97 3.41
4533 4754 1.060713 CACAGAACGCGTACCTTCTG 58.939 55.000 28.23 28.23 46.04 3.02
4534 4755 0.956633 TCACAGAACGCGTACCTTCT 59.043 50.000 14.46 9.12 0.00 2.85
4535 4756 1.774639 TTCACAGAACGCGTACCTTC 58.225 50.000 14.46 6.32 0.00 3.46
4571 4796 1.408422 GGTTCACAATGAAACAGCGC 58.592 50.000 0.00 0.00 43.31 5.92
4636 4861 3.129287 CACAGAATGGAAGCAATGGTACC 59.871 47.826 4.43 4.43 43.62 3.34
4743 4968 1.888391 GCTAGGAAAGGCAAAGCTGGT 60.888 52.381 0.00 0.00 0.00 4.00
4751 4976 0.035056 GCAAGGAGCTAGGAAAGGCA 60.035 55.000 0.00 0.00 41.15 4.75
4752 4977 0.749818 GGCAAGGAGCTAGGAAAGGC 60.750 60.000 0.00 0.00 44.79 4.35
4755 4980 2.200081 AGATGGCAAGGAGCTAGGAAA 58.800 47.619 0.00 0.00 44.79 3.13
4762 4987 0.107643 GGGAGTAGATGGCAAGGAGC 59.892 60.000 0.00 0.00 44.65 4.70
4769 4994 1.614413 CTAACGGAGGGAGTAGATGGC 59.386 57.143 0.00 0.00 0.00 4.40
4777 5002 3.497332 TGGATGTATCTAACGGAGGGAG 58.503 50.000 0.00 0.00 0.00 4.30
4778 5003 3.605726 TGGATGTATCTAACGGAGGGA 57.394 47.619 0.00 0.00 0.00 4.20
4779 5004 4.891992 AATGGATGTATCTAACGGAGGG 57.108 45.455 0.00 0.00 0.00 4.30
4780 5005 5.238583 GGAAATGGATGTATCTAACGGAGG 58.761 45.833 0.00 0.00 0.00 4.30
4781 5006 4.923871 CGGAAATGGATGTATCTAACGGAG 59.076 45.833 0.00 0.00 0.00 4.63
4782 5007 4.585581 TCGGAAATGGATGTATCTAACGGA 59.414 41.667 0.00 0.00 0.00 4.69
4784 5009 5.629849 GTCTCGGAAATGGATGTATCTAACG 59.370 44.000 0.00 0.00 0.00 3.18
4785 5010 6.513180 TGTCTCGGAAATGGATGTATCTAAC 58.487 40.000 0.00 0.00 0.00 2.34
4787 5012 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4788 5013 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4789 5014 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4790 5015 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4791 5016 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4792 5017 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4793 5018 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4794 5019 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4795 5020 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4796 5021 4.941263 TGGAATTACTTGTCTCGGAAATGG 59.059 41.667 0.00 0.00 0.00 3.16
4797 5022 6.494893 TTGGAATTACTTGTCTCGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
4799 5024 5.049954 CGTTTGGAATTACTTGTCTCGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
4800 5025 4.449743 CGTTTGGAATTACTTGTCTCGGAA 59.550 41.667 0.00 0.00 0.00 4.30
4801 5026 3.991773 CGTTTGGAATTACTTGTCTCGGA 59.008 43.478 0.00 0.00 0.00 4.55
4802 5027 3.124636 CCGTTTGGAATTACTTGTCTCGG 59.875 47.826 0.00 0.00 37.49 4.63
4803 5028 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
