Multiple sequence alignment - TraesCS4A01G020800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G020800 chr4A 100.000 4680 0 0 1 4680 14178214 14173535 0.000000e+00 8643.0
1 TraesCS4A01G020800 chr4B 87.965 1961 151 55 10 1930 566228208 566230123 0.000000e+00 2235.0
2 TraesCS4A01G020800 chr4B 91.917 1534 75 21 2503 4017 566231841 566233344 0.000000e+00 2100.0
3 TraesCS4A01G020800 chr4B 88.517 418 47 1 2089 2506 566231351 566231767 5.400000e-139 505.0
4 TraesCS4A01G020800 chr4B 83.459 133 16 5 2520 2647 566231363 566231494 8.230000e-23 119.0
5 TraesCS4A01G020800 chr4D 94.463 1192 46 9 749 1931 453042860 453044040 0.000000e+00 1818.0
6 TraesCS4A01G020800 chr4D 90.000 1400 89 21 2503 3892 453044724 453046082 0.000000e+00 1762.0
7 TraesCS4A01G020800 chr4D 83.165 790 81 31 1 755 453042061 453042833 0.000000e+00 675.0
8 TraesCS4A01G020800 chr4D 88.112 572 57 6 1938 2506 453044080 453044643 0.000000e+00 669.0
9 TraesCS4A01G020800 chr3A 96.547 666 23 0 4015 4680 631783001 631783666 0.000000e+00 1103.0
10 TraesCS4A01G020800 chr3A 96.547 666 23 0 4015 4680 730204226 730203561 0.000000e+00 1103.0
11 TraesCS4A01G020800 chr1A 96.246 666 25 0 4015 4680 504288092 504287427 0.000000e+00 1092.0
12 TraesCS4A01G020800 chr5B 90.671 686 38 16 4015 4677 513779401 513780083 0.000000e+00 889.0
13 TraesCS4A01G020800 chr5B 82.990 582 47 24 4111 4679 170619947 170620489 3.280000e-131 479.0
14 TraesCS4A01G020800 chr5B 84.286 490 41 13 4039 4504 545172144 545171667 3.320000e-121 446.0
15 TraesCS4A01G020800 chr5B 84.706 170 11 2 4519 4679 545170835 545170672 6.270000e-34 156.0
16 TraesCS4A01G020800 chrUn 90.276 689 42 15 4015 4680 354710684 354709998 0.000000e+00 878.0
17 TraesCS4A01G020800 chrUn 92.453 318 19 5 4366 4680 87006827 87007142 2.570000e-122 449.0
18 TraesCS4A01G020800 chrUn 87.795 254 21 2 4436 4680 349581903 349582155 5.930000e-74 289.0
19 TraesCS4A01G020800 chr6B 90.029 692 47 14 4007 4680 715741770 715741083 0.000000e+00 876.0
20 TraesCS4A01G020800 chr1B 86.270 437 37 3 4016 4432 31836023 31836456 1.990000e-123 453.0
21 TraesCS4A01G020800 chr1B 87.795 254 21 2 4436 4680 31837343 31837595 5.930000e-74 289.0
22 TraesCS4A01G020800 chr7D 81.893 243 12 12 4449 4678 616436604 616436381 4.810000e-40 176.0
23 TraesCS4A01G020800 chr7D 89.474 57 4 2 2249 2303 634458590 634458534 2.340000e-08 71.3
24 TraesCS4A01G020800 chr7A 86.486 148 20 0 3521 3668 730884851 730884704 3.750000e-36 163.0
25 TraesCS4A01G020800 chr7A 77.143 280 43 12 2829 3091 731575172 731575447 4.880000e-30 143.0
26 TraesCS4A01G020800 chr2B 80.952 105 16 4 1697 1800 12845973 12845872 3.880000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G020800 chr4A 14173535 14178214 4679 True 8643.00 8643 100.0000 1 4680 1 chr4A.!!$R1 4679
1 TraesCS4A01G020800 chr4B 566228208 566233344 5136 False 1239.75 2235 87.9645 10 4017 4 chr4B.!!$F1 4007
2 TraesCS4A01G020800 chr4D 453042061 453046082 4021 False 1231.00 1818 88.9350 1 3892 4 chr4D.!!$F1 3891
3 TraesCS4A01G020800 chr3A 631783001 631783666 665 False 1103.00 1103 96.5470 4015 4680 1 chr3A.!!$F1 665
4 TraesCS4A01G020800 chr3A 730203561 730204226 665 True 1103.00 1103 96.5470 4015 4680 1 chr3A.!!$R1 665
5 TraesCS4A01G020800 chr1A 504287427 504288092 665 True 1092.00 1092 96.2460 4015 4680 1 chr1A.!!$R1 665
6 TraesCS4A01G020800 chr5B 513779401 513780083 682 False 889.00 889 90.6710 4015 4677 1 chr5B.!!$F2 662
7 TraesCS4A01G020800 chr5B 170619947 170620489 542 False 479.00 479 82.9900 4111 4679 1 chr5B.!!$F1 568
8 TraesCS4A01G020800 chr5B 545170672 545172144 1472 True 301.00 446 84.4960 4039 4679 2 chr5B.!!$R1 640
9 TraesCS4A01G020800 chrUn 354709998 354710684 686 True 878.00 878 90.2760 4015 4680 1 chrUn.!!$R1 665
