Multiple sequence alignment - TraesCS4A01G020400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G020400 chr4A 100.000 5253 0 0 1 5253 14019487 14024739 0.000000e+00 9701
1 TraesCS4A01G020400 chr4A 100.000 1044 0 0 5539 6582 14025025 14026068 0.000000e+00 1929
2 TraesCS4A01G020400 chr4A 98.519 135 2 0 175 309 699033006 699033140 8.530000e-59 239
3 TraesCS4A01G020400 chr4A 91.912 136 11 0 5045 5180 14024394 14024529 2.420000e-44 191
4 TraesCS4A01G020400 chr4A 91.912 136 11 0 4908 5043 14024531 14024666 2.420000e-44 191
5 TraesCS4A01G020400 chr4B 89.736 2309 115 52 2803 5046 566600344 566598093 0.000000e+00 2839
6 TraesCS4A01G020400 chr4B 91.140 1061 54 26 5539 6582 566597963 566596926 0.000000e+00 1402
7 TraesCS4A01G020400 chr4B 93.960 894 42 8 681 1571 566602322 566601438 0.000000e+00 1341
8 TraesCS4A01G020400 chr4B 84.105 994 92 32 1767 2732 566601310 566600355 0.000000e+00 900
9 TraesCS4A01G020400 chr4B 86.000 150 16 3 1600 1749 566601442 566601298 8.840000e-34 156
10 TraesCS4A01G020400 chr4D 93.204 1545 76 13 309 1837 453228072 453226541 0.000000e+00 2244
11 TraesCS4A01G020400 chr4D 93.391 1498 53 20 2803 4269 453225696 453224214 0.000000e+00 2176
12 TraesCS4A01G020400 chr4D 96.712 1034 27 2 4225 5253 453224216 453223185 0.000000e+00 1714
13 TraesCS4A01G020400 chr4D 91.231 1072 41 16 5539 6582 453223121 453222075 0.000000e+00 1410
14 TraesCS4A01G020400 chr4D 81.623 887 81 37 1874 2732 453226539 453225707 0.000000e+00 660
15 TraesCS4A01G020400 chr4D 94.186 172 9 1 1 172 453228413 453228243 1.820000e-65 261
16 TraesCS4A01G020400 chr4D 91.176 136 12 0 4911 5046 453223390 453223255 1.130000e-42 185
17 TraesCS4A01G020400 chr4D 91.176 136 12 0 5048 5183 453223527 453223392 1.130000e-42 185
18 TraesCS4A01G020400 chr1A 99.270 137 1 0 177 313 438321782 438321646 1.420000e-61 248
19 TraesCS4A01G020400 chr1A 98.507 134 2 0 177 310 515766161 515766028 3.070000e-58 237
20 TraesCS4A01G020400 chr6A 99.259 135 1 0 178 312 132950178 132950312 1.830000e-60 244
21 TraesCS4A01G020400 chr3A 97.842 139 2 1 177 314 564914737 564914599 8.530000e-59 239
22 TraesCS4A01G020400 chr3A 97.163 141 3 1 173 312 741623256 741623396 3.070000e-58 237
23 TraesCS4A01G020400 chr3A 97.794 136 3 0 177 312 8031183 8031048 1.100000e-57 235
24 TraesCS4A01G020400 chr7A 98.507 134 2 0 177 310 138526447 138526580 3.070000e-58 237
25 TraesCS4A01G020400 chr3B 98.507 134 2 0 179 312 394944681 394944548 3.070000e-58 237
26 TraesCS4A01G020400 chr3D 78.116 361 45 17 1012 1364 611562855 611563189 1.450000e-46 198
27 TraesCS4A01G020400 chr2B 82.738 168 26 3 15 181 2490319 2490154 5.320000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G020400 chr4A 14019487 14026068 6581 False 3003.000 9701 95.956000 1 6582 4 chr4A.!!$F2 6581
1 TraesCS4A01G020400 chr4B 566596926 566602322 5396 True 1327.600 2839 88.988200 681 6582 5 chr4B.!!$R1 5901
2 TraesCS4A01G020400 chr4D 453222075 453228413 6338 True 1104.375 2244 91.587375 1 6582 8 chr4D.!!$R1 6581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.179108 CGTTCGGAATCCCTCCACTC 60.179 60.000 0.00 0.0 45.74 3.51 F
255 256 0.251077 CAGGCTGAAAAGGTGGAGCT 60.251 55.000 9.42 0.0 0.00 4.09 F
2091 2143 0.248377 GCGCTTGAGCAACATCATCC 60.248 55.000 0.00 0.0 42.21 3.51 F
3042 3124 1.143684 TGGAGCAGGCTTCTCTGTTTT 59.856 47.619 13.77 0.0 37.12 2.43 F
3943 4063 0.762082 TGCCTTGCCCATTTTGACCA 60.762 50.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2057 0.036306 CCAGCTACAAAGGTTCCCGT 59.964 55.000 0.00 0.00 0.00 5.28 R
2141 2193 0.924823 ATCAGAATGCCCTTGAGCCT 59.075 50.000 0.00 0.00 34.76 4.58 R
3384 3466 2.472861 GACACATGAATAGATGACGCCG 59.527 50.000 0.00 0.00 0.00 6.46 R
4011 4132 2.941720 GGTGAGAGTCATCCAAGATTGC 59.058 50.000 0.00 0.00 0.00 3.56 R
5624 5838 1.827344 AGAATCTCACTGATCGGTGCA 59.173 47.619 26.94 17.11 37.16 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.784043 GTGTACTACAGGTTGAATTCAGAAAAT 58.216 33.333 8.41 0.00 0.00 1.82
42 43 1.923356 TTCAGAAAATGACAGGGGGC 58.077 50.000 0.00 0.00 37.77 5.80
97 98 1.374758 CCTGGGCGTCACTTGTCTC 60.375 63.158 0.00 0.00 0.00 3.36
111 112 1.522580 GTCTCGCTCTGATTGGGCC 60.523 63.158 0.00 0.00 0.00 5.80
180 181 5.856126 CACTTTTGCAACTATCGGACTAA 57.144 39.130 0.00 0.00 0.00 2.24
181 182 5.858475 CACTTTTGCAACTATCGGACTAAG 58.142 41.667 0.00 0.00 0.00 2.18
182 183 4.935808 ACTTTTGCAACTATCGGACTAAGG 59.064 41.667 0.00 0.00 0.00 2.69
183 184 3.536956 TTGCAACTATCGGACTAAGGG 57.463 47.619 0.00 0.00 0.00 3.95
185 186 2.693591 TGCAACTATCGGACTAAGGGAG 59.306 50.000 0.00 0.00 0.00 4.30
186 187 2.546162 GCAACTATCGGACTAAGGGAGC 60.546 54.545 0.00 0.00 0.00 4.70
187 188 1.606903 ACTATCGGACTAAGGGAGCG 58.393 55.000 0.00 0.00 0.00 5.03
188 189 1.133853 ACTATCGGACTAAGGGAGCGT 60.134 52.381 0.00 0.00 0.00 5.07
189 190 1.955080 CTATCGGACTAAGGGAGCGTT 59.045 52.381 0.00 0.00 0.00 4.84
190 191 0.745468 ATCGGACTAAGGGAGCGTTC 59.255 55.000 0.00 0.00 0.00 3.95
192 193 1.141234 GGACTAAGGGAGCGTTCGG 59.859 63.158 0.00 0.00 0.00 4.30
193 194 1.318158 GGACTAAGGGAGCGTTCGGA 61.318 60.000 0.00 0.00 0.00 4.55
195 196 1.136500 GACTAAGGGAGCGTTCGGAAT 59.864 52.381 0.00 0.00 0.00 3.01
197 198 0.462789 TAAGGGAGCGTTCGGAATCC 59.537 55.000 0.00 0.00 0.00 3.01
199 200 2.732619 GGGAGCGTTCGGAATCCCT 61.733 63.158 17.08 4.54 46.72 4.20
200 201 1.227292 GGAGCGTTCGGAATCCCTC 60.227 63.158 0.00 0.73 0.00 4.30
201 202 1.227292 GAGCGTTCGGAATCCCTCC 60.227 63.158 0.00 0.00 41.40 4.30
205 206 0.179108 CGTTCGGAATCCCTCCACTC 60.179 60.000 0.00 0.00 45.74 3.51
207 208 0.981277 TTCGGAATCCCTCCACTCCC 60.981 60.000 0.00 0.00 45.74 4.30
209 210 1.382695 GGAATCCCTCCACTCCCGA 60.383 63.158 0.00 0.00 44.67 5.14