4804 5029 4.392138 CCTCCGTTTGGAATTACTTGTCTC 59.608 45.833 0.00 0.00 45.87 3.36
4806 5031 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
4807 5032 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
4808 5033 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
4809 5034 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
4810 5035 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
4811 5036 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
4812 5037 4.098894 ACTACTCCCTCCGTTTGGAATTA 58.901 43.478 0.00 0.00 45.87 1.40
4813 5038 2.910977 ACTACTCCCTCCGTTTGGAATT 59.089 45.455 0.00 0.00 45.87 2.17
4814 5039 2.547990 ACTACTCCCTCCGTTTGGAAT 58.452 47.619 0.00 0.00 45.87 3.01
4815 5040 2.019807 ACTACTCCCTCCGTTTGGAA 57.980 50.000 0.00 0.00 45.87 3.53
4816 5041 2.905415 TACTACTCCCTCCGTTTGGA 57.095 50.000 0.00 0.00 43.88 3.53
4817 5042 2.483188 GCATACTACTCCCTCCGTTTGG 60.483 54.545 0.00 0.00 0.00 3.28
4818 5043 2.431057 AGCATACTACTCCCTCCGTTTG 59.569 50.000 0.00 0.00 0.00 2.93
4819 5044 2.748388 AGCATACTACTCCCTCCGTTT 58.252 47.619 0.00 0.00 0.00 3.60
4820 5045 2.456073 AGCATACTACTCCCTCCGTT 57.544 50.000 0.00 0.00 0.00 4.44
4821 5046 3.810721 ATAGCATACTACTCCCTCCGT 57.189 47.619 0.00 0.00 0.00 4.69
4822 5047 6.585695 TTTTATAGCATACTACTCCCTCCG 57.414 41.667 0.00 0.00 0.00 4.63
4846 5071 2.397044 TTCCCAGGCCAAACAATCTT 57.603 45.000 5.01 0.00 0.00 2.40
4847 5072 2.250924 CTTTCCCAGGCCAAACAATCT 58.749 47.619 5.01 0.00 0.00 2.40
4850 5075 0.263172 TCCTTTCCCAGGCCAAACAA 59.737 50.000 5.01 0.00 43.55 2.83
4878 5103 0.895530 CTCTTCGCCCAGGTCAGTAA 59.104 55.000 0.00 0.00 0.00 2.24
4891 5116 6.252441 CAGTACATAAGCTTCAGTTCTCTTCG 59.748 42.308 0.00 0.00 0.00 3.79
4909 5135 5.190925 TGGGGCTATAGTTTTCACAGTACAT 59.809 40.000 0.84 0.00 0.00 2.29
4913 5139 4.650972 TTGGGGCTATAGTTTTCACAGT 57.349 40.909 0.84 0.00 0.00 3.55
4918 5144 3.630312 TGCGAATTGGGGCTATAGTTTTC 59.370 43.478 0.84 0.00 0.00 2.29
4929 5155 1.205417 AGCTGATTTTGCGAATTGGGG 59.795 47.619 0.00 0.00 35.28 4.96
4936 5162 3.084039 AGATTTCCAGCTGATTTTGCGA 58.916 40.909 17.39 0.00 35.28 5.10
4966 5207 2.506444 GGTCAGGGTCTATCGTAGAGG 58.494 57.143 0.00 0.00 43.63 3.69
5006 5247 1.403687 CCCGTGGCCTTTCCCAAAAA 61.404 55.000 3.32 0.00 36.46 1.94
5007 5248 1.834822 CCCGTGGCCTTTCCCAAAA 60.835 57.895 3.32 0.00 36.46 2.44
5008 5249 2.203567 CCCGTGGCCTTTCCCAAA 60.204 61.111 3.32 0.00 36.46 3.28
5009 5250 4.293671 CCCCGTGGCCTTTCCCAA 62.294 66.667 3.32 0.00 36.46 4.12
5019 5260 1.125093 TACCCAGATATGCCCCGTGG 61.125 60.000 0.00 0.00 0.00 4.94
5020 5261 0.762418 TTACCCAGATATGCCCCGTG 59.238 55.000 0.00 0.00 0.00 4.94
