Multiple sequence alignment - TraesCS4A01G020700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G020700 chr4A 100.000 2318 0 0 1 2318 14163417 14165734 0.000000e+00 4281
1 TraesCS4A01G020700 chr4D 89.916 1795 95 40 1 1750 453052614 453050861 0.000000e+00 2233
2 TraesCS4A01G020700 chr4B 93.342 751 31 2 551 1299 566239147 566238414 0.000000e+00 1092
3 TraesCS4A01G020700 chr4B 88.430 363 21 16 1393 1750 566238375 566238029 3.560000e-113 418
4 TraesCS4A01G020700 chr4B 92.157 255 14 3 300 552 566239435 566239185 2.830000e-94 355
5 TraesCS4A01G020700 chr4B 84.858 317 37 8 1 308 566239865 566239551 2.240000e-80 309
6 TraesCS4A01G020700 chr4B 85.965 285 10 10 1988 2270 566238030 566237774 6.310000e-71 278
7 TraesCS4A01G020700 chr5A 95.122 246 12 0 1747 1992 243924330 243924575 2.790000e-104 388
8 TraesCS4A01G020700 chr3B 95.455 242 11 0 1748 1989 497096575 497096334 1.000000e-103 387
9 TraesCS4A01G020700 chr3B 94.694 245 13 0 1749 1993 12175015 12174771 4.670000e-102 381
10 TraesCS4A01G020700 chr3B 93.281 253 15 2 1740 1990 650648301 650648553 2.810000e-99 372
11 TraesCS4A01G020700 chr2A 94.672 244 13 0 1747 1990 84977527 84977770 1.680000e-101 379
12 TraesCS4A01G020700 chr1A 94.024 251 13 2 1744 1992 360069682 360069432 1.680000e-101 379
13 TraesCS4A01G020700 chr1A 93.307 254 16 1 1742 1994 70214743 70214996 7.820000e-100 374
14 TraesCS4A01G020700 chr3A 93.023 258 17 1 1749 2005 744551468 744551725 2.170000e-100 375
15 TraesCS4A01G020700 chr7A 93.625 251 15 1 1749 1998 699150515 699150265 7.820000e-100 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G020700 chr4A 14163417 14165734 2317 False 4281.0 4281 100.0000 1 2318 1 chr4A.!!$F1 2317
1 TraesCS4A01G020700 chr4D 453050861 453052614 1753 True 2233.0 2233 89.9160 1 1750 1 chr4D.!!$R1 1749
2 TraesCS4A01G020700 chr4B 566237774 566239865 2091 True 490.4 1092 88.9504 1 2270 5 chr4B.!!$R1 2269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 498 0.109412 GCAGCTCACATGCAAGGTTC 60.109 55.0 0.0 0.0 43.31 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2137 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.0 13.24 0.0 41.22 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.813200 GGACAGCCGGTAGTAGCC 59.187 66.667 1.90 0.00 0.00 3.93
114 115 1.784756 CGCGTGCACGTGTACTATCG 61.785 60.000 37.45 26.11 44.02 2.92
135 139 0.737715 CGTCAAGGAGAAAGAGGGCG 60.738 60.000 0.00 0.00 0.00 6.13
139 143 1.768684 AAGGAGAAAGAGGGCGTGCA 61.769 55.000 0.00 0.00 0.00 4.57
172 177 1.532604 GCTAAACCTGCCACCAACCC 61.533 60.000 0.00 0.00 0.00 4.11
177 182 2.358737 CTGCCACCAACCCTCGTC 60.359 66.667 0.00 0.00 0.00 4.20
186 191 1.425412 CAACCCTCGTCGTTAACAGG 58.575 55.000 6.39 4.63 0.00 4.00
229 234 4.141846 GCTGATCTCATTGGAACTCACCTA 60.142 45.833 0.00 0.00 0.00 3.08
230 235 5.344743 TGATCTCATTGGAACTCACCTAC 57.655 43.478 0.00 0.00 0.00 3.18
231 236 5.026121 TGATCTCATTGGAACTCACCTACT 58.974 41.667 0.00 0.00 0.00 2.57
232 237 4.808414 TCTCATTGGAACTCACCTACTG 57.192 45.455 0.00 0.00 0.00 2.74
234 239 4.593206 TCTCATTGGAACTCACCTACTGTT 59.407 41.667 0.00 0.00 0.00 3.16
235 240 4.641396 TCATTGGAACTCACCTACTGTTG 58.359 43.478 0.00 0.00 0.00 3.33
236 241 4.346709 TCATTGGAACTCACCTACTGTTGA 59.653 41.667 0.00 0.00 0.00 3.18
237 242 4.974645 TTGGAACTCACCTACTGTTGAT 57.025 40.909 0.00 0.00 0.00 2.57
238 243 4.271696 TGGAACTCACCTACTGTTGATG 57.728 45.455 0.00 0.00 0.00 3.07
243 256 6.313905 GGAACTCACCTACTGTTGATGTAATG 59.686 42.308 0.00 0.00 0.00 1.90
246 259 7.268586 ACTCACCTACTGTTGATGTAATGATC 58.731 38.462 0.00 0.00 0.00 2.92
251 264 9.988815 ACCTACTGTTGATGTAATGATCTTATC 57.011 33.333 0.00 0.00 0.00 1.75
256 269 6.074356 TGTTGATGTAATGATCTTATCGCACG 60.074 38.462 0.00 0.00 0.00 5.34
273 286 1.851053 CACGACTTCTCATGCAGATCG 59.149 52.381 12.54 12.54 38.90 3.69
312 455 1.115467 AGGGATCAAGCGTAGGTCAG 58.885 55.000 0.00 0.00 37.06 3.51
313 456 0.824759 GGGATCAAGCGTAGGTCAGT 59.175 55.000 0.00 0.00 37.06 3.41
314 457 2.029623 GGGATCAAGCGTAGGTCAGTA 58.970 52.381 0.00 0.00 37.06 2.74
315 458 2.223758 GGGATCAAGCGTAGGTCAGTAC 60.224 54.545 0.00 0.00 37.06 2.73
354 497 1.962144 GCAGCTCACATGCAAGGTT 59.038 52.632 0.00 0.00 43.31 3.50
355 498 0.109412 GCAGCTCACATGCAAGGTTC 60.109 55.000 0.00 0.00 43.31 3.62
356 499 1.241165 CAGCTCACATGCAAGGTTCA 58.759 50.000 0.00 0.00 34.99 3.18
357 500 1.199327 CAGCTCACATGCAAGGTTCAG 59.801 52.381 0.00 0.00 34.99 3.02
358 501 1.072806 AGCTCACATGCAAGGTTCAGA 59.927 47.619 0.00 0.00 34.99 3.27
359 502 1.198637 GCTCACATGCAAGGTTCAGAC 59.801 52.381 0.00 0.00 0.00 3.51
360 503 2.497138 CTCACATGCAAGGTTCAGACA 58.503 47.619 0.00 0.00 0.00 3.41
361 504 2.880268 CTCACATGCAAGGTTCAGACAA 59.120 45.455 0.00 0.00 0.00 3.18
362 505 3.286353 TCACATGCAAGGTTCAGACAAA 58.714 40.909 0.00 0.00 0.00 2.83
415 558 8.622948 AGGTAGAATAAGAGAACCAAACAAAG 57.377 34.615 0.00 0.00 32.43 2.77
459 602 5.479375 AGACACGTACCCTGAATCTTTCTTA 59.521 40.000 0.00 0.00 0.00 2.10
472 615 8.394971 TGAATCTTTCTTACAGATTTCAGCAA 57.605 30.769 0.00 0.00 40.43 3.91
515 658 1.153369 CGGGTGCAGGGTCTATGTG 60.153 63.158 0.00 0.00 0.00 3.21
533 676 8.417106 GTCTATGTGAATCAAGGAGTTCATCTA 58.583 37.037 0.00 0.00 36.79 1.98
577 759 8.298030 ACAAACTGTGAGTTTTTCTTTCTTTG 57.702 30.769 0.00 0.00 45.38 2.77
629 813 0.385974 ACACGCGCTTGCATTTTCTC 60.386 50.000 14.54 0.00 39.07 2.87
630 814 1.067199 CACGCGCTTGCATTTTCTCC 61.067 55.000 5.73 0.00 39.07 3.71
645 829 0.320683 TCTCCGTGCCACAATCACAG 60.321 55.000 0.00 0.00 34.27 3.66
688 872 7.368480 ACGAAACTAAACAAAACACTACTGT 57.632 32.000 0.00 0.00 0.00 3.55