211 212 0.688087 GAATCCCTCCACTCCCGAGT 60.688 60.000 0.00 0.00 43.61 4.18
212 213 0.688087 AATCCCTCCACTCCCGAGTC 60.688 60.000 0.00 0.00 40.20 3.36
214 215 2.055042 CCCTCCACTCCCGAGTCAG 61.055 68.421 0.00 0.00 40.20 3.51
215 216 2.716017 CCTCCACTCCCGAGTCAGC 61.716 68.421 0.00 0.00 40.20 4.26
216 217 1.680651 CTCCACTCCCGAGTCAGCT 60.681 63.158 0.00 0.00 40.20 4.24
217 218 1.662438 CTCCACTCCCGAGTCAGCTC 61.662 65.000 0.00 0.00 40.20 4.09
250 251 1.288127 GCTGCAGGCTGAAAAGGTG 59.712 57.895 20.86 0.00 38.06 4.00
252 253 0.538057 CTGCAGGCTGAAAAGGTGGA 60.538 55.000 20.86 0.00 0.00 4.02
255 256 0.251077 CAGGCTGAAAAGGTGGAGCT 60.251 55.000 9.42 0.00 0.00 4.09
257 258 1.246737 GGCTGAAAAGGTGGAGCTGG 61.247 60.000 0.00 0.00 0.00 4.85
258 259 1.246737 GCTGAAAAGGTGGAGCTGGG 61.247 60.000 0.00 0.00 0.00 4.45
259 260 0.401738 CTGAAAAGGTGGAGCTGGGA 59.598 55.000 0.00 0.00 0.00 4.37
260 261 1.005215 CTGAAAAGGTGGAGCTGGGAT 59.995 52.381 0.00 0.00 0.00 3.85
261 262 2.239654 CTGAAAAGGTGGAGCTGGGATA 59.760 50.000 0.00 0.00 0.00 2.59
263 264 4.044308 TGAAAAGGTGGAGCTGGGATATA 58.956 43.478 0.00 0.00 0.00 0.86
264 265 4.141482 TGAAAAGGTGGAGCTGGGATATAC 60.141 45.833 0.00 0.00 0.00 1.47
267 268 0.388649 GTGGAGCTGGGATATACGCG 60.389 60.000 3.53 3.53 0.00 6.01
268 269 1.446272 GGAGCTGGGATATACGCGC 60.446 63.158 5.73 0.00 0.00 6.86
270 271 0.456995 GAGCTGGGATATACGCGCTC 60.457 60.000 5.73 10.29 43.59 5.03
272 273 1.154016 CTGGGATATACGCGCTCCG 60.154 63.158 5.73 0.00 44.21 4.63
303 304 4.697756 CTGGCGGAAGGGCGAACA 62.698 66.667 0.00 0.00 46.04 3.18
304 305 4.697756 TGGCGGAAGGGCGAACAG 62.698 66.667 0.00 0.00 46.04 3.16
322 357 1.942657 CAGGCCCTAAATCGTCACATG 59.057 52.381 0.00 0.00 0.00 3.21
325 360 1.331756 GCCCTAAATCGTCACATGCTG 59.668 52.381 0.00 0.00 0.00 4.41
333 368 2.560504 TCGTCACATGCTGAACAAGTT 58.439 42.857 0.00 0.00 0.00 2.66
343 378 5.801531 TGCTGAACAAGTTCTAGGACTTA 57.198 39.130 16.29 0.01 37.76 2.24
346 381 5.725362 CTGAACAAGTTCTAGGACTTAGGG 58.275 45.833 16.29 7.11 37.76 3.53
367 402 9.802039 TTAGGGTGCTTTTAATTCTTCTTTCTA 57.198 29.630 0.00 0.00 0.00 2.10
379 414 8.729805 AATTCTTCTTTCTAAGTATGGAGCTG 57.270 34.615 0.00 0.00 0.00 4.24
391 426 2.178912 TGGAGCTGGAGGTTTTTACG 57.821 50.000 0.00 0.00 0.00 3.18
395 430 1.918868 GCTGGAGGTTTTTACGCCCG 61.919 60.000 0.00 0.00 0.00 6.13
398 433 1.579964 GGAGGTTTTTACGCCCGGTG 61.580 60.000 0.00 0.00 0.00 4.94
403 438 1.020333 TTTTTACGCCCGGTGGATCG 61.020 55.000 0.00 0.00 0.00 3.69
409 444 1.373590 CGCCCGGTGGATCGAAAAAT 61.374 55.000 0.00 0.00 0.00 1.82
410 445 1.670791 GCCCGGTGGATCGAAAAATA 58.329 50.000 0.00 0.00 0.00 1.40
466 501 4.393371 TCGATTTAATTGCACGTTGGATCA 59.607 37.500 0.00 0.00 0.00 2.92
476 511 5.698832 TGCACGTTGGATCATAAAGAAAAG 58.301 37.500 0.00 0.00 0.00 2.27
478 513 5.106317 GCACGTTGGATCATAAAGAAAAGGA 60.106 40.000 0.00 0.00 0.00 3.36
550 585 5.725110 ATTCAGATTCATTCGGAAACTCG 57.275 39.130 0.00 0.00 41.04 4.18
570 605 5.579119 ACTCGATTAAATCACACGTTGCATA 59.421 36.000 0.00 0.00 0.00 3.14
607 643 9.860898 AGAGATTAAAAATACAATTTGCAGACC 57.139 29.630 0.00 0.00 0.00 3.85
638 674 2.722094 ACAGCTTTTCAGTTGTCACCA 58.278 42.857 0.00 0.00 40.22 4.17
639 675 3.290710 ACAGCTTTTCAGTTGTCACCAT 58.709 40.909 0.00 0.00 40.22 3.55
640 676 4.460263 ACAGCTTTTCAGTTGTCACCATA 58.540 39.130 0.00 0.00 40.22 2.74
641 677 4.275936 ACAGCTTTTCAGTTGTCACCATAC 59.724 41.667 0.00 0.00 40.22 2.39
642 678 4.516698 CAGCTTTTCAGTTGTCACCATACT 59.483 41.667 0.00 0.00 0.00 2.12
643 679 5.700832 CAGCTTTTCAGTTGTCACCATACTA 59.299 40.000 0.00 0.00 0.00 1.82
644 680 6.372659 CAGCTTTTCAGTTGTCACCATACTAT 59.627 38.462 0.00 0.00 0.00 2.12
645 681 7.549134 CAGCTTTTCAGTTGTCACCATACTATA 59.451 37.037 0.00 0.00 0.00 1.31
646 682 7.549488 AGCTTTTCAGTTGTCACCATACTATAC 59.451 37.037 0.00 0.00 0.00 1.47
678 714 5.801531 AATGGATTATGCTGTACCTCGTA 57.198 39.130 0.00 0.00 0.00 3.43
729 765 1.153628 CAGGATCGAACGTGTCCCC 60.154 63.158 7.17 0.00 32.31 4.81
730 766 2.202703 GGATCGAACGTGTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
956 992 4.111053 GTTCCTTCCCCCGCTCCC 62.111 72.222 0.00 0.00 0.00 4.30
1064 1102 2.045536 CTCCAGCTCAGGTTGCCC 60.046 66.667 0.00 0.00 0.00 5.36
1075 1113 3.680786 GTTGCCCTTTCCCACGGC 61.681 66.667 0.00 0.00 43.32 5.68
1250 1288 0.459237 CATCTGGCTTTCTCGCTCGT 60.459 55.000 0.00 0.00 0.00 4.18
1415 1453 0.808755 GTTATGCTGGACGGTTTGGG 59.191 55.000 0.00 0.00 0.00 4.12
1430 1468 4.273318 GGTTTGGGGGATGATAGATATGC 58.727 47.826 0.00 0.00 0.00 3.14
1443 1481 1.001406 AGATATGCCGTCTAGCTTGCC 59.999 52.381 0.00 0.00 0.00 4.52
1751 1803 3.385577 GGTGTTGTGTGTGTGTGTTTTT 58.614 40.909 0.00 0.00 0.00 1.94
1851 1903 6.036517 CGTTTCTAACATTCCTGGAATCAGAG 59.963 42.308 18.87 14.72 43.49 3.35
1852 1904 6.874278 TTCTAACATTCCTGGAATCAGAGA 57.126 37.500 18.87 16.51 43.49 3.10
1853 1905 7.443302 TTCTAACATTCCTGGAATCAGAGAT 57.557 36.000 18.87 5.83 43.49 2.75
1854 1906 7.443302 TCTAACATTCCTGGAATCAGAGATT 57.557 36.000 18.87 9.14 43.49 2.40
1855 1907 7.865820 TCTAACATTCCTGGAATCAGAGATTT 58.134 34.615 18.87 6.64 43.49 2.17
1856 1908 6.770746 AACATTCCTGGAATCAGAGATTTG 57.229 37.500 18.87 8.89 43.49 2.32
1857 1909 6.070951 ACATTCCTGGAATCAGAGATTTGA 57.929 37.500 18.87 0.00 43.49 2.69
1871 1923 5.119279 CAGAGATTTGACTTGTGTCCTTACG 59.881 44.000 0.00 0.00 42.28 3.18
1872 1924 5.010719 AGAGATTTGACTTGTGTCCTTACGA 59.989 40.000 0.00 0.00 42.28 3.43
1940 1992 6.837568 AGATATTGATGGAGGAAAGCAATGTT 59.162 34.615 0.00 0.00 32.13 2.71
1948 2000 4.336713 GGAGGAAAGCAATGTTCAGGTATC 59.663 45.833 0.00 0.00 0.00 2.24
1955 2007 5.994250 AGCAATGTTCAGGTATCACATACT 58.006 37.500 0.00 0.00 36.04 2.12