5021 5262 1.513858 TTTACCCAGATATGCCCCGT 58.486 50.000 0.00 0.00 0.00 5.28
5022 5263 2.649531 TTTTACCCAGATATGCCCCG 57.350 50.000 0.00 0.00 0.00 5.73
5039 5280 7.791029 ACACCTTAATTGATTGTGAGGTTTTT 58.209 30.769 6.93 0.00 35.43 1.94
5040 5281 7.360113 ACACCTTAATTGATTGTGAGGTTTT 57.640 32.000 6.93 0.00 35.43 2.43
5041 5282 6.976934 ACACCTTAATTGATTGTGAGGTTT 57.023 33.333 6.93 0.00 35.43 3.27
5042 5283 6.976934 AACACCTTAATTGATTGTGAGGTT 57.023 33.333 6.93 0.00 35.43 3.50
5043 5284 6.976934 AAACACCTTAATTGATTGTGAGGT 57.023 33.333 6.93 0.00 37.98 3.85
5044 5285 8.576442 AGTTAAACACCTTAATTGATTGTGAGG 58.424 33.333 6.93 0.00 32.14 3.86
5045 5286 9.398170 CAGTTAAACACCTTAATTGATTGTGAG 57.602 33.333 6.93 0.00 38.74 3.51
5046 5287 9.126151 TCAGTTAAACACCTTAATTGATTGTGA 57.874 29.630 6.93 0.00 39.80 3.58
5047 5288 9.743057 TTCAGTTAAACACCTTAATTGATTGTG 57.257 29.630 4.07 0.00 42.48 3.33
5052 5293 9.757227 CCAATTTCAGTTAAACACCTTAATTGA 57.243 29.630 0.00 0.03 41.74 2.57
5053 5294 8.987890 CCCAATTTCAGTTAAACACCTTAATTG 58.012 33.333 0.00 0.00 38.13 2.32
5054 5295 8.710239 ACCCAATTTCAGTTAAACACCTTAATT 58.290 29.630 0.00 0.00 32.14 1.40
5055 5296 8.257602 ACCCAATTTCAGTTAAACACCTTAAT 57.742 30.769 0.00 0.00 32.14 1.40
5056 5297 7.342284 TGACCCAATTTCAGTTAAACACCTTAA 59.658 33.333 0.00 0.00 0.00 1.85
5057 5298 6.834451 TGACCCAATTTCAGTTAAACACCTTA 59.166 34.615 0.00 0.00 0.00 2.69
5058 5299 5.659079 TGACCCAATTTCAGTTAAACACCTT 59.341 36.000 0.00 0.00 0.00 3.50
5059 5300 5.068591 GTGACCCAATTTCAGTTAAACACCT 59.931 40.000 0.00 0.00 0.00 4.00
5060 5301 5.286438 GTGACCCAATTTCAGTTAAACACC 58.714 41.667 0.00 0.00 0.00 4.16
5061 5302 5.068591 AGGTGACCCAATTTCAGTTAAACAC 59.931 40.000 0.00 0.00 0.00 3.32
5062 5303 5.068460 CAGGTGACCCAATTTCAGTTAAACA 59.932 40.000 0.00 0.00 0.00 2.83
5063 5304 5.300792 TCAGGTGACCCAATTTCAGTTAAAC 59.699 40.000 0.00 0.00 0.00 2.01
5064 5305 5.300792 GTCAGGTGACCCAATTTCAGTTAAA 59.699 40.000 0.00 0.00 39.07 1.52
5065 5306 4.825085 GTCAGGTGACCCAATTTCAGTTAA 59.175 41.667 0.00 0.00 39.07 2.01
5066 5307 4.104102 AGTCAGGTGACCCAATTTCAGTTA 59.896 41.667 6.50 0.00 45.85 2.24
5067 5308 3.117512 AGTCAGGTGACCCAATTTCAGTT 60.118 43.478 6.50 0.00 45.85 3.16
5068 5309 2.443255 AGTCAGGTGACCCAATTTCAGT 59.557 45.455 6.50 0.00 45.85 3.41
5069 5310 2.816087 CAGTCAGGTGACCCAATTTCAG 59.184 50.000 6.50 0.00 45.85 3.02
5070 5311 2.441375 TCAGTCAGGTGACCCAATTTCA 59.559 45.455 6.50 0.00 45.85 2.69
5071 5312 3.077359 CTCAGTCAGGTGACCCAATTTC 58.923 50.000 6.50 0.00 45.85 2.17
5072 5313 2.443255 ACTCAGTCAGGTGACCCAATTT 59.557 45.455 6.50 0.00 45.85 1.82
5073 5314 2.039084 GACTCAGTCAGGTGACCCAATT 59.961 50.000 0.00 0.00 45.85 2.32