690 874 8.934825 ACGAAACTAAACAAAACACTACTGTAA 58.065 29.630 0.00 0.00 0.00 2.41
707 891 9.525826 ACTACTGTAATACTAGGTGTTACACTT 57.474 33.333 15.44 10.48 42.21 3.16
710 894 9.300681 ACTGTAATACTAGGTGTTACACTTACA 57.699 33.333 15.44 17.10 42.21 2.41
711 895 9.565213 CTGTAATACTAGGTGTTACACTTACAC 57.435 37.037 15.44 0.00 42.21 2.90
719 903 3.493503 GTGTTACACTTACACCACTCTGC 59.506 47.826 8.41 0.00 39.93 4.26
720 904 3.386726 TGTTACACTTACACCACTCTGCT 59.613 43.478 0.00 0.00 0.00 4.24
721 905 2.533266 ACACTTACACCACTCTGCTG 57.467 50.000 0.00 0.00 0.00 4.41
722 906 2.039418 ACACTTACACCACTCTGCTGA 58.961 47.619 0.00 0.00 0.00 4.26
723 907 2.036475 ACACTTACACCACTCTGCTGAG 59.964 50.000 18.15 18.15 45.43 3.35
741 925 1.939785 GCCTGCGTACGATCGAGTG 60.940 63.158 24.34 11.30 0.00 3.51
745 933 0.241749 TGCGTACGATCGAGTGGTTT 59.758 50.000 24.34 0.00 0.00 3.27
1291 1479 1.268386 GCATGTGCATGGACAAGATCG 60.268 52.381 24.45 11.15 41.59 3.69
1299 1487 3.374988 GCATGGACAAGATCGACATTCAA 59.625 43.478 0.00 0.00 0.00 2.69
1303 1491 4.329801 TGGACAAGATCGACATTCAATTCG 59.670 41.667 0.00 0.00 36.55 3.34
1307 1495 6.307155 ACAAGATCGACATTCAATTCGAAAC 58.693 36.000 0.00 6.59 46.65 2.78
1308 1496 5.470845 AGATCGACATTCAATTCGAAACC 57.529 39.130 0.00 3.30 46.65 3.27
1309 1497 4.935205 AGATCGACATTCAATTCGAAACCA 59.065 37.500 0.00 0.00 46.65 3.67
1310 1498 4.398549 TCGACATTCAATTCGAAACCAC 57.601 40.909 0.00 0.00 41.16 4.16
1311 1499 3.810386 TCGACATTCAATTCGAAACCACA 59.190 39.130 0.00 0.00 41.16 4.17
1312 1500 4.454161 TCGACATTCAATTCGAAACCACAT 59.546 37.500 0.00 0.00 41.16 3.21
1313 1501 4.788100 CGACATTCAATTCGAAACCACATC 59.212 41.667 0.00 0.00 37.12 3.06
1314 1502 5.616645 CGACATTCAATTCGAAACCACATCA 60.617 40.000 0.00 0.00 37.12 3.07
1315 1503 6.271488 ACATTCAATTCGAAACCACATCAT 57.729 33.333 0.00 0.00 37.12 2.45
1316 1504 7.389803 ACATTCAATTCGAAACCACATCATA 57.610 32.000 0.00 0.00 37.12 2.15
1317 1505 7.475015 ACATTCAATTCGAAACCACATCATAG 58.525 34.615 0.00 0.00 37.12 2.23
1327 1515 7.117812 TCGAAACCACATCATAGTTCTTTCTTC 59.882 37.037 0.00 0.00 0.00 2.87
1336 1524 6.223852 TCATAGTTCTTTCTTCAGTCACACC 58.776 40.000 0.00 0.00 0.00 4.16
1351 1539 0.176219 ACACCAACAACGACTTCGGA 59.824 50.000 3.30 0.00 44.95 4.55
1396 1584 3.073678 TCTGAACATTGGAACCGATGTG 58.926 45.455 22.58 13.15 46.91 3.21
1427 1615 7.338196 TCAAAGAATTACCACACTGAAAACTGA 59.662 33.333 0.00 0.00 0.00 3.41
1430 1618 7.054124 AGAATTACCACACTGAAAACTGAGAA 58.946 34.615 0.00 0.00 0.00 2.87
1433 1621 3.941483 ACCACACTGAAAACTGAGAACTG 59.059 43.478 0.00 0.00 0.00 3.16
1456 1647 1.471327 GCTCTGCAGTCTGCTTCTAGG 60.471 57.143 24.76 10.42 45.31 3.02
1474 1665 5.437946 TCTAGGTCTACATGTGGACACTAG 58.562 45.833 33.19 33.19 42.04 2.57
1477 1668 4.017808 GGTCTACATGTGGACACTAGACT 58.982 47.826 34.41 0.00 42.04 3.24
1478 1669 5.045066 AGGTCTACATGTGGACACTAGACTA 60.045 44.000 34.41 0.62 42.04 2.59
1480 1671 5.881443 GTCTACATGTGGACACTAGACTAGT 59.119 44.000 30.78 9.45 40.30 2.57
1505 1706 3.128242 CAGAAATGGGATGTCAGTGAAGC 59.872 47.826 0.00 0.00 0.00 3.86
1535 1741 5.587844 AGATAATAACTCTGCTTGGCAAGTG 59.412 40.000 26.71 19.48 38.41 3.16
1537 1743 0.183492 AACTCTGCTTGGCAAGTGGA 59.817 50.000 26.71 21.69 38.41 4.02
1600 1806 3.375299 CAGTTTATGGCCAAGTACAGAGC 59.625 47.826 10.96 0.00 0.00 4.09
1624 1830 6.210078 CCTCTCACGTGGATTTCTACTATTC 58.790 44.000 17.00 0.00 0.00 1.75
1657 1863 9.191995 CATTTACTCCAACTGGTGAAAAATTAC 57.808 33.333 4.86 0.00 36.34 1.89
1688 1894 6.793349 ACTCCTAATACACACACGTTAGATC 58.207 40.000 0.00 0.00 0.00 2.75
1699 1905 5.919141 ACACACGTTAGATCAAAGTACTCAC 59.081 40.000 0.00 0.00 0.00 3.51
1748 1954 1.605712 GCAGTCTGGTAGCAAACGAGT 60.606 52.381 1.14 0.00 35.55 4.18
1749 1955 2.352421 GCAGTCTGGTAGCAAACGAGTA 60.352 50.000 1.14 0.00 35.55 2.59
1750 1956 3.243336 CAGTCTGGTAGCAAACGAGTAC 58.757 50.000 0.00 0.00 35.55 2.73
1751 1957 3.057456 CAGTCTGGTAGCAAACGAGTACT 60.057 47.826 0.00 0.00 35.55 2.73
1752 1958 3.190953 AGTCTGGTAGCAAACGAGTACTC 59.809 47.826 13.18 13.18 35.55 2.59
1753 1959 2.490903 TCTGGTAGCAAACGAGTACTCC 59.509 50.000 17.23 2.69 35.55 3.85
1754 1960 1.547372 TGGTAGCAAACGAGTACTCCC 59.453 52.381 17.23 10.01 0.00 4.30
1755 1961 1.823610 GGTAGCAAACGAGTACTCCCT 59.176 52.381 17.23 8.24 0.00 4.20
1756 1962 2.159268 GGTAGCAAACGAGTACTCCCTC 60.159 54.545 17.23 2.71 0.00 4.30
1757 1963 0.896226 AGCAAACGAGTACTCCCTCC 59.104 55.000 17.23 2.63 0.00 4.30
1758 1964 0.606604 GCAAACGAGTACTCCCTCCA 59.393 55.000 17.23 0.00 0.00 3.86
1759 1965 1.207329 GCAAACGAGTACTCCCTCCAT 59.793 52.381 17.23 0.00 0.00 3.41
1760 1966 2.354805 GCAAACGAGTACTCCCTCCATT 60.355 50.000 17.23 1.18 0.00 3.16
1761 1967 3.522553 CAAACGAGTACTCCCTCCATTC 58.477 50.000 17.23 0.00 0.00 2.67
1762 1968 1.777941 ACGAGTACTCCCTCCATTCC 58.222 55.000 17.23 0.00 0.00 3.01
1763 1969 1.006758 ACGAGTACTCCCTCCATTCCA 59.993 52.381 17.23 0.00 0.00 3.53
1764 1970 2.320781 CGAGTACTCCCTCCATTCCAT 58.679 52.381 17.23 0.00 0.00 3.41
1765 1971 3.117246 ACGAGTACTCCCTCCATTCCATA 60.117 47.826 17.23 0.00 0.00 2.74
1766 1972 3.895656 CGAGTACTCCCTCCATTCCATAA 59.104 47.826 17.23 0.00 0.00 1.90
1767 1973 4.528596 CGAGTACTCCCTCCATTCCATAAT 59.471 45.833 17.23 0.00 0.00 1.28
1768 1974 5.567623 CGAGTACTCCCTCCATTCCATAATG 60.568 48.000 17.23 0.00 41.90 1.90
1769 1975 5.227593 AGTACTCCCTCCATTCCATAATGT 58.772 41.667 0.00 0.00 40.84 2.71
1770 1976 6.390504 AGTACTCCCTCCATTCCATAATGTA 58.609 40.000 0.00 0.00 40.84 2.29
1771 1977 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