1959 2011 7.148738 GCAATGTTCAGGTATCACATACTATCG 60.149 40.741 0.00 0.00 36.04 2.92
1965 2017 6.776116 TCAGGTATCACATACTATCGGTTCTT 59.224 38.462 0.00 0.00 36.04 2.52
1968 2020 9.310449 AGGTATCACATACTATCGGTTCTTATT 57.690 33.333 0.00 0.00 36.04 1.40
1974 2026 8.755941 CACATACTATCGGTTCTTATTTCACTG 58.244 37.037 0.00 0.00 0.00 3.66
1975 2027 7.438459 ACATACTATCGGTTCTTATTTCACTGC 59.562 37.037 0.00 0.00 0.00 4.40
1993 2045 3.902261 TGCTGTGCAGTGTATCTTTTG 57.098 42.857 0.00 0.00 33.32 2.44
1994 2046 3.213506 TGCTGTGCAGTGTATCTTTTGT 58.786 40.909 0.00 0.00 33.32 2.83
1995 2047 3.631686 TGCTGTGCAGTGTATCTTTTGTT 59.368 39.130 0.00 0.00 33.32 2.83
2001 2053 8.560355 TGTGCAGTGTATCTTTTGTTATACAT 57.440 30.769 0.00 0.00 39.90 2.29
2005 2057 7.465379 GCAGTGTATCTTTTGTTATACATGCGA 60.465 37.037 0.00 0.00 39.90 5.10
2006 2058 7.846107 CAGTGTATCTTTTGTTATACATGCGAC 59.154 37.037 0.00 0.00 39.90 5.19
2010 2062 2.963548 TTGTTATACATGCGACGGGA 57.036 45.000 0.00 0.00 0.00 5.14
2012 2064 2.542597 TGTTATACATGCGACGGGAAC 58.457 47.619 0.00 0.00 0.00 3.62
2042 2094 3.368948 GCTGGTTCCAAAGGTTGTTTGAA 60.369 43.478 0.00 0.00 0.00 2.69
2074 2126 0.674581 TCTTGGATCTTGGCACTGCG 60.675 55.000 0.00 0.00 0.00 5.18
2075 2127 2.262471 CTTGGATCTTGGCACTGCGC 62.262 60.000 0.00 0.00 41.28 6.09
2076 2128 2.437359 GGATCTTGGCACTGCGCT 60.437 61.111 9.73 0.00 41.91 5.92
2091 2143 0.248377 GCGCTTGAGCAACATCATCC 60.248 55.000 0.00 0.00 42.21 3.51
2097 2149 4.142227 GCTTGAGCAACATCATCCTCATTT 60.142 41.667 0.00 0.00 41.59 2.32
2132 2184 4.985538 AGCTGTTTCCTTTATTCAGTCCA 58.014 39.130 0.00 0.00 0.00 4.02
2141 2193 6.303054 TCCTTTATTCAGTCCAATGTGTCAA 58.697 36.000 0.00 0.00 0.00 3.18
2142 2194 6.430925 TCCTTTATTCAGTCCAATGTGTCAAG 59.569 38.462 0.00 0.00 0.00 3.02
2143 2195 6.349611 CCTTTATTCAGTCCAATGTGTCAAGG 60.350 42.308 0.00 0.00 0.00 3.61
2144 2196 1.896220 TCAGTCCAATGTGTCAAGGC 58.104 50.000 0.00 0.00 0.00 4.35
2145 2197 1.421268 TCAGTCCAATGTGTCAAGGCT 59.579 47.619 0.00 0.00 0.00 4.58
2146 2198 1.808945 CAGTCCAATGTGTCAAGGCTC 59.191 52.381 0.00 0.00 0.00 4.70
2147 2199 1.421268 AGTCCAATGTGTCAAGGCTCA 59.579 47.619 0.00 0.00 0.00 4.26
2171 2223 7.342541 TCAAGGGCATTCTGATCAATAATTTGA 59.657 33.333 0.00 4.50 45.57 2.69
2172 2224 7.047460 AGGGCATTCTGATCAATAATTTGAC 57.953 36.000 0.00 0.00 44.36 3.18
2173 2225 6.837568 AGGGCATTCTGATCAATAATTTGACT 59.162 34.615 0.00 0.00 44.36 3.41
2174 2226 7.343833 AGGGCATTCTGATCAATAATTTGACTT 59.656 33.333 0.00 0.00 44.36 3.01
2175 2227 7.983484 GGGCATTCTGATCAATAATTTGACTTT 59.017 33.333 0.00 0.00 44.36 2.66
2249 2304 6.097356 ACAGTCAATTGCTGATGCTAAAATG 58.903 36.000 26.27 8.88 40.48 2.32
2251 2306 6.472486 CAGTCAATTGCTGATGCTAAAATGAG 59.528 38.462 19.11 0.00 40.48 2.90
2252 2307 6.376299 AGTCAATTGCTGATGCTAAAATGAGA 59.624 34.615 0.00 0.00 40.48 3.27
2253 2308 7.068348 AGTCAATTGCTGATGCTAAAATGAGAT 59.932 33.333 0.00 0.00 40.48 2.75
2256 2311 9.129209 CAATTGCTGATGCTAAAATGAGATATG 57.871 33.333 0.00 0.00 40.48 1.78
2290 2345 8.059798 AGGTTTTCTTCTATCACATCCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
2296 2351 9.770097 TTCTTCTATCACATCCATTTGATCTAC 57.230 33.333 0.00 0.00 34.28 2.59
2297 2352 8.927411 TCTTCTATCACATCCATTTGATCTACA 58.073 33.333 0.00 0.00 34.28 2.74
2298 2353 9.205719 CTTCTATCACATCCATTTGATCTACAG 57.794 37.037 0.00 0.00 34.28 2.74
2299 2354 8.255111 TCTATCACATCCATTTGATCTACAGT 57.745 34.615 0.00 0.00 34.28 3.55
2300 2355 9.367160 TCTATCACATCCATTTGATCTACAGTA 57.633 33.333 0.00 0.00 34.28 2.74
2354 2409 7.177216 TGAAATAATGCAAAGTTCCACTCTGAT 59.823 33.333 9.30 0.00 0.00 2.90
2359 2414 4.202461 TGCAAAGTTCCACTCTGATACCTT 60.202 41.667 0.00 0.00 0.00 3.50
2364 2419 6.681729 AGTTCCACTCTGATACCTTAACAA 57.318 37.500 0.00 0.00 0.00 2.83
2365 2420 6.702329 AGTTCCACTCTGATACCTTAACAAG 58.298 40.000 0.00 0.00 0.00 3.16
2366 2421 6.270231 AGTTCCACTCTGATACCTTAACAAGT 59.730 38.462 0.00 0.00 0.00 3.16
2370 2426 8.822805 TCCACTCTGATACCTTAACAAGTATTT 58.177 33.333 0.00 0.00 0.00 1.40
2406 2462 8.685427 TCATCTGAAATTGTTTACATGTATGGG 58.315 33.333 6.36 0.00 0.00 4.00
2407 2463 8.469200 CATCTGAAATTGTTTACATGTATGGGT 58.531 33.333 6.36 0.00 0.00 4.51
2409 2465 8.952278 TCTGAAATTGTTTACATGTATGGGTAC 58.048 33.333 6.36 1.73 0.00 3.34
2412 2468 9.730420 GAAATTGTTTACATGTATGGGTACATC 57.270 33.333 6.36 0.00 46.06 3.06
2467 2530 3.921119 TCTTTTGTTATGCAGCCAGTG 57.079 42.857 0.00 0.00 0.00 3.66
2516 2579 6.772233 TGATATTCACGGACAATTCCATGATT 59.228 34.615 0.00 0.00 43.60 2.57
2549 2612 1.450211 CGGATTGGCGGGAAGGTAT 59.550 57.895 0.00 0.00 0.00 2.73
2554 2617 3.434596 GGATTGGCGGGAAGGTATTACTT 60.435 47.826 0.00 0.00 0.00 2.24
2564 2627 6.036844 CGGGAAGGTATTACTTTTGTTAGCTC 59.963 42.308 0.00 0.00 0.00 4.09
2566 2629 7.148289 GGGAAGGTATTACTTTTGTTAGCTCAC 60.148 40.741 0.00 0.00 0.00 3.51
2604 2674 4.756135 ACCCTGCTTTAAAACAATGCATTG 59.244 37.500 32.74 32.74 43.26 2.82
2605 2675 4.996122 CCCTGCTTTAAAACAATGCATTGA 59.004 37.500 38.99 18.86 40.14 2.57
2710 2792 4.861210 ACTACTCTGTTGAGACTGTTTCG 58.139 43.478 0.00 0.00 42.73 3.46
2728 2810 6.161381 TGTTTCGGTAAGAATCAACCTACTC 58.839 40.000 3.80 0.00 38.86 2.59
2732 2814 4.380233 CGGTAAGAATCAACCTACTCGTGT 60.380 45.833 0.00 0.00 33.34 4.49
2733 2815 5.476614 GGTAAGAATCAACCTACTCGTGTT 58.523 41.667 0.00 0.00 32.72 3.32
2734 2816 5.575995 GGTAAGAATCAACCTACTCGTGTTC 59.424 44.000 0.00 0.00 32.72 3.18
2736 2818 5.407407 AGAATCAACCTACTCGTGTTCAT 57.593 39.130 0.00 0.00 0.00 2.57
2737 2819 6.525578 AGAATCAACCTACTCGTGTTCATA 57.474 37.500 0.00 0.00 0.00 2.15
2738 2820 7.113658 AGAATCAACCTACTCGTGTTCATAT 57.886 36.000 0.00 0.00 0.00 1.78
2739 2821 8.234136 AGAATCAACCTACTCGTGTTCATATA 57.766 34.615 0.00 0.00 0.00 0.86
