Multiple sequence alignment - TraesCS4A01G019800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G019800 chr4A 100.000 3137 0 0 1 3137 13653580 13656716 0.000000e+00 5794
1 TraesCS4A01G019800 chr4B 90.854 1651 79 35 816 2432 567178300 567176688 0.000000e+00 2146
2 TraesCS4A01G019800 chr4B 92.982 570 25 7 2572 3137 567176500 567175942 0.000000e+00 817
3 TraesCS4A01G019800 chr4B 91.623 382 19 7 2605 2982 522237949 522238321 1.670000e-142 516
4 TraesCS4A01G019800 chr4B 82.278 237 22 5 424 659 567178704 567178487 1.490000e-43 187
5 TraesCS4A01G019800 chr4B 97.260 73 2 0 2430 2502 567176663 567176591 1.180000e-24 124
6 TraesCS4A01G019800 chr4D 86.060 1736 140 45 737 2425 453458121 453456441 0.000000e+00 1772
7 TraesCS4A01G019800 chr4D 93.233 532 26 6 2609 3137 453456368 453455844 0.000000e+00 774
8 TraesCS4A01G019800 chr4D 86.626 329 22 6 434 753 453458458 453458143 8.330000e-91 344
9 TraesCS4A01G019800 chr5B 91.731 387 19 7 2605 2987 441419128 441419505 2.770000e-145 525
10 TraesCS4A01G019800 chr7B 92.857 252 12 4 2605 2855 531362346 531362100 8.270000e-96 361
11 TraesCS4A01G019800 chr7B 90.714 140 6 5 2851 2987 531353760 531353625 2.490000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G019800 chr4A 13653580 13656716 3136 False 5794.000000 5794 100.000000 1 3137 1 chr4A.!!$F1 3136
1 TraesCS4A01G019800 chr4B 567175942 567178704 2762 True 818.500000 2146 90.843500 424 3137 4 chr4B.!!$R1 2713
2 TraesCS4A01G019800 chr4D 453455844 453458458 2614 True 963.333333 1772 88.639667 434 3137 3 chr4D.!!$R1 2703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.035820 GCGTCCCCCACTTTATCACA 60.036 55.0 0.0 0.0 0.00 3.58 F
575 577 0.037734 AGCTTTGGTTTACCCCTCCG 59.962 55.0 0.0 0.0 34.29 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 1913 0.463204 CTCAGGCTGACGATGATGGT 59.537 55.0 14.43 0.0 0.0 3.55 R
2514 2711 0.105224 TCCTGGCGACGTCAAAGAAA 59.895 50.0 17.16 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.548171 TCTTTAAAGAAAAACAGGTCACACG 58.452 36.000 15.57 0.00 30.73 4.49
29 30 2.844122 AAGAAAAACAGGTCACACGC 57.156 45.000 0.00 0.00 0.00 5.34
30 31 2.038387 AGAAAAACAGGTCACACGCT 57.962 45.000 0.00 0.00 0.00 5.07
31 32 3.188159 AGAAAAACAGGTCACACGCTA 57.812 42.857 0.00 0.00 0.00 4.26
32 33 2.870411 AGAAAAACAGGTCACACGCTAC 59.130 45.455 0.00 0.00 0.00 3.58
33 34 2.319136 AAAACAGGTCACACGCTACA 57.681 45.000 0.00 0.00 0.00 2.74
34 35 2.543777 AAACAGGTCACACGCTACAT 57.456 45.000 0.00 0.00 0.00 2.29
35 36 1.795768 AACAGGTCACACGCTACATG 58.204 50.000 0.00 0.00 33.79 3.21
36 37 0.679505 ACAGGTCACACGCTACATGT 59.320 50.000 2.69 2.69 35.93 3.21
37 38 1.336887 ACAGGTCACACGCTACATGTC 60.337 52.381 0.00 0.00 35.92 3.06
38 39 0.966179 AGGTCACACGCTACATGTCA 59.034 50.000 0.00 0.00 0.00 3.58
39 40 1.068474 GGTCACACGCTACATGTCAC 58.932 55.000 0.00 0.00 0.00 3.67
40 41 1.336887 GGTCACACGCTACATGTCACT 60.337 52.381 0.00 0.00 0.00 3.41
41 42 1.721389 GTCACACGCTACATGTCACTG 59.279 52.381 0.00 0.00 0.00 3.66
42 43 1.611491 TCACACGCTACATGTCACTGA 59.389 47.619 0.00 0.00 0.00 3.41
43 44 1.721389 CACACGCTACATGTCACTGAC 59.279 52.381 0.00 1.86 0.00 3.51
44 45 1.339929 ACACGCTACATGTCACTGACA 59.660 47.619 14.26 14.26 46.90 3.58
45 46 1.988467 CACGCTACATGTCACTGACAG 59.012 52.381 16.80 11.25 46.04 3.51
46 47 0.994995 CGCTACATGTCACTGACAGC 59.005 55.000 16.80 13.03 46.04 4.40
47 48 0.994995 GCTACATGTCACTGACAGCG 59.005 55.000 16.80 12.54 46.04 5.18
48 49 1.633561 CTACATGTCACTGACAGCGG 58.366 55.000 16.80 11.19 46.04 5.52
49 50 0.246360 TACATGTCACTGACAGCGGG 59.754 55.000 16.80 9.04 46.04 6.13
50 51 2.046892 ATGTCACTGACAGCGGGC 60.047 61.111 16.80 0.00 46.04 6.13
51 52 3.612247 ATGTCACTGACAGCGGGCC 62.612 63.158 16.80 0.00 46.04 5.80
86 87 2.964978 GCCAAGGCAGCGTTGATT 59.035 55.556 26.00 0.00 41.49 2.57
87 88 1.290009 GCCAAGGCAGCGTTGATTT 59.710 52.632 26.00 0.00 41.49 2.17
88 89 0.319813 GCCAAGGCAGCGTTGATTTT 60.320 50.000 26.00 0.00 41.49 1.82
89 90 1.421382 CCAAGGCAGCGTTGATTTTG 58.579 50.000 26.00 7.83 31.88 2.44
90 91 1.269726 CCAAGGCAGCGTTGATTTTGT 60.270 47.619 26.00 0.00 31.88 2.83
91 92 2.030363 CCAAGGCAGCGTTGATTTTGTA 60.030 45.455 26.00 0.00 31.88 2.41
92 93 3.367292 CCAAGGCAGCGTTGATTTTGTAT 60.367 43.478 26.00 0.00 31.88 2.29
93 94 3.764885 AGGCAGCGTTGATTTTGTATC 57.235 42.857 2.38 0.00 0.00 2.24
94 95 2.423538 AGGCAGCGTTGATTTTGTATCC 59.576 45.455 2.38 0.00 0.00 2.59
95 96 2.163412 GGCAGCGTTGATTTTGTATCCA 59.837 45.455 2.38 0.00 0.00 3.41
96 97 3.366883 GGCAGCGTTGATTTTGTATCCAA 60.367 43.478 2.38 0.00 0.00 3.53
97 98 4.233789 GCAGCGTTGATTTTGTATCCAAA 58.766 39.130 2.38 0.00 38.77 3.28
98 99 4.089923 GCAGCGTTGATTTTGTATCCAAAC 59.910 41.667 2.38 0.00 40.19 2.93
99 100 5.218885 CAGCGTTGATTTTGTATCCAAACA 58.781 37.500 0.00 0.00 40.19 2.83
100 101 5.116983 CAGCGTTGATTTTGTATCCAAACAC 59.883 40.000 0.00 0.00 40.19 3.32
101 102 4.087930 GCGTTGATTTTGTATCCAAACACG 59.912 41.667 0.00 0.00 40.19 4.49
102 103 5.444983 CGTTGATTTTGTATCCAAACACGA 58.555 37.500 0.00 0.00 40.19 4.35
103 104 6.083630 CGTTGATTTTGTATCCAAACACGAT 58.916 36.000 0.00 0.00 40.19 3.73
104 105 6.580791 CGTTGATTTTGTATCCAAACACGATT 59.419 34.615 0.00 0.00 40.19 3.34
105 106 7.746916 CGTTGATTTTGTATCCAAACACGATTA 59.253 33.333 0.00 0.00 40.19 1.75
106 107 9.061610 GTTGATTTTGTATCCAAACACGATTAG 57.938 33.333 0.00 0.00 40.19 1.73
107 108 7.757526 TGATTTTGTATCCAAACACGATTAGG 58.242 34.615 0.00 0.00 40.19 2.69
108 109 7.608376 TGATTTTGTATCCAAACACGATTAGGA 59.392 33.333 0.00 0.00 40.19 2.94
109 110 6.730960 TTTGTATCCAAACACGATTAGGAC 57.269 37.500 0.00 0.00 35.67 3.85
110 111 5.670792 TGTATCCAAACACGATTAGGACT 57.329 39.130 0.00 0.00 0.00 3.85
111 112 5.416083 TGTATCCAAACACGATTAGGACTG 58.584 41.667 0.00 0.00 0.00 3.51
112 113 4.553330 ATCCAAACACGATTAGGACTGT 57.447 40.909 0.00 0.00 0.00 3.55
113 114 5.670792 ATCCAAACACGATTAGGACTGTA 57.329 39.130 0.00 0.00 0.00 2.74
114 115 5.670792 TCCAAACACGATTAGGACTGTAT 57.329 39.130 0.00 0.00 0.00 2.29
115 116 6.045072 TCCAAACACGATTAGGACTGTATT 57.955 37.500 0.00 0.00 0.00 1.89
116 117 6.469410 TCCAAACACGATTAGGACTGTATTT 58.531 36.000 0.00 0.00 0.00 1.40
117 118 6.370442 TCCAAACACGATTAGGACTGTATTTG 59.630 38.462 0.00 0.00 0.00 2.32
118 119 5.796350 AACACGATTAGGACTGTATTTGC 57.204 39.130 0.00 0.00 0.00 3.68
119 120 4.827692 ACACGATTAGGACTGTATTTGCA 58.172 39.130 0.00 0.00 0.00 4.08
120 121 4.630069 ACACGATTAGGACTGTATTTGCAC 59.370 41.667 0.00 0.00 0.00 4.57
121 122 4.629634 CACGATTAGGACTGTATTTGCACA 59.370 41.667 0.00 0.00 0.00 4.57
122 123 5.121611 CACGATTAGGACTGTATTTGCACAA 59.878 40.000 0.00 0.00 0.00 3.33
123 124 5.351465 ACGATTAGGACTGTATTTGCACAAG 59.649 40.000 0.00 0.00 0.00 3.16
124 125 5.567138 ATTAGGACTGTATTTGCACAAGC 57.433 39.130 0.00 0.00 42.57 4.01
125 126 2.162681 AGGACTGTATTTGCACAAGCC 58.837 47.619 0.00 0.00 41.13 4.35
126 127 1.135689 GGACTGTATTTGCACAAGCCG 60.136 52.381 0.00 0.00 41.13 5.52
127 128 1.804151 GACTGTATTTGCACAAGCCGA 59.196 47.619 0.00 0.00 41.13 5.54
128 129 2.420022 GACTGTATTTGCACAAGCCGAT 59.580 45.455 0.00 0.00 41.13 4.18
129 130 2.420022 ACTGTATTTGCACAAGCCGATC 59.580 45.455 0.00 0.00 41.13 3.69
130 131 1.742831 TGTATTTGCACAAGCCGATCC 59.257 47.619 0.00 0.00 41.13 3.36
131 132 1.742831 GTATTTGCACAAGCCGATCCA 59.257 47.619 0.00 0.00 41.13 3.41
132 133 1.255882 ATTTGCACAAGCCGATCCAA 58.744 45.000 0.00 0.00 41.13 3.53
133 134 0.597568 TTTGCACAAGCCGATCCAAG 59.402 50.000 0.00 0.00 41.13 3.61
134 135 0.537143 TTGCACAAGCCGATCCAAGT 60.537 50.000 0.00 0.00 41.13 3.16
135 136 0.537143 TGCACAAGCCGATCCAAGTT 60.537 50.000 0.00 0.00 41.13 2.66
136 137 1.271108 TGCACAAGCCGATCCAAGTTA 60.271 47.619 0.00 0.00 41.13 2.24
137 138 2.017049 GCACAAGCCGATCCAAGTTAT 58.983 47.619 0.00 0.00 33.58 1.89