5074 5315 1.625818 GACTCAGTCAGGTGACCCAAT 59.374 52.381 0.00 0.00 45.85 3.16
5075 5316 1.048601 GACTCAGTCAGGTGACCCAA 58.951 55.000 0.00 0.00 45.85 4.12
5076 5317 0.105709 TGACTCAGTCAGGTGACCCA 60.106 55.000 2.36 0.00 45.85 4.51
5077 5318 1.048601 TTGACTCAGTCAGGTGACCC 58.951 55.000 7.75 0.00 43.69 4.46
5078 5319 1.412710 TGTTGACTCAGTCAGGTGACC 59.587 52.381 7.75 0.00 43.69 4.02
5079 5320 2.890808 TGTTGACTCAGTCAGGTGAC 57.109 50.000 7.75 3.97 43.69 3.67
5080 5321 4.422073 AATTGTTGACTCAGTCAGGTGA 57.578 40.909 7.75 0.00 43.69 4.02
5081 5322 4.818546 AGAAATTGTTGACTCAGTCAGGTG 59.181 41.667 7.75 0.00 43.69 4.00
5082 5323 5.041191 AGAAATTGTTGACTCAGTCAGGT 57.959 39.130 7.75 0.00 43.69 4.00
5083 5324 5.059161 TGAGAAATTGTTGACTCAGTCAGG 58.941 41.667 7.75 0.00 43.69 3.86
5084 5325 6.609237 TTGAGAAATTGTTGACTCAGTCAG 57.391 37.500 7.75 0.00 43.69 3.51
5085 5326 6.458751 GCTTTGAGAAATTGTTGACTCAGTCA 60.459 38.462 2.36 2.36 41.09 3.41
5086 5327 5.911838 GCTTTGAGAAATTGTTGACTCAGTC 59.088 40.000 0.00 0.00 39.86 3.51
5087 5328 5.591877 AGCTTTGAGAAATTGTTGACTCAGT 59.408 36.000 0.00 0.00 39.86 3.41
5088 5329 6.017275 AGAGCTTTGAGAAATTGTTGACTCAG 60.017 38.462 0.00 0.00 39.86 3.35
5089 5330 5.824624 AGAGCTTTGAGAAATTGTTGACTCA 59.175 36.000 0.00 0.00 37.56 3.41
5090 5331 6.311055 AGAGCTTTGAGAAATTGTTGACTC 57.689 37.500 0.00 0.00 0.00 3.36
5091 5332 5.049818 CGAGAGCTTTGAGAAATTGTTGACT 60.050 40.000 0.00 0.00 0.00 3.41
5092 5333 5.142962 CGAGAGCTTTGAGAAATTGTTGAC 58.857 41.667 0.00 0.00 0.00 3.18
5093 5334 4.816385 ACGAGAGCTTTGAGAAATTGTTGA 59.184 37.500 0.00 0.00 0.00 3.18
5094 5335 5.100751 ACGAGAGCTTTGAGAAATTGTTG 57.899 39.130 0.00 0.00 0.00 3.33
5095 5336 5.296780 TGAACGAGAGCTTTGAGAAATTGTT 59.703 36.000 0.00 0.00 0.00 2.83
5096 5337 4.816385 TGAACGAGAGCTTTGAGAAATTGT 59.184 37.500 0.00 0.00 0.00 2.71
5097 5338 5.348418 TGAACGAGAGCTTTGAGAAATTG 57.652 39.130 0.00 0.00 0.00 2.32
5098 5339 6.566197 ATTGAACGAGAGCTTTGAGAAATT 57.434 33.333 0.00 0.00 0.00 1.82
5099 5340 6.429385 AGAATTGAACGAGAGCTTTGAGAAAT 59.571 34.615 0.00 0.00 0.00 2.17
5100 5341 5.760253 AGAATTGAACGAGAGCTTTGAGAAA 59.240 36.000 0.00 0.00 0.00 2.52
5101 5342 5.300752 AGAATTGAACGAGAGCTTTGAGAA 58.699 37.500 0.00 0.00 0.00 2.87
5102 5343 4.887748 AGAATTGAACGAGAGCTTTGAGA 58.112 39.130 0.00 0.00 0.00 3.27
5103 5344 5.604010 AAGAATTGAACGAGAGCTTTGAG 57.396 39.130 0.00 0.00 0.00 3.02
5104 5345 5.527214 TCAAAGAATTGAACGAGAGCTTTGA 59.473 36.000 0.00 0.00 44.07 2.69
5105 5346 5.751680 TCAAAGAATTGAACGAGAGCTTTG 58.248 37.500 0.00 0.00 42.47 2.77
5126 5367 9.416284 TGAAGACCACAATAGTGTATAGTATCA 57.584 33.333 0.00 0.88 44.39 2.15