2742 2824 5.653330 TCAACCTACTCGTGTTCATATACCA 59.347 40.000 0.00 0.00 0.00 3.25
2743 2825 5.511234 ACCTACTCGTGTTCATATACCAC 57.489 43.478 0.00 0.00 0.00 4.16
2744 2826 4.340381 ACCTACTCGTGTTCATATACCACC 59.660 45.833 0.00 0.00 0.00 4.61
2745 2827 4.340097 CCTACTCGTGTTCATATACCACCA 59.660 45.833 0.00 0.00 0.00 4.17
2746 2828 5.010719 CCTACTCGTGTTCATATACCACCAT 59.989 44.000 0.00 0.00 0.00 3.55
2747 2829 4.945246 ACTCGTGTTCATATACCACCATC 58.055 43.478 0.00 0.00 0.00 3.51
2748 2830 4.649674 ACTCGTGTTCATATACCACCATCT 59.350 41.667 0.00 0.00 0.00 2.90
2749 2831 4.944048 TCGTGTTCATATACCACCATCTG 58.056 43.478 0.00 0.00 0.00 2.90
2750 2832 4.404394 TCGTGTTCATATACCACCATCTGT 59.596 41.667 0.00 0.00 0.00 3.41
2751 2833 5.105106 TCGTGTTCATATACCACCATCTGTT 60.105 40.000 0.00 0.00 0.00 3.16
2752 2834 5.234329 CGTGTTCATATACCACCATCTGTTC 59.766 44.000 0.00 0.00 0.00 3.18
2753 2835 6.349300 GTGTTCATATACCACCATCTGTTCT 58.651 40.000 0.00 0.00 0.00 3.01
2754 2836 6.823689 GTGTTCATATACCACCATCTGTTCTT 59.176 38.462 0.00 0.00 0.00 2.52
2755 2837 7.011482 GTGTTCATATACCACCATCTGTTCTTC 59.989 40.741 0.00 0.00 0.00 2.87
2756 2838 6.806668 TCATATACCACCATCTGTTCTTCA 57.193 37.500 0.00 0.00 0.00 3.02
2757 2839 7.379059 TCATATACCACCATCTGTTCTTCAT 57.621 36.000 0.00 0.00 0.00 2.57
2758 2840 7.805163 TCATATACCACCATCTGTTCTTCATT 58.195 34.615 0.00 0.00 0.00 2.57
2759 2841 7.933577 TCATATACCACCATCTGTTCTTCATTC 59.066 37.037 0.00 0.00 0.00 2.67
2760 2842 4.371624 ACCACCATCTGTTCTTCATTCA 57.628 40.909 0.00 0.00 0.00 2.57
2761 2843 4.330250 ACCACCATCTGTTCTTCATTCAG 58.670 43.478 0.00 0.00 0.00 3.02
2762 2844 4.202503 ACCACCATCTGTTCTTCATTCAGT 60.203 41.667 0.00 0.00 0.00 3.41
2763 2845 4.394300 CCACCATCTGTTCTTCATTCAGTC 59.606 45.833 0.00 0.00 0.00 3.51
2764 2846 5.243981 CACCATCTGTTCTTCATTCAGTCT 58.756 41.667 0.00 0.00 0.00 3.24
2765 2847 5.121925 CACCATCTGTTCTTCATTCAGTCTG 59.878 44.000 0.00 0.00 0.00 3.51
2766 2848 5.221803 ACCATCTGTTCTTCATTCAGTCTGT 60.222 40.000 0.00 0.00 0.00 3.41
2767 2849 6.014242 ACCATCTGTTCTTCATTCAGTCTGTA 60.014 38.462 0.00 0.00 0.00 2.74
2768 2850 6.875726 CCATCTGTTCTTCATTCAGTCTGTAA 59.124 38.462 0.00 0.00 0.00 2.41
2769 2851 7.388776 CCATCTGTTCTTCATTCAGTCTGTAAA 59.611 37.037 0.00 0.00 0.00 2.01
2770 2852 8.777413 CATCTGTTCTTCATTCAGTCTGTAAAA 58.223 33.333 0.00 0.00 0.00 1.52
2771 2853 8.370493 TCTGTTCTTCATTCAGTCTGTAAAAG 57.630 34.615 0.00 0.02 0.00 2.27
2772 2854 8.204160 TCTGTTCTTCATTCAGTCTGTAAAAGA 58.796 33.333 0.00 2.30 0.00 2.52
2773 2855 8.908786 TGTTCTTCATTCAGTCTGTAAAAGAT 57.091 30.769 0.00 0.00 37.23 2.40
2774 2856 8.993121 TGTTCTTCATTCAGTCTGTAAAAGATC 58.007 33.333 0.00 4.95 37.23 2.75
2775 2857 9.213799 GTTCTTCATTCAGTCTGTAAAAGATCT 57.786 33.333 0.00 0.00 37.23 2.75
2776 2858 9.784531 TTCTTCATTCAGTCTGTAAAAGATCTT 57.215 29.630 0.88 0.88 37.23 2.40
2784 2866 8.740906 TCAGTCTGTAAAAGATCTTACTAGTGG 58.259 37.037 8.75 0.00 37.23 4.00
2785 2867 8.740906 CAGTCTGTAAAAGATCTTACTAGTGGA 58.259 37.037 8.75 4.23 37.23 4.02
2786 2868 8.962679 AGTCTGTAAAAGATCTTACTAGTGGAG 58.037 37.037 8.75 3.68 37.23 3.86
2787 2869 8.741841 GTCTGTAAAAGATCTTACTAGTGGAGT 58.258 37.037 8.75 0.00 38.61 3.85
2788 2870 9.310449 TCTGTAAAAGATCTTACTAGTGGAGTT 57.690 33.333 8.75 0.00 39.81 3.01
2789 2871 9.930693 CTGTAAAAGATCTTACTAGTGGAGTTT 57.069 33.333 8.75 8.26 39.81 2.66
2790 2872 9.924650 TGTAAAAGATCTTACTAGTGGAGTTTC 57.075 33.333 8.75 5.86 39.81 2.78
2791 2873 9.924650 GTAAAAGATCTTACTAGTGGAGTTTCA 57.075 33.333 8.75 0.00 39.81 2.69
2792 2874 8.834749 AAAAGATCTTACTAGTGGAGTTTCAC 57.165 34.615 8.75 0.00 39.81 3.18
2794 2876 7.784470 AGATCTTACTAGTGGAGTTTCACTT 57.216 36.000 5.39 0.00 44.74 3.16
2795 2877 8.880991 AGATCTTACTAGTGGAGTTTCACTTA 57.119 34.615 5.39 0.00 44.74 2.24
2796 2878 9.310449 AGATCTTACTAGTGGAGTTTCACTTAA 57.690 33.333 5.39 0.00 44.74 1.85
2799 2881 9.085645 TCTTACTAGTGGAGTTTCACTTAATCA 57.914 33.333 5.39 0.00 44.74 2.57
2800 2882 9.360093 CTTACTAGTGGAGTTTCACTTAATCAG 57.640 37.037 5.39 0.00 44.74 2.90
2801 2883 7.304497 ACTAGTGGAGTTTCACTTAATCAGT 57.696 36.000 0.00 0.00 44.74 3.41
2829 2911 9.775854 ATTCTTTCCAATGATACTATGTCTGAG 57.224 33.333 0.00 0.00 0.00 3.35
2990 3072 5.618056 ATGTGTTGATGTTTGTAGCTCAG 57.382 39.130 0.00 0.00 0.00 3.35
3042 3124 1.143684 TGGAGCAGGCTTCTCTGTTTT 59.856 47.619 13.77 0.00 37.12 2.43
3056 3138 8.510505 GCTTCTCTGTTTTGAATCTTACATCTT 58.489 33.333 0.00 0.00 0.00 2.40
3316 3398 4.933505 TCAATCTGATCCTAGTGCTCTG 57.066 45.455 0.00 0.00 0.00 3.35
3328 3410 6.921914 TCCTAGTGCTCTGTTAACTAAGTTC 58.078 40.000 7.22 2.78 0.00 3.01
3330 3412 7.232941 TCCTAGTGCTCTGTTAACTAAGTTCTT 59.767 37.037 7.22 0.00 0.00 2.52
3331 3413 7.329717 CCTAGTGCTCTGTTAACTAAGTTCTTG 59.670 40.741 7.22 7.57 0.00 3.02
3333 3415 6.702282 AGTGCTCTGTTAACTAAGTTCTTGTC 59.298 38.462 7.22 0.00 0.00 3.18
3334 3416 6.702282 GTGCTCTGTTAACTAAGTTCTTGTCT 59.298 38.462 7.22 0.00 0.00 3.41
3335 3417 7.224949 GTGCTCTGTTAACTAAGTTCTTGTCTT 59.775 37.037 7.22 0.00 0.00 3.01
3384 3466 8.479313 TTGTGTTGATGTATGTGAATCTAGTC 57.521 34.615 0.00 0.00 0.00 2.59
3432 3514 9.679661 TTTTATACCTGCATTTGTAGAGATTCA 57.320 29.630 0.00 0.00 0.00 2.57
3473 3555 7.030768 TGATGTGTTGATTGCATACAAATGAG 58.969 34.615 7.47 0.00 39.77 2.90
3495 3577 8.902540 TGAGTTGTGAAACTAGTTGTATGATT 57.097 30.769 9.34 0.00 38.04 2.57
3530 3612 4.327982 GTGCTCTATCACCATGCTTAGA 57.672 45.455 0.00 0.00 0.00 2.10
3648 3730 7.880059 ACGGAGTACATTTTTACTACAAGTC 57.120 36.000 0.00 0.00 41.94 3.01
3778 3866 1.541147 CATTAACAGCCCTGGTGTGTG 59.459 52.381 0.00 0.00 43.73 3.82
3799 3887 4.161377 GTGCTCTGAATCTTAGACCTCCTT 59.839 45.833 0.00 0.00 0.00 3.36
3858 3946 1.026182 TGCAGCCTTATTGTGCGGAG 61.026 55.000 0.00 0.00 40.23 4.63