1772 1978 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
1773 1979 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
1774 1980 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
1775 1981 4.202503 CCCTCCATTCCATAATGTAGTGCT 60.203 45.833 0.00 0.00 40.84 4.40
1776 1982 5.380043 CCTCCATTCCATAATGTAGTGCTT 58.620 41.667 0.00 0.00 40.84 3.91
1777 1983 5.829924 CCTCCATTCCATAATGTAGTGCTTT 59.170 40.000 0.00 0.00 40.84 3.51
1778 1984 6.016777 CCTCCATTCCATAATGTAGTGCTTTC 60.017 42.308 0.00 0.00 40.84 2.62
1779 1985 6.662755 TCCATTCCATAATGTAGTGCTTTCT 58.337 36.000 0.00 0.00 40.84 2.52
1780 1986 6.767902 TCCATTCCATAATGTAGTGCTTTCTC 59.232 38.462 0.00 0.00 40.84 2.87
1781 1987 6.769822 CCATTCCATAATGTAGTGCTTTCTCT 59.230 38.462 0.00 0.00 40.84 3.10
1782 1988 7.933577 CCATTCCATAATGTAGTGCTTTCTCTA 59.066 37.037 0.00 0.00 40.84 2.43
1783 1989 9.499479 CATTCCATAATGTAGTGCTTTCTCTAT 57.501 33.333 0.00 0.00 38.15 1.98
1785 1991 9.905713 TTCCATAATGTAGTGCTTTCTCTATTT 57.094 29.630 0.00 0.00 0.00 1.40
1786 1992 9.547753 TCCATAATGTAGTGCTTTCTCTATTTC 57.452 33.333 0.00 0.00 0.00 2.17
1787 1993 8.778358 CCATAATGTAGTGCTTTCTCTATTTCC 58.222 37.037 0.00 0.00 0.00 3.13
1788 1994 6.910536 AATGTAGTGCTTTCTCTATTTCCG 57.089 37.500 0.00 0.00 0.00 4.30
1789 1995 5.401531 TGTAGTGCTTTCTCTATTTCCGT 57.598 39.130 0.00 0.00 0.00 4.69
1790 1996 5.168569 TGTAGTGCTTTCTCTATTTCCGTG 58.831 41.667 0.00 0.00 0.00 4.94
1791 1997 3.003480 AGTGCTTTCTCTATTTCCGTGC 58.997 45.455 0.00 0.00 0.00 5.34
1792 1998 3.003480 GTGCTTTCTCTATTTCCGTGCT 58.997 45.455 0.00 0.00 0.00 4.40
1793 1999 3.437049 GTGCTTTCTCTATTTCCGTGCTT 59.563 43.478 0.00 0.00 0.00 3.91
1794 2000 3.684788 TGCTTTCTCTATTTCCGTGCTTC 59.315 43.478 0.00 0.00 0.00 3.86
1795 2001 3.684788 GCTTTCTCTATTTCCGTGCTTCA 59.315 43.478 0.00 0.00 0.00 3.02
1796 2002 4.154195 GCTTTCTCTATTTCCGTGCTTCAA 59.846 41.667 0.00 0.00 0.00 2.69
1797 2003 5.607119 TTTCTCTATTTCCGTGCTTCAAC 57.393 39.130 0.00 0.00 0.00 3.18
1798 2004 4.537135 TCTCTATTTCCGTGCTTCAACT 57.463 40.909 0.00 0.00 0.00 3.16
1799 2005 4.894784 TCTCTATTTCCGTGCTTCAACTT 58.105 39.130 0.00 0.00 0.00 2.66
1800 2006 5.305585 TCTCTATTTCCGTGCTTCAACTTT 58.694 37.500 0.00 0.00 0.00 2.66
1801 2007 5.179368 TCTCTATTTCCGTGCTTCAACTTTG 59.821 40.000 0.00 0.00 0.00 2.77
1802 2008 5.060506 TCTATTTCCGTGCTTCAACTTTGA 58.939 37.500 0.00 0.00 34.92 2.69
1803 2009 3.414549 TTTCCGTGCTTCAACTTTGAC 57.585 42.857 0.00 0.00 36.83 3.18
1804 2010 1.305201 TCCGTGCTTCAACTTTGACC 58.695 50.000 0.00 0.00 36.83 4.02
1805 2011 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
1806 2012 1.608590 CCGTGCTTCAACTTTGACCAT 59.391 47.619 0.00 0.00 36.83 3.55
1807 2013 2.811431 CCGTGCTTCAACTTTGACCATA 59.189 45.455 0.00 0.00 36.83 2.74
1808 2014 3.252215 CCGTGCTTCAACTTTGACCATAA 59.748 43.478 0.00 0.00 36.83 1.90
1809 2015 4.261405 CCGTGCTTCAACTTTGACCATAAA 60.261 41.667 0.00 0.00 36.83 1.40
1810 2016 5.460646 CGTGCTTCAACTTTGACCATAAAT 58.539 37.500 0.00 0.00 36.83 1.40
1811 2017 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
1812 2018 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
1813 2019 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
1814 2020 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
1815 2021 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
1816 2022 9.476202 GCTTCAACTTTGACCATAAATTTAACT 57.524 29.630 1.21 0.00 36.83 2.24
1826 2032 9.104965 TGACCATAAATTTAACTATCAAGACCG 57.895 33.333 1.21 0.00 0.00 4.79
1827 2033 9.321562 GACCATAAATTTAACTATCAAGACCGA 57.678 33.333 1.21 0.00 0.00 4.69
1828 2034 9.847224 ACCATAAATTTAACTATCAAGACCGAT 57.153 29.630 1.21 0.00 0.00 4.18
1832 2038 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
1846 2052 3.610669 TGCGGCGGGTGCAAAAAT 61.611 55.556 9.78 0.00 45.35 1.82
1847 2053 2.356913 GCGGCGGGTGCAAAAATT 60.357 55.556 9.78 0.00 45.35 1.82
1848 2054 1.080434 GCGGCGGGTGCAAAAATTA 60.080 52.632 9.78 0.00 45.35 1.40
1849 2055 0.459411 GCGGCGGGTGCAAAAATTAT 60.459 50.000 9.78 0.00 45.35 1.28
1850 2056 1.202313 GCGGCGGGTGCAAAAATTATA 60.202 47.619 9.78 0.00 45.35 0.98
1851 2057 2.544903 GCGGCGGGTGCAAAAATTATAT 60.545 45.455 9.78 0.00 45.35 0.86
1852 2058 3.305110 CGGCGGGTGCAAAAATTATATC 58.695 45.455 0.00 0.00 45.35 1.63
1853 2059 3.243234 CGGCGGGTGCAAAAATTATATCA 60.243 43.478 0.00 0.00 45.35 2.15
1854 2060 4.688021 GGCGGGTGCAAAAATTATATCAA 58.312 39.130 0.00 0.00 45.35 2.57
1855 2061 5.296748 GGCGGGTGCAAAAATTATATCAAT 58.703 37.500 0.00 0.00 45.35 2.57
1856 2062 5.177327 GGCGGGTGCAAAAATTATATCAATG 59.823 40.000 0.00 0.00 45.35 2.82
1857 2063 5.982516 GCGGGTGCAAAAATTATATCAATGA 59.017 36.000 0.00 0.00 42.15 2.57
1858 2064 6.478344 GCGGGTGCAAAAATTATATCAATGAA 59.522 34.615 0.00 0.00 42.15 2.57
1859 2065 7.171337 GCGGGTGCAAAAATTATATCAATGAAT 59.829 33.333 0.00 0.00 42.15 2.57
1860 2066 9.044150 CGGGTGCAAAAATTATATCAATGAATT 57.956 29.630 0.00 0.00 0.00 2.17
1911 2117 1.515081 TTTTTCTCCCGCCGTAGTTG 58.485 50.000 0.00 0.00 0.00 3.16
1912 2118 0.320946 TTTTCTCCCGCCGTAGTTGG 60.321 55.000 0.00 0.00 0.00 3.77
1913 2119 1.474332 TTTCTCCCGCCGTAGTTGGT 61.474 55.000 0.00 0.00 0.00 3.67
1914 2120 1.880819 TTCTCCCGCCGTAGTTGGTC 61.881 60.000 0.00 0.00 0.00 4.02
1915 2121 2.283388 TCCCGCCGTAGTTGGTCT 60.283 61.111 0.00 0.00 0.00 3.85
1916 2122 2.183555 CCCGCCGTAGTTGGTCTC 59.816 66.667 0.00 0.00 0.00 3.36
1917 2123 2.202570 CCGCCGTAGTTGGTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1918 2124 2.564975 CGCCGTAGTTGGTCTCGT 59.435 61.111 0.00 0.00 0.00 4.18