138 139 2.423538 GCACAAGCCGATCCAAGTTATT 59.576 45.455 0.00 0.00 33.58 1.40
139 140 3.731867 GCACAAGCCGATCCAAGTTATTG 60.732 47.826 0.00 0.00 33.46 1.90
140 141 2.423538 ACAAGCCGATCCAAGTTATTGC 59.576 45.455 0.00 0.00 34.91 3.56
141 142 2.418368 AGCCGATCCAAGTTATTGCA 57.582 45.000 0.00 0.00 34.91 4.08
142 143 2.017049 AGCCGATCCAAGTTATTGCAC 58.983 47.619 0.00 0.00 34.91 4.57
143 144 1.065551 GCCGATCCAAGTTATTGCACC 59.934 52.381 0.00 0.00 34.91 5.01
144 145 2.364632 CCGATCCAAGTTATTGCACCA 58.635 47.619 0.00 0.00 34.91 4.17
145 146 2.355756 CCGATCCAAGTTATTGCACCAG 59.644 50.000 0.00 0.00 34.91 4.00
146 147 3.009723 CGATCCAAGTTATTGCACCAGT 58.990 45.455 0.00 0.00 34.91 4.00
147 148 3.440173 CGATCCAAGTTATTGCACCAGTT 59.560 43.478 0.00 0.00 34.91 3.16
148 149 4.437390 CGATCCAAGTTATTGCACCAGTTC 60.437 45.833 0.00 0.00 34.91 3.01
149 150 3.826524 TCCAAGTTATTGCACCAGTTCA 58.173 40.909 0.00 0.00 34.91 3.18
150 151 4.211125 TCCAAGTTATTGCACCAGTTCAA 58.789 39.130 0.00 0.00 34.91 2.69
151 152 4.832266 TCCAAGTTATTGCACCAGTTCAAT 59.168 37.500 1.47 1.47 36.87 2.57
152 153 4.925054 CCAAGTTATTGCACCAGTTCAATG 59.075 41.667 6.01 0.00 34.95 2.82
153 154 4.178545 AGTTATTGCACCAGTTCAATGC 57.821 40.909 6.01 0.00 39.88 3.56
156 157 2.804549 TGCACCAGTTCAATGCACA 58.195 47.368 0.00 0.00 44.17 4.57
157 158 0.385029 TGCACCAGTTCAATGCACAC 59.615 50.000 0.00 0.00 44.17 3.82
158 159 0.318955 GCACCAGTTCAATGCACACC 60.319 55.000 0.00 0.00 39.23 4.16
159 160 1.031235 CACCAGTTCAATGCACACCA 58.969 50.000 0.00 0.00 0.00 4.17
160 161 1.032014 ACCAGTTCAATGCACACCAC 58.968 50.000 0.00 0.00 0.00 4.16
161 162 1.031235 CCAGTTCAATGCACACCACA 58.969 50.000 0.00 0.00 0.00 4.17
162 163 1.408340 CCAGTTCAATGCACACCACAA 59.592 47.619 0.00 0.00 0.00 3.33
163 164 2.544277 CCAGTTCAATGCACACCACAAG 60.544 50.000 0.00 0.00 0.00 3.16
164 165 2.099592 CAGTTCAATGCACACCACAAGT 59.900 45.455 0.00 0.00 0.00 3.16
165 166 2.760092 AGTTCAATGCACACCACAAGTT 59.240 40.909 0.00 0.00 0.00 2.66
166 167 3.115554 GTTCAATGCACACCACAAGTTC 58.884 45.455 0.00 0.00 0.00 3.01
167 168 2.653726 TCAATGCACACCACAAGTTCT 58.346 42.857 0.00 0.00 0.00 3.01
168 169 3.814625 TCAATGCACACCACAAGTTCTA 58.185 40.909 0.00 0.00 0.00 2.10
169 170 3.814842 TCAATGCACACCACAAGTTCTAG 59.185 43.478 0.00 0.00 0.00 2.43
170 171 1.593196 TGCACACCACAAGTTCTAGC 58.407 50.000 0.00 0.00 0.00 3.42
171 172 1.134250 TGCACACCACAAGTTCTAGCA 60.134 47.619 0.00 0.00 0.00 3.49
172 173 2.154462 GCACACCACAAGTTCTAGCAT 58.846 47.619 0.00 0.00 0.00 3.79
173 174 2.160417 GCACACCACAAGTTCTAGCATC 59.840 50.000 0.00 0.00 0.00 3.91
174 175 3.402110 CACACCACAAGTTCTAGCATCA 58.598 45.455 0.00 0.00 0.00 3.07
175 176 3.814842 CACACCACAAGTTCTAGCATCAA 59.185 43.478 0.00 0.00 0.00 2.57
176 177 4.275689 CACACCACAAGTTCTAGCATCAAA 59.724 41.667 0.00 0.00 0.00 2.69
177 178 4.275936 ACACCACAAGTTCTAGCATCAAAC 59.724 41.667 0.00 0.00 0.00 2.93
178 179 4.516698 CACCACAAGTTCTAGCATCAAACT 59.483 41.667 0.00 0.00 34.81 2.66
179 180 4.516698 ACCACAAGTTCTAGCATCAAACTG 59.483 41.667 0.00 0.00 33.68 3.16
180 181 4.756642 CCACAAGTTCTAGCATCAAACTGA 59.243 41.667 0.00 0.00 33.68 3.41
181 182 5.413833 CCACAAGTTCTAGCATCAAACTGAT 59.586 40.000 0.00 0.00 37.65 2.90
182 183 6.402983 CCACAAGTTCTAGCATCAAACTGATC 60.403 42.308 0.00 0.00 34.28 2.92
183 184 5.349817 ACAAGTTCTAGCATCAAACTGATCG 59.650 40.000 0.00 0.00 34.28 3.69
184 185 5.330455 AGTTCTAGCATCAAACTGATCGA 57.670 39.130 0.00 0.00 34.28 3.59
185 186 5.911752 AGTTCTAGCATCAAACTGATCGAT 58.088 37.500 0.00 0.00 34.28 3.59
186 187 6.344500 AGTTCTAGCATCAAACTGATCGATT 58.656 36.000 0.00 0.00 34.28 3.34
187 188 7.492524 AGTTCTAGCATCAAACTGATCGATTA 58.507 34.615 0.00 0.00 34.28 1.75
188 189 7.436673 AGTTCTAGCATCAAACTGATCGATTAC 59.563 37.037 0.00 0.00 34.28 1.89
189 190 6.805713 TCTAGCATCAAACTGATCGATTACA 58.194 36.000 0.00 0.00 34.28 2.41
190 191 5.725110 AGCATCAAACTGATCGATTACAC 57.275 39.130 0.00 0.00 34.28 2.90
191 192 4.572389 AGCATCAAACTGATCGATTACACC 59.428 41.667 0.00 0.00 34.28 4.16
192 193 4.332543 GCATCAAACTGATCGATTACACCA 59.667 41.667 0.00 0.00 34.28 4.17
193 194 5.163764 GCATCAAACTGATCGATTACACCAA 60.164 40.000 0.00 0.00 34.28 3.67
194 195 6.481134 CATCAAACTGATCGATTACACCAAG 58.519 40.000 0.00 0.00 34.28 3.61
195 196 5.547465 TCAAACTGATCGATTACACCAAGT 58.453 37.500 0.00 0.00 0.00 3.16
196 197 5.995282 TCAAACTGATCGATTACACCAAGTT 59.005 36.000 0.00 0.00 0.00 2.66
197 198 6.147164 TCAAACTGATCGATTACACCAAGTTC 59.853 38.462 0.00 0.00 0.00 3.01
198 199 5.147330 ACTGATCGATTACACCAAGTTCA 57.853 39.130 0.00 0.00 0.00 3.18
199 200 5.547465 ACTGATCGATTACACCAAGTTCAA 58.453 37.500 0.00 0.00 0.00 2.69
200 201 5.639506 ACTGATCGATTACACCAAGTTCAAG 59.360 40.000 0.00 0.00 0.00 3.02
201 202 4.391830 TGATCGATTACACCAAGTTCAAGC 59.608 41.667 0.00 0.00 0.00 4.01
202 203 3.734463 TCGATTACACCAAGTTCAAGCA 58.266 40.909 0.00 0.00 0.00 3.91
203 204 4.323417 TCGATTACACCAAGTTCAAGCAT 58.677 39.130 0.00 0.00 0.00 3.79
204 205 4.391830 TCGATTACACCAAGTTCAAGCATC 59.608 41.667 0.00 0.00 0.00 3.91
205 206 4.154015 CGATTACACCAAGTTCAAGCATCA 59.846 41.667 0.00 0.00 0.00 3.07
206 207 4.829064 TTACACCAAGTTCAAGCATCAC 57.171 40.909 0.00 0.00 0.00 3.06
207 208 1.956477 ACACCAAGTTCAAGCATCACC 59.044 47.619 0.00 0.00 0.00 4.02
208 209 1.069022 CACCAAGTTCAAGCATCACCG 60.069 52.381 0.00 0.00 0.00 4.94
209 210 0.523072 CCAAGTTCAAGCATCACCGG 59.477 55.000 0.00 0.00 0.00 5.28
210 211 1.238439 CAAGTTCAAGCATCACCGGT 58.762 50.000 0.00 0.00 0.00 5.28
211 212 1.069022 CAAGTTCAAGCATCACCGGTG 60.069 52.381 29.26 29.26 0.00 4.94
212 213 1.210155 GTTCAAGCATCACCGGTGC 59.790 57.895 30.25 18.72 42.81 5.01
213 214 2.324330 TTCAAGCATCACCGGTGCG 61.324 57.895 30.25 22.78 46.86 5.34
214 215 2.723586 TTCAAGCATCACCGGTGCGA 62.724 55.000 30.25 14.58 46.86 5.10
215 216 2.108514 CAAGCATCACCGGTGCGAT 61.109 57.895 30.25 18.75 46.86 4.58
216 217 1.377202 AAGCATCACCGGTGCGATT 60.377 52.632 30.25 23.32 46.86 3.34
217 218 1.647545 AAGCATCACCGGTGCGATTG 61.648 55.000 30.25 22.34 46.86 2.67
218 219 2.106074 GCATCACCGGTGCGATTGA 61.106 57.895 30.25 12.09 32.29 2.57
219 220 1.715585 CATCACCGGTGCGATTGAC 59.284 57.895 30.25 0.00 0.00 3.18
220 221 0.740868 CATCACCGGTGCGATTGACT 60.741 55.000 30.25 3.54 0.00 3.41
221 222 0.460284 ATCACCGGTGCGATTGACTC 60.460 55.000 30.25 0.00 0.00 3.36
222 223 1.374125 CACCGGTGCGATTGACTCA 60.374 57.895 24.02 0.00 0.00 3.41
223 224 0.948623 CACCGGTGCGATTGACTCAA 60.949 55.000 24.02 0.00 0.00 3.02
224 225 0.670546 ACCGGTGCGATTGACTCAAG 60.671 55.000 6.12 0.00 0.00 3.02
225 226 0.389817 CCGGTGCGATTGACTCAAGA 60.390 55.000 0.00 0.00 0.00 3.02
226 227 1.645034 CGGTGCGATTGACTCAAGAT 58.355 50.000 0.00 0.00 0.00 2.40
227 228 2.481276 CCGGTGCGATTGACTCAAGATA 60.481 50.000 0.00 0.00 0.00 1.98
228 229 2.791560 CGGTGCGATTGACTCAAGATAG 59.208 50.000 0.00 0.00 0.00 2.08
229 230 3.489229 CGGTGCGATTGACTCAAGATAGA 60.489 47.826 0.00 0.00 0.00 1.98
230 231 4.433615 GGTGCGATTGACTCAAGATAGAA 58.566 43.478 0.00 0.00 0.00 2.10
231 232 4.505922 GGTGCGATTGACTCAAGATAGAAG 59.494 45.833 0.00 0.00 0.00 2.85
232 233 4.026145 GTGCGATTGACTCAAGATAGAAGC 60.026 45.833 0.00 0.00 0.00 3.86
233 234 4.115516 GCGATTGACTCAAGATAGAAGCA 58.884 43.478 0.00 0.00 0.00 3.91
234 235 4.026145 GCGATTGACTCAAGATAGAAGCAC 60.026 45.833 0.00 0.00 0.00 4.40
235 236 4.505922 CGATTGACTCAAGATAGAAGCACC 59.494 45.833 0.00 0.00 0.00 5.01
236 237 3.510388 TGACTCAAGATAGAAGCACCG 57.490 47.619 0.00 0.00 0.00 4.94
237 238 2.197577 GACTCAAGATAGAAGCACCGC 58.802 52.381 0.00 0.00 0.00 5.68
238 239 1.134670 ACTCAAGATAGAAGCACCGCC 60.135 52.381 0.00 0.00 0.00 6.13
239 240 0.178068 TCAAGATAGAAGCACCGCCC 59.822 55.000 0.00 0.00 0.00 6.13
240 241 1.144057 AAGATAGAAGCACCGCCCG 59.856 57.895 0.00 0.00 0.00 6.13
241 242 2.280186 GATAGAAGCACCGCCCGG 60.280 66.667 4.96 4.96 42.03 5.73