3859 3947 1.718757 GCAGCCTTATTGTGCGGAGG 61.719 60.000 0.00 0.00 0.00 4.30
3900 3992 3.025322 TGGATGTCCAGTTTTGTTGGT 57.975 42.857 0.00 0.00 42.01 3.67
3935 4027 1.575419 ATGTTTCATGCCTTGCCCAT 58.425 45.000 0.00 0.00 0.00 4.00
3943 4063 0.762082 TGCCTTGCCCATTTTGACCA 60.762 50.000 0.00 0.00 0.00 4.02
3969 4089 6.939730 TGGCTAATGTCTTCACTTTGTATGAA 59.060 34.615 0.00 0.00 34.89 2.57
4025 4146 2.832672 GGAACGCAATCTTGGATGAC 57.167 50.000 0.00 0.00 0.00 3.06
4058 4179 9.813080 CTTAACTGTTAGTTGATTTTAGCTGTC 57.187 33.333 0.00 0.00 39.11 3.51
4223 4344 7.095649 TGCTAACTGTATGATAAAATAGCTGCG 60.096 37.037 0.00 0.00 36.40 5.18
4229 4350 3.743521 TGATAAAATAGCTGCGCTCCAT 58.256 40.909 9.73 0.00 40.44 3.41
4275 4480 9.691362 GGTTTTCTTGCATTTTTCTCAGTATTA 57.309 29.630 0.00 0.00 0.00 0.98
4303 4508 9.515226 GTGTTCAGGGGCTATATTGATATTTTA 57.485 33.333 0.00 0.00 0.00 1.52
4340 4545 5.082425 AGGTGGAATCTGAAATTTTCTGCT 58.918 37.500 10.33 0.00 0.00 4.24
4535 4741 4.085009 ACTACTGTAGTACTGTGTTCCCC 58.915 47.826 18.42 0.00 37.23 4.81
4715 4926 7.674471 AGCTGGTTGAACTTTTAGATACTTC 57.326 36.000 0.00 0.00 0.00 3.01
4716 4927 7.454225 AGCTGGTTGAACTTTTAGATACTTCT 58.546 34.615 0.00 0.00 35.90 2.85
5008 5222 7.601886 AGATCAGTCATATATGCACTGTAAAGC 59.398 37.037 26.79 18.44 37.30 3.51
5052 5266 9.754382 GAAATGTTAATGCTGTAATTCCATGAT 57.246 29.630 0.00 0.00 0.00 2.45
5068 5282 7.849804 TTCCATGATACTTTCTCTTTGCTAC 57.150 36.000 0.00 0.00 0.00 3.58
5107 5321 5.486419 TGACATACTGCCATCATCCAGATAT 59.514 40.000 0.00 0.00 34.43 1.63
5112 5326 1.736126 GCCATCATCCAGATATGCACG 59.264 52.381 0.00 0.00 34.43 5.34
5149 5363 7.116948 CAGTCATATATGCACTGTAAAGCTACC 59.883 40.741 23.39 0.00 34.36 3.18
5150 5364 6.929049 GTCATATATGCACTGTAAAGCTACCA 59.071 38.462 7.92 0.00 0.00 3.25
5243 5457 5.369404 TCCTCATTTTGTGCCCTCTGATATA 59.631 40.000 0.00 0.00 0.00 0.86
5247 5461 8.169977 TCATTTTGTGCCCTCTGATATATTTC 57.830 34.615 0.00 0.00 0.00 2.17
5248 5462 7.779326 TCATTTTGTGCCCTCTGATATATTTCA 59.221 33.333 0.00 0.00 0.00 2.69
5563 5777 1.409412 CAGACGTGACAAGGAGAACG 58.591 55.000 0.00 0.00 41.64 3.95
5593 5807 9.174166 GATTATTTCCTTTGAGTAAACTGGCTA 57.826 33.333 0.00 0.00 0.00 3.93
5624 5838 4.339530 TCTCAGCTTGTATTGCGATAGTCT 59.660 41.667 0.00 0.00 39.35 3.24
5686 5900 6.424509 CACATGAGCCAACAAACAATAACAAT 59.575 34.615 0.00 0.00 0.00 2.71
5937 6153 7.291411 AGGCTTGTAATCTGTATTATCGACT 57.709 36.000 0.00 0.00 30.42 4.18
6002 6222 4.208253 GCTTTGTTTTCCCACAAATACACG 59.792 41.667 0.00 0.00 43.93 4.49
6025 6250 6.703607 ACGATAAGAAATTACATGCAGAGAGG 59.296 38.462 0.00 0.00 0.00 3.69
6026 6251 6.925718 CGATAAGAAATTACATGCAGAGAGGA 59.074 38.462 0.00 0.00 0.00 3.71
6027 6252 7.116090 CGATAAGAAATTACATGCAGAGAGGAG 59.884 40.741 0.00 0.00 0.00 3.69
6122 6348 6.149474 CCTTAGTTAAGTTGCTGCTAACACAT 59.851 38.462 14.29 5.85 33.02 3.21
6124 6350 6.727824 AGTTAAGTTGCTGCTAACACATAG 57.272 37.500 14.29 0.00 33.02 2.23
6192 6419 5.415077 ACAATCTAACTCTAGTGTACACGCT 59.585 40.000 19.93 6.67 40.27 5.07
6217 6444 1.728825 CGCATTTCCATGTTCGGTGTG 60.729 52.381 0.00 0.00 32.28 3.82
6223 6450 0.888736 CCATGTTCGGTGTGAAGGCA 60.889 55.000 0.00 0.00 37.23 4.75
6241 6468 3.144285 GTGGGTTCACTCCGTGGA 58.856 61.111 0.00 0.00 40.58 4.02
6242 6469 1.004918 GTGGGTTCACTCCGTGGAG 60.005 63.158 14.35 14.35 46.91 3.86
6347 6577 2.912690 TGTGGACGTTGGTGATGTAA 57.087 45.000 0.00 0.00 0.00 2.41
6384 6614 0.031585 CCTCACGTCGAAGTGGAACA 59.968 55.000 27.36 10.44 41.43 3.18
6400 6630 1.122019 AACACCGCCTTCTCCTCTGT 61.122 55.000 0.00 0.00 0.00 3.41
6410 6640 3.278574 CTTCTCCTCTGTCGACATCTCT 58.721 50.000 20.40 0.00 0.00 3.10
6420 6650 0.104487 CGACATCTCTGCCATGAGCT 59.896 55.000 0.00 0.00 44.23 4.09
6451 6681 1.331756 GCCATTGTCGAACCTGCATAG 59.668 52.381 0.00 0.00 0.00 2.23
6452 6682 2.905075 CCATTGTCGAACCTGCATAGA 58.095 47.619 0.00 0.00 0.00 1.98
6477 6726 1.136141 CGTAGCAGCTTGAGCAAACAG 60.136 52.381 0.00 0.00 45.16 3.16
6502 6751 6.764308 GCATATAAATGATGCTACATGGGT 57.236 37.500 0.00 0.00 45.14 4.51
6508 6757 1.561076 TGATGCTACATGGGTCTGCTT 59.439 47.619 0.00 0.00 0.00 3.91
6533 6782 1.075600 GGGTGGGGGAGAGAGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
6534 6783 1.585651 GGGTGGGGGAGAGAGAGAGA 61.586 65.000 0.00 0.00 0.00 3.10
6535 6784 0.106217 GGTGGGGGAGAGAGAGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
6536 6785 0.923358 GTGGGGGAGAGAGAGAGAGA 59.077 60.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.239120 CCTGTCATTTTCTGAATTCAACCTGT 60.239 38.462 9.88 0.00 35.07 4.00
32 33 1.496444 TTGCACATAGCCCCCTGTCA 61.496 55.000 0.00 0.00 44.83 3.58
65 66 4.003788 CAGGTGGTCGAGCCGGTT 62.004 66.667 12.85 0.00 41.21 4.44
76 77 2.669569 CAAGTGACGCCCAGGTGG 60.670 66.667 1.72 0.00 37.09 4.61
85 86 0.238553 TCAGAGCGAGACAAGTGACG 59.761 55.000 0.00 0.00 0.00 4.35
86 87 2.645730 ATCAGAGCGAGACAAGTGAC 57.354 50.000 0.00 0.00 0.00 3.67
87 88 2.353109 CCAATCAGAGCGAGACAAGTGA 60.353 50.000 0.00 0.00 0.00 3.41
97 98 2.515523 CCTGGCCCAATCAGAGCG 60.516 66.667 0.00 0.00 34.36 5.03
111 112 3.630769 CCAGATGTGATGATTTGGTCCTG 59.369 47.826 0.00 0.00 0.00 3.86
172 173 1.651240 CGAACGCTCCCTTAGTCCGA 61.651 60.000 0.00 0.00 0.00 4.55
173 174 1.226603 CGAACGCTCCCTTAGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
175 176 0.529378 TTCCGAACGCTCCCTTAGTC 59.471 55.000 0.00 0.00 0.00 2.59
176 177 1.136500 GATTCCGAACGCTCCCTTAGT 59.864 52.381 0.00 0.00 0.00 2.24
177 178 1.538419 GGATTCCGAACGCTCCCTTAG 60.538 57.143 0.00 0.00 0.00 2.18
178 179 0.462789 GGATTCCGAACGCTCCCTTA 59.537 55.000 0.00 0.00 0.00 2.69
179 180 1.221021 GGATTCCGAACGCTCCCTT 59.779 57.895 0.00 0.00 0.00 3.95