1919 2125 1.080974 CGCCGTAGTTGGTCTCGTT 60.081 57.895 0.00 0.00 0.00 3.85
1920 2126 1.342082 CGCCGTAGTTGGTCTCGTTG 61.342 60.000 0.00 0.00 0.00 4.10
1921 2127 1.012486 GCCGTAGTTGGTCTCGTTGG 61.012 60.000 0.00 0.00 0.00 3.77
1922 2128 0.316204 CCGTAGTTGGTCTCGTTGGT 59.684 55.000 0.00 0.00 0.00 3.67
1923 2129 1.269936 CCGTAGTTGGTCTCGTTGGTT 60.270 52.381 0.00 0.00 0.00 3.67
1924 2130 2.030007 CCGTAGTTGGTCTCGTTGGTTA 60.030 50.000 0.00 0.00 0.00 2.85
1925 2131 3.552684 CCGTAGTTGGTCTCGTTGGTTAA 60.553 47.826 0.00 0.00 0.00 2.01
1926 2132 4.050553 CGTAGTTGGTCTCGTTGGTTAAA 58.949 43.478 0.00 0.00 0.00 1.52
1927 2133 4.687483 CGTAGTTGGTCTCGTTGGTTAAAT 59.313 41.667 0.00 0.00 0.00 1.40
1928 2134 5.178067 CGTAGTTGGTCTCGTTGGTTAAATT 59.822 40.000 0.00 0.00 0.00 1.82
1929 2135 6.293027 CGTAGTTGGTCTCGTTGGTTAAATTT 60.293 38.462 0.00 0.00 0.00 1.82
1930 2136 7.095691 CGTAGTTGGTCTCGTTGGTTAAATTTA 60.096 37.037 0.00 0.00 0.00 1.40
1931 2137 7.754851 AGTTGGTCTCGTTGGTTAAATTTAT 57.245 32.000 0.00 0.00 0.00 1.40
1932 2138 7.590279 AGTTGGTCTCGTTGGTTAAATTTATG 58.410 34.615 0.00 0.00 0.00 1.90
1933 2139 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
1934 2140 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
1935 2141 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
1936 2142 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
1937 2143 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
1938 2144 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
1939 2145 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
1940 2146 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
1941 2147 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
1942 2148 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
1943 2149 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
1944 2150 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
1945 2151 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
1951 2157 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
1952 2158 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
1953 2159 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
1954 2160 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
1955 2161 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
1956 2162 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
1957 2163 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
1972 2178 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
1973 2179 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
1974 2180 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
1975 2181 0.941542 GCGGGCGCACTATATTTTGA 59.058 50.000 8.62 0.00 41.49 2.69
1976 2182 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
1977 2183 2.223386 GCGGGCGCACTATATTTTGAAA 60.223 45.455 8.62 0.00 41.49 2.69
1978 2184 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
1979 2185 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
1980 2186 4.260990 CGGGCGCACTATATTTTGAAATGA 60.261 41.667 8.62 0.00 0.00 2.57
1981 2187 5.587289 GGGCGCACTATATTTTGAAATGAA 58.413 37.500 10.83 0.00 0.00 2.57
1982 2188 5.687285 GGGCGCACTATATTTTGAAATGAAG 59.313 40.000 10.83 0.28 0.00 3.02
1983 2189 5.687285 GGCGCACTATATTTTGAAATGAAGG 59.313 40.000 10.83 0.00 0.00 3.46
1984 2190 5.687285 GCGCACTATATTTTGAAATGAAGGG 59.313 40.000 0.30 0.00 0.00 3.95
1985 2191 6.459573 GCGCACTATATTTTGAAATGAAGGGA 60.460 38.462 0.30 0.00 0.00 4.20
1986 2192 7.479980 CGCACTATATTTTGAAATGAAGGGAA 58.520 34.615 0.00 0.00 0.00 3.97
2039 2246 5.627040 GCTTAGGTAAGAACATGCCACTAGT 60.627 44.000 0.71 0.00 35.33 2.57
2072 2279 4.842531 TTATTGTCATGGAGCAGAGGAA 57.157 40.909 0.00 0.00 0.00 3.36
2116 2323 6.368516 CAGCACCCCTAAATTAAACACAATTG 59.631 38.462 3.24 3.24 0.00 2.32
2117 2324 6.268847 AGCACCCCTAAATTAAACACAATTGA 59.731 34.615 13.59 0.00 0.00 2.57
2118 2325 6.589907 GCACCCCTAAATTAAACACAATTGAG 59.410 38.462 13.59 6.93 0.00 3.02
2134 2341 5.183904 ACAATTGAGGTACAATCTTTGCTCC 59.816 40.000 13.59 0.00 46.90 4.70
2170 2377 7.467623 GCTAACAGCTTCCATATATATTGTGC 58.532 38.462 0.00 0.50 38.45 4.57
2171 2378 6.486253 AACAGCTTCCATATATATTGTGCG 57.514 37.500 0.00 0.83 0.00 5.34
2172 2379 4.393062 ACAGCTTCCATATATATTGTGCGC 59.607 41.667 0.00 0.00 0.00 6.09
2173 2380 3.618594 AGCTTCCATATATATTGTGCGCG 59.381 43.478 0.00 0.00 0.00 6.86
2174 2381 3.370978 GCTTCCATATATATTGTGCGCGT 59.629 43.478 8.43 0.00 0.00 6.01
2175 2382 4.492570 GCTTCCATATATATTGTGCGCGTC 60.493 45.833 8.43 0.00 0.00 5.19
2180 2387 0.931202 TATATTGTGCGCGTCGTCCG 60.931 55.000 8.43 0.00 40.40 4.79
2225 2432 7.308782 CACACTTGTGGTATTTCCTATCTTC 57.691 40.000 5.72 0.00 42.10 2.87
2228 2435 8.258708 ACACTTGTGGTATTTCCTATCTTCTAC 58.741 37.037 5.72 0.00 37.07 2.59
2234 2441 9.099454 GTGGTATTTCCTATCTTCTACACAAAG 57.901 37.037 0.00 0.00 37.07 2.77
2235 2442 8.265055 TGGTATTTCCTATCTTCTACACAAAGG 58.735 37.037 0.00 0.00 37.07 3.11
2236 2443 8.483758 GGTATTTCCTATCTTCTACACAAAGGA 58.516 37.037 0.00 0.00 0.00 3.36
2237 2444 9.886132 GTATTTCCTATCTTCTACACAAAGGAA 57.114 33.333 0.00 0.00 39.30 3.36
2238 2445 8.794335 ATTTCCTATCTTCTACACAAAGGAAC 57.206 34.615 0.54 0.00 40.41 3.62
2239 2446 7.974504 TTTCCTATCTTCTACACAAAGGAACT 58.025 34.615 0.54 0.00 40.41 3.01
2255 2462 4.786425 AGGAACTTGCTGAAACTTTCTCT 58.214 39.130 3.22 0.00 27.25 3.10
2256 2463 5.930135 AGGAACTTGCTGAAACTTTCTCTA 58.070 37.500 3.22 0.00 27.25 2.43
2257 2464 5.994668 AGGAACTTGCTGAAACTTTCTCTAG 59.005 40.000 3.22 4.41 27.25 2.43
2258 2465 5.760743 GGAACTTGCTGAAACTTTCTCTAGT 59.239 40.000 3.22 4.92 0.00 2.57