10 TraesCS4A01G020800 chr6B 715741083 715741770 687 True 876.00 876 90.0290 4007 4680 1 chr6B.!!$R1 673
11 TraesCS4A01G020800 chr1B 31836023 31837595 1572 False 371.00 453 87.0325 4016 4680 2 chr1B.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 849 0.670546 ACACGAATGAGCCGAACTGG 60.671 55.000 0.00 0.00 42.50 4.00 F
934 1026 0.887387 TCGTTCCCGCCAAAAGGAAG 60.887 55.000 0.00 0.00 42.74 3.46 F
938 1030 1.006220 CCCGCCAAAAGGAAGCAAC 60.006 57.895 0.00 0.00 0.00 4.17 F
1952 2087 1.233019 CTGCCACCACTAGCATATGC 58.767 55.000 20.36 20.36 38.56 3.14 F
2352 3534 0.246910 TATGTTAAGTCGCCGCCACA 59.753 50.000 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1749 0.759436 TAGGAGGCCAACGGAGATCC 60.759 60.000 5.01 0.00 0.00 3.36 R
1931 2034 0.839277 ATATGCTAGTGGTGGCAGCA 59.161 50.000 16.56 16.56 44.37 4.41 R
2335 3517 1.227586 TTGTGGCGGCGACTTAACA 60.228 52.632 16.45 7.42 0.00 2.41 R
3474 4744 0.314935 CATGGGTTGTTCAGCGCTTT 59.685 50.000 7.50 0.00 0.00 3.51 R
3926 5205 0.527565 ACACATGGGAAATTGCGAGC 59.472 50.000 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 92 7.017254 CCATTTAGGGGACATACTACCTATTGT 59.983 40.741 0.00 0.00 35.65 2.71
92 95 4.900054 AGGGGACATACTACCTATTGTGAC 59.100 45.833 0.00 0.00 0.00 3.67
99 102 9.865321 GACATACTACCTATTGTGACTTGTTTA 57.135 33.333 0.00 0.00 0.00 2.01
120 123 2.235016 TCATGGAAGGTTTTGGGAACG 58.765 47.619 0.00 0.00 0.00 3.95
136 139 3.264947 GGAACGTTCTAGCCGGTTTTAT 58.735 45.455 26.32 0.00 0.00 1.40
144 147 4.189231 TCTAGCCGGTTTTATGAAGCTTC 58.811 43.478 19.89 19.89 0.00 3.86
149 152 3.506067 CCGGTTTTATGAAGCTTCTGGTT 59.494 43.478 26.09 11.53 36.51 3.67
244 258 9.688592 ACTTGTTCTTCAAATTCATGATCTTTC 57.311 29.630 0.00 0.00 35.48 2.62
245 259 9.136952 CTTGTTCTTCAAATTCATGATCTTTCC 57.863 33.333 0.00 0.00 35.48 3.13
246 260 8.413309 TGTTCTTCAAATTCATGATCTTTCCT 57.587 30.769 0.00 0.00 0.00 3.36
247 261 8.301720 TGTTCTTCAAATTCATGATCTTTCCTG 58.698 33.333 0.00 0.00 0.00 3.86
355 372 8.231304 ACTTTATCAATTTTGTGAATTCGCAG 57.769 30.769 20.20 9.83 37.69 5.18
365 382 6.991485 TTGTGAATTCGCAGAAATCTTTTC 57.009 33.333 20.20 0.00 45.90 2.29
367 384 6.502652 TGTGAATTCGCAGAAATCTTTTCAA 58.497 32.000 17.57 0.00 45.90 2.69
368 385 6.417635 TGTGAATTCGCAGAAATCTTTTCAAC 59.582 34.615 17.57 0.00 45.90 3.18
370 387 7.168135 GTGAATTCGCAGAAATCTTTTCAACTT 59.832 33.333 14.11 0.00 45.90 2.66
371 388 6.998258 ATTCGCAGAAATCTTTTCAACTTG 57.002 33.333 3.11 0.00 45.90 3.16
373 390 6.130298 TCGCAGAAATCTTTTCAACTTGAA 57.870 33.333 0.00 0.00 34.03 2.69
374 391 6.201517 TCGCAGAAATCTTTTCAACTTGAAG 58.798 36.000 4.43 0.00 37.70 3.02
410 427 4.766375 TCTCACGAACCTTTCTTGACTTT 58.234 39.130 0.00 0.00 33.62 2.66
418 436 4.998788 ACCTTTCTTGACTTTGCAAACTC 58.001 39.130 8.05 9.72 0.00 3.01
431 449 6.857964 ACTTTGCAAACTCTTTCATATTCGTG 59.142 34.615 8.05 0.00 0.00 4.35
495 514 5.249420 GGAACTTTATTGGACTTCAGAGCT 58.751 41.667 0.00 0.00 0.00 4.09
496 515 5.707764 GGAACTTTATTGGACTTCAGAGCTT 59.292 40.000 0.00 0.00 0.00 3.74
527 546 8.572185 TGAATTCGTGACCTTTATTCAAATTCA 58.428 29.630 0.04 7.58 37.61 2.57
528 547 9.573133 GAATTCGTGACCTTTATTCAAATTCAT 57.427 29.630 0.00 0.00 33.84 2.57
562 598 5.496556 TGACCTTTTCATATTCACGGACAT 58.503 37.500 0.00 0.00 0.00 3.06
563 599 6.645306 TGACCTTTTCATATTCACGGACATA 58.355 36.000 0.00 0.00 0.00 2.29
575 611 6.942886 TTCACGGACATATTTCAATTTTGC 57.057 33.333 0.00 0.00 0.00 3.68
734 770 2.675658 TTTCCCTTTTCTCTGTGGGG 57.324 50.000 0.00 0.00 40.05 4.96
735 771 1.827792 TTCCCTTTTCTCTGTGGGGA 58.172 50.000 0.00 0.00 43.61 4.81
779 849 0.670546 ACACGAATGAGCCGAACTGG 60.671 55.000 0.00 0.00 42.50 4.00
803 873 2.032894 GTGTGCAATAATCCGGATCGTG 60.033 50.000 19.43 16.42 0.00 4.35