242 243 4.547367 ATAGAAGCACCGCCCGGC 62.547 66.667 6.63 0.00 39.32 6.13
260 261 2.719376 CCATATGGCTTGGGGTTCG 58.281 57.895 9.29 0.00 0.00 3.95
261 262 0.823356 CCATATGGCTTGGGGTTCGG 60.823 60.000 9.29 0.00 0.00 4.30
262 263 0.106719 CATATGGCTTGGGGTTCGGT 60.107 55.000 0.00 0.00 0.00 4.69
263 264 0.106719 ATATGGCTTGGGGTTCGGTG 60.107 55.000 0.00 0.00 0.00 4.94
264 265 2.204865 TATGGCTTGGGGTTCGGTGG 62.205 60.000 0.00 0.00 0.00 4.61
267 268 3.576259 CTTGGGGTTCGGTGGGGT 61.576 66.667 0.00 0.00 0.00 4.95
268 269 3.860930 CTTGGGGTTCGGTGGGGTG 62.861 68.421 0.00 0.00 0.00 4.61
269 270 4.902258 TGGGGTTCGGTGGGGTGA 62.902 66.667 0.00 0.00 0.00 4.02
270 271 4.340246 GGGGTTCGGTGGGGTGAC 62.340 72.222 0.00 0.00 0.00 3.67
283 284 3.442996 GGTGACCATCTTCGACCTG 57.557 57.895 0.00 0.00 0.00 4.00
284 285 0.895530 GGTGACCATCTTCGACCTGA 59.104 55.000 0.00 0.00 0.00 3.86
285 286 1.275291 GGTGACCATCTTCGACCTGAA 59.725 52.381 0.00 0.00 34.74 3.02
286 287 2.338500 GTGACCATCTTCGACCTGAAC 58.662 52.381 0.00 0.00 31.87 3.18
287 288 1.067846 TGACCATCTTCGACCTGAACG 60.068 52.381 0.00 0.00 31.87 3.95
288 289 0.389948 ACCATCTTCGACCTGAACGC 60.390 55.000 0.00 0.00 31.87 4.84
289 290 1.084370 CCATCTTCGACCTGAACGCC 61.084 60.000 0.00 0.00 31.87 5.68
290 291 1.153823 ATCTTCGACCTGAACGCCG 60.154 57.895 0.00 0.00 31.87 6.46
291 292 3.479269 CTTCGACCTGAACGCCGC 61.479 66.667 0.00 0.00 31.87 6.53
292 293 4.287781 TTCGACCTGAACGCCGCA 62.288 61.111 0.00 0.00 0.00 5.69
293 294 3.793775 TTCGACCTGAACGCCGCAA 62.794 57.895 0.00 0.00 0.00 4.85
294 295 3.777925 CGACCTGAACGCCGCAAG 61.778 66.667 0.00 0.00 0.00 4.01
312 313 4.553668 GGCGTCCCCCACTTTATC 57.446 61.111 0.00 0.00 0.00 1.75
313 314 1.605453 GGCGTCCCCCACTTTATCA 59.395 57.895 0.00 0.00 0.00 2.15
314 315 0.746923 GGCGTCCCCCACTTTATCAC 60.747 60.000 0.00 0.00 0.00 3.06
315 316 0.035820 GCGTCCCCCACTTTATCACA 60.036 55.000 0.00 0.00 0.00 3.58
316 317 2.012051 GCGTCCCCCACTTTATCACAG 61.012 57.143 0.00 0.00 0.00 3.66
317 318 1.278127 CGTCCCCCACTTTATCACAGT 59.722 52.381 0.00 0.00 0.00 3.55
318 319 2.290071 CGTCCCCCACTTTATCACAGTT 60.290 50.000 0.00 0.00 0.00 3.16
319 320 3.763057 GTCCCCCACTTTATCACAGTTT 58.237 45.455 0.00 0.00 0.00 2.66
320 321 3.756963 GTCCCCCACTTTATCACAGTTTC 59.243 47.826 0.00 0.00 0.00 2.78
321 322 3.655777 TCCCCCACTTTATCACAGTTTCT 59.344 43.478 0.00 0.00 0.00 2.52
322 323 4.847512 TCCCCCACTTTATCACAGTTTCTA 59.152 41.667 0.00 0.00 0.00 2.10
323 324 5.045869 TCCCCCACTTTATCACAGTTTCTAG 60.046 44.000 0.00 0.00 0.00 2.43
324 325 5.186198 CCCCACTTTATCACAGTTTCTAGG 58.814 45.833 0.00 0.00 0.00 3.02
325 326 5.045869 CCCCACTTTATCACAGTTTCTAGGA 60.046 44.000 0.00 0.00 0.00 2.94
326 327 6.109359 CCCACTTTATCACAGTTTCTAGGAG 58.891 44.000 0.00 0.00 0.00 3.69
327 328 5.582665 CCACTTTATCACAGTTTCTAGGAGC 59.417 44.000 0.00 0.00 0.00 4.70
328 329 5.289675 CACTTTATCACAGTTTCTAGGAGCG 59.710 44.000 0.00 0.00 0.00 5.03
329 330 5.047235 ACTTTATCACAGTTTCTAGGAGCGT 60.047 40.000 0.00 0.00 0.00 5.07
330 331 6.152323 ACTTTATCACAGTTTCTAGGAGCGTA 59.848 38.462 0.00 0.00 0.00 4.42
331 332 6.519679 TTATCACAGTTTCTAGGAGCGTAA 57.480 37.500 0.00 0.00 0.00 3.18
332 333 4.859304 TCACAGTTTCTAGGAGCGTAAA 57.141 40.909 0.00 0.00 0.00 2.01
333 334 4.553323 TCACAGTTTCTAGGAGCGTAAAC 58.447 43.478 0.00 0.00 33.11 2.01
334 335 4.280174 TCACAGTTTCTAGGAGCGTAAACT 59.720 41.667 0.00 0.00 41.56 2.66
335 336 5.474532 TCACAGTTTCTAGGAGCGTAAACTA 59.525 40.000 5.06 0.00 39.50 2.24
336 337 5.572126 CACAGTTTCTAGGAGCGTAAACTAC 59.428 44.000 5.06 0.00 39.50 2.73
337 338 5.476254 ACAGTTTCTAGGAGCGTAAACTACT 59.524 40.000 5.06 0.00 39.50 2.57
338 339 5.800941 CAGTTTCTAGGAGCGTAAACTACTG 59.199 44.000 5.06 0.00 39.50 2.74
339 340 5.709164 AGTTTCTAGGAGCGTAAACTACTGA 59.291 40.000 3.80 0.00 39.67 3.41
340 341 6.208204 AGTTTCTAGGAGCGTAAACTACTGAA 59.792 38.462 3.80 0.00 39.67 3.02
341 342 6.579666 TTCTAGGAGCGTAAACTACTGAAA 57.420 37.500 0.00 0.00 31.55 2.69
342 343 6.192234 TCTAGGAGCGTAAACTACTGAAAG 57.808 41.667 0.00 0.00 42.29 2.62
343 344 5.942236 TCTAGGAGCGTAAACTACTGAAAGA 59.058 40.000 0.00 0.00 37.43 2.52
344 345 5.464030 AGGAGCGTAAACTACTGAAAGAA 57.536 39.130 0.00 0.00 37.43 2.52
345 346 5.850614 AGGAGCGTAAACTACTGAAAGAAA 58.149 37.500 0.00 0.00 37.43 2.52
346 347 5.695363 AGGAGCGTAAACTACTGAAAGAAAC 59.305 40.000 0.00 0.00 37.43 2.78
347 348 5.464389 GGAGCGTAAACTACTGAAAGAAACA 59.536 40.000 0.00 0.00 37.43 2.83
348 349 6.346678 GGAGCGTAAACTACTGAAAGAAACAG 60.347 42.308 0.00 0.00 40.68 3.16
350 351 7.205297 AGCGTAAACTACTGAAAGAAACAGTA 58.795 34.615 0.00 0.00 45.10 2.74
351 352 7.168804 AGCGTAAACTACTGAAAGAAACAGTAC 59.831 37.037 0.00 0.00 45.10 2.73
352 353 7.043192 GCGTAAACTACTGAAAGAAACAGTACA 60.043 37.037 0.00 0.00 45.10 2.90
353 354 8.477709 CGTAAACTACTGAAAGAAACAGTACAG 58.522 37.037 0.00 0.00 45.10 2.74
354 355 9.310716 GTAAACTACTGAAAGAAACAGTACAGT 57.689 33.333 0.00 0.00 45.10 3.55
355 356 8.788325 AAACTACTGAAAGAAACAGTACAGTT 57.212 30.769 0.00 0.00 45.10 3.16
356 357 8.421673 AACTACTGAAAGAAACAGTACAGTTC 57.578 34.615 3.93 0.00 45.10 3.01
357 358 7.553334 ACTACTGAAAGAAACAGTACAGTTCA 58.447 34.615 3.93 0.00 45.10 3.18
358 359 8.038944 ACTACTGAAAGAAACAGTACAGTTCAA 58.961 33.333 3.93 0.00 45.10 2.69
359 360 7.308782 ACTGAAAGAAACAGTACAGTTCAAG 57.691 36.000 3.93 0.15 45.10 3.02
360 361 7.103641 ACTGAAAGAAACAGTACAGTTCAAGA 58.896 34.615 3.93 0.00 45.10 3.02
361 362 7.606456 ACTGAAAGAAACAGTACAGTTCAAGAA 59.394 33.333 3.93 0.00 45.10 2.52
362 363 7.748847 TGAAAGAAACAGTACAGTTCAAGAAC 58.251 34.615 3.93 4.82 41.45 3.01
363 364 5.968387 AGAAACAGTACAGTTCAAGAACG 57.032 39.130 3.93 5.53 45.50 3.95
364 365 4.270325 AGAAACAGTACAGTTCAAGAACGC 59.730 41.667 3.93 0.88 45.50 4.84
365 366 3.173668 ACAGTACAGTTCAAGAACGCA 57.826 42.857 7.25 0.00 45.50 5.24
366 367 3.527533 ACAGTACAGTTCAAGAACGCAA 58.472 40.909 7.25 0.00 45.50 4.85
367 368 3.936453 ACAGTACAGTTCAAGAACGCAAA 59.064 39.130 7.25 0.00 45.50 3.68
368 369 4.034048 ACAGTACAGTTCAAGAACGCAAAG 59.966 41.667 7.25 1.35 45.50 2.77
369 370 3.560068 AGTACAGTTCAAGAACGCAAAGG 59.440 43.478 7.25 0.00 45.50 3.11
370 371 1.065551 ACAGTTCAAGAACGCAAAGGC 59.934 47.619 7.25 0.00 45.50 4.35
371 372 1.334869 CAGTTCAAGAACGCAAAGGCT 59.665 47.619 7.25 0.00 45.50 4.58
372 373 2.024414 AGTTCAAGAACGCAAAGGCTT 58.976 42.857 7.25 0.00 45.50 4.35
373 374 2.427095 AGTTCAAGAACGCAAAGGCTTT 59.573 40.909 6.68 6.68 45.50 3.51
374 375 3.119137 AGTTCAAGAACGCAAAGGCTTTT 60.119 39.130 10.36 0.00 45.50 2.27
375 376 4.097286 AGTTCAAGAACGCAAAGGCTTTTA 59.903 37.500 10.36 0.00 45.50 1.52
376 377 4.846779 TCAAGAACGCAAAGGCTTTTAT 57.153 36.364 10.36 0.00 38.10 1.40
377 378 4.794169 TCAAGAACGCAAAGGCTTTTATC 58.206 39.130 10.36 6.38 38.10 1.75
378 379 4.518970 TCAAGAACGCAAAGGCTTTTATCT 59.481 37.500 10.36 8.51 38.10 1.98
379 380 4.686839 AGAACGCAAAGGCTTTTATCTC 57.313 40.909 10.36 5.38 38.10 2.75
380 381 4.327680 AGAACGCAAAGGCTTTTATCTCT 58.672 39.130 10.36 7.56 38.10 3.10
381 382 4.393371 AGAACGCAAAGGCTTTTATCTCTC 59.607 41.667 10.36 2.96 38.10 3.20
382 383 3.944087 ACGCAAAGGCTTTTATCTCTCT 58.056 40.909 10.36 0.00 38.10 3.10
383 384 5.086104 ACGCAAAGGCTTTTATCTCTCTA 57.914 39.130 10.36 0.00 38.10 2.43
384 385 4.870991 ACGCAAAGGCTTTTATCTCTCTAC 59.129 41.667 10.36 0.00 38.10 2.59
385 386 4.870426 CGCAAAGGCTTTTATCTCTCTACA 59.130 41.667 10.36 0.00 38.10 2.74
386 387 5.525378 CGCAAAGGCTTTTATCTCTCTACAT 59.475 40.000 10.36 0.00 38.10 2.29
387 388 6.701841 CGCAAAGGCTTTTATCTCTCTACATA 59.298 38.462 10.36 0.00 38.10 2.29
388 389 7.095857 CGCAAAGGCTTTTATCTCTCTACATAG 60.096 40.741 10.36 0.00 38.10 2.23
389 390 7.172361 GCAAAGGCTTTTATCTCTCTACATAGG 59.828 40.741 10.36 0.00 36.96 2.57
390 391 8.424918 CAAAGGCTTTTATCTCTCTACATAGGA 58.575 37.037 10.36 0.00 0.00 2.94