2259 2466 6.073494 GGAACTTGCTGAAACTTTCTCTAGTC 60.073 42.308 3.22 3.31 0.00 2.59
2260 2467 6.168270 ACTTGCTGAAACTTTCTCTAGTCT 57.832 37.500 3.22 0.00 0.00 3.24
2261 2468 6.587273 ACTTGCTGAAACTTTCTCTAGTCTT 58.413 36.000 3.22 0.00 0.00 3.01
2262 2469 6.704050 ACTTGCTGAAACTTTCTCTAGTCTTC 59.296 38.462 3.22 0.00 0.00 2.87
2263 2470 6.161855 TGCTGAAACTTTCTCTAGTCTTCA 57.838 37.500 3.22 0.00 0.00 3.02
2264 2471 6.582636 TGCTGAAACTTTCTCTAGTCTTCAA 58.417 36.000 3.22 0.00 31.35 2.69
2265 2472 6.703607 TGCTGAAACTTTCTCTAGTCTTCAAG 59.296 38.462 3.22 0.00 31.35 3.02
2266 2473 6.704050 GCTGAAACTTTCTCTAGTCTTCAAGT 59.296 38.462 3.22 0.00 31.35 3.16
2267 2474 7.868415 GCTGAAACTTTCTCTAGTCTTCAAGTA 59.132 37.037 3.22 0.00 31.35 2.24
2268 2475 9.187455 CTGAAACTTTCTCTAGTCTTCAAGTAC 57.813 37.037 3.22 0.00 31.35 2.73
2269 2476 8.692710 TGAAACTTTCTCTAGTCTTCAAGTACA 58.307 33.333 3.22 0.00 30.04 2.90
2270 2477 8.874744 AAACTTTCTCTAGTCTTCAAGTACAC 57.125 34.615 0.00 0.00 0.00 2.90
2271 2478 7.584122 ACTTTCTCTAGTCTTCAAGTACACA 57.416 36.000 0.00 0.00 0.00 3.72
2272 2479 8.008513 ACTTTCTCTAGTCTTCAAGTACACAA 57.991 34.615 0.00 0.00 0.00 3.33
2273 2480 8.138712 ACTTTCTCTAGTCTTCAAGTACACAAG 58.861 37.037 0.00 0.00 0.00 3.16
2296 2503 5.067023 AGGAAACTTGCTGAAACTTTCTCTG 59.933 40.000 3.22 0.00 37.44 3.35
2311 2518 4.963318 TTCTCTGGTCTTGAAGTGACAT 57.037 40.909 0.00 0.00 36.26 3.06
2312 2519 4.963318 TCTCTGGTCTTGAAGTGACATT 57.037 40.909 0.00 0.00 36.26 2.71
2313 2520 4.635223 TCTCTGGTCTTGAAGTGACATTG 58.365 43.478 0.00 0.00 36.26 2.82
2314 2521 3.141398 TCTGGTCTTGAAGTGACATTGC 58.859 45.455 0.00 0.00 36.26 3.56
2315 2522 2.880268 CTGGTCTTGAAGTGACATTGCA 59.120 45.455 0.00 0.00 36.26 4.08
2316 2523 2.880268 TGGTCTTGAAGTGACATTGCAG 59.120 45.455 0.00 0.00 36.26 4.41
2317 2524 3.141398 GGTCTTGAAGTGACATTGCAGA 58.859 45.455 0.00 0.00 36.26 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.720758 GCGTCACTGCACTGTAGCG 61.721 63.158 0.00 0.00 37.31 4.26
80 81 2.720758 CGCGTCACTGCACTGTAGC 61.721 63.158 0.00 0.00 34.15 3.58
114 115 1.673329 GCCCTCTTTCTCCTTGACGAC 60.673 57.143 0.00 0.00 0.00 4.34
172 177 1.402456 CCCTGACCTGTTAACGACGAG 60.402 57.143 0.00 0.00 0.00 4.18
177 182 0.974383 ACTCCCCTGACCTGTTAACG 59.026 55.000 0.26 0.00 0.00 3.18
202 207 2.158986 AGTTCCAATGAGATCAGCGGAG 60.159 50.000 0.00 0.00 33.41 4.63
205 210 2.606725 GTGAGTTCCAATGAGATCAGCG 59.393 50.000 0.00 0.00 0.00 5.18
212 217 4.543590 ACAGTAGGTGAGTTCCAATGAG 57.456 45.455 0.00 0.00 0.00 2.90
213 218 4.346709 TCAACAGTAGGTGAGTTCCAATGA 59.653 41.667 0.00 0.00 0.00 2.57
229 234 6.986231 TGCGATAAGATCATTACATCAACAGT 59.014 34.615 0.00 0.00 0.00 3.55
230 235 7.286508 GTGCGATAAGATCATTACATCAACAG 58.713 38.462 0.00 0.00 0.00 3.16
231 236 6.074356 CGTGCGATAAGATCATTACATCAACA 60.074 38.462 0.00 0.00 0.00 3.33
232 237 6.143919 TCGTGCGATAAGATCATTACATCAAC 59.856 38.462 0.00 0.00 0.00 3.18
234 239 5.629435 GTCGTGCGATAAGATCATTACATCA 59.371 40.000 0.00 0.00 0.00 3.07
235 240 5.859114 AGTCGTGCGATAAGATCATTACATC 59.141 40.000 0.00 0.00 0.00 3.06
236 241 5.773575 AGTCGTGCGATAAGATCATTACAT 58.226 37.500 0.00 0.00 0.00 2.29
237 242 5.183014 AGTCGTGCGATAAGATCATTACA 57.817 39.130 0.00 0.00 0.00 2.41
238 243 5.915758 AGAAGTCGTGCGATAAGATCATTAC 59.084 40.000 0.00 0.00 0.00 1.89
243 256 3.953766 TGAGAAGTCGTGCGATAAGATC 58.046 45.455 0.00 0.00 0.00 2.75
256 269 1.216122 GCCGATCTGCATGAGAAGTC 58.784 55.000 4.00 0.00 33.12 3.01
296 309 2.097142 ACGTACTGACCTACGCTTGATC 59.903 50.000 0.00 0.00 42.74 2.92
298 311 1.527034 ACGTACTGACCTACGCTTGA 58.473 50.000 0.00 0.00 42.74 3.02
312 455 5.971895 TTTGTCTGAACCTTTGTACGTAC 57.028 39.130 18.90 18.90 0.00 3.67
313 456 5.049954 GCATTTGTCTGAACCTTTGTACGTA 60.050 40.000 0.00 0.00 0.00 3.57
314 457 4.261031 GCATTTGTCTGAACCTTTGTACGT 60.261 41.667 0.00 0.00 0.00 3.57
315 458 4.219033 GCATTTGTCTGAACCTTTGTACG 58.781 43.478 0.00 0.00 0.00 3.67
354 497 3.822735 CTGCCTTCTTGGAATTTGTCTGA 59.177 43.478 0.00 0.00 38.35 3.27
355 498 3.613432 GCTGCCTTCTTGGAATTTGTCTG 60.613 47.826 0.00 0.00 38.35 3.51
356 499 2.560105 GCTGCCTTCTTGGAATTTGTCT 59.440 45.455 0.00 0.00 38.35 3.41
357 500 2.297033 TGCTGCCTTCTTGGAATTTGTC 59.703 45.455 0.00 0.00 38.35 3.18
358 501 2.298163 CTGCTGCCTTCTTGGAATTTGT 59.702 45.455 0.00 0.00 38.35 2.83
359 502 2.298163 ACTGCTGCCTTCTTGGAATTTG 59.702 45.455 0.00 0.00 38.35 2.32
360 503 2.601905 ACTGCTGCCTTCTTGGAATTT 58.398 42.857 0.00 0.00 38.35 1.82
361 504 2.299326 ACTGCTGCCTTCTTGGAATT 57.701 45.000 0.00 0.00 38.35 2.17
362 505 2.040278 TGTACTGCTGCCTTCTTGGAAT 59.960 45.455 0.00 0.00 38.35 3.01
415 558 2.877168 CTCCATGCATCTAGGAAACAGC 59.123 50.000 0.00 0.00 0.00 4.40
459 602 4.398988 TGTGTTGTTCTTGCTGAAATCTGT 59.601 37.500 0.00 0.00 36.30 3.41
472 615 5.680619 TGTACAAGAATCCTGTGTTGTTCT 58.319 37.500 0.00 0.00 34.92 3.01
515 658 7.826744 ACCTTCTTTAGATGAACTCCTTGATTC 59.173 37.037 0.00 0.00 0.00 2.52
577 759 4.202451 TGTGTACCCTGGGTTTTTACCTAC 60.202 45.833 26.00 13.78 37.09 3.18
629 813 0.884259 TGTCTGTGATTGTGGCACGG 60.884 55.000 13.77 0.00 42.57 4.94
630 814 0.943673 TTGTCTGTGATTGTGGCACG 59.056 50.000 13.77 0.00 39.07 5.34
645 829 2.278094 CGTCGGTGTGTCGATTATTGTC 59.722 50.000 0.00 0.00 41.40 3.18
707 891 0.542938 AGGCTCAGCAGAGTGGTGTA 60.543 55.000 8.03 0.00 45.34 2.90
708 892 1.840650 AGGCTCAGCAGAGTGGTGT 60.841 57.895 8.03 0.00 45.34 4.16
709 893 1.375652 CAGGCTCAGCAGAGTGGTG 60.376 63.158 8.03 0.00 46.40 4.17
710 894 3.067091 CAGGCTCAGCAGAGTGGT 58.933 61.111 8.03 0.00 44.00 4.16