932 1024 1.598685 GTCGTTCCCGCCAAAAGGA 60.599 57.895 0.00 0.00 0.00 3.36
934 1026 0.887387 TCGTTCCCGCCAAAAGGAAG 60.887 55.000 0.00 0.00 42.74 3.46
935 1027 1.289066 GTTCCCGCCAAAAGGAAGC 59.711 57.895 0.00 0.00 42.74 3.86
936 1028 1.152652 TTCCCGCCAAAAGGAAGCA 60.153 52.632 0.00 0.00 37.23 3.91
938 1030 1.006220 CCCGCCAAAAGGAAGCAAC 60.006 57.895 0.00 0.00 0.00 4.17
939 1031 1.739049 CCGCCAAAAGGAAGCAACA 59.261 52.632 0.00 0.00 0.00 3.33
944 1036 3.312146 CGCCAAAAGGAAGCAACAAAATT 59.688 39.130 0.00 0.00 0.00 1.82
1107 1204 2.137528 CACCAACCCCAACCCCAAC 61.138 63.158 0.00 0.00 0.00 3.77
1255 1358 5.420739 GCTAAGAAGAAGAAGAAGGAGAGGA 59.579 44.000 0.00 0.00 0.00 3.71
1391 1494 3.195698 GCCGCCGATCAACTCCAC 61.196 66.667 0.00 0.00 0.00 4.02
1394 1497 2.668632 GCCGATCAACTCCACCCA 59.331 61.111 0.00 0.00 0.00 4.51
1396 1499 1.450312 CCGATCAACTCCACCCAGC 60.450 63.158 0.00 0.00 0.00 4.85
1425 1528 4.096681 TGAATACCTCCTTTCTCTGCAGA 58.903 43.478 17.19 17.19 0.00 4.26
1429 1532 2.117865 CCTCCTTTCTCTGCAGATCCT 58.882 52.381 18.63 0.00 0.00 3.24
1505 1608 2.857592 ACATGCCGATGCTTTCATTC 57.142 45.000 0.00 0.00 38.71 2.67
1509 1612 2.997980 TGCCGATGCTTTCATTCCTTA 58.002 42.857 0.00 0.00 38.71 2.69
1610 1713 4.053295 GCTGCACATGAACAAAGAATGTT 58.947 39.130 0.00 0.00 45.86 2.71
1615 1718 5.613795 GCACATGAACAAAGAATGTTGCATG 60.614 40.000 19.92 19.92 45.86 4.06
1646 1749 2.002586 CTGCACACCTGTCCTTATTCG 58.997 52.381 0.00 0.00 0.00 3.34
1881 1984 6.533367 CAGGTAAATTGAGTAGTCTTCAGAGC 59.467 42.308 0.00 0.00 0.00 4.09
1908 2011 2.365293 CAGGGTTTCCTTTCAGGGTTTG 59.635 50.000 0.00 0.00 42.67 2.93
1917 2020 3.696548 CCTTTCAGGGTTTGATTAGCTCC 59.303 47.826 0.00 0.00 35.27 4.70
1918 2021 4.568592 CCTTTCAGGGTTTGATTAGCTCCT 60.569 45.833 0.00 0.00 35.27 3.69
1919 2022 3.634397 TCAGGGTTTGATTAGCTCCTG 57.366 47.619 7.36 7.36 42.10 3.86
1921 2024 3.587061 TCAGGGTTTGATTAGCTCCTGAA 59.413 43.478 12.71 0.00 45.12 3.02
1923 2026 3.589288 AGGGTTTGATTAGCTCCTGAAGT 59.411 43.478 0.00 0.00 0.00 3.01
1924 2027 3.691609 GGGTTTGATTAGCTCCTGAAGTG 59.308 47.826 0.00 0.00 0.00 3.16
1926 2029 4.762251 GGTTTGATTAGCTCCTGAAGTGTT 59.238 41.667 0.00 0.00 0.00 3.32
1928 2031 6.430000 GGTTTGATTAGCTCCTGAAGTGTTAA 59.570 38.462 0.00 0.00 0.00 2.01
1929 2032 7.361286 GGTTTGATTAGCTCCTGAAGTGTTAAG 60.361 40.741 0.00 0.00 0.00 1.85
1930 2033 6.360370 TGATTAGCTCCTGAAGTGTTAAGT 57.640 37.500 0.00 0.00 0.00 2.24
1931 2034 6.769512 TGATTAGCTCCTGAAGTGTTAAGTT 58.230 36.000 0.00 0.00 0.00 2.66
1932 2035 6.650807 TGATTAGCTCCTGAAGTGTTAAGTTG 59.349 38.462 0.00 0.00 0.00 3.16
1933 2036 3.142174 AGCTCCTGAAGTGTTAAGTTGC 58.858 45.455 0.00 0.00 0.00 4.17
1935 2038 3.058639 GCTCCTGAAGTGTTAAGTTGCTG 60.059 47.826 0.00 0.00 0.00 4.41
1936 2039 2.878406 TCCTGAAGTGTTAAGTTGCTGC 59.122 45.455 0.00 0.00 0.00 5.25
1945 2080 2.472695 TAAGTTGCTGCCACCACTAG 57.527 50.000 0.00 0.00 0.00 2.57
1952 2087 1.233019 CTGCCACCACTAGCATATGC 58.767 55.000 20.36 20.36 38.56 3.14
1973 2137 6.364568 TGCTATCTTACTATGGCATGATGT 57.635 37.500 10.98 8.84 38.29 3.06
1987 2151 5.357878 TGGCATGATGTCTTTGTAAATCTCC 59.642 40.000 0.00 0.00 0.00 3.71
1988 2152 5.591877 GGCATGATGTCTTTGTAAATCTCCT 59.408 40.000 0.00 0.00 0.00 3.69
1989 2153 6.238593 GGCATGATGTCTTTGTAAATCTCCTC 60.239 42.308 0.00 0.00 0.00 3.71
2004 2168 9.706691 GTAAATCTCCTCAATAATGAATCGGTA 57.293 33.333 0.00 0.00 34.49 4.02
2009 2173 9.749340 TCTCCTCAATAATGAATCGGTATAGTA 57.251 33.333 0.00 0.00 34.49 1.82
2053 2217 6.648502 CAATGGAAAAGCAACACATTAACAC 58.351 36.000 0.00 0.00 31.19 3.32
2066 2230 9.528018 CAACACATTAACACAAGGTTATTCTTT 57.472 29.630 0.00 0.00 41.43 2.52
2158 3340 4.451096 TGTTCAGAAAATACGCCTTCTCAC 59.549 41.667 0.00 0.00 29.29 3.51