391 392 7.533289 AGGCTTTTATCTCTCTACATAGGAC 57.467 40.000 0.00 0.00 0.00 3.85
392 393 7.069986 AGGCTTTTATCTCTCTACATAGGACA 58.930 38.462 0.00 0.00 0.00 4.02
393 394 7.014808 AGGCTTTTATCTCTCTACATAGGACAC 59.985 40.741 0.00 0.00 0.00 3.67
394 395 7.149307 GCTTTTATCTCTCTACATAGGACACC 58.851 42.308 0.00 0.00 0.00 4.16
395 396 7.201920 GCTTTTATCTCTCTACATAGGACACCA 60.202 40.741 0.00 0.00 0.00 4.17
396 397 8.783660 TTTTATCTCTCTACATAGGACACCAT 57.216 34.615 0.00 0.00 0.00 3.55
397 398 8.783660 TTTATCTCTCTACATAGGACACCATT 57.216 34.615 0.00 0.00 0.00 3.16
398 399 8.783660 TTATCTCTCTACATAGGACACCATTT 57.216 34.615 0.00 0.00 0.00 2.32
399 400 7.682787 ATCTCTCTACATAGGACACCATTTT 57.317 36.000 0.00 0.00 0.00 1.82
400 401 7.496346 TCTCTCTACATAGGACACCATTTTT 57.504 36.000 0.00 0.00 0.00 1.94
401 402 8.603898 TCTCTCTACATAGGACACCATTTTTA 57.396 34.615 0.00 0.00 0.00 1.52
402 403 9.213777 TCTCTCTACATAGGACACCATTTTTAT 57.786 33.333 0.00 0.00 0.00 1.40
405 406 9.712305 CTCTACATAGGACACCATTTTTATAGG 57.288 37.037 0.00 0.00 0.00 2.57
406 407 9.442062 TCTACATAGGACACCATTTTTATAGGA 57.558 33.333 0.00 0.00 0.00 2.94
409 410 9.762381 ACATAGGACACCATTTTTATAGGAAAA 57.238 29.630 0.00 0.00 33.46 2.29
461 463 0.457337 AACTACGGACGGACGCATTC 60.457 55.000 0.77 0.00 37.37 2.67
575 577 0.037734 AGCTTTGGTTTACCCCTCCG 59.962 55.000 0.00 0.00 34.29 4.63
608 611 0.867746 GTAAACCGACAACCCCGTTC 59.132 55.000 0.00 0.00 0.00 3.95
631 634 2.562738 CCTCCAAAACAGGGGTCAATTC 59.437 50.000 0.00 0.00 0.00 2.17
633 636 1.623311 CCAAAACAGGGGTCAATTCCC 59.377 52.381 0.00 0.00 46.31 3.97
653 657 1.853319 GGAACAACACGAGACGCAG 59.147 57.895 0.00 0.00 0.00 5.18
660 679 1.978542 ACACGAGACGCAGACATAAC 58.021 50.000 0.00 0.00 0.00 1.89
663 682 3.189910 ACACGAGACGCAGACATAACTTA 59.810 43.478 0.00 0.00 0.00 2.24
709 739 3.015327 AGGGTTACTGCTACTAGACGTG 58.985 50.000 0.00 0.00 0.00 4.49
734 788 1.203287 TGTCTGGATCTGAGCTTGACG 59.797 52.381 11.63 0.00 0.00 4.35
745 799 1.261619 GAGCTTGACGCAAATATCCCG 59.738 52.381 0.00 0.00 42.61 5.14
778 870 3.011760 GCCGAGCGTTGAAACCTCG 62.012 63.158 18.87 18.87 43.21 4.63
807 899 4.736126 AACAAACTTGGGAAACTCTTGG 57.264 40.909 0.00 0.00 0.00 3.61
812 904 1.615392 CTTGGGAAACTCTTGGCAAGG 59.385 52.381 25.92 18.45 0.00 3.61
972 1070 2.435059 GGAACTCGCAGCTCCCAC 60.435 66.667 0.00 0.00 0.00 4.61
979 1077 2.583520 GCAGCTCCCACCTCTGAG 59.416 66.667 0.00 0.00 0.00 3.35
987 1085 0.179936 CCCACCTCTGAGCAAGATCC 59.820 60.000 0.00 0.00 33.29 3.36
988 1086 1.202330 CCACCTCTGAGCAAGATCCT 58.798 55.000 0.00 0.00 33.29 3.24
1007 1121 2.763448 CCTTCGAGGAGAGGATGACTTT 59.237 50.000 0.00 0.00 37.67 2.66
1134 1248 1.374252 TTTTGCTCCGAGCGTCTCC 60.374 57.895 15.58 0.00 46.26 3.71
1137 1251 3.134792 GCTCCGAGCGTCTCCTCA 61.135 66.667 4.23 0.00 0.00 3.86
1138 1252 2.795297 CTCCGAGCGTCTCCTCAC 59.205 66.667 2.00 0.00 0.00 3.51
1234 1348 1.348036 AGAAGAAGAAGGTCAACCCCG 59.652 52.381 0.00 0.00 36.42 5.73
1329 1443 1.066645 TGCCAGTGTCATCAGTGCTAG 60.067 52.381 0.00 0.00 41.98 3.42
1346 1460 5.880887 AGTGCTAGTAATAAGCTTTGGGTTC 59.119 40.000 3.20 0.00 40.73 3.62
1349 1463 6.374333 TGCTAGTAATAAGCTTTGGGTTCTTG 59.626 38.462 3.20 0.00 40.73 3.02
1354 1468 0.752658 AGCTTTGGGTTCTTGGTTGC 59.247 50.000 0.00 0.00 0.00 4.17
1355 1469 0.752658 GCTTTGGGTTCTTGGTTGCT 59.247 50.000 0.00 0.00 0.00 3.91
1367 1490 3.776969 TCTTGGTTGCTAGGTGATCTGAT 59.223 43.478 0.00 0.00 0.00 2.90
1368 1491 4.225942 TCTTGGTTGCTAGGTGATCTGATT 59.774 41.667 0.00 0.00 0.00 2.57
1369 1492 4.142609 TGGTTGCTAGGTGATCTGATTC 57.857 45.455 0.00 0.00 0.00 2.52
1370 1493 3.118261 TGGTTGCTAGGTGATCTGATTCC 60.118 47.826 0.00 0.00 0.00 3.01
1371 1494 3.471680 GTTGCTAGGTGATCTGATTCCC 58.528 50.000 0.00 4.44 0.00 3.97
1372 1495 2.050144 TGCTAGGTGATCTGATTCCCC 58.950 52.381 0.00 2.38 0.00 4.81
1373 1496 2.334023 GCTAGGTGATCTGATTCCCCT 58.666 52.381 0.00 8.37 0.00 4.79
1374 1497 2.038295 GCTAGGTGATCTGATTCCCCTG 59.962 54.545 11.65 4.19 0.00 4.45
1375 1498 2.575921 AGGTGATCTGATTCCCCTGA 57.424 50.000 0.00 0.00 0.00 3.86
1386 1510 3.009473 TGATTCCCCTGAGGTTCTTTCTG 59.991 47.826 0.00 0.00 36.75 3.02
1414 1538 1.600663 GCATCCATCGACGAGTACCTG 60.601 57.143 3.01 0.00 0.00 4.00
1521 1649 4.642445 TCCTTCCAAAGTTTTCGTTTCC 57.358 40.909 0.00 0.00 0.00 3.13
1564 1695 2.831366 TAGCTCCGTGGCGATCGAC 61.831 63.158 21.57 18.80 37.29 4.20
1570 1705 2.411701 GTGGCGATCGACGGATGA 59.588 61.111 21.57 0.00 42.83 2.92
1620 1755 1.296392 CTGGTGCCGATCCAGTTCA 59.704 57.895 10.75 0.00 45.09 3.18
1771 1906 2.556622 CACCACCACCACCATCTTTAAC 59.443 50.000 0.00 0.00 0.00 2.01
1778 1913 5.070001 CCACCACCATCTTTAACTTTCTCA 58.930 41.667 0.00 0.00 0.00 3.27
1779 1914 5.048713 CCACCACCATCTTTAACTTTCTCAC 60.049 44.000 0.00 0.00 0.00 3.51
1780 1915 5.048713 CACCACCATCTTTAACTTTCTCACC 60.049 44.000 0.00 0.00 0.00 4.02
1781 1916 5.070001 CCACCATCTTTAACTTTCTCACCA 58.930 41.667 0.00 0.00 0.00 4.17
1798 1934 0.749049 CCATCATCGTCAGCCTGAGA 59.251 55.000 0.00 0.00 0.00 3.27
1816 1952 3.181452 TGAGATCATGGCGGAATCAATGA 60.181 43.478 0.00 0.00 0.00 2.57
2113 2264 1.303398 ACCGAGAAGCTCACCGAGA 60.303 57.895 0.00 0.00 0.00 4.04
2141 2292 4.058797 CCCCCAACACTGAACGAC 57.941 61.111 0.00 0.00 0.00 4.34
2159 2310 4.561105 ACGACAGACATTTTCCTTCTCTC 58.439 43.478 0.00 0.00 0.00 3.20
2160 2311 4.282195 ACGACAGACATTTTCCTTCTCTCT 59.718 41.667 0.00 0.00 0.00 3.10
2161 2312 5.221541 ACGACAGACATTTTCCTTCTCTCTT 60.222 40.000 0.00 0.00 0.00 2.85
2163 2314 6.203723 CGACAGACATTTTCCTTCTCTCTTTT 59.796 38.462 0.00 0.00 0.00 2.27
2281 2444 1.002250 ATTCGTCAGTGCGTCGACAC 61.002 55.000 17.16 6.48 41.02 3.67
2389 2555 5.465056 GCTAATCTCAGGATAACTTCTGTGC 59.535 44.000 0.00 0.00 33.13 4.57
2397 2567 4.532521 AGGATAACTTCTGTGCCTACTGTT 59.467 41.667 0.00 0.00 0.00 3.16
2467 2664 3.286353 TGACAAGCCAACTTCACATCAA 58.714 40.909 0.00 0.00 32.29 2.57
2502 2699 6.710278 TGAACCATTAATCTCAGTCATCACA 58.290 36.000 0.00 0.00 0.00 3.58
2504 2701 8.485392 TGAACCATTAATCTCAGTCATCACATA 58.515 33.333 0.00 0.00 0.00 2.29
2505 2702 8.899427 AACCATTAATCTCAGTCATCACATAG 57.101 34.615 0.00 0.00 0.00 2.23
2507 2704 9.147732 ACCATTAATCTCAGTCATCACATAGTA 57.852 33.333 0.00 0.00 0.00 1.82
2508 2705 9.636879 CCATTAATCTCAGTCATCACATAGTAG 57.363 37.037 0.00 0.00 0.00 2.57
2509 2706 9.636879 CATTAATCTCAGTCATCACATAGTAGG 57.363 37.037 0.00 0.00 0.00 3.18
2510 2707 6.662865 AATCTCAGTCATCACATAGTAGGG 57.337 41.667 0.00 0.00 0.00 3.53
2511 2708 5.130705 TCTCAGTCATCACATAGTAGGGT 57.869 43.478 0.00 0.00 0.00 4.34
2512 2709 5.519808 TCTCAGTCATCACATAGTAGGGTT 58.480 41.667 0.00 0.00 0.00 4.11
2513 2710 5.958380 TCTCAGTCATCACATAGTAGGGTTT 59.042 40.000 0.00 0.00 0.00 3.27
2514 2711 6.440647 TCTCAGTCATCACATAGTAGGGTTTT 59.559 38.462 0.00 0.00 0.00 2.43
2515 2712 7.016153 TCAGTCATCACATAGTAGGGTTTTT 57.984 36.000 0.00 0.00 0.00 1.94
2531 2728 2.748461 TTTTTCTTTGACGTCGCCAG 57.252 45.000 11.62 6.59 0.00 4.85
2532 2729 0.941542 TTTTCTTTGACGTCGCCAGG 59.058 50.000 11.62 0.00 0.00 4.45
2533 2730 0.105224 TTTCTTTGACGTCGCCAGGA 59.895 50.000 11.62 0.45 0.00 3.86
2534 2731 0.105224 TTCTTTGACGTCGCCAGGAA 59.895 50.000 11.62 6.85 0.00 3.36
2535 2732 0.105224 TCTTTGACGTCGCCAGGAAA 59.895 50.000 11.62 3.77 0.00 3.13
2536 2733 0.512952 CTTTGACGTCGCCAGGAAAG 59.487 55.000 11.62 9.93 0.00 2.62
2561 2758 4.329801 CGCAGCATCAGTAAATTGTACTCA 59.670 41.667 0.00 0.00 0.00 3.41
2563 2760 5.725042 GCAGCATCAGTAAATTGTACTCACG 60.725 44.000 0.00 0.00 0.00 4.35
2564 2761 5.348724 CAGCATCAGTAAATTGTACTCACGT 59.651 40.000 0.00 0.00 0.00 4.49
2565 2762 5.577164 AGCATCAGTAAATTGTACTCACGTC 59.423 40.000 0.00 0.00 0.00 4.34
2566 2763 5.498700 GCATCAGTAAATTGTACTCACGTCG 60.499 44.000 0.00 0.00 0.00 5.12