711 895 2.436292 GCAGGCTCAGCAGAGTGG 60.436 66.667 8.03 0.00 44.00 4.00
712 896 2.218037 TACGCAGGCTCAGCAGAGTG 62.218 60.000 8.03 0.33 44.00 3.51
713 897 1.979155 TACGCAGGCTCAGCAGAGT 60.979 57.895 8.03 0.39 44.00 3.24
714 898 1.518133 GTACGCAGGCTCAGCAGAG 60.518 63.158 0.00 0.94 44.96 3.35
715 899 2.573869 GTACGCAGGCTCAGCAGA 59.426 61.111 0.00 0.00 0.00 4.26
716 900 2.619840 ATCGTACGCAGGCTCAGCAG 62.620 60.000 11.24 0.00 0.00 4.24
717 901 2.613739 GATCGTACGCAGGCTCAGCA 62.614 60.000 11.24 0.00 0.00 4.41
718 902 1.946650 GATCGTACGCAGGCTCAGC 60.947 63.158 11.24 0.00 0.00 4.26
719 903 1.655654 CGATCGTACGCAGGCTCAG 60.656 63.158 11.24 0.00 0.00 3.35
720 904 2.048312 CTCGATCGTACGCAGGCTCA 62.048 60.000 15.94 0.00 0.00 4.26
721 905 1.369448 CTCGATCGTACGCAGGCTC 60.369 63.158 15.94 1.34 0.00 4.70
722 906 2.113433 ACTCGATCGTACGCAGGCT 61.113 57.895 15.94 0.00 0.00 4.58
723 907 1.939785 CACTCGATCGTACGCAGGC 60.940 63.158 15.94 0.00 0.00 4.85
741 925 4.111016 GGCGGCGGCAAGTAAACC 62.111 66.667 29.41 3.29 42.47 3.27
1291 1479 5.698832 TGATGTGGTTTCGAATTGAATGTC 58.301 37.500 0.00 0.00 36.22 3.06
1299 1487 7.607991 AGAAAGAACTATGATGTGGTTTCGAAT 59.392 33.333 0.00 0.00 30.92 3.34
1303 1491 8.099364 TGAAGAAAGAACTATGATGTGGTTTC 57.901 34.615 0.00 0.00 30.92 2.78
1304 1492 7.721399 ACTGAAGAAAGAACTATGATGTGGTTT 59.279 33.333 0.00 0.00 30.92 3.27
1307 1495 6.875726 TGACTGAAGAAAGAACTATGATGTGG 59.124 38.462 0.00 0.00 0.00 4.17
1308 1496 7.386025 TGTGACTGAAGAAAGAACTATGATGTG 59.614 37.037 0.00 0.00 0.00 3.21
1309 1497 7.386299 GTGTGACTGAAGAAAGAACTATGATGT 59.614 37.037 0.00 0.00 0.00 3.06
1310 1498 7.148507 GGTGTGACTGAAGAAAGAACTATGATG 60.149 40.741 0.00 0.00 0.00 3.07
1311 1499 6.876257 GGTGTGACTGAAGAAAGAACTATGAT 59.124 38.462 0.00 0.00 0.00 2.45
1312 1500 6.183360 TGGTGTGACTGAAGAAAGAACTATGA 60.183 38.462 0.00 0.00 0.00 2.15
1313 1501 5.991606 TGGTGTGACTGAAGAAAGAACTATG 59.008 40.000 0.00 0.00 0.00 2.23
1314 1502 6.174720 TGGTGTGACTGAAGAAAGAACTAT 57.825 37.500 0.00 0.00 0.00 2.12
1315 1503 5.607939 TGGTGTGACTGAAGAAAGAACTA 57.392 39.130 0.00 0.00 0.00 2.24
1316 1504 4.487714 TGGTGTGACTGAAGAAAGAACT 57.512 40.909 0.00 0.00 0.00 3.01
1317 1505 4.394920 TGTTGGTGTGACTGAAGAAAGAAC 59.605 41.667 0.00 0.00 0.00 3.01
1327 1515 1.651987 AGTCGTTGTTGGTGTGACTG 58.348 50.000 0.00 0.00 38.41 3.51
1336 1524 2.198406 TGTTCTCCGAAGTCGTTGTTG 58.802 47.619 0.00 0.00 37.74 3.33
1351 1539 4.100189 AGACTTGCAGAGTTACACTGTTCT 59.900 41.667 11.11 5.84 39.19 3.01
1396 1584 9.528018 TTTCAGTGTGGTAATTCTTTGAAAATC 57.472 29.630 0.00 0.00 32.32 2.17
1456 1647 5.881443 ACTAGTCTAGTGTCCACATGTAGAC 59.119 44.000 16.40 16.40 41.15 2.59
1474 1665 5.091261 ACATCCCATTTCTGTCACTAGTC 57.909 43.478 0.00 0.00 0.00 2.59
1477 1668 4.532126 ACTGACATCCCATTTCTGTCACTA 59.468 41.667 0.74 0.00 43.10 2.74
1478 1669 3.328931 ACTGACATCCCATTTCTGTCACT 59.671 43.478 0.74 0.00 43.10 3.41
1480 1671 3.327464 TCACTGACATCCCATTTCTGTCA 59.673 43.478 4.72 4.72 45.08 3.58
1481 1672 3.942829 TCACTGACATCCCATTTCTGTC 58.057 45.455 0.00 0.00 39.74 3.51
1482 1673 4.330250 CTTCACTGACATCCCATTTCTGT 58.670 43.478 0.00 0.00 0.00 3.41
1505 1706 6.147492 GCCAAGCAGAGTTATTATCTGATCAG 59.853 42.308 17.07 17.07 45.80 2.90
1517 1722 1.419762 TCCACTTGCCAAGCAGAGTTA 59.580 47.619 3.88 0.00 40.61 2.24
1518 1723 0.183492 TCCACTTGCCAAGCAGAGTT 59.817 50.000 3.88 0.00 40.61 3.01
1519 1724 0.536006 GTCCACTTGCCAAGCAGAGT 60.536 55.000 3.88 0.00 40.61 3.24
1520 1725 0.535780 TGTCCACTTGCCAAGCAGAG 60.536 55.000 3.88 0.00 40.61 3.35
1521 1726 0.111061 ATGTCCACTTGCCAAGCAGA 59.889 50.000 3.88 0.00 40.61 4.26
1535 1741 4.934001 CACTGACATGCTATCCATATGTCC 59.066 45.833 12.42 0.00 46.23 4.02
1537 1743 4.321718 GCACTGACATGCTATCCATATGT 58.678 43.478 1.24 0.00 42.62 2.29
1600 1806 5.776173 ATAGTAGAAATCCACGTGAGAGG 57.224 43.478 19.30 0.00 43.82 3.69
1624 1830 3.374058 CCAGTTGGAGTAAATGGCGTAAG 59.626 47.826 0.00 0.00 46.24 2.34
1657 1863 5.583495 GTGTGTGTATTAGGAGTAGCTGAG 58.417 45.833 0.00 0.00 0.00 3.35
1699 1905 7.201992 GCCCCTCTAGAATATTCTCATAGGATG 60.202 44.444 27.00 21.19 38.70 3.51
1748 1954 6.935240 CTACATTATGGAATGGAGGGAGTA 57.065 41.667 2.44 0.00 46.58 2.59
1749 1955 5.832539 CTACATTATGGAATGGAGGGAGT 57.167 43.478 2.44 0.00 46.58 3.85
1755 1961 6.662755 AGAAAGCACTACATTATGGAATGGA 58.337 36.000 0.00 0.00 45.83 3.41
1756 1962 6.769822 AGAGAAAGCACTACATTATGGAATGG 59.230 38.462 0.00 0.00 45.83 3.16
1757 1963 7.798596 AGAGAAAGCACTACATTATGGAATG 57.201 36.000 0.00 0.00 46.77 2.67
1759 1965 9.905713 AAATAGAGAAAGCACTACATTATGGAA 57.094 29.630 0.00 0.00 0.00 3.53
1760 1966 9.547753 GAAATAGAGAAAGCACTACATTATGGA 57.452 33.333 0.00 0.00 0.00 3.41
1761 1967 8.778358 GGAAATAGAGAAAGCACTACATTATGG 58.222 37.037 0.00 0.00 0.00 2.74
1762 1968 8.491152 CGGAAATAGAGAAAGCACTACATTATG 58.509 37.037 0.00 0.00 0.00 1.90
1763 1969 8.204836 ACGGAAATAGAGAAAGCACTACATTAT 58.795 33.333 0.00 0.00 0.00 1.28
1764 1970 7.491372 CACGGAAATAGAGAAAGCACTACATTA 59.509 37.037 0.00 0.00 0.00 1.90
1765 1971 6.313905 CACGGAAATAGAGAAAGCACTACATT 59.686 38.462 0.00 0.00 0.00 2.71
1766 1972 5.812642 CACGGAAATAGAGAAAGCACTACAT 59.187 40.000 0.00 0.00 0.00 2.29
1767 1973 5.168569 CACGGAAATAGAGAAAGCACTACA 58.831 41.667 0.00 0.00 0.00 2.74
1768 1974 4.033014 GCACGGAAATAGAGAAAGCACTAC 59.967 45.833 0.00 0.00 0.00 2.73
1769 1975 4.081642 AGCACGGAAATAGAGAAAGCACTA 60.082 41.667 0.00 0.00 0.00 2.74
1770 1976 3.003480 GCACGGAAATAGAGAAAGCACT 58.997 45.455 0.00 0.00 0.00 4.40
1771 1977 3.003480 AGCACGGAAATAGAGAAAGCAC 58.997 45.455 0.00 0.00 0.00 4.40