2161 3343 3.372206 CAGAAAATACGCCTTCTCACCAG 59.628 47.826 0.00 0.00 29.29 4.00
2178 3360 2.917933 CCAGTCTGTTGGTTCTTGTCA 58.082 47.619 0.00 0.00 33.38 3.58
2212 3394 9.881773 AGATTATGTTTATGGGGAATATGTGTT 57.118 29.630 0.00 0.00 0.00 3.32
2223 3405 8.463930 TGGGGAATATGTGTTGAATTATCTTC 57.536 34.615 0.00 0.00 0.00 2.87
2226 3408 9.566432 GGGAATATGTGTTGAATTATCTTCTCT 57.434 33.333 0.00 0.00 0.00 3.10
2290 3472 7.443879 TGTTACATGTAAATTGAGCAGTCTTCA 59.556 33.333 19.63 5.88 0.00 3.02
2298 3480 1.897802 TGAGCAGTCTTCAGAGCATGA 59.102 47.619 0.00 0.00 35.62 3.07
2305 3487 5.658468 CAGTCTTCAGAGCATGATCAACTA 58.342 41.667 14.38 0.00 37.89 2.24
2322 3504 8.677300 TGATCAACTAAACTGATTTGATTAGCC 58.323 33.333 0.00 0.00 38.51 3.93
2346 3528 3.255969 TCAGGGTTATGTTAAGTCGCC 57.744 47.619 0.00 0.00 0.00 5.54
2352 3534 0.246910 TATGTTAAGTCGCCGCCACA 59.753 50.000 0.00 0.00 0.00 4.17
2355 3537 1.070105 TTAAGTCGCCGCCACAACT 59.930 52.632 0.00 0.00 0.00 3.16
2360 3542 0.519961 GTCGCCGCCACAACTAATTT 59.480 50.000 0.00 0.00 0.00 1.82
2370 3552 6.292703 CCGCCACAACTAATTTACTATGCTAC 60.293 42.308 0.00 0.00 0.00 3.58
2381 3563 8.664211 AATTTACTATGCTACTTCACTAAGGC 57.336 34.615 0.00 0.00 37.01 4.35
2385 3567 3.981071 TGCTACTTCACTAAGGCATGT 57.019 42.857 0.00 0.00 37.01 3.21
2433 3615 7.658167 TGACTTGGTGAAGTATATTTTCGTGAA 59.342 33.333 0.00 0.00 42.80 3.18
2474 3656 2.270257 GGCCTGCAGCACATTGACA 61.270 57.895 8.66 0.00 46.50 3.58
2492 3674 7.549134 ACATTGACATAAAGATCTGTTAAGCGA 59.451 33.333 0.00 0.00 0.00 4.93
2506 3688 7.921787 TCTGTTAAGCGAACATGAAAAAGTAA 58.078 30.769 0.00 0.00 46.95 2.24
2507 3689 8.399425 TCTGTTAAGCGAACATGAAAAAGTAAA 58.601 29.630 0.00 0.00 46.95 2.01
2509 3691 7.968956 TGTTAAGCGAACATGAAAAAGTAAACA 59.031 29.630 0.00 0.00 43.30 2.83
2512 3694 7.254227 AGCGAACATGAAAAAGTAAACACTA 57.746 32.000 0.00 0.00 0.00 2.74
2514 3696 7.012044 AGCGAACATGAAAAAGTAAACACTACT 59.988 33.333 0.00 0.00 0.00 2.57
2515 3697 7.642586 GCGAACATGAAAAAGTAAACACTACTT 59.357 33.333 0.00 0.00 39.24 2.24
2516 3698 9.155053 CGAACATGAAAAAGTAAACACTACTTC 57.845 33.333 0.00 0.00 36.82 3.01
2518 3700 7.636326 ACATGAAAAAGTAAACACTACTTCCG 58.364 34.615 0.00 0.00 36.82 4.30
2519 3701 6.607735 TGAAAAAGTAAACACTACTTCCGG 57.392 37.500 0.00 0.00 36.82 5.14
2524 3792 7.628769 AAAGTAAACACTACTTCCGGAAAAA 57.371 32.000 19.39 8.14 36.82 1.94
2563 3831 6.264744 CCTCATCATGCCACTTCAGAAAATAT 59.735 38.462 0.00 0.00 0.00 1.28
2564 3832 7.034685 TCATCATGCCACTTCAGAAAATATG 57.965 36.000 0.00 0.00 0.00 1.78
2597 3865 6.240145 TCAATCTGTTGATTCTTGATGTGGA 58.760 36.000 0.00 0.00 40.61 4.02
2657 3925 5.564550 ACTTGTCCTTGAGCTATTTCACAT 58.435 37.500 0.00 0.00 0.00 3.21
2664 3932 8.341173 GTCCTTGAGCTATTTCACATATTTCAG 58.659 37.037 0.00 0.00 0.00 3.02
2669 3937 9.399797 TGAGCTATTTCACATATTTCAGTTGAT 57.600 29.630 0.00 0.00 0.00 2.57
2687 3955 6.968904 CAGTTGATTTGTGTGGTCTAATATGC 59.031 38.462 0.00 0.00 0.00 3.14
2695 3963 7.849322 TGTGTGGTCTAATATGCCTAGATAA 57.151 36.000 0.00 0.00 0.00 1.75
2696 3964 7.667557 TGTGTGGTCTAATATGCCTAGATAAC 58.332 38.462 0.00 0.00 0.00 1.89
2698 3966 9.021807 GTGTGGTCTAATATGCCTAGATAACTA 57.978 37.037 0.00 0.00 0.00 2.24
2699 3967 9.021807 TGTGGTCTAATATGCCTAGATAACTAC 57.978 37.037 0.00 0.00 0.00 2.73
2700 3968 9.245481 GTGGTCTAATATGCCTAGATAACTACT 57.755 37.037 0.00 0.00 0.00 2.57
2701 3969 9.824216 TGGTCTAATATGCCTAGATAACTACTT 57.176 33.333 0.00 0.00 0.00 2.24
2720 3988 9.524106 AACTACTTGTGTATTTTAGTTTTTGGC 57.476 29.630 0.00 0.00 0.00 4.52
2725 3993 6.212955 TGTGTATTTTAGTTTTTGGCTGCTC 58.787 36.000 0.00 0.00 0.00 4.26
2740 4008 2.927028 CTGCTCCCATCATGTCAATCA 58.073 47.619 0.00 0.00 0.00 2.57