2567 2764 3.916172 TCAGTAAATTGTACTCACGTCGC 59.084 43.478 0.00 0.00 0.00 5.19
2568 2765 3.671459 CAGTAAATTGTACTCACGTCGCA 59.329 43.478 0.00 0.00 0.00 5.10
2569 2766 3.918591 AGTAAATTGTACTCACGTCGCAG 59.081 43.478 0.00 0.00 0.00 5.18
2581 2828 2.279469 GTCGCAGCATCAGTACGAC 58.721 57.895 0.00 0.00 45.10 4.34
2597 2844 5.695363 CAGTACGACGATAGGACTGAGAATA 59.305 44.000 13.75 0.00 38.27 1.75
2598 2845 6.369340 CAGTACGACGATAGGACTGAGAATAT 59.631 42.308 13.75 0.00 38.27 1.28
2599 2846 7.544915 CAGTACGACGATAGGACTGAGAATATA 59.455 40.741 13.75 0.00 38.27 0.86
2600 2847 6.724694 ACGACGATAGGACTGAGAATATAC 57.275 41.667 0.00 0.00 43.77 1.47
2861 3110 7.627088 GCTTCAACAGCTAGAAGAATGCAATTA 60.627 37.037 20.61 0.00 46.27 1.40
2879 3128 7.266400 TGCAATTAACATATCTACACCGTGTA 58.734 34.615 10.92 10.92 0.00 2.90
2881 3130 8.221100 GCAATTAACATATCTACACCGTGTATG 58.779 37.037 11.78 10.55 31.66 2.39
2982 3231 3.419759 CCACGCCGGAAAAGGACG 61.420 66.667 5.05 0.00 36.56 4.79
3031 3280 5.419760 GTTGAAAACCTACAGACAAGGAC 57.580 43.478 0.00 0.00 42.21 3.85
3032 3281 4.764050 TGAAAACCTACAGACAAGGACA 57.236 40.909 0.00 0.00 37.57 4.02
3109 3359 6.013725 TGTTTCCTTACTGATGAAGCCTCTAA 60.014 38.462 0.00 0.00 0.00 2.10
3122 3372 2.843113 AGCCTCTAACTCTGCAATTCCT 59.157 45.455 0.00 0.00 0.00 3.36
3125 3375 4.836825 CCTCTAACTCTGCAATTCCTTCA 58.163 43.478 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.024768 CGTGTGACCTGTTTTTCTTTAAAGAA 58.975 34.615 23.65 23.65 42.91 2.52
4 5 6.548171 CGTGTGACCTGTTTTTCTTTAAAGA 58.452 36.000 13.99 13.99 0.00 2.52
5 6 5.229260 GCGTGTGACCTGTTTTTCTTTAAAG 59.771 40.000 9.04 9.04 0.00 1.85
6 7 5.096849 GCGTGTGACCTGTTTTTCTTTAAA 58.903 37.500 0.00 0.00 0.00 1.52
7 8 4.396790 AGCGTGTGACCTGTTTTTCTTTAA 59.603 37.500 0.00 0.00 0.00 1.52
8 9 3.942748 AGCGTGTGACCTGTTTTTCTTTA 59.057 39.130 0.00 0.00 0.00 1.85
9 10 2.752903 AGCGTGTGACCTGTTTTTCTTT 59.247 40.909 0.00 0.00 0.00 2.52
10 11 2.365582 AGCGTGTGACCTGTTTTTCTT 58.634 42.857 0.00 0.00 0.00 2.52
11 12 2.038387 AGCGTGTGACCTGTTTTTCT 57.962 45.000 0.00 0.00 0.00 2.52
12 13 2.610374 TGTAGCGTGTGACCTGTTTTTC 59.390 45.455 0.00 0.00 0.00 2.29
13 14 2.634600 TGTAGCGTGTGACCTGTTTTT 58.365 42.857 0.00 0.00 0.00 1.94
14 15 2.319136 TGTAGCGTGTGACCTGTTTT 57.681 45.000 0.00 0.00 0.00 2.43
15 16 2.143122 CATGTAGCGTGTGACCTGTTT 58.857 47.619 0.00 0.00 0.00 2.83
16 17 1.070134 ACATGTAGCGTGTGACCTGTT 59.930 47.619 0.00 0.00 31.87 3.16
17 18 0.679505 ACATGTAGCGTGTGACCTGT 59.320 50.000 0.00 0.00 31.87 4.00
18 19 1.336795 TGACATGTAGCGTGTGACCTG 60.337 52.381 0.00 0.00 33.38 4.00
19 20 0.966179 TGACATGTAGCGTGTGACCT 59.034 50.000 0.00 0.00 33.38 3.85
20 21 1.068474 GTGACATGTAGCGTGTGACC 58.932 55.000 0.00 0.00 32.79 4.02
21 22 1.721389 CAGTGACATGTAGCGTGTGAC 59.279 52.381 0.00 3.50 37.66 3.67
22 23 1.611491 TCAGTGACATGTAGCGTGTGA 59.389 47.619 0.00 0.00 33.38 3.58
23 24 1.721389 GTCAGTGACATGTAGCGTGTG 59.279 52.381 18.54 0.00 33.38 3.82
24 25 1.339929 TGTCAGTGACATGTAGCGTGT 59.660 47.619 22.06 0.00 37.67 4.49
25 26 1.988467 CTGTCAGTGACATGTAGCGTG 59.012 52.381 25.65 8.34 41.94 5.34
26 27 1.670087 GCTGTCAGTGACATGTAGCGT 60.670 52.381 25.65 0.00 41.94 5.07
27 28 0.994995 GCTGTCAGTGACATGTAGCG 59.005 55.000 25.65 14.07 41.94 4.26
28 29 0.994995 CGCTGTCAGTGACATGTAGC 59.005 55.000 25.65 22.37 41.94 3.58
29 30 1.633561 CCGCTGTCAGTGACATGTAG 58.366 55.000 25.65 15.13 41.94 2.74
30 31 0.246360 CCCGCTGTCAGTGACATGTA 59.754 55.000 25.65 3.60 41.94 2.29
31 32 1.004560 CCCGCTGTCAGTGACATGT 60.005 57.895 25.65 0.00 41.94 3.21
32 33 2.393768 GCCCGCTGTCAGTGACATG 61.394 63.158 25.65 19.76 41.94 3.21
33 34 2.046892 GCCCGCTGTCAGTGACAT 60.047 61.111 25.65 0.00 41.94 3.06
34 35 4.314440 GGCCCGCTGTCAGTGACA 62.314 66.667 24.09 24.09 40.50 3.58
69 70 0.319813 AAAATCAACGCTGCCTTGGC 60.320 50.000 10.68 4.43 0.00 4.52
70 71 1.269726 ACAAAATCAACGCTGCCTTGG 60.270 47.619 10.68 0.00 0.00 3.61
71 72 2.138596 ACAAAATCAACGCTGCCTTG 57.861 45.000 5.20 5.20 0.00 3.61
72 73 3.119495 GGATACAAAATCAACGCTGCCTT 60.119 43.478 0.00 0.00 0.00 4.35
73 74 2.423538 GGATACAAAATCAACGCTGCCT 59.576 45.455 0.00 0.00 0.00 4.75
74 75 2.797491 GGATACAAAATCAACGCTGCC 58.203 47.619 0.00 0.00 0.00 4.85
89 90 5.416947 ACAGTCCTAATCGTGTTTGGATAC 58.583 41.667 8.88 1.06 0.00 2.24
90 91 5.670792 ACAGTCCTAATCGTGTTTGGATA 57.329 39.130 8.88 0.00 0.00 2.59
91 92 4.553330 ACAGTCCTAATCGTGTTTGGAT 57.447 40.909 8.88 0.00 0.00 3.41
92 93 5.670792 ATACAGTCCTAATCGTGTTTGGA 57.329 39.130 3.39 3.39 0.00 3.53
93 94 6.542852 CAAATACAGTCCTAATCGTGTTTGG 58.457 40.000 0.00 0.00 37.04 3.28
94 95 6.021596 GCAAATACAGTCCTAATCGTGTTTG 58.978 40.000 0.00 0.00 40.96 2.93
95 96 5.703592 TGCAAATACAGTCCTAATCGTGTTT 59.296 36.000 0.00 0.00 0.00 2.83
96 97 5.121768 GTGCAAATACAGTCCTAATCGTGTT 59.878 40.000 0.00 0.00 0.00 3.32
97 98 4.630069 GTGCAAATACAGTCCTAATCGTGT 59.370 41.667 0.00 0.00 0.00 4.49
98 99 4.629634 TGTGCAAATACAGTCCTAATCGTG 59.370 41.667 0.00 0.00 0.00 4.35
99 100 4.827692 TGTGCAAATACAGTCCTAATCGT 58.172 39.130 0.00 0.00 0.00 3.73
100 101 5.727791 GCTTGTGCAAATACAGTCCTAATCG 60.728 44.000 0.00 0.00 39.41 3.34
101 102 5.449177 GGCTTGTGCAAATACAGTCCTAATC 60.449 44.000 0.00 0.00 41.91 1.75
102 103 4.399303 GGCTTGTGCAAATACAGTCCTAAT 59.601 41.667 0.00 0.00 41.91 1.73
103 104 3.756434 GGCTTGTGCAAATACAGTCCTAA 59.244 43.478 0.00 0.00 41.91 2.69
104 105 3.343617 GGCTTGTGCAAATACAGTCCTA 58.656 45.455 0.00 0.00 41.91 2.94
105 106 2.162681 GGCTTGTGCAAATACAGTCCT 58.837 47.619 0.00 0.00 41.91 3.85
106 107 1.135689 CGGCTTGTGCAAATACAGTCC 60.136 52.381 0.00 0.00 41.91 3.85
107 108 1.804151 TCGGCTTGTGCAAATACAGTC 59.196 47.619 0.00 0.00 41.91 3.51
108 109 1.890876 TCGGCTTGTGCAAATACAGT 58.109 45.000 0.00 0.00 41.91 3.55
109 110 2.223340 GGATCGGCTTGTGCAAATACAG 60.223 50.000 0.00 0.00 41.91 2.74
110 111 1.742831 GGATCGGCTTGTGCAAATACA 59.257 47.619 0.00 0.00 41.91 2.29
111 112 1.742831 TGGATCGGCTTGTGCAAATAC 59.257 47.619 0.00 0.00 41.91 1.89
112 113 2.121291 TGGATCGGCTTGTGCAAATA 57.879 45.000 0.00 0.00 41.91 1.40
113 114 1.203052 CTTGGATCGGCTTGTGCAAAT 59.797 47.619 0.00 0.00 41.91 2.32
114 115 0.597568 CTTGGATCGGCTTGTGCAAA 59.402 50.000 0.00 0.00 41.91 3.68
115 116 0.537143 ACTTGGATCGGCTTGTGCAA 60.537 50.000 0.00 0.00 41.91 4.08
116 117 0.537143 AACTTGGATCGGCTTGTGCA 60.537 50.000 0.00 0.00 41.91 4.57
117 118 1.448985 TAACTTGGATCGGCTTGTGC 58.551 50.000 0.00 0.00 38.76 4.57
118 119 3.731867 GCAATAACTTGGATCGGCTTGTG 60.732 47.826 0.00 0.00 32.72 3.33
119 120 2.423538 GCAATAACTTGGATCGGCTTGT 59.576 45.455 0.00 0.00 32.72 3.16
120 121 2.423185 TGCAATAACTTGGATCGGCTTG 59.577 45.455 0.00 0.00 32.72 4.01
121 122 2.423538 GTGCAATAACTTGGATCGGCTT 59.576 45.455 0.00 0.00 35.02 4.35
122 123 2.017049 GTGCAATAACTTGGATCGGCT 58.983 47.619 0.00 0.00 35.02 5.52
123 124 1.065551 GGTGCAATAACTTGGATCGGC 59.934 52.381 0.00 0.00 35.02 5.54
124 125 2.355756 CTGGTGCAATAACTTGGATCGG 59.644 50.000 0.00 0.00 36.67 4.18
125 126 3.009723 ACTGGTGCAATAACTTGGATCG 58.990 45.455 0.00 0.00 36.67 3.69
126 127 4.458989 TGAACTGGTGCAATAACTTGGATC 59.541 41.667 0.00 0.00 35.02 3.36
127 128 4.406456 TGAACTGGTGCAATAACTTGGAT 58.594 39.130 0.00 0.00 35.02 3.41
128 129 3.826524 TGAACTGGTGCAATAACTTGGA 58.173 40.909 0.00 0.00 32.72 3.53
129 130 4.582701 TTGAACTGGTGCAATAACTTGG 57.417 40.909 0.00 0.00 32.72 3.61
130 131 4.386652 GCATTGAACTGGTGCAATAACTTG 59.613 41.667 6.62 0.00 38.68 3.16
131 132 4.039004 TGCATTGAACTGGTGCAATAACTT 59.961 37.500 6.62 0.00 44.99 2.66
132 133 3.573538 TGCATTGAACTGGTGCAATAACT 59.426 39.130 6.62 0.00 44.99 2.24
133 134 3.911868 TGCATTGAACTGGTGCAATAAC 58.088 40.909 6.62 3.88 44.99 1.89
138 139 0.385029 GTGTGCATTGAACTGGTGCA 59.615 50.000 0.00 0.00 45.69 4.57
139 140 0.318955 GGTGTGCATTGAACTGGTGC 60.319 55.000 0.00 0.00 39.26 5.01