180 181 2.732619 GGGATTCCGAACGCTCCCT 61.733 63.158 10.09 0.00 43.45 4.20
181 182 2.203029 GGGATTCCGAACGCTCCC 60.203 66.667 3.05 3.05 40.60 4.30
182 183 1.227292 GAGGGATTCCGAACGCTCC 60.227 63.158 12.64 4.39 39.20 4.70
183 184 1.227292 GGAGGGATTCCGAACGCTC 60.227 63.158 14.16 14.16 42.58 5.03
192 193 0.688087 ACTCGGGAGTGGAGGGATTC 60.688 60.000 0.00 0.00 40.75 2.52
193 194 0.688087 GACTCGGGAGTGGAGGGATT 60.688 60.000 5.98 0.00 42.66 3.01
195 196 2.359404 GACTCGGGAGTGGAGGGA 59.641 66.667 5.98 0.00 42.66 4.20
197 198 2.716017 GCTGACTCGGGAGTGGAGG 61.716 68.421 5.98 0.00 42.66 4.30
199 200 1.679305 GAGCTGACTCGGGAGTGGA 60.679 63.158 5.98 0.00 42.66 4.02
200 201 2.888863 GAGCTGACTCGGGAGTGG 59.111 66.667 5.98 0.51 42.66 4.00
232 233 1.288127 CACCTTTTCAGCCTGCAGC 59.712 57.895 8.66 3.91 44.25 5.25
233 234 0.538057 TCCACCTTTTCAGCCTGCAG 60.538 55.000 6.78 6.78 0.00 4.41
235 236 1.871126 GCTCCACCTTTTCAGCCTGC 61.871 60.000 0.00 0.00 0.00 4.85
236 237 0.251077 AGCTCCACCTTTTCAGCCTG 60.251 55.000 0.00 0.00 31.81 4.85
237 238 0.251077 CAGCTCCACCTTTTCAGCCT 60.251 55.000 0.00 0.00 31.81 4.58
238 239 1.246737 CCAGCTCCACCTTTTCAGCC 61.247 60.000 0.00 0.00 31.81 4.85
242 243 3.584733 ATATCCCAGCTCCACCTTTTC 57.415 47.619 0.00 0.00 0.00 2.29
243 244 3.181454 CGTATATCCCAGCTCCACCTTTT 60.181 47.826 0.00 0.00 0.00 2.27
244 245 2.368875 CGTATATCCCAGCTCCACCTTT 59.631 50.000 0.00 0.00 0.00 3.11
245 246 1.971357 CGTATATCCCAGCTCCACCTT 59.029 52.381 0.00 0.00 0.00 3.50
246 247 1.633774 CGTATATCCCAGCTCCACCT 58.366 55.000 0.00 0.00 0.00 4.00
247 248 0.037232 GCGTATATCCCAGCTCCACC 60.037 60.000 0.00 0.00 0.00 4.61
248 249 0.388649 CGCGTATATCCCAGCTCCAC 60.389 60.000 0.00 0.00 0.00 4.02
250 251 1.446272 GCGCGTATATCCCAGCTCC 60.446 63.158 8.43 0.00 0.00 4.70
252 253 1.587054 GAGCGCGTATATCCCAGCT 59.413 57.895 8.43 0.00 37.69 4.24
255 256 2.959372 CGGAGCGCGTATATCCCA 59.041 61.111 8.43 0.00 0.00 4.37
286 287 4.697756 TGTTCGCCCTTCCGCCAG 62.698 66.667 0.00 0.00 0.00 4.85
287 288 4.697756 CTGTTCGCCCTTCCGCCA 62.698 66.667 0.00 0.00 0.00 5.69
297 298 0.743345 ACGATTTAGGGCCTGTTCGC 60.743 55.000 25.03 9.08 0.00 4.70
298 299 1.287425 GACGATTTAGGGCCTGTTCG 58.713 55.000 24.08 24.08 0.00 3.95
299 300 2.007608 GTGACGATTTAGGGCCTGTTC 58.992 52.381 18.53 9.16 0.00 3.18
300 301 1.349688 TGTGACGATTTAGGGCCTGTT 59.650 47.619 18.53 0.00 0.00 3.16
301 302 0.981183 TGTGACGATTTAGGGCCTGT 59.019 50.000 18.53 4.37 0.00 4.00
302 303 1.942657 CATGTGACGATTTAGGGCCTG 59.057 52.381 18.53 0.23 0.00 4.85
303 304 1.747206 GCATGTGACGATTTAGGGCCT 60.747 52.381 12.58 12.58 0.00 5.19
304 305 0.663153 GCATGTGACGATTTAGGGCC 59.337 55.000 0.00 0.00 0.00 5.80
305 306 1.331756 CAGCATGTGACGATTTAGGGC 59.668 52.381 0.00 0.00 0.00 5.19
307 308 3.684305 TGTTCAGCATGTGACGATTTAGG 59.316 43.478 0.00 0.00 37.40 2.69
322 357 5.172205 CCTAAGTCCTAGAACTTGTTCAGC 58.828 45.833 4.36 1.90 39.74 4.26
325 360 5.480205 CACCCTAAGTCCTAGAACTTGTTC 58.520 45.833 4.36 5.44 39.74 3.18
333 368 6.886178 ATTAAAAGCACCCTAAGTCCTAGA 57.114 37.500 0.00 0.00 0.00 2.43
343 378 8.706322 TTAGAAAGAAGAATTAAAAGCACCCT 57.294 30.769 0.00 0.00 0.00 4.34
367 402 4.388577 AAAAACCTCCAGCTCCATACTT 57.611 40.909 0.00 0.00 0.00 2.24
378 413 1.302671 CCGGGCGTAAAAACCTCCA 60.303 57.895 0.00 0.00 0.00 3.86
379 414 1.302752 ACCGGGCGTAAAAACCTCC 60.303 57.895 6.32 0.00 0.00 4.30
391 426 1.670791 TATTTTTCGATCCACCGGGC 58.329 50.000 6.32 0.00 0.00 6.13
409 444 9.502035 AGTTCATCGGGAAATAGGGAATATATA 57.498 33.333 0.00 0.00 37.23 0.86
410 445 8.393959 AGTTCATCGGGAAATAGGGAATATAT 57.606 34.615 0.00 0.00 37.23 0.86
449 484 6.993786 TCTTTATGATCCAACGTGCAATTA 57.006 33.333 0.00 0.00 0.00 1.40
521 556 6.299805 TCCGAATGAATCTGAATATAGGGG 57.700 41.667 0.00 0.00 0.00 4.79
532 567 7.843490 TTTAATCGAGTTTCCGAATGAATCT 57.157 32.000 0.00 0.00 42.22 2.40
536 571 6.592220 TGTGATTTAATCGAGTTTCCGAATGA 59.408 34.615 0.00 0.00 42.22 2.57
537 572 6.682863 GTGTGATTTAATCGAGTTTCCGAATG 59.317 38.462 0.00 0.00 42.22 2.67
550 585 9.210426 CTTTACTATGCAACGTGTGATTTAATC 57.790 33.333 0.00 0.00 0.00 1.75
589 624 8.462589 AAAAATGGGTCTGCAAATTGTATTTT 57.537 26.923 0.00 0.00 0.00 1.82
678 714 1.747355 CAATTGGCTTTCTCATCGCCT 59.253 47.619 0.00 0.00 44.09 5.52
729 765 2.566010 CGGGTGGCCATTTGAACG 59.434 61.111 9.72 3.89 0.00 3.95
730 766 1.595093 CTCCGGGTGGCCATTTGAAC 61.595 60.000 9.72 0.00 34.14 3.18
804 840 3.450115 CGTGGACCGGGGAGAGAC 61.450 72.222 6.32 0.00 0.00 3.36
893 929 3.632896 CCACATGGGCCCAAATCC 58.367 61.111 32.58 0.00 0.00 3.01
956 992 1.687493 GGGAGTGAGAGACTGGGGG 60.687 68.421 0.00 0.00 33.83 5.40
961 997 1.005450 GAGAGTGGGGAGTGAGAGACT 59.995 57.143 0.00 0.00 37.76 3.24
962 998 1.470051 GAGAGTGGGGAGTGAGAGAC 58.530 60.000 0.00 0.00 0.00 3.36
963 999 0.333312 GGAGAGTGGGGAGTGAGAGA 59.667 60.000 0.00 0.00 0.00 3.10
964 1000 0.334676 AGGAGAGTGGGGAGTGAGAG 59.665 60.000 0.00 0.00 0.00 3.20
1283 1321 4.326278 TCGATAACAGATCAAAACGAGCAC 59.674 41.667 0.00 0.00 30.15 4.40
1415 1453 4.261825 GCTAGACGGCATATCTATCATCCC 60.262 50.000 0.00 0.00 0.00 3.85
1430 1468 2.187946 CAGGGGCAAGCTAGACGG 59.812 66.667 0.00 0.00 0.00 4.79
1456 1494 3.365820 GCAGCAGAATGATTCAAAAACGG 59.634 43.478 8.03 0.00 39.69 4.44
1686 1724 0.385751 CGACGTCCTGCAGGTGATAT 59.614 55.000 31.58 14.28 36.34 1.63
1751 1803 4.141287 CACACACAACATCCTTCCCTAAA 58.859 43.478 0.00 0.00 0.00 1.85
1752 1804 3.750371 CACACACAACATCCTTCCCTAA 58.250 45.455 0.00 0.00 0.00 2.69
1753 1805 2.552155 GCACACACAACATCCTTCCCTA 60.552 50.000 0.00 0.00 0.00 3.53
1826 1878 5.874810 TCTGATTCCAGGAATGTTAGAAACG 59.125 40.000 20.21 0.31 40.76 3.60
1833 1885 6.376581 GTCAAATCTCTGATTCCAGGAATGTT 59.623 38.462 20.21 0.00 40.76 2.71