2768 4036 6.575244 TGTTCTCCCTGGACATATGTATTT 57.425 37.500 8.71 0.00 0.00 1.40
2933 4201 8.764524 TTTGTTTTGTTTAAAGTGCACATACT 57.235 26.923 21.04 2.33 0.00 2.12
3236 4504 3.951775 CTGTTGTCAGCTCTAAGGAGT 57.048 47.619 0.00 0.00 41.38 3.85
3238 4506 5.392767 CTGTTGTCAGCTCTAAGGAGTAA 57.607 43.478 0.00 0.00 41.38 2.24
3340 4610 6.037786 AGTAACAGATGCTGCTAGTGTTAA 57.962 37.500 16.99 5.45 35.84 2.01
3368 4638 5.280164 CCTGAAGCCATGCCTAGACATTATA 60.280 44.000 0.00 0.00 0.00 0.98
3391 4661 5.993055 AGGACTCTGTACTCTAGTTACTCC 58.007 45.833 0.00 0.00 0.00 3.85
3470 4740 4.721776 AGGAACCTGTAATAAGATCTGGCA 59.278 41.667 0.00 0.00 0.00 4.92
3471 4741 5.370880 AGGAACCTGTAATAAGATCTGGCAT 59.629 40.000 0.00 0.00 0.00 4.40
3474 4744 6.252599 ACCTGTAATAAGATCTGGCATTGA 57.747 37.500 0.00 0.00 0.00 2.57
3476 4746 7.118723 ACCTGTAATAAGATCTGGCATTGAAA 58.881 34.615 0.00 0.00 0.00 2.69
3491 4761 0.749818 TGAAAGCGCTGAACAACCCA 60.750 50.000 12.58 0.00 0.00 4.51
3501 4771 1.337118 GAACAACCCATGGCTCCAAA 58.663 50.000 6.09 0.00 0.00 3.28
3541 4811 3.151022 GGAGAGGAGAGTGGCGGG 61.151 72.222 0.00 0.00 0.00 6.13
3670 4940 1.203994 TCGCAGCCTACTACTGAAACC 59.796 52.381 0.00 0.00 37.32 3.27
3673 4943 2.028020 GCAGCCTACTACTGAAACCACT 60.028 50.000 0.00 0.00 37.32 4.00
3686 4956 4.453751 TGAAACCACTACCTAAAAGCGTT 58.546 39.130 0.00 0.00 0.00 4.84
3752 5022 2.108250 AGCATAGGTGGTGTGTTTCCTT 59.892 45.455 0.00 0.00 34.14 3.36
3753 5023 2.488153 GCATAGGTGGTGTGTTTCCTTC 59.512 50.000 0.00 0.00 0.00 3.46
3764 5034 0.969149 GTTTCCTTCAAGGGCCAAGG 59.031 55.000 13.64 13.64 40.69 3.61
3788 5058 2.031683 GTGTTCGTTGAAGTTGAGGTGG 59.968 50.000 0.00 0.00 0.00 4.61
3792 5062 2.940410 TCGTTGAAGTTGAGGTGGAAAC 59.060 45.455 0.00 0.00 0.00 2.78
3855 5126 2.575532 CTGTTTGCCAGAAGAGTTGGA 58.424 47.619 0.00 0.00 44.49 3.53
3892 5171 2.033194 GGCGGTGGACAAGCTACAC 61.033 63.158 0.00 0.00 0.00 2.90
3897 5176 2.417719 GGTGGACAAGCTACACAAGAG 58.582 52.381 11.31 0.00 36.87 2.85
3914 5193 3.323751 AGAGATTTTGGCCAAACATGC 57.676 42.857 30.43 19.00 0.00 4.06
3915 5194 2.633967 AGAGATTTTGGCCAAACATGCA 59.366 40.909 30.43 16.08 0.00 3.96
3916 5195 2.738314 GAGATTTTGGCCAAACATGCAC 59.262 45.455 30.43 16.43 0.00 4.57
3944 5224 0.527113 TGCTCGCAATTTCCCATGTG 59.473 50.000 0.00 0.00 0.00 3.21
3950 5230 2.752354 CGCAATTTCCCATGTGTCCTTA 59.248 45.455 0.00 0.00 0.00 2.69
3977 5262 2.617308 CTGTTATGGCTCCTGATTGCAG 59.383 50.000 0.00 0.00 41.93 4.41
3983 5268 1.453379 CTCCTGATTGCAGCCCTGG 60.453 63.158 0.00 0.00 40.91 4.45
3988 5273 1.076485 GATTGCAGCCCTGGGACAT 60.076 57.895 19.27 0.00 38.20 3.06
3999 5284 0.395311 CTGGGACATGCAGCAGGAAT 60.395 55.000 15.39 0.00 38.20 3.01
4013 5298 6.088824 GCAGCAGGAATTTATGTATGCATAC 58.911 40.000 26.72 26.72 37.31 2.39
4133 5438 0.468226 GAATCCTCCACCGCCATACA 59.532 55.000 0.00 0.00 0.00 2.29
4407 5716 1.367471 CTCACGCCAGGAAGTGACA 59.633 57.895 12.62 0.00 41.81 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 6.068010 ACCTTCCATGATAAACAAGTCACAA 58.932 36.000 0.00 0.00 0.00 3.33
89 92 7.432869 CAAAACCTTCCATGATAAACAAGTCA 58.567 34.615 0.00 0.00 0.00 3.41
92 95 6.014669 TCCCAAAACCTTCCATGATAAACAAG 60.015 38.462 0.00 0.00 0.00 3.16
99 102 2.825532 CGTTCCCAAAACCTTCCATGAT 59.174 45.455 0.00 0.00 0.00 2.45
102 105 2.375014 ACGTTCCCAAAACCTTCCAT 57.625 45.000 0.00 0.00 0.00 3.41
120 123 3.939592 AGCTTCATAAAACCGGCTAGAAC 59.060 43.478 0.00 0.00 0.00 3.01
218 231 9.688592 GAAAGATCATGAATTTGAAGAACAAGT 57.311 29.630 12.53 0.00 39.77 3.16
219 232 9.136952 GGAAAGATCATGAATTTGAAGAACAAG 57.863 33.333 12.53 0.00 39.77 3.16
222 235 8.517878 TCAGGAAAGATCATGAATTTGAAGAAC 58.482 33.333 12.53 0.23 42.91 3.01
334 351 8.984891 ATTTCTGCGAATTCACAAAATTGATA 57.015 26.923 6.22 0.00 0.00 2.15