140 141 1.031235 TGGTGTGCATTGAACTGGTG 58.969 50.000 0.00 0.00 0.00 4.17
141 142 1.032014 GTGGTGTGCATTGAACTGGT 58.968 50.000 0.00 0.00 0.00 4.00
142 143 1.031235 TGTGGTGTGCATTGAACTGG 58.969 50.000 0.00 0.00 0.00 4.00
143 144 2.099592 ACTTGTGGTGTGCATTGAACTG 59.900 45.455 0.00 0.00 0.00 3.16
144 145 2.378038 ACTTGTGGTGTGCATTGAACT 58.622 42.857 0.00 0.00 0.00 3.01
145 146 2.869233 ACTTGTGGTGTGCATTGAAC 57.131 45.000 0.00 0.00 0.00 3.18
146 147 3.023119 AGAACTTGTGGTGTGCATTGAA 58.977 40.909 0.00 0.00 0.00 2.69
147 148 2.653726 AGAACTTGTGGTGTGCATTGA 58.346 42.857 0.00 0.00 0.00 2.57
148 149 3.610114 GCTAGAACTTGTGGTGTGCATTG 60.610 47.826 0.00 0.00 0.00 2.82
149 150 2.554032 GCTAGAACTTGTGGTGTGCATT 59.446 45.455 0.00 0.00 0.00 3.56
150 151 2.154462 GCTAGAACTTGTGGTGTGCAT 58.846 47.619 0.00 0.00 0.00 3.96
151 152 1.134250 TGCTAGAACTTGTGGTGTGCA 60.134 47.619 0.00 0.00 0.00 4.57
152 153 1.593196 TGCTAGAACTTGTGGTGTGC 58.407 50.000 0.00 0.00 0.00 4.57
153 154 3.402110 TGATGCTAGAACTTGTGGTGTG 58.598 45.455 0.00 0.00 0.00 3.82
154 155 3.769739 TGATGCTAGAACTTGTGGTGT 57.230 42.857 0.00 0.00 0.00 4.16
155 156 4.516698 AGTTTGATGCTAGAACTTGTGGTG 59.483 41.667 0.00 0.00 29.81 4.17
156 157 4.516698 CAGTTTGATGCTAGAACTTGTGGT 59.483 41.667 0.00 0.00 31.63 4.16
157 158 4.756642 TCAGTTTGATGCTAGAACTTGTGG 59.243 41.667 0.00 0.00 31.63 4.17
158 159 5.929697 TCAGTTTGATGCTAGAACTTGTG 57.070 39.130 0.00 0.00 31.63 3.33
159 160 5.349817 CGATCAGTTTGATGCTAGAACTTGT 59.650 40.000 0.00 0.00 37.20 3.16
160 161 5.578336 TCGATCAGTTTGATGCTAGAACTTG 59.422 40.000 0.00 0.00 37.20 3.16
161 162 5.724328 TCGATCAGTTTGATGCTAGAACTT 58.276 37.500 0.00 0.00 37.20 2.66
162 163 5.330455 TCGATCAGTTTGATGCTAGAACT 57.670 39.130 0.00 0.00 37.20 3.01
163 164 6.595772 AATCGATCAGTTTGATGCTAGAAC 57.404 37.500 0.00 0.00 37.20 3.01
164 165 7.222805 GTGTAATCGATCAGTTTGATGCTAGAA 59.777 37.037 0.00 0.00 37.20 2.10
165 166 6.697455 GTGTAATCGATCAGTTTGATGCTAGA 59.303 38.462 0.00 0.00 37.20 2.43
166 167 6.074088 GGTGTAATCGATCAGTTTGATGCTAG 60.074 42.308 0.00 0.00 37.20 3.42
167 168 5.753438 GGTGTAATCGATCAGTTTGATGCTA 59.247 40.000 0.00 0.00 37.20 3.49
168 169 4.572389 GGTGTAATCGATCAGTTTGATGCT 59.428 41.667 0.00 0.00 37.20 3.79
169 170 4.332543 TGGTGTAATCGATCAGTTTGATGC 59.667 41.667 0.00 0.00 37.20 3.91
170 171 6.092670 ACTTGGTGTAATCGATCAGTTTGATG 59.907 38.462 0.00 0.00 37.20 3.07
171 172 6.173339 ACTTGGTGTAATCGATCAGTTTGAT 58.827 36.000 0.00 0.00 40.34 2.57
172 173 5.547465 ACTTGGTGTAATCGATCAGTTTGA 58.453 37.500 0.00 0.00 0.00 2.69
173 174 5.862924 ACTTGGTGTAATCGATCAGTTTG 57.137 39.130 0.00 0.00 0.00 2.93
174 175 5.995282 TGAACTTGGTGTAATCGATCAGTTT 59.005 36.000 0.00 0.00 0.00 2.66
175 176 5.547465 TGAACTTGGTGTAATCGATCAGTT 58.453 37.500 0.00 0.00 0.00 3.16
176 177 5.147330 TGAACTTGGTGTAATCGATCAGT 57.853 39.130 0.00 0.00 0.00 3.41
177 178 5.446473 GCTTGAACTTGGTGTAATCGATCAG 60.446 44.000 0.00 0.00 0.00 2.90
178 179 4.391830 GCTTGAACTTGGTGTAATCGATCA 59.608 41.667 0.00 0.00 0.00 2.92
179 180 4.391830 TGCTTGAACTTGGTGTAATCGATC 59.608 41.667 0.00 0.00 0.00 3.69
180 181 4.323417 TGCTTGAACTTGGTGTAATCGAT 58.677 39.130 0.00 0.00 0.00 3.59
181 182 3.734463 TGCTTGAACTTGGTGTAATCGA 58.266 40.909 0.00 0.00 0.00 3.59
182 183 4.154015 TGATGCTTGAACTTGGTGTAATCG 59.846 41.667 0.00 0.00 0.00 3.34
183 184 5.393962 GTGATGCTTGAACTTGGTGTAATC 58.606 41.667 0.00 0.00 0.00 1.75
184 185 4.218417 GGTGATGCTTGAACTTGGTGTAAT 59.782 41.667 0.00 0.00 0.00 1.89
185 186 3.568007 GGTGATGCTTGAACTTGGTGTAA 59.432 43.478 0.00 0.00 0.00 2.41
186 187 3.146066 GGTGATGCTTGAACTTGGTGTA 58.854 45.455 0.00 0.00 0.00 2.90
187 188 1.956477 GGTGATGCTTGAACTTGGTGT 59.044 47.619 0.00 0.00 0.00 4.16
188 189 1.069022 CGGTGATGCTTGAACTTGGTG 60.069 52.381 0.00 0.00 0.00 4.17
189 190 1.238439 CGGTGATGCTTGAACTTGGT 58.762 50.000 0.00 0.00 0.00 3.67
190 191 0.523072 CCGGTGATGCTTGAACTTGG 59.477 55.000 0.00 0.00 0.00 3.61
191 192 1.069022 CACCGGTGATGCTTGAACTTG 60.069 52.381 31.31 0.00 0.00 3.16
192 193 1.238439 CACCGGTGATGCTTGAACTT 58.762 50.000 31.31 0.00 0.00 2.66
193 194 1.237285 GCACCGGTGATGCTTGAACT 61.237 55.000 38.30 0.00 40.08 3.01
194 195 1.210155 GCACCGGTGATGCTTGAAC 59.790 57.895 38.30 13.05 40.08 3.18
195 196 2.324330 CGCACCGGTGATGCTTGAA 61.324 57.895 38.30 0.00 41.10 2.69
196 197 2.520465 ATCGCACCGGTGATGCTTGA 62.520 55.000 38.30 22.35 42.48 3.02
197 198 1.647545 AATCGCACCGGTGATGCTTG 61.648 55.000 38.30 18.11 43.25 4.01
198 199 1.377202 AATCGCACCGGTGATGCTT 60.377 52.632 38.30 22.32 43.25 3.91
199 200 2.108514 CAATCGCACCGGTGATGCT 61.109 57.895 38.30 17.71 43.25 3.79
200 201 2.106074 TCAATCGCACCGGTGATGC 61.106 57.895 38.30 21.91 43.25 3.91
201 202 0.740868 AGTCAATCGCACCGGTGATG 60.741 55.000 38.30 27.34 43.25 3.07
202 203 0.460284 GAGTCAATCGCACCGGTGAT 60.460 55.000 38.30 20.69 45.90 3.06
203 204 1.080093 GAGTCAATCGCACCGGTGA 60.080 57.895 38.30 19.17 38.05 4.02
204 205 0.948623 TTGAGTCAATCGCACCGGTG 60.949 55.000 30.66 30.66 0.00 4.94
205 206 0.670546 CTTGAGTCAATCGCACCGGT 60.671 55.000 0.00 0.00 0.00 5.28
206 207 0.389817 TCTTGAGTCAATCGCACCGG 60.390 55.000 5.91 0.00 0.00 5.28
207 208 1.645034 ATCTTGAGTCAATCGCACCG 58.355 50.000 5.91 0.00 0.00 4.94
208 209 4.046938 TCTATCTTGAGTCAATCGCACC 57.953 45.455 5.91 0.00 0.00 5.01
209 210 4.026145 GCTTCTATCTTGAGTCAATCGCAC 60.026 45.833 5.91 0.00 0.00 5.34
210 211 4.115516 GCTTCTATCTTGAGTCAATCGCA 58.884 43.478 5.91 0.00 0.00 5.10
211 212 4.026145 GTGCTTCTATCTTGAGTCAATCGC 60.026 45.833 5.91 2.76 0.00 4.58
212 213 4.505922 GGTGCTTCTATCTTGAGTCAATCG 59.494 45.833 5.91 0.00 0.00 3.34
213 214 4.505922 CGGTGCTTCTATCTTGAGTCAATC 59.494 45.833 5.91 0.00 0.00 2.67
214 215 4.437239 CGGTGCTTCTATCTTGAGTCAAT 58.563 43.478 5.91 0.00 0.00 2.57
215 216 3.849911 CGGTGCTTCTATCTTGAGTCAA 58.150 45.455 5.25 5.25 0.00 3.18
216 217 2.417379 GCGGTGCTTCTATCTTGAGTCA 60.417 50.000 0.00 0.00 0.00 3.41
217 218 2.197577 GCGGTGCTTCTATCTTGAGTC 58.802 52.381 0.00 0.00 0.00 3.36
218 219 1.134670 GGCGGTGCTTCTATCTTGAGT 60.135 52.381 0.00 0.00 0.00 3.41
219 220 1.576356 GGCGGTGCTTCTATCTTGAG 58.424 55.000 0.00 0.00 0.00 3.02
220 221 0.178068 GGGCGGTGCTTCTATCTTGA 59.822 55.000 0.00 0.00 0.00 3.02
221 222 1.154205 CGGGCGGTGCTTCTATCTTG 61.154 60.000 0.00 0.00 0.00 3.02
222 223 1.144057 CGGGCGGTGCTTCTATCTT 59.856 57.895 0.00 0.00 0.00 2.40
223 224 2.797278 CCGGGCGGTGCTTCTATCT 61.797 63.158 0.00 0.00 0.00 1.98
224 225 2.280186 CCGGGCGGTGCTTCTATC 60.280 66.667 0.00 0.00 0.00 2.08
225 226 4.547367 GCCGGGCGGTGCTTCTAT 62.547 66.667 1.81 0.00 37.65 1.98
242 243 0.823356 CCGAACCCCAAGCCATATGG 60.823 60.000 18.07 18.07 37.71 2.74
243 244 0.106719 ACCGAACCCCAAGCCATATG 60.107 55.000 0.00 0.00 0.00 1.78
244 245 0.106719 CACCGAACCCCAAGCCATAT 60.107 55.000 0.00 0.00 0.00 1.78
245 246 1.301623 CACCGAACCCCAAGCCATA 59.698 57.895 0.00 0.00 0.00 2.74
246 247 2.035626 CACCGAACCCCAAGCCAT 59.964 61.111 0.00 0.00 0.00 4.40
247 248 4.278513 CCACCGAACCCCAAGCCA 62.279 66.667 0.00 0.00 0.00 4.75
250 251 3.576259 ACCCCACCGAACCCCAAG 61.576 66.667 0.00 0.00 0.00 3.61
251 252 3.892162 CACCCCACCGAACCCCAA 61.892 66.667 0.00 0.00 0.00 4.12
252 253 4.902258 TCACCCCACCGAACCCCA 62.902 66.667 0.00 0.00 0.00 4.96
253 254 4.340246 GTCACCCCACCGAACCCC 62.340 72.222 0.00 0.00 0.00 4.95
254 255 4.340246 GGTCACCCCACCGAACCC 62.340 72.222 0.00 0.00 0.00 4.11
255 256 3.562232 TGGTCACCCCACCGAACC 61.562 66.667 0.00 0.00 38.72 3.62
263 264 1.221021 GGTCGAAGATGGTCACCCC 59.779 63.158 0.00 0.00 40.67 4.95
264 265 0.108138 CAGGTCGAAGATGGTCACCC 60.108 60.000 0.00 0.00 40.67 4.61
265 266 0.895530 TCAGGTCGAAGATGGTCACC 59.104 55.000 0.00 0.00 40.67 4.02
266 267 2.338500 GTTCAGGTCGAAGATGGTCAC 58.662 52.381 0.00 0.00 40.67 3.67