5127 5368 9.900710 CTGAAGACCACAATAGTGTATAGTATC 57.099 37.037 0.00 0.00 44.39 2.24
5128 5369 9.422681 ACTGAAGACCACAATAGTGTATAGTAT 57.577 33.333 0.00 0.00 44.39 2.12
5129 5370 8.818622 ACTGAAGACCACAATAGTGTATAGTA 57.181 34.615 0.00 0.00 44.39 1.82
5130 5371 7.719871 ACTGAAGACCACAATAGTGTATAGT 57.280 36.000 0.00 0.00 44.39 2.12
5133 5374 8.812972 TCTAAACTGAAGACCACAATAGTGTAT 58.187 33.333 0.00 0.00 44.39 2.29
5134 5375 8.185506 TCTAAACTGAAGACCACAATAGTGTA 57.814 34.615 0.00 0.00 44.39 2.90
5135 5376 7.062749 TCTAAACTGAAGACCACAATAGTGT 57.937 36.000 0.00 0.00 44.39 3.55
5136 5377 7.657761 AGTTCTAAACTGAAGACCACAATAGTG 59.342 37.037 0.00 0.00 42.03 2.74
5137 5378 7.736893 AGTTCTAAACTGAAGACCACAATAGT 58.263 34.615 0.00 0.00 41.01 2.12
5138 5379 8.499162 CAAGTTCTAAACTGAAGACCACAATAG 58.501 37.037 0.00 0.00 41.91 1.73
5139 5380 7.444183 CCAAGTTCTAAACTGAAGACCACAATA 59.556 37.037 0.00 0.00 41.91 1.90
5140 5381 6.263168 CCAAGTTCTAAACTGAAGACCACAAT 59.737 38.462 0.00 0.00 41.91 2.71
5141 5382 5.588648 CCAAGTTCTAAACTGAAGACCACAA 59.411 40.000 0.00 0.00 41.91 3.33
5142 5383 5.123227 CCAAGTTCTAAACTGAAGACCACA 58.877 41.667 0.00 0.00 41.91 4.17
5143 5384 5.123936 ACCAAGTTCTAAACTGAAGACCAC 58.876 41.667 0.00 0.00 41.91 4.16
5144 5385 5.104693 TGACCAAGTTCTAAACTGAAGACCA 60.105 40.000 0.00 0.00 41.91 4.02
5153 5394 8.567948 TCAAAATCAGATGACCAAGTTCTAAAC 58.432 33.333 0.00 0.00 0.00 2.01
5168 5409 3.433306 TTGGTCCGGTCAAAATCAGAT 57.567 42.857 0.00 0.00 0.00 2.90
5169 5410 2.940994 TTGGTCCGGTCAAAATCAGA 57.059 45.000 0.00 0.00 0.00 3.27
5185 5426 8.366401 TGAGAGAGCTTCTTGAGATATTATTGG 58.634 37.037 0.00 0.00 35.87 3.16
5193 5434 7.422465 ACTAAATGAGAGAGCTTCTTGAGAT 57.578 36.000 0.00 0.00 35.87 2.75
5360 5601 1.078891 TAAGAGGGTGCACGGGGTA 59.921 57.895 11.45 0.00 0.00 3.69
5640 6088 7.492344 GGTGTTGTTGAGATTGTGAAGAAAAAT 59.508 33.333 0.00 0.00 0.00 1.82
5646 6094 4.898829 TGGTGTTGTTGAGATTGTGAAG 57.101 40.909 0.00 0.00 0.00 3.02
5651 6099 4.272504 ACGTAGTTGGTGTTGTTGAGATTG 59.727 41.667 0.00 0.00 37.78 2.67
5670 6118 2.125431 GGCGCCCTTTGCTACGTA 60.125 61.111 18.11 0.00 38.05 3.57
5674 6122 2.675075 GTTGGGCGCCCTTTGCTA 60.675 61.111 43.34 22.40 38.05 3.49
5682 6130 3.373565 CTTGAAGGGTTGGGCGCC 61.374 66.667 21.18 21.18 0.00 6.53
5701 6149 5.104318 ACCCCTCAAACTAGATTCAGGAATC 60.104 44.000 4.11 12.93 45.66 2.52
5702 6150 4.790790 ACCCCTCAAACTAGATTCAGGAAT 59.209 41.667 4.11 0.00 0.00 3.01
5703 6151 4.175962 ACCCCTCAAACTAGATTCAGGAA 58.824 43.478 4.11 0.00 0.00 3.36
5704 6152 3.775316 GACCCCTCAAACTAGATTCAGGA 59.225 47.826 4.11 0.00 0.00 3.86
5705 6153 4.143986 GACCCCTCAAACTAGATTCAGG 57.856 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.