337 354 7.342318 AGATTTCTGCGAATTCACAAAATTG 57.658 32.000 6.22 0.00 0.00 2.32
344 361 6.638468 AGTTGAAAAGATTTCTGCGAATTCAC 59.362 34.615 6.22 0.00 0.00 3.18
345 362 6.738114 AGTTGAAAAGATTTCTGCGAATTCA 58.262 32.000 6.22 7.53 0.00 2.57
346 363 7.379529 TCAAGTTGAAAAGATTTCTGCGAATTC 59.620 33.333 2.20 0.00 0.00 2.17
393 410 3.691049 TGCAAAGTCAAGAAAGGTTCG 57.309 42.857 0.00 0.00 34.02 3.95
394 411 5.410924 AGTTTGCAAAGTCAAGAAAGGTTC 58.589 37.500 13.26 0.00 0.00 3.62
410 427 5.940192 ACACGAATATGAAAGAGTTTGCA 57.060 34.783 0.00 0.00 0.00 4.08
532 559 9.801873 CCGTGAATATGAAAAGGTCAAATAAAT 57.198 29.630 0.00 0.00 40.50 1.40
536 563 6.432783 TGTCCGTGAATATGAAAAGGTCAAAT 59.567 34.615 0.00 0.00 40.50 2.32
539 566 4.900684 TGTCCGTGAATATGAAAAGGTCA 58.099 39.130 0.00 0.00 41.67 4.02
717 753 1.423921 GTTCCCCACAGAGAAAAGGGA 59.576 52.381 0.00 0.00 45.18 4.20
779 849 3.059597 CGATCCGGATTATTGCACACTTC 60.060 47.826 20.22 0.05 0.00 3.01
803 873 3.802418 CTATGGGCCGTACCGTGCC 62.802 68.421 0.00 7.09 40.55 5.01
850 942 1.133668 GGGCTCCAGTGGATATTGCTT 60.134 52.381 13.56 0.00 0.00 3.91
938 1030 3.129287 CGGAGATGGGGAGAACAATTTTG 59.871 47.826 0.00 0.00 0.00 2.44
939 1031 3.010138 TCGGAGATGGGGAGAACAATTTT 59.990 43.478 0.00 0.00 0.00 1.82
944 1036 1.762957 GAATCGGAGATGGGGAGAACA 59.237 52.381 0.00 0.00 45.12 3.18
1080 1177 2.603652 GGGGTTGGTGGAGGAGGAC 61.604 68.421 0.00 0.00 0.00 3.85
1218 1318 1.221840 CTTAGCACCATCCTGCGGT 59.778 57.895 0.00 0.00 42.42 5.68
1234 1334 4.219725 CGTCCTCTCCTTCTTCTTCTTCTT 59.780 45.833 0.00 0.00 0.00 2.52
1235 1335 3.761752 CGTCCTCTCCTTCTTCTTCTTCT 59.238 47.826 0.00 0.00 0.00 2.85
1236 1336 3.759618 TCGTCCTCTCCTTCTTCTTCTTC 59.240 47.826 0.00 0.00 0.00 2.87
1391 1494 1.134098 AGGTATTCATTGTCCGCTGGG 60.134 52.381 0.00 0.00 0.00 4.45
1394 1497 2.119495 AGGAGGTATTCATTGTCCGCT 58.881 47.619 0.00 0.00 32.14 5.52
1396 1499 4.770795 AGAAAGGAGGTATTCATTGTCCG 58.229 43.478 0.00 0.00 28.71 4.79
1425 1528 6.774656 GGGTTGATCATCTAATTGAACAGGAT 59.225 38.462 0.00 0.00 31.21 3.24
1429 1532 4.881273 CGGGGTTGATCATCTAATTGAACA 59.119 41.667 0.00 0.00 0.00 3.18
1646 1749 0.759436 TAGGAGGCCAACGGAGATCC 60.759 60.000 5.01 0.00 0.00 3.36
1908 2011 6.402658 GCAACTTAACACTTCAGGAGCTAATC 60.403 42.308 0.00 0.00 0.00 1.75
1917 2020 2.618241 TGGCAGCAACTTAACACTTCAG 59.382 45.455 0.00 0.00 0.00 3.02
1918 2021 2.357637 GTGGCAGCAACTTAACACTTCA 59.642 45.455 0.00 0.00 0.00 3.02
1919 2022 2.287608 GGTGGCAGCAACTTAACACTTC 60.288 50.000 12.58 0.00 0.00 3.01
1921 2024 1.318576 GGTGGCAGCAACTTAACACT 58.681 50.000 12.58 0.00 0.00 3.55
1923 2026 1.028905 GTGGTGGCAGCAACTTAACA 58.971 50.000 22.39 0.00 0.00 2.41
1924 2027 1.318576 AGTGGTGGCAGCAACTTAAC 58.681 50.000 22.39 7.80 0.00 2.01
1926 2029 1.610624 GCTAGTGGTGGCAGCAACTTA 60.611 52.381 22.39 12.84 35.35 2.24
1928 2031 1.302832 GCTAGTGGTGGCAGCAACT 60.303 57.895 22.39 20.86 35.35 3.16
1929 2032 1.600636 TGCTAGTGGTGGCAGCAAC 60.601 57.895 22.39 15.09 42.09 4.17
1930 2033 2.835420 TGCTAGTGGTGGCAGCAA 59.165 55.556 22.39 5.87 42.09 3.91
1931 2034 0.839277 ATATGCTAGTGGTGGCAGCA 59.161 50.000 16.56 16.56 44.37 4.41
1932 2035 1.233019 CATATGCTAGTGGTGGCAGC 58.767 55.000 10.30 10.30 44.37 5.25
1933 2036 1.233019 GCATATGCTAGTGGTGGCAG 58.767 55.000 20.64 0.00 44.37 4.85
1945 2080 6.988580 TCATGCCATAGTAAGATAGCATATGC 59.011 38.462 20.36 20.36 38.82 3.14
1952 2087 8.933807 CAAAGACATCATGCCATAGTAAGATAG 58.066 37.037 0.00 0.00 0.00 2.08
2009 2173 9.295825 TCCATTGCCTATCGTCATAAAAATATT 57.704 29.630 0.00 0.00 0.00 1.28
2024 2188 3.577848 TGTGTTGCTTTTCCATTGCCTAT 59.422 39.130 0.00 0.00 0.00 2.57
2025 2189 2.961741 TGTGTTGCTTTTCCATTGCCTA 59.038 40.909 0.00 0.00 0.00 3.93