267 268 1.067846 CGTTCAGGTCGAAGATGGTCA 60.068 52.381 0.00 0.00 40.67 4.02
268 269 1.630148 CGTTCAGGTCGAAGATGGTC 58.370 55.000 0.00 0.00 40.67 4.02
269 270 0.389948 GCGTTCAGGTCGAAGATGGT 60.390 55.000 0.00 0.00 40.67 3.55
270 271 1.084370 GGCGTTCAGGTCGAAGATGG 61.084 60.000 0.00 0.00 40.67 3.51
271 272 1.413767 CGGCGTTCAGGTCGAAGATG 61.414 60.000 0.00 0.00 40.67 2.90
272 273 1.153823 CGGCGTTCAGGTCGAAGAT 60.154 57.895 0.00 0.00 40.67 2.40
273 274 2.257371 CGGCGTTCAGGTCGAAGA 59.743 61.111 0.00 0.00 37.14 2.87
274 275 3.479269 GCGGCGTTCAGGTCGAAG 61.479 66.667 9.37 0.00 37.14 3.79
275 276 3.793775 TTGCGGCGTTCAGGTCGAA 62.794 57.895 9.37 0.00 37.14 3.71
276 277 4.287781 TTGCGGCGTTCAGGTCGA 62.288 61.111 9.37 0.00 37.14 4.20
277 278 3.777925 CTTGCGGCGTTCAGGTCG 61.778 66.667 9.37 0.00 38.24 4.79
278 279 3.423154 CCTTGCGGCGTTCAGGTC 61.423 66.667 9.37 0.00 0.00 3.85
291 292 2.132089 TAAAGTGGGGGACGCCCTTG 62.132 60.000 26.64 0.00 44.66 3.61
292 293 1.212250 ATAAAGTGGGGGACGCCCTT 61.212 55.000 26.64 15.88 44.66 3.95
293 294 1.618447 ATAAAGTGGGGGACGCCCT 60.618 57.895 26.64 10.43 44.66 5.19
294 295 1.153025 GATAAAGTGGGGGACGCCC 60.153 63.158 20.67 20.67 44.51 6.13
295 296 0.746923 GTGATAAAGTGGGGGACGCC 60.747 60.000 0.00 0.00 42.25 5.68
296 297 0.035820 TGTGATAAAGTGGGGGACGC 60.036 55.000 0.00 0.00 43.69 5.19
297 298 1.278127 ACTGTGATAAAGTGGGGGACG 59.722 52.381 0.00 0.00 0.00 4.79
298 299 3.434940 AACTGTGATAAAGTGGGGGAC 57.565 47.619 0.00 0.00 0.00 4.46
299 300 3.655777 AGAAACTGTGATAAAGTGGGGGA 59.344 43.478 0.00 0.00 0.00 4.81
300 301 4.034285 AGAAACTGTGATAAAGTGGGGG 57.966 45.455 0.00 0.00 0.00 5.40
301 302 5.045869 TCCTAGAAACTGTGATAAAGTGGGG 60.046 44.000 0.00 0.00 0.00 4.96
302 303 6.049955 TCCTAGAAACTGTGATAAAGTGGG 57.950 41.667 0.00 0.00 0.00 4.61
303 304 5.582665 GCTCCTAGAAACTGTGATAAAGTGG 59.417 44.000 0.00 0.00 0.00 4.00
304 305 5.289675 CGCTCCTAGAAACTGTGATAAAGTG 59.710 44.000 0.00 0.00 0.00 3.16
305 306 5.047235 ACGCTCCTAGAAACTGTGATAAAGT 60.047 40.000 0.00 0.00 0.00 2.66
306 307 5.411781 ACGCTCCTAGAAACTGTGATAAAG 58.588 41.667 0.00 0.00 0.00 1.85
307 308 5.401531 ACGCTCCTAGAAACTGTGATAAA 57.598 39.130 0.00 0.00 0.00 1.40
308 309 6.519679 TTACGCTCCTAGAAACTGTGATAA 57.480 37.500 0.00 0.00 0.00 1.75
309 310 6.152323 AGTTTACGCTCCTAGAAACTGTGATA 59.848 38.462 4.65 0.00 39.90 2.15
310 311 5.047235 AGTTTACGCTCCTAGAAACTGTGAT 60.047 40.000 4.65 0.00 39.90 3.06
311 312 4.280174 AGTTTACGCTCCTAGAAACTGTGA 59.720 41.667 4.65 0.00 39.90 3.58
312 313 4.557205 AGTTTACGCTCCTAGAAACTGTG 58.443 43.478 4.65 0.00 39.90 3.66
313 314 4.868314 AGTTTACGCTCCTAGAAACTGT 57.132 40.909 4.65 0.00 39.90 3.55
314 315 5.800941 CAGTAGTTTACGCTCCTAGAAACTG 59.199 44.000 12.76 0.00 41.13 3.16
315 316 5.709164 TCAGTAGTTTACGCTCCTAGAAACT 59.291 40.000 9.24 9.24 42.96 2.66
316 317 5.947443 TCAGTAGTTTACGCTCCTAGAAAC 58.053 41.667 0.00 0.00 33.01 2.78
317 318 6.579666 TTCAGTAGTTTACGCTCCTAGAAA 57.420 37.500 0.00 0.00 0.00 2.52
318 319 6.432162 TCTTTCAGTAGTTTACGCTCCTAGAA 59.568 38.462 0.00 0.00 0.00 2.10
319 320 5.942236 TCTTTCAGTAGTTTACGCTCCTAGA 59.058 40.000 0.00 0.00 0.00 2.43
320 321 6.192234 TCTTTCAGTAGTTTACGCTCCTAG 57.808 41.667 0.00 0.00 0.00 3.02
321 322 6.579666 TTCTTTCAGTAGTTTACGCTCCTA 57.420 37.500 0.00 0.00 0.00 2.94
322 323 5.464030 TTCTTTCAGTAGTTTACGCTCCT 57.536 39.130 0.00 0.00 0.00 3.69
323 324 5.464389 TGTTTCTTTCAGTAGTTTACGCTCC 59.536 40.000 0.00 0.00 0.00 4.70
324 325 6.200475 ACTGTTTCTTTCAGTAGTTTACGCTC 59.800 38.462 0.00 0.00 43.17 5.03
325 326 6.047231 ACTGTTTCTTTCAGTAGTTTACGCT 58.953 36.000 0.00 0.00 43.17 5.07
326 327 6.283161 ACTGTTTCTTTCAGTAGTTTACGC 57.717 37.500 0.00 0.00 43.17 4.42
327 328 8.343974 TGTACTGTTTCTTTCAGTAGTTTACG 57.656 34.615 6.11 0.00 45.18 3.18
328 329 9.310716 ACTGTACTGTTTCTTTCAGTAGTTTAC 57.689 33.333 0.00 0.00 45.18 2.01
329 330 9.880157 AACTGTACTGTTTCTTTCAGTAGTTTA 57.120 29.630 11.94 0.00 45.18 2.01
330 331 8.788325 AACTGTACTGTTTCTTTCAGTAGTTT 57.212 30.769 11.94 0.00 45.18 2.66
331 332 8.038944 TGAACTGTACTGTTTCTTTCAGTAGTT 58.961 33.333 17.86 11.47 45.18 2.24
332 333 7.553334 TGAACTGTACTGTTTCTTTCAGTAGT 58.447 34.615 17.86 1.92 45.18 2.73
333 334 8.420374 TTGAACTGTACTGTTTCTTTCAGTAG 57.580 34.615 17.86 1.38 45.18 2.57
334 335 8.255206 TCTTGAACTGTACTGTTTCTTTCAGTA 58.745 33.333 17.86 2.29 43.17 2.74
335 336 7.103641 TCTTGAACTGTACTGTTTCTTTCAGT 58.896 34.615 17.86 4.11 46.10 3.41
336 337 7.539712 TCTTGAACTGTACTGTTTCTTTCAG 57.460 36.000 17.86 8.98 38.68 3.02
337 338 7.412563 CGTTCTTGAACTGTACTGTTTCTTTCA 60.413 37.037 17.86 9.31 0.00 2.69
338 339 6.900299 CGTTCTTGAACTGTACTGTTTCTTTC 59.100 38.462 17.86 7.01 0.00 2.62
339 340 6.674760 GCGTTCTTGAACTGTACTGTTTCTTT 60.675 38.462 17.86 0.00 0.00 2.52
340 341 5.220605 GCGTTCTTGAACTGTACTGTTTCTT 60.221 40.000 17.86 0.00 0.00 2.52
341 342 4.270325 GCGTTCTTGAACTGTACTGTTTCT 59.730 41.667 17.86 0.00 0.00 2.52
342 343 4.033587 TGCGTTCTTGAACTGTACTGTTTC 59.966 41.667 17.86 11.97 0.00 2.78
343 344 3.936453 TGCGTTCTTGAACTGTACTGTTT 59.064 39.130 17.86 3.90 0.00 2.83
344 345 3.527533 TGCGTTCTTGAACTGTACTGTT 58.472 40.909 16.97 16.97 0.00 3.16
345 346 3.173668 TGCGTTCTTGAACTGTACTGT 57.826 42.857 11.11 0.00 0.00 3.55
346 347 4.518217 CTTTGCGTTCTTGAACTGTACTG 58.482 43.478 11.11 0.00 0.00 2.74
347 348 3.560068 CCTTTGCGTTCTTGAACTGTACT 59.440 43.478 11.11 0.00 0.00 2.73
348 349 3.848554 GCCTTTGCGTTCTTGAACTGTAC 60.849 47.826 11.11 0.00 0.00 2.90
349 350 2.289547 GCCTTTGCGTTCTTGAACTGTA 59.710 45.455 11.11 2.98 0.00 2.74
350 351 1.065551 GCCTTTGCGTTCTTGAACTGT 59.934 47.619 11.11 0.00 0.00 3.55
351 352 1.334869 AGCCTTTGCGTTCTTGAACTG 59.665 47.619 11.11 6.49 44.33 3.16
352 353 1.680338 AGCCTTTGCGTTCTTGAACT 58.320 45.000 11.11 0.00 44.33 3.01
353 354 2.492019 AAGCCTTTGCGTTCTTGAAC 57.508 45.000 3.60 3.60 44.33 3.18
354 355 3.518634 AAAAGCCTTTGCGTTCTTGAA 57.481 38.095 0.00 0.00 44.33 2.69
355 356 4.518970 AGATAAAAGCCTTTGCGTTCTTGA 59.481 37.500 0.00 0.00 44.33 3.02
356 357 4.798574 AGATAAAAGCCTTTGCGTTCTTG 58.201 39.130 0.00 0.00 44.33 3.02
357 358 4.762251 AGAGATAAAAGCCTTTGCGTTCTT 59.238 37.500 0.00 0.00 44.33 2.52
358 359 4.327680 AGAGATAAAAGCCTTTGCGTTCT 58.672 39.130 0.00 0.00 44.33 3.01
359 360 4.393371 AGAGAGATAAAAGCCTTTGCGTTC 59.607 41.667 0.00 0.00 44.33 3.95
360 361 4.327680 AGAGAGATAAAAGCCTTTGCGTT 58.672 39.130 0.00 0.00 44.33 4.84
361 362 3.944087 AGAGAGATAAAAGCCTTTGCGT 58.056 40.909 0.00 0.00 44.33 5.24
362 363 4.870426 TGTAGAGAGATAAAAGCCTTTGCG 59.130 41.667 0.00 0.00 44.33 4.85
363 364 6.934048 ATGTAGAGAGATAAAAGCCTTTGC 57.066 37.500 0.00 0.00 37.95 3.68
364 365 8.424918 TCCTATGTAGAGAGATAAAAGCCTTTG 58.575 37.037 0.00 0.00 0.00 2.77
365 366 8.425703 GTCCTATGTAGAGAGATAAAAGCCTTT 58.574 37.037 0.00 0.00 0.00 3.11
366 367 7.565398 TGTCCTATGTAGAGAGATAAAAGCCTT 59.435 37.037 0.00 0.00 0.00 4.35
367 368 7.014808 GTGTCCTATGTAGAGAGATAAAAGCCT 59.985 40.741 0.00 0.00 0.00 4.58
368 369 7.149307 GTGTCCTATGTAGAGAGATAAAAGCC 58.851 42.308 0.00 0.00 0.00 4.35
369 370 7.149307 GGTGTCCTATGTAGAGAGATAAAAGC 58.851 42.308 0.00 0.00 0.00 3.51
370 371 8.239038 TGGTGTCCTATGTAGAGAGATAAAAG 57.761 38.462 0.00 0.00 0.00 2.27
371 372 8.783660 ATGGTGTCCTATGTAGAGAGATAAAA 57.216 34.615 0.00 0.00 0.00 1.52
372 373 8.783660 AATGGTGTCCTATGTAGAGAGATAAA 57.216 34.615 0.00 0.00 0.00 1.40
373 374 8.783660 AAATGGTGTCCTATGTAGAGAGATAA 57.216 34.615 0.00 0.00 0.00 1.75
374 375 8.783660 AAAATGGTGTCCTATGTAGAGAGATA 57.216 34.615 0.00 0.00 0.00 1.98
375 376 7.682787 AAAATGGTGTCCTATGTAGAGAGAT 57.317 36.000 0.00 0.00 0.00 2.75
376 377 7.496346 AAAAATGGTGTCCTATGTAGAGAGA 57.504 36.000 0.00 0.00 0.00 3.10
379 380 9.712305 CCTATAAAAATGGTGTCCTATGTAGAG 57.288 37.037 0.00 0.00 0.00 2.43