1851 1903 5.265407 GTCGTAAGGACACAAGTCAAATC 57.735 43.478 0.00 0.00 46.80 2.17
1871 1923 0.037590 TAACCTGCACATGTGGGGTC 59.962 55.000 26.55 10.81 0.00 4.46
1872 1924 0.480690 TTAACCTGCACATGTGGGGT 59.519 50.000 26.55 20.39 0.00 4.95
1901 1953 6.013898 CCATCAATATCTCCTTAGCCTTCTCA 60.014 42.308 0.00 0.00 0.00 3.27
1940 1992 6.304624 AGAACCGATAGTATGTGATACCTGA 58.695 40.000 0.00 0.00 36.40 3.86
1948 2000 8.755941 CAGTGAAATAAGAACCGATAGTATGTG 58.244 37.037 0.00 0.00 0.00 3.21
1955 2007 5.730550 ACAGCAGTGAAATAAGAACCGATA 58.269 37.500 0.00 0.00 0.00 2.92
1974 2026 3.904136 ACAAAAGATACACTGCACAGC 57.096 42.857 0.00 0.00 0.00 4.40
1975 2027 8.028540 TGTATAACAAAAGATACACTGCACAG 57.971 34.615 0.00 0.00 34.40 3.66
1993 2045 1.862827 GGTTCCCGTCGCATGTATAAC 59.137 52.381 0.00 0.00 0.00 1.89
1994 2046 1.758280 AGGTTCCCGTCGCATGTATAA 59.242 47.619 0.00 0.00 0.00 0.98
1995 2047 1.405872 AGGTTCCCGTCGCATGTATA 58.594 50.000 0.00 0.00 0.00 1.47
2001 2053 0.320073 CTACAAAGGTTCCCGTCGCA 60.320 55.000 0.00 0.00 0.00 5.10
2005 2057 0.036306 CCAGCTACAAAGGTTCCCGT 59.964 55.000 0.00 0.00 0.00 5.28
2006 2058 0.036306 ACCAGCTACAAAGGTTCCCG 59.964 55.000 0.00 0.00 29.58 5.14
2012 2064 3.923017 CTTTGGAACCAGCTACAAAGG 57.077 47.619 14.26 3.11 43.56 3.11
2017 2069 2.583143 ACAACCTTTGGAACCAGCTAC 58.417 47.619 0.00 0.00 34.12 3.58
2042 2094 7.934120 GCCAAGATCCAAGACAGTATAATAAGT 59.066 37.037 0.00 0.00 0.00 2.24
2074 2126 2.362736 TGAGGATGATGTTGCTCAAGC 58.637 47.619 0.00 0.00 40.57 4.01
2075 2127 5.578005 AAATGAGGATGATGTTGCTCAAG 57.422 39.130 0.00 0.00 45.50 3.02
2076 2128 5.988310 AAAATGAGGATGATGTTGCTCAA 57.012 34.783 0.00 0.00 45.50 3.02
2097 2149 8.635765 AAAGGAAACAGCTATCTGAACAATAA 57.364 30.769 0.00 0.00 42.95 1.40
2132 2184 1.915141 CCCTTGAGCCTTGACACATT 58.085 50.000 0.00 0.00 0.00 2.71
2141 2193 0.924823 ATCAGAATGCCCTTGAGCCT 59.075 50.000 0.00 0.00 34.76 4.58
2142 2194 1.316651 GATCAGAATGCCCTTGAGCC 58.683 55.000 0.00 0.00 34.76 4.70
2143 2195 2.048444 TGATCAGAATGCCCTTGAGC 57.952 50.000 0.00 0.00 34.76 4.26
2144 2196 6.896021 ATTATTGATCAGAATGCCCTTGAG 57.104 37.500 0.00 0.00 34.76 3.02
2145 2197 7.342541 TCAAATTATTGATCAGAATGCCCTTGA 59.657 33.333 0.00 4.76 40.59 3.02
2146 2198 7.437267 GTCAAATTATTGATCAGAATGCCCTTG 59.563 37.037 0.00 2.69 46.67 3.61
2147 2199 7.343833 AGTCAAATTATTGATCAGAATGCCCTT 59.656 33.333 0.00 0.00 46.67 3.95
2212 2267 5.988561 GCAATTGACTGTTTATGGGTTGAAA 59.011 36.000 10.34 0.00 0.00 2.69
2227 2282 6.376299 TCTCATTTTAGCATCAGCAATTGACT 59.624 34.615 10.34 2.94 45.49 3.41
2229 2284 6.762702 TCTCATTTTAGCATCAGCAATTGA 57.237 33.333 10.34 0.00 45.49 2.57
2277 2332 8.027524 AGTACTGTAGATCAAATGGATGTGAT 57.972 34.615 0.00 0.00 36.00 3.06
2278 2333 7.423844 AGTACTGTAGATCAAATGGATGTGA 57.576 36.000 0.00 0.00 36.00 3.58
2323 2378 8.483307 GTGGAACTTTGCATTATTTCATGATT 57.517 30.769 0.00 0.00 0.00 2.57
2381 2437 8.469200 ACCCATACATGTAAACAATTTCAGATG 58.531 33.333 10.14 0.00 0.00 2.90
2406 2462 3.187227 CCAATGCTTATCTGCCGATGTAC 59.813 47.826 0.20 0.00 0.00 2.90
2407 2463 3.402110 CCAATGCTTATCTGCCGATGTA 58.598 45.455 0.20 0.00 0.00 2.29
2409 2465 1.068748 GCCAATGCTTATCTGCCGATG 60.069 52.381 0.20 0.00 33.53 3.84
2411 2467 2.706636 GCCAATGCTTATCTGCCGA 58.293 52.632 0.00 0.00 33.53 5.54
2452 2515 2.030007 GCTTTTCACTGGCTGCATAACA 60.030 45.455 0.50 0.00 0.00 2.41
2456 2519 1.538687 GGGCTTTTCACTGGCTGCAT 61.539 55.000 0.50 0.00 0.00 3.96
2467 2530 2.887152 ACAGATTGTCACTGGGCTTTTC 59.113 45.455 0.00 0.00 39.38 2.29
2516 2579 3.243704 CCAATCCGGAAAAGCTCAACAAA 60.244 43.478 9.01 0.00 36.56 2.83
2554 2617 9.528489 AGGAATAAATAAAGGTGAGCTAACAAA 57.472 29.630 2.93 0.00 0.00 2.83
2564 2627 6.365520 AGCAGGGTAGGAATAAATAAAGGTG 58.634 40.000 0.00 0.00 0.00 4.00
2566 2629 7.898014 AAAGCAGGGTAGGAATAAATAAAGG 57.102 36.000 0.00 0.00 0.00 3.11
2574 2637 7.363443 GCATTGTTTTAAAGCAGGGTAGGAATA 60.363 37.037 4.87 0.00 0.00 1.75
2575 2638 6.574269 GCATTGTTTTAAAGCAGGGTAGGAAT 60.574 38.462 4.87 0.00 0.00 3.01
2604 2674 6.382869 AGATTAGCCATTAGTGCAATGTTC 57.617 37.500 0.00 0.00 42.22 3.18
2605 2675 6.780457 AAGATTAGCCATTAGTGCAATGTT 57.220 33.333 0.00 0.00 42.22 2.71
2633 2707 9.060347 CAAATAATTAGTATCAGGACACTGCAT 57.940 33.333 0.00 0.00 44.54 3.96
2634 2708 8.046708 ACAAATAATTAGTATCAGGACACTGCA 58.953 33.333 0.00 0.00 44.54 4.41
2635 2709 8.438676 ACAAATAATTAGTATCAGGACACTGC 57.561 34.615 0.00 0.00 44.54 4.40
2710 2792 5.069501 ACACGAGTAGGTTGATTCTTACC 57.930 43.478 0.00 0.00 34.54 2.85
2728 2810 4.693283 ACAGATGGTGGTATATGAACACG 58.307 43.478 0.00 0.00 36.02 4.49
2732 2814 7.194112 TGAAGAACAGATGGTGGTATATGAA 57.806 36.000 0.00 0.00 0.00 2.57
2733 2815 6.806668 TGAAGAACAGATGGTGGTATATGA 57.193 37.500 0.00 0.00 0.00 2.15
2734 2816 7.716560 TGAATGAAGAACAGATGGTGGTATATG 59.283 37.037 0.00 0.00 0.00 1.78
2736 2818 7.092891 ACTGAATGAAGAACAGATGGTGGTATA 60.093 37.037 0.00 0.00 35.85 1.47
2737 2819 6.065976 TGAATGAAGAACAGATGGTGGTAT 57.934 37.500 0.00 0.00 0.00 2.73
2738 2820 5.013079 ACTGAATGAAGAACAGATGGTGGTA 59.987 40.000 0.00 0.00 35.85 3.25
2739 2821 4.202503 ACTGAATGAAGAACAGATGGTGGT 60.203 41.667 0.00 0.00 35.85 4.16
2742 2824 5.221803 ACAGACTGAATGAAGAACAGATGGT 60.222 40.000 10.08 0.00 35.85 3.55
2743 2825 5.243981 ACAGACTGAATGAAGAACAGATGG 58.756 41.667 10.08 0.00 35.85 3.51
2744 2826 7.895975 TTACAGACTGAATGAAGAACAGATG 57.104 36.000 10.08 0.00 35.85 2.90
2745 2827 8.908786 TTTTACAGACTGAATGAAGAACAGAT 57.091 30.769 10.08 0.00 35.85 2.90
2746 2828 8.204160 TCTTTTACAGACTGAATGAAGAACAGA 58.796 33.333 10.08 0.00 35.85 3.41
2747 2829 8.370493 TCTTTTACAGACTGAATGAAGAACAG 57.630 34.615 10.08 0.00 37.62 3.16
2748 2830 8.908786 ATCTTTTACAGACTGAATGAAGAACA 57.091 30.769 10.08 0.00 32.83 3.18