2033 2197 5.234116 CCTTGTGTTAATGTGTTGCTTTTCC 59.766 40.000 0.00 0.00 0.00 3.13
2122 3304 3.988379 TCTGAACAAGTGAATGGCAAC 57.012 42.857 0.00 0.00 0.00 4.17
2158 3340 2.917933 TGACAAGAACCAACAGACTGG 58.082 47.619 7.51 0.00 42.68 4.00
2161 3343 2.030805 GCCATGACAAGAACCAACAGAC 60.031 50.000 0.00 0.00 0.00 3.51
2178 3360 7.477864 TCCCCATAAACATAATCTTATGCCAT 58.522 34.615 9.34 0.00 43.30 4.40
2290 3472 7.609146 TCAAATCAGTTTAGTTGATCATGCTCT 59.391 33.333 0.00 0.00 34.30 4.09
2298 3480 7.068716 GGGGCTAATCAAATCAGTTTAGTTGAT 59.931 37.037 0.00 0.00 43.79 2.57
2305 3487 5.332743 TGAAGGGGCTAATCAAATCAGTTT 58.667 37.500 0.00 0.00 0.00 2.66
2335 3517 1.227586 TTGTGGCGGCGACTTAACA 60.228 52.632 16.45 7.42 0.00 2.41
2342 3524 1.733360 GTAAATTAGTTGTGGCGGCGA 59.267 47.619 12.98 0.00 0.00 5.54
2346 3528 5.734855 AGCATAGTAAATTAGTTGTGGCG 57.265 39.130 0.00 0.00 0.00 5.69
2355 3537 9.760077 GCCTTAGTGAAGTAGCATAGTAAATTA 57.240 33.333 0.00 0.00 0.00 1.40
2360 3542 6.323996 ACATGCCTTAGTGAAGTAGCATAGTA 59.676 38.462 0.00 0.00 38.04 1.82
2370 3552 2.440409 AGCCAACATGCCTTAGTGAAG 58.560 47.619 0.00 0.00 0.00 3.02
2378 3560 4.347607 AGATTTAAGAAGCCAACATGCCT 58.652 39.130 0.00 0.00 0.00 4.75
2385 3567 9.466497 AGTCATTATTGAGATTTAAGAAGCCAA 57.534 29.630 0.00 0.00 30.85 4.52
2391 3573 9.958180 TCACCAAGTCATTATTGAGATTTAAGA 57.042 29.630 0.00 0.00 30.85 2.10
2429 3611 4.427312 CCTTTTGCATTGCCTATCTTCAC 58.573 43.478 6.12 0.00 0.00 3.18
2492 3674 8.126700 CGGAAGTAGTGTTTACTTTTTCATGTT 58.873 33.333 1.56 0.00 37.83 2.71
2506 3688 5.032327 ACTCTTTTTCCGGAAGTAGTGTT 57.968 39.130 17.97 7.64 0.00 3.32
2507 3689 4.684484 ACTCTTTTTCCGGAAGTAGTGT 57.316 40.909 17.97 19.64 0.00 3.55
2509 3691 5.032327 ACAACTCTTTTTCCGGAAGTAGT 57.968 39.130 17.97 15.40 0.00 2.73
2512 3694 5.278315 GCATAACAACTCTTTTTCCGGAAGT 60.278 40.000 17.97 8.57 0.00 3.01
2514 3696 4.825085 AGCATAACAACTCTTTTTCCGGAA 59.175 37.500 14.35 14.35 0.00 4.30
2515 3697 4.394729 AGCATAACAACTCTTTTTCCGGA 58.605 39.130 0.00 0.00 0.00 5.14
2516 3698 4.379499 GGAGCATAACAACTCTTTTTCCGG 60.379 45.833 0.00 0.00 33.29 5.14
2518 3700 5.473504 TGAGGAGCATAACAACTCTTTTTCC 59.526 40.000 0.00 0.00 33.29 3.13
2519 3701 6.560253 TGAGGAGCATAACAACTCTTTTTC 57.440 37.500 0.00 0.00 33.29 2.29
2524 3792 5.366460 CATGATGAGGAGCATAACAACTCT 58.634 41.667 0.00 0.00 37.34 3.24
2563 3831 4.290711 TCAACAGATTGATGAGAAGGCA 57.709 40.909 0.00 0.00 40.01 4.75
2597 3865 5.466127 TTCCCCCTAAACATAATCTTGCT 57.534 39.130 0.00 0.00 0.00 3.91
2657 3925 8.684386 TTAGACCACACAAATCAACTGAAATA 57.316 30.769 0.00 0.00 0.00 1.40
2664 3932 6.095440 AGGCATATTAGACCACACAAATCAAC 59.905 38.462 0.00 0.00 0.00 3.18
2669 3937 6.553953 TCTAGGCATATTAGACCACACAAA 57.446 37.500 0.00 0.00 0.00 2.83
2695 3963 8.909923 AGCCAAAAACTAAAATACACAAGTAGT 58.090 29.630 0.00 0.00 32.86 2.73
2696 3964 9.180678 CAGCCAAAAACTAAAATACACAAGTAG 57.819 33.333 0.00 0.00 32.86 2.57
2698 3966 6.478673 GCAGCCAAAAACTAAAATACACAAGT 59.521 34.615 0.00 0.00 0.00 3.16
2699 3967 6.701400 AGCAGCCAAAAACTAAAATACACAAG 59.299 34.615 0.00 0.00 0.00 3.16
2700 3968 6.578023 AGCAGCCAAAAACTAAAATACACAA 58.422 32.000 0.00 0.00 0.00 3.33
2701 3969 6.155475 AGCAGCCAAAAACTAAAATACACA 57.845 33.333 0.00 0.00 0.00 3.72
2702 3970 5.633601 GGAGCAGCCAAAAACTAAAATACAC 59.366 40.000 0.00 0.00 36.34 2.90
2703 3971 5.279256 GGGAGCAGCCAAAAACTAAAATACA 60.279 40.000 0.00 0.00 38.95 2.29
2704 3972 5.168569 GGGAGCAGCCAAAAACTAAAATAC 58.831 41.667 0.00 0.00 38.95 1.89
2705 3973 4.835615 TGGGAGCAGCCAAAAACTAAAATA 59.164 37.500 0.00 0.00 38.95 1.40
2706 3974 3.645687 TGGGAGCAGCCAAAAACTAAAAT 59.354 39.130 0.00 0.00 38.95 1.82
2720 3988 2.927028 TGATTGACATGATGGGAGCAG 58.073 47.619 0.00 0.00 0.00 4.24