1772 1978 3.334583 AGCACGGAAATAGAGAAAGCA 57.665 42.857 0.00 0.00 0.00 3.91
1773 1979 3.684788 TGAAGCACGGAAATAGAGAAAGC 59.315 43.478 0.00 0.00 0.00 3.51
1774 1980 5.409826 AGTTGAAGCACGGAAATAGAGAAAG 59.590 40.000 0.00 0.00 0.00 2.62
1775 1981 5.305585 AGTTGAAGCACGGAAATAGAGAAA 58.694 37.500 0.00 0.00 0.00 2.52
1776 1982 4.894784 AGTTGAAGCACGGAAATAGAGAA 58.105 39.130 0.00 0.00 0.00 2.87
1777 1983 4.537135 AGTTGAAGCACGGAAATAGAGA 57.463 40.909 0.00 0.00 0.00 3.10
1778 1984 5.179368 TCAAAGTTGAAGCACGGAAATAGAG 59.821 40.000 0.00 0.00 33.55 2.43
1779 1985 5.049680 GTCAAAGTTGAAGCACGGAAATAGA 60.050 40.000 0.00 0.00 39.21 1.98
1780 1986 5.147162 GTCAAAGTTGAAGCACGGAAATAG 58.853 41.667 0.00 0.00 39.21 1.73
1781 1987 4.023536 GGTCAAAGTTGAAGCACGGAAATA 60.024 41.667 0.00 0.00 39.21 1.40
1782 1988 3.243401 GGTCAAAGTTGAAGCACGGAAAT 60.243 43.478 0.00 0.00 39.21 2.17
1783 1989 2.098443 GGTCAAAGTTGAAGCACGGAAA 59.902 45.455 0.00 0.00 39.21 3.13
1784 1990 1.673920 GGTCAAAGTTGAAGCACGGAA 59.326 47.619 0.00 0.00 39.21 4.30
1785 1991 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
1786 1992 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
1787 1993 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
1788 1994 7.713764 AAATTTATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
1789 1995 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
1790 1996 9.476202 AGTTAAATTTATGGTCAAAGTTGAAGC 57.524 29.630 0.00 0.00 39.21 3.86
1800 2006 9.104965 CGGTCTTGATAGTTAAATTTATGGTCA 57.895 33.333 0.00 0.00 0.00 4.02
1801 2007 9.321562 TCGGTCTTGATAGTTAAATTTATGGTC 57.678 33.333 0.00 0.00 0.00 4.02
1802 2008 9.847224 ATCGGTCTTGATAGTTAAATTTATGGT 57.153 29.630 0.00 0.00 0.00 3.55
1806 2012 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
1807 2013 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
1808 2014 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
1809 2015 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
1810 2016 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
1829 2035 1.806461 TAATTTTTGCACCCGCCGCA 61.806 50.000 0.00 0.00 37.32 5.69
1830 2036 0.459411 ATAATTTTTGCACCCGCCGC 60.459 50.000 0.00 0.00 37.32 6.53
1831 2037 2.853731 TATAATTTTTGCACCCGCCG 57.146 45.000 0.00 0.00 37.32 6.46
1832 2038 4.314740 TGATATAATTTTTGCACCCGCC 57.685 40.909 0.00 0.00 37.32 6.13
1833 2039 5.982516 TCATTGATATAATTTTTGCACCCGC 59.017 36.000 0.00 0.00 39.24 6.13
1834 2040 8.592105 ATTCATTGATATAATTTTTGCACCCG 57.408 30.769 0.00 0.00 0.00 5.28
1892 2098 1.515081 CAACTACGGCGGGAGAAAAA 58.485 50.000 13.24 0.00 0.00 1.94
1893 2099 0.320946 CCAACTACGGCGGGAGAAAA 60.321 55.000 13.24 0.00 0.00 2.29
1894 2100 1.294138 CCAACTACGGCGGGAGAAA 59.706 57.895 13.24 0.00 0.00 2.52
1895 2101 1.880819 GACCAACTACGGCGGGAGAA 61.881 60.000 13.24 0.00 0.00 2.87
1896 2102 2.283388 ACCAACTACGGCGGGAGA 60.283 61.111 13.24 0.00 0.00 3.71
1897 2103 2.183555 GACCAACTACGGCGGGAG 59.816 66.667 13.24 10.89 0.00 4.30
1898 2104 2.283388 AGACCAACTACGGCGGGA 60.283 61.111 13.24 0.00 0.00 5.14
1899 2105 2.183555 GAGACCAACTACGGCGGG 59.816 66.667 13.24 4.45 0.00 6.13
1900 2106 2.202570 CGAGACCAACTACGGCGG 60.203 66.667 13.24 0.00 0.00 6.13
1901 2107 1.080974 AACGAGACCAACTACGGCG 60.081 57.895 4.80 4.80 0.00 6.46
1902 2108 1.012486 CCAACGAGACCAACTACGGC 61.012 60.000 0.00 0.00 0.00 5.68
1903 2109 0.316204 ACCAACGAGACCAACTACGG 59.684 55.000 0.00 0.00 0.00 4.02
1904 2110 2.144482 AACCAACGAGACCAACTACG 57.856 50.000 0.00 0.00 0.00 3.51
1905 2111 6.549912 AATTTAACCAACGAGACCAACTAC 57.450 37.500 0.00 0.00 0.00 2.73
1906 2112 8.723311 CATAAATTTAACCAACGAGACCAACTA 58.277 33.333 1.21 0.00 0.00 2.24
1907 2113 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
1908 2114 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
1909 2115 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
1910 2116 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
1911 2117 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
1912 2118 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
1913 2119 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
1914 2120 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
1915 2121 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
1916 2122 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
1917 2123 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
1918 2124 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
1919 2125 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
1920 2126 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
1921 2127 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
1922 2128 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
1923 2129 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
1924 2130 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
1925 2131 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
1926 2132 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
1927 2133 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
1928 2134 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
1929 2135 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
1930 2136 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
1931 2137 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
1932 2138 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
1933 2139 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
1934 2140 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
1935 2141 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