2749 2831 9.213799 AGATCTTTTACAGACTGAATGAAGAAC 57.786 33.333 10.08 10.83 32.83 3.01
2750 2832 9.784531 AAGATCTTTTACAGACTGAATGAAGAA 57.215 29.630 10.08 0.17 32.83 2.52
2758 2840 8.740906 CCACTAGTAAGATCTTTTACAGACTGA 58.259 37.037 14.36 0.00 36.27 3.41
2759 2841 8.740906 TCCACTAGTAAGATCTTTTACAGACTG 58.259 37.037 14.36 0.00 36.27 3.51
2760 2842 8.880991 TCCACTAGTAAGATCTTTTACAGACT 57.119 34.615 14.36 11.95 36.27 3.24
2761 2843 8.741841 ACTCCACTAGTAAGATCTTTTACAGAC 58.258 37.037 14.36 4.44 36.36 3.51
2762 2844 8.880991 ACTCCACTAGTAAGATCTTTTACAGA 57.119 34.615 14.36 2.22 36.36 3.41
2763 2845 9.930693 AAACTCCACTAGTAAGATCTTTTACAG 57.069 33.333 14.36 8.60 37.50 2.74
2764 2846 9.924650 GAAACTCCACTAGTAAGATCTTTTACA 57.075 33.333 14.36 0.00 37.50 2.41
2765 2847 9.924650 TGAAACTCCACTAGTAAGATCTTTTAC 57.075 33.333 14.36 6.78 37.50 2.01
2766 2848 9.924650 GTGAAACTCCACTAGTAAGATCTTTTA 57.075 33.333 14.36 6.27 37.50 1.52
2767 2849 8.834749 GTGAAACTCCACTAGTAAGATCTTTT 57.165 34.615 14.36 5.38 37.50 2.27
2990 3072 7.834068 TTCAAACTGAGATAATGACAGCTAC 57.166 36.000 0.00 0.00 35.38 3.58
3042 3124 9.230122 TGCATAAAACAGAAGATGTAAGATTCA 57.770 29.630 0.00 0.00 43.00 2.57
3127 3209 7.644157 GTGGAAACATACTTTCAGTTTGAGAAC 59.356 37.037 0.00 0.00 46.14 3.01
3284 3366 3.755378 GGATCAGATTGAACAAGCACAGT 59.245 43.478 5.64 0.00 0.00 3.55
3330 3412 7.710907 GGCACAACTATGTATGAGAATAAGACA 59.289 37.037 0.00 0.00 37.82 3.41
3331 3413 7.710907 TGGCACAACTATGTATGAGAATAAGAC 59.289 37.037 0.00 0.00 37.82 3.01
3333 3415 7.712639 AGTGGCACAACTATGTATGAGAATAAG 59.287 37.037 21.41 0.00 44.16 1.73
3334 3416 7.564793 AGTGGCACAACTATGTATGAGAATAA 58.435 34.615 21.41 0.00 44.16 1.40
3335 3417 7.124573 AGTGGCACAACTATGTATGAGAATA 57.875 36.000 21.41 0.00 44.16 1.75
3345 3427 3.314913 TCAACACAAGTGGCACAACTATG 59.685 43.478 21.41 12.38 44.16 2.23
3384 3466 2.472861 GACACATGAATAGATGACGCCG 59.527 50.000 0.00 0.00 0.00 6.46
3495 3577 5.423290 TGATAGAGCACCATCAGAAGAGAAA 59.577 40.000 0.00 0.00 0.00 2.52
3498 3580 4.619973 GTGATAGAGCACCATCAGAAGAG 58.380 47.826 0.00 0.00 31.99 2.85
3648 3730 9.973450 ATTGCTAAGACAGTAATACTATCACAG 57.027 33.333 1.28 0.00 37.76 3.66
3778 3866 5.128663 AGAAAGGAGGTCTAAGATTCAGAGC 59.871 44.000 0.00 0.00 40.13 4.09
3900 3992 9.045223 GCATGAAACATAACTATCATACAGACA 57.955 33.333 0.00 0.00 31.59 3.41
3935 4027 5.048083 GTGAAGACATTAGCCATGGTCAAAA 60.048 40.000 14.67 3.20 37.17 2.44
3943 4063 7.112122 TCATACAAAGTGAAGACATTAGCCAT 58.888 34.615 0.00 0.00 0.00 4.40
4007 4128 3.265791 AGAGTCATCCAAGATTGCGTTC 58.734 45.455 0.00 0.00 0.00 3.95
4011 4132 2.941720 GGTGAGAGTCATCCAAGATTGC 59.058 50.000 0.00 0.00 0.00 3.56
4025 4146 8.608844 AAATCAACTAACAGTTAAGGTGAGAG 57.391 34.615 12.92 0.00 36.03 3.20
4058 4179 4.932200 CCTACCAACACTAGAAAGAGCAAG 59.068 45.833 0.00 0.00 0.00 4.01
4180 4301 8.853126 ACAGTTAGCAATGAATATGTTATGCAT 58.147 29.630 3.79 3.79 41.42 3.96
4181 4302 8.224389 ACAGTTAGCAATGAATATGTTATGCA 57.776 30.769 0.00 0.00 36.30 3.96
4275 4480 5.589367 ATCAATATAGCCCCTGAACACAT 57.411 39.130 0.00 0.00 0.00 3.21
4303 4508 7.890127 TCAGATTCCACCTTCAAGAATGTAAAT 59.110 33.333 0.00 0.00 30.52 1.40
4340 4545 3.448093 TGGAGATAAACCACCATGCAA 57.552 42.857 0.00 0.00 32.03 4.08
4743 4954 4.068599 TGGACAGCGAATAATCACAACAA 58.931 39.130 0.00 0.00 0.00 2.83
5029 5243 9.578576 AGTATCATGGAATTACAGCATTAACAT 57.421 29.630 0.00 0.00 0.00 2.71
5043 5257 8.270744 AGTAGCAAAGAGAAAGTATCATGGAAT 58.729 33.333 0.00 0.00 0.00 3.01
5052 5266 4.324267 GGCCAAGTAGCAAAGAGAAAGTA 58.676 43.478 0.00 0.00 0.00 2.24
5112 5326 7.119407 AGTGCATATATGACTGATCTGCATTTC 59.881 37.037 17.10 0.00 39.94 2.17
5128 5342 8.621286 GTTTTGGTAGCTTTACAGTGCATATAT 58.379 33.333 0.00 0.00 0.00 0.86
5563 5777 7.970614 CAGTTTACTCAAAGGAAATAATCAGGC 59.029 37.037 0.00 0.00 0.00 4.85
5593 5807 4.082571 GCAATACAAGCTGAGAAATGGTGT 60.083 41.667 0.00 0.00 0.00 4.16
5624 5838 1.827344 AGAATCTCACTGATCGGTGCA 59.173 47.619 26.94 17.11 37.16 4.57
5686 5900 2.609610 GGGCTCTGGTACACCCCA 60.610 66.667 0.00 0.00 36.29 4.96
5784 6000 2.398754 TTCTTCACCTGGGACTCAGA 57.601 50.000 3.10 0.00 46.18 3.27
6002 6222 8.147058 TCTCCTCTCTGCATGTAATTTCTTATC 58.853 37.037 0.00 0.00 0.00 1.75
6025 6250 9.665264 CCTAAACAACAGAAAATACTTGTTCTC 57.335 33.333 0.00 0.00 31.66 2.87
6026 6251 9.403583 TCCTAAACAACAGAAAATACTTGTTCT 57.596 29.630 0.00 0.00 34.37 3.01
6027 6252 9.447040 GTCCTAAACAACAGAAAATACTTGTTC 57.553 33.333 0.00 0.00 32.25 3.18
6122 6348 4.278170 CCACTGAAGAAACACATTTGGCTA 59.722 41.667 0.00 0.00 0.00 3.93
6124 6350 3.068024 TCCACTGAAGAAACACATTTGGC 59.932 43.478 0.00 0.00 0.00 4.52
6192 6419 2.540736 GAACATGGAAATGCGCCGCA 62.541 55.000 16.69 16.69 44.86 5.69
6206 6433 0.108585 ACTGCCTTCACACCGAACAT 59.891 50.000 0.00 0.00 0.00 2.71
6234 6461 2.603473 CACCTCCACCTCCACGGA 60.603 66.667 0.00 0.00 36.31 4.69
6237 6464 4.394712 CGCCACCTCCACCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
6284 6514 3.017581 AAAGGGAGGGGCATCGCT 61.018 61.111 3.17 3.17 43.67 4.93
6347 6577 1.736586 GAGCATCGACTGGACGGAT 59.263 57.895 0.00 0.00 0.00 4.18
6384 6614 2.344203 CGACAGAGGAGAAGGCGGT 61.344 63.158 0.00 0.00 0.00 5.68
6400 6630 0.103755 GCTCATGGCAGAGATGTCGA 59.896 55.000 15.26 0.00 41.35 4.20
6410 6640 2.685017 ACGGAGGAGCTCATGGCA 60.685 61.111 17.19 0.00 44.79 4.92
6451 6681 1.471964 CTCAAGCTGCTACGACGATC 58.528 55.000 0.90 0.00 0.00 3.69
6452 6682 0.526524 GCTCAAGCTGCTACGACGAT 60.527 55.000 0.90 0.00 38.21 3.73
6502 6751 2.036098 CACCCATGGCCAAGCAGA 59.964 61.111 10.96 0.00 0.00 4.26
6522 6771 3.480470 CAGGTCATCTCTCTCTCTCTCC 58.520 54.545 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.