2725 3993 3.765511 ACAAGGTTGATTGACATGATGGG 59.234 43.478 0.00 0.00 34.20 4.00
2740 4008 1.518367 TGTCCAGGGAGAACAAGGTT 58.482 50.000 0.00 0.00 0.00 3.50
2768 4036 1.964223 GGAAGGACAGTGTCAGTGAGA 59.036 52.381 24.20 0.00 33.68 3.27
2956 4224 7.982354 AGGTTAGAGATACATGCAAGTACTTTC 59.018 37.037 5.07 1.04 0.00 2.62
3006 4274 3.855950 GCAACAGATAGTGAGCAATTTGC 59.144 43.478 13.55 13.55 45.46 3.68
3151 4419 7.373441 CGGCTGTCTTTTCGTATATTTCATTTC 59.627 37.037 0.00 0.00 0.00 2.17
3232 4500 6.985059 GGAACTTACATATGTGTCCTTACTCC 59.015 42.308 18.81 7.49 39.77 3.85
3233 4501 6.696148 CGGAACTTACATATGTGTCCTTACTC 59.304 42.308 18.81 2.42 39.77 2.59
3234 4502 6.154021 ACGGAACTTACATATGTGTCCTTACT 59.846 38.462 18.81 0.00 39.77 2.24
3235 4503 6.255020 CACGGAACTTACATATGTGTCCTTAC 59.745 42.308 18.81 4.43 39.77 2.34
3236 4504 6.071221 ACACGGAACTTACATATGTGTCCTTA 60.071 38.462 18.81 0.00 39.77 2.69
3237 4505 5.175859 CACGGAACTTACATATGTGTCCTT 58.824 41.667 18.81 9.98 39.77 3.36
3238 4506 4.222145 ACACGGAACTTACATATGTGTCCT 59.778 41.667 18.81 0.46 39.77 3.85
3331 4601 6.148480 GCATGGCTTCAGGATATTAACACTAG 59.852 42.308 0.00 0.00 0.00 2.57
3340 4610 3.262915 GTCTAGGCATGGCTTCAGGATAT 59.737 47.826 28.30 1.74 0.00 1.63
3368 4638 5.488203 TGGAGTAACTAGAGTACAGAGTCCT 59.512 44.000 0.00 0.00 0.00 3.85
3391 4661 3.735237 ATCCGCATAACACTCCTACTG 57.265 47.619 0.00 0.00 0.00 2.74
3470 4740 1.000274 GGGTTGTTCAGCGCTTTCAAT 60.000 47.619 7.50 0.00 0.00 2.57
3471 4741 0.383949 GGGTTGTTCAGCGCTTTCAA 59.616 50.000 7.50 10.92 0.00 2.69
3474 4744 0.314935 CATGGGTTGTTCAGCGCTTT 59.685 50.000 7.50 0.00 0.00 3.51
3476 4746 1.973281 CCATGGGTTGTTCAGCGCT 60.973 57.895 2.64 2.64 0.00 5.92
3491 4761 0.700564 TCTGCCTCTTTTGGAGCCAT 59.299 50.000 0.00 0.00 40.57 4.40
3501 4771 2.570752 TCTTGATGCTTCTCTGCCTCTT 59.429 45.455 0.88 0.00 0.00 2.85
3541 4811 1.067516 TCAACTTTGCTTGGCTTGCTC 59.932 47.619 4.23 0.00 0.00 4.26
3670 4940 3.000727 CCCTGAACGCTTTTAGGTAGTG 58.999 50.000 12.06 0.00 36.87 2.74
3673 4943 3.775261 AACCCTGAACGCTTTTAGGTA 57.225 42.857 12.06 0.00 36.87 3.08
3686 4956 2.778299 CGGAGTGATTCAAAACCCTGA 58.222 47.619 0.00 0.00 0.00 3.86
3720 4990 3.583086 ACCACCTATGCTTCTTACACAGT 59.417 43.478 0.00 0.00 0.00 3.55
3752 5022 1.943730 AACACCACCTTGGCCCTTGA 61.944 55.000 0.00 0.00 42.67 3.02
3753 5023 1.457455 AACACCACCTTGGCCCTTG 60.457 57.895 0.00 0.00 42.67 3.61
3764 5034 2.031683 CCTCAACTTCAACGAACACCAC 59.968 50.000 0.00 0.00 0.00 4.16
3788 5058 6.704493 GGAAGTAAAATGTTTTCTGGGGTTTC 59.296 38.462 0.00 0.00 0.00 2.78
3792 5062 4.805219 CGGAAGTAAAATGTTTTCTGGGG 58.195 43.478 0.00 0.00 0.00 4.96
3855 5126 2.923121 CCACCAGCACAGCAATATACT 58.077 47.619 0.00 0.00 0.00 2.12
3892 5171 3.434299 GCATGTTTGGCCAAAATCTCTTG 59.566 43.478 31.92 24.49 31.33 3.02
3897 5176 2.769893 AGTGCATGTTTGGCCAAAATC 58.230 42.857 31.92 20.71 31.33 2.17
3926 5205 0.527565 ACACATGGGAAATTGCGAGC 59.472 50.000 0.00 0.00 0.00 5.03
3944 5224 2.544267 GCCATAACAGATGCGTAAGGAC 59.456 50.000 0.00 0.00 44.26 3.85
3950 5230 0.833287 AGGAGCCATAACAGATGCGT 59.167 50.000 0.00 0.00 0.00 5.24
3977 5262 4.746309 TGCTGCATGTCCCAGGGC 62.746 66.667 0.00 0.00 0.00 5.19
3983 5268 3.382546 ACATAAATTCCTGCTGCATGTCC 59.617 43.478 1.31 0.00 0.00 4.02
3988 5273 3.952967 TGCATACATAAATTCCTGCTGCA 59.047 39.130 0.88 0.88 34.14 4.41
4133 5438 8.767436 AGAGAAAGGAGAGCTTTTTATAGATGT 58.233 33.333 0.00 0.00 0.00 3.06
4279 5588 4.030452 GTGCACTTCCGCCACAGC 62.030 66.667 10.32 0.00 0.00 4.40
4392 5701 0.034059 CTTCTGTCACTTCCTGGCGT 59.966 55.000 0.00 0.00 0.00 5.68
4407 5716 1.625818 ACAAGATCCGGAAGCACTTCT 59.374 47.619 9.01 1.87 39.45 2.85
4542 7551 2.924105 GCAGAACCAGCAGCCCAAC 61.924 63.158 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.