1936 2142 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
1937 2143 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
1938 2144 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
1939 2145 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
1940 2146 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
1955 2161 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
1956 2162 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
1957 2163 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
1958 2164 5.181690 TCATTTCAAAATATAGTGCGCCC 57.818 39.130 4.18 0.00 0.00 6.13
1959 2165 5.687285 CCTTCATTTCAAAATATAGTGCGCC 59.313 40.000 4.18 0.00 0.00 6.53
1960 2166 5.687285 CCCTTCATTTCAAAATATAGTGCGC 59.313 40.000 0.00 0.00 0.00 6.09
1961 2167 7.026631 TCCCTTCATTTCAAAATATAGTGCG 57.973 36.000 0.00 0.00 0.00 5.34
1978 2184 9.559732 CACAACACAGATTATATATTCCCTTCA 57.440 33.333 0.00 0.00 0.00 3.02
1979 2185 9.561069 ACACAACACAGATTATATATTCCCTTC 57.439 33.333 0.00 0.00 0.00 3.46
1980 2186 9.561069 GACACAACACAGATTATATATTCCCTT 57.439 33.333 0.00 0.00 0.00 3.95
1981 2187 8.713971 TGACACAACACAGATTATATATTCCCT 58.286 33.333 0.00 0.00 0.00 4.20
1982 2188 8.774586 GTGACACAACACAGATTATATATTCCC 58.225 37.037 0.00 0.00 40.11 3.97
1983 2189 8.774586 GGTGACACAACACAGATTATATATTCC 58.225 37.037 8.08 0.00 41.88 3.01
1984 2190 9.325198 TGGTGACACAACACAGATTATATATTC 57.675 33.333 8.08 0.00 41.88 1.75
2039 2246 5.890419 TCCATGACAATAAACCATGTATGCA 59.110 36.000 0.00 0.00 36.77 3.96
2045 2252 4.641541 TCTGCTCCATGACAATAAACCATG 59.358 41.667 0.00 0.00 37.87 3.66
2046 2253 4.858850 TCTGCTCCATGACAATAAACCAT 58.141 39.130 0.00 0.00 0.00 3.55
2047 2254 4.264253 CTCTGCTCCATGACAATAAACCA 58.736 43.478 0.00 0.00 0.00 3.67
2048 2255 3.629398 CCTCTGCTCCATGACAATAAACC 59.371 47.826 0.00 0.00 0.00 3.27
2094 2301 7.096551 CCTCAATTGTGTTTAATTTAGGGGTG 58.903 38.462 5.13 0.00 37.59 4.61
2095 2302 6.785466 ACCTCAATTGTGTTTAATTTAGGGGT 59.215 34.615 5.13 3.12 42.05 4.95
2116 2323 3.944087 AGTGGAGCAAAGATTGTACCTC 58.056 45.455 0.00 0.00 0.00 3.85
2117 2324 5.189736 TCATAGTGGAGCAAAGATTGTACCT 59.810 40.000 0.00 0.00 0.00 3.08
2118 2325 5.428253 TCATAGTGGAGCAAAGATTGTACC 58.572 41.667 0.00 0.00 0.00 3.34
2157 2364 3.001070 GGACGACGCGCACAATATATATG 60.001 47.826 5.73 0.00 0.00 1.78
2158 2365 3.176708 GGACGACGCGCACAATATATAT 58.823 45.455 5.73 0.00 0.00 0.86
2159 2366 2.587956 GGACGACGCGCACAATATATA 58.412 47.619 5.73 0.00 0.00 0.86
2160 2367 1.415374 GGACGACGCGCACAATATAT 58.585 50.000 5.73 0.00 0.00 0.86
2161 2368 0.931202 CGGACGACGCGCACAATATA 60.931 55.000 5.73 0.00 34.82 0.86
2162 2369 2.228241 CGGACGACGCGCACAATAT 61.228 57.895 5.73 0.00 34.82 1.28
2163 2370 2.877113 CGGACGACGCGCACAATA 60.877 61.111 5.73 0.00 34.82 1.90
2180 2387 2.671888 GGCCTACTTGAAGAAAGCGTAC 59.328 50.000 0.00 0.00 39.76 3.67
2210 2417 8.483758 TCCTTTGTGTAGAAGATAGGAAATACC 58.516 37.037 0.00 0.00 39.35 2.73
2211 2418 9.886132 TTCCTTTGTGTAGAAGATAGGAAATAC 57.114 33.333 0.00 0.00 37.37 1.89
2212 2419 9.886132 GTTCCTTTGTGTAGAAGATAGGAAATA 57.114 33.333 0.00 0.00 40.75 1.40
2225 2432 5.066505 AGTTTCAGCAAGTTCCTTTGTGTAG 59.933 40.000 0.00 0.00 0.00 2.74
2228 2435 4.376340 AGTTTCAGCAAGTTCCTTTGTG 57.624 40.909 0.00 0.00 0.00 3.33
2234 2441 5.760743 ACTAGAGAAAGTTTCAGCAAGTTCC 59.239 40.000 17.65 0.00 0.00 3.62
2235 2442 6.704050 AGACTAGAGAAAGTTTCAGCAAGTTC 59.296 38.462 17.65 4.74 0.00 3.01
2236 2443 6.587273 AGACTAGAGAAAGTTTCAGCAAGTT 58.413 36.000 17.65 0.00 0.00 2.66
2237 2444 6.168270 AGACTAGAGAAAGTTTCAGCAAGT 57.832 37.500 17.65 13.65 0.00 3.16
2238 2445 6.703607 TGAAGACTAGAGAAAGTTTCAGCAAG 59.296 38.462 17.65 10.93 30.32 4.01
2239 2446 6.582636 TGAAGACTAGAGAAAGTTTCAGCAA 58.417 36.000 17.65 0.00 30.32 3.91
2240 2447 6.161855 TGAAGACTAGAGAAAGTTTCAGCA 57.838 37.500 17.65 1.24 30.32 4.41
2241 2448 6.704050 ACTTGAAGACTAGAGAAAGTTTCAGC 59.296 38.462 17.65 9.04 32.88 4.26
2242 2449 9.187455 GTACTTGAAGACTAGAGAAAGTTTCAG 57.813 37.037 17.65 8.84 32.88 3.02
2243 2450 8.692710 TGTACTTGAAGACTAGAGAAAGTTTCA 58.307 33.333 17.65 0.00 31.10 2.69
2244 2451 8.970293 GTGTACTTGAAGACTAGAGAAAGTTTC 58.030 37.037 7.57 7.57 0.00 2.78
2245 2452 8.475639 TGTGTACTTGAAGACTAGAGAAAGTTT 58.524 33.333 0.00 0.00 0.00 2.66
2246 2453 8.008513 TGTGTACTTGAAGACTAGAGAAAGTT 57.991 34.615 0.00 0.00 0.00 2.66
2247 2454 7.584122 TGTGTACTTGAAGACTAGAGAAAGT 57.416 36.000 0.00 1.90 0.00 2.66
2248 2455 7.596995 CCTTGTGTACTTGAAGACTAGAGAAAG 59.403 40.741 0.00 0.00 0.00 2.62
2249 2456 7.287005 TCCTTGTGTACTTGAAGACTAGAGAAA 59.713 37.037 0.00 0.00 0.00 2.52
2250 2457 6.776116 TCCTTGTGTACTTGAAGACTAGAGAA 59.224 38.462 0.00 0.00 0.00 2.87
2251 2458 6.304624 TCCTTGTGTACTTGAAGACTAGAGA 58.695 40.000 0.00 0.00 0.00 3.10
2252 2459 6.576662 TCCTTGTGTACTTGAAGACTAGAG 57.423 41.667 0.00 0.00 0.00 2.43
2253 2460 6.971726 TTCCTTGTGTACTTGAAGACTAGA 57.028 37.500 0.00 0.00 0.00 2.43
2254 2461 7.210873 AGTTTCCTTGTGTACTTGAAGACTAG 58.789 38.462 0.00 0.00 0.00 2.57
2255 2462 7.120923 AGTTTCCTTGTGTACTTGAAGACTA 57.879 36.000 0.00 0.00 0.00 2.59
2256 2463 5.990668 AGTTTCCTTGTGTACTTGAAGACT 58.009 37.500 0.00 0.00 0.00 3.24
2257 2464 6.487103 CAAGTTTCCTTGTGTACTTGAAGAC 58.513 40.000 0.00 0.00 46.43 3.01
2258 2465 6.677781 CAAGTTTCCTTGTGTACTTGAAGA 57.322 37.500 0.00 0.00 46.43 2.87
2288 2495 4.697514 TGTCACTTCAAGACCAGAGAAAG 58.302 43.478 0.00 0.00 35.15 2.62
2296 2503 3.141398 TCTGCAATGTCACTTCAAGACC 58.859 45.455 0.00 0.00 35.15 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.