380 381 9.442062 TCCTATAAAAATGGTGTCCTATGTAGA 57.558 33.333 0.00 0.00 0.00 2.59
383 384 9.762381 TTTTCCTATAAAAATGGTGTCCTATGT 57.238 29.630 0.00 0.00 0.00 2.29
408 409 9.942850 CTCCAAATTAAAATGGTGTCCTATTTT 57.057 29.630 9.10 0.00 39.21 1.82
409 410 8.040727 GCTCCAAATTAAAATGGTGTCCTATTT 58.959 33.333 9.10 0.00 37.94 1.40
410 411 7.180051 TGCTCCAAATTAAAATGGTGTCCTATT 59.820 33.333 9.10 0.00 37.94 1.73
411 412 6.667414 TGCTCCAAATTAAAATGGTGTCCTAT 59.333 34.615 9.10 0.00 37.94 2.57
412 413 6.013379 TGCTCCAAATTAAAATGGTGTCCTA 58.987 36.000 9.10 0.00 37.94 2.94
413 414 4.837860 TGCTCCAAATTAAAATGGTGTCCT 59.162 37.500 9.10 0.00 37.94 3.85
414 415 4.929211 GTGCTCCAAATTAAAATGGTGTCC 59.071 41.667 9.10 0.00 37.94 4.02
415 416 4.929211 GGTGCTCCAAATTAAAATGGTGTC 59.071 41.667 0.00 5.28 37.94 3.67
416 417 4.262851 GGGTGCTCCAAATTAAAATGGTGT 60.263 41.667 7.20 0.00 37.94 4.16
417 418 4.252878 GGGTGCTCCAAATTAAAATGGTG 58.747 43.478 7.20 8.16 37.94 4.17
418 419 3.056179 CGGGTGCTCCAAATTAAAATGGT 60.056 43.478 7.20 0.00 37.94 3.55
419 420 3.520569 CGGGTGCTCCAAATTAAAATGG 58.479 45.455 7.20 3.99 38.09 3.16
420 421 3.194542 TCCGGGTGCTCCAAATTAAAATG 59.805 43.478 0.00 0.00 34.36 2.32
421 422 3.436243 TCCGGGTGCTCCAAATTAAAAT 58.564 40.909 0.00 0.00 34.36 1.82
422 423 2.877866 TCCGGGTGCTCCAAATTAAAA 58.122 42.857 0.00 0.00 34.36 1.52
430 431 2.642254 CGTAGTTCCGGGTGCTCCA 61.642 63.158 0.00 0.00 34.36 3.86
491 493 4.699522 AAGGGAAGGGACACGCGC 62.700 66.667 5.73 0.00 0.00 6.86
492 494 1.599797 AAAAGGGAAGGGACACGCG 60.600 57.895 3.53 3.53 0.00 6.01
493 495 1.956802 CAAAAGGGAAGGGACACGC 59.043 57.895 0.00 0.00 0.00 5.34
494 496 1.852067 CGCAAAAGGGAAGGGACACG 61.852 60.000 0.00 0.00 0.00 4.49
495 497 0.822121 ACGCAAAAGGGAAGGGACAC 60.822 55.000 0.00 0.00 0.00 3.67
496 498 0.821711 CACGCAAAAGGGAAGGGACA 60.822 55.000 0.00 0.00 0.00 4.02
497 499 1.524008 CCACGCAAAAGGGAAGGGAC 61.524 60.000 0.00 0.00 0.00 4.46
498 500 1.228429 CCACGCAAAAGGGAAGGGA 60.228 57.895 0.00 0.00 0.00 4.20
499 501 1.524008 GACCACGCAAAAGGGAAGGG 61.524 60.000 0.00 0.00 0.00 3.95
500 502 1.852067 CGACCACGCAAAAGGGAAGG 61.852 60.000 0.00 0.00 0.00 3.46
501 503 1.164041 ACGACCACGCAAAAGGGAAG 61.164 55.000 0.00 0.00 43.96 3.46
502 504 1.153127 ACGACCACGCAAAAGGGAA 60.153 52.632 0.00 0.00 43.96 3.97
575 577 1.070376 GGTTTACACGTGAAACCGAGC 60.070 52.381 29.64 17.00 44.69 5.03
596 598 2.350134 GAGGGGAACGGGGTTGTC 59.650 66.667 0.00 0.00 0.00 3.18
631 634 1.666872 GTCTCGTGTTGTTCCGGGG 60.667 63.158 0.00 0.00 0.00 5.73
633 636 2.654912 GCGTCTCGTGTTGTTCCGG 61.655 63.158 0.00 0.00 0.00 5.14
653 657 6.540189 ACATGCAGAGGTTCATAAGTTATGTC 59.460 38.462 19.85 14.43 37.45 3.06
660 679 7.436933 TGTATCTACATGCAGAGGTTCATAAG 58.563 38.462 1.42 0.00 0.00 1.73
663 682 5.741383 GCTGTATCTACATGCAGAGGTTCAT 60.741 44.000 1.42 0.00 43.58 2.57
734 788 1.268539 CGCTTCAACCGGGATATTTGC 60.269 52.381 6.32 0.00 0.00 3.68
745 799 4.410743 GGCTGCTGCGCTTCAACC 62.411 66.667 9.73 7.56 40.82 3.77
766 858 1.213094 ACAGCGACGAGGTTTCAACG 61.213 55.000 0.00 0.00 0.00 4.10
778 870 2.215196 TCCCAAGTTTGTTACAGCGAC 58.785 47.619 0.00 0.00 0.00 5.19
807 899 1.581447 CGTTTCTTCCAGGCCTTGC 59.419 57.895 0.00 0.00 0.00 4.01
812 904 3.062466 GGCCCGTTTCTTCCAGGC 61.062 66.667 0.00 0.00 43.09 4.85
857 955 0.544833 TAAGGGCAACAGGGTCCGTA 60.545 55.000 0.00 0.00 37.71 4.02
972 1070 1.753649 TCGAAGGATCTTGCTCAGAGG 59.246 52.381 0.00 0.00 33.87 3.69
979 1077 1.068434 CCTCTCCTCGAAGGATCTTGC 59.932 57.143 4.39 0.00 44.81 4.01
980 1078 2.660572 TCCTCTCCTCGAAGGATCTTG 58.339 52.381 0.00 0.00 44.81 3.02
987 1085 3.779759 CAAAGTCATCCTCTCCTCGAAG 58.220 50.000 0.00 0.00 0.00 3.79
988 1086 2.093973 GCAAAGTCATCCTCTCCTCGAA 60.094 50.000 0.00 0.00 0.00 3.71
1234 1348 0.906066 GAGAAGGTGAAGAGGTCCCC 59.094 60.000 0.00 0.00 0.00 4.81
1329 1443 5.977489 ACCAAGAACCCAAAGCTTATTAC 57.023 39.130 0.00 0.00 0.00 1.89
1346 1460 3.616956 TCAGATCACCTAGCAACCAAG 57.383 47.619 0.00 0.00 0.00 3.61
1349 1463 3.471680 GGAATCAGATCACCTAGCAACC 58.528 50.000 0.00 0.00 0.00 3.77
1367 1490 2.106511 CACAGAAAGAACCTCAGGGGAA 59.893 50.000 0.00 0.00 38.76 3.97
1368 1491 1.699634 CACAGAAAGAACCTCAGGGGA 59.300 52.381 0.00 0.00 38.76 4.81
1369 1492 1.884067 GCACAGAAAGAACCTCAGGGG 60.884 57.143 0.00 0.00 41.89 4.79
1370 1493 1.072965 AGCACAGAAAGAACCTCAGGG 59.927 52.381 0.00 0.00 38.88 4.45
1371 1494 2.224378 TGAGCACAGAAAGAACCTCAGG 60.224 50.000 0.00 0.00 0.00 3.86
1372 1495 3.065655 CTGAGCACAGAAAGAACCTCAG 58.934 50.000 5.03 0.00 46.03 3.35
1373 1496 2.224378 CCTGAGCACAGAAAGAACCTCA 60.224 50.000 13.19 0.00 46.03 3.86
1374 1497 2.421619 CCTGAGCACAGAAAGAACCTC 58.578 52.381 13.19 0.00 46.03 3.85
1375 1498 1.544314 GCCTGAGCACAGAAAGAACCT 60.544 52.381 13.19 0.00 46.03 3.50
1414 1538 0.598680 CGATCCTCGGCCTGTTCATC 60.599 60.000 0.00 0.00 36.00 2.92
1495 1619 5.592104 ACGAAAACTTTGGAAGGAAATGT 57.408 34.783 0.00 0.00 0.00 2.71
1521 1649 3.911155 GAGTTGCCGCGCAGTTTCG 62.911 63.158 8.75 0.00 40.61 3.46
1530 1658 1.805945 CTACCGTCAGAGTTGCCGC 60.806 63.158 0.00 0.00 0.00 6.53
1557 1688 4.209080 TCAAAATTCATCATCCGTCGATCG 59.791 41.667 9.36 9.36 39.52 3.69
1564 1695 4.036027 CCTCCTGTCAAAATTCATCATCCG 59.964 45.833 0.00 0.00 0.00 4.18
1570 1705 4.043310 TCCACTCCTCCTGTCAAAATTCAT 59.957 41.667 0.00 0.00 0.00 2.57
1620 1755 2.742372 GCACGCCGACAGGAACAT 60.742 61.111 0.00 0.00 41.02 2.71
1746 1881 3.126703 ATGGTGGTGGTGGTGCGAA 62.127 57.895 0.00 0.00 0.00 4.70
1747 1882 3.545124 GATGGTGGTGGTGGTGCGA 62.545 63.158 0.00 0.00 0.00 5.10
1771 1906 2.606725 GCTGACGATGATGGTGAGAAAG 59.393 50.000 0.00 0.00 0.00 2.62
1778 1913 0.463204 CTCAGGCTGACGATGATGGT 59.537 55.000 14.43 0.00 0.00 3.55
1779 1914 0.749049 TCTCAGGCTGACGATGATGG 59.251 55.000 14.43 1.07 0.00 3.51
1780 1915 2.035576 TGATCTCAGGCTGACGATGATG 59.964 50.000 24.52 11.39 0.00 3.07
1781 1916 2.314246 TGATCTCAGGCTGACGATGAT 58.686 47.619 24.52 20.10 0.00 2.45
1798 1934 2.882761 CACTCATTGATTCCGCCATGAT 59.117 45.455 0.00 0.00 0.00 2.45
1816 1952 1.000163 CTTGTAGTCCGTCTGCACACT 60.000 52.381 0.00 0.00 38.42 3.55
2128 2279 4.536364 AAATGTCTGTCGTTCAGTGTTG 57.464 40.909 9.34 0.00 43.97 3.33
2139 2290 7.503521 AAAAGAGAGAAGGAAAATGTCTGTC 57.496 36.000 0.00 0.00 33.12 3.51
2140 2291 7.888250 AAAAAGAGAGAAGGAAAATGTCTGT 57.112 32.000 0.00 0.00 0.00 3.41
2193 2344 6.845302 TCGAAAGAATCTTCCATGAATGTTG 58.155 36.000 0.00 0.00 37.03 3.33
2235 2398 9.595823 AACACGATACATTAGCAACTTATTACT 57.404 29.630 0.00 0.00 0.00 2.24
2281 2444 9.400638 GATCCTAAGTTATTATCTTGTCAGTCG 57.599 37.037 0.00 0.00 0.00 4.18
2356 2522 4.522405 TATCCTGAGATTAGCAGTCTCTGC 59.478 45.833 13.00 13.00 44.31 4.26
2389 2555 5.923733 ATGAGGTCAAGTCTAACAGTAGG 57.076 43.478 0.00 0.00 0.00 3.18
2397 2567 5.046304 CCAGGAAGAAATGAGGTCAAGTCTA 60.046 44.000 0.00 0.00 0.00 2.59
2512 2709 1.332375 CCTGGCGACGTCAAAGAAAAA 59.668 47.619 17.16 0.00 0.00 1.94
2513 2710 0.941542 CCTGGCGACGTCAAAGAAAA 59.058 50.000 17.16 0.00 0.00 2.29
2514 2711 0.105224 TCCTGGCGACGTCAAAGAAA 59.895 50.000 17.16 0.00 0.00 2.52
2515 2712 0.105224 TTCCTGGCGACGTCAAAGAA 59.895 50.000 17.16 7.04 0.00 2.52
2516 2713 0.105224 TTTCCTGGCGACGTCAAAGA 59.895 50.000 17.16 0.09 0.00 2.52
2517 2714 0.512952 CTTTCCTGGCGACGTCAAAG 59.487 55.000 17.16 12.26 0.00 2.77
2518 2715 0.179067 ACTTTCCTGGCGACGTCAAA 60.179 50.000 17.16 6.35 0.00 2.69
2519 2716 0.599204 GACTTTCCTGGCGACGTCAA 60.599 55.000 17.16 0.00 0.00 3.18
2520 2717 1.006571 GACTTTCCTGGCGACGTCA 60.007 57.895 17.16 0.59 0.00 4.35
2521 2718 2.087009 CGACTTTCCTGGCGACGTC 61.087 63.158 5.18 5.18 0.00 4.34
2522 2719 2.049433 CGACTTTCCTGGCGACGT 60.049 61.111 0.00 0.00 0.00 4.34
2523 2720 3.479269 GCGACTTTCCTGGCGACG 61.479 66.667 0.00 0.00 0.00 5.12
2524 2721 2.357034 TGCGACTTTCCTGGCGAC 60.357 61.111 0.00 0.00 0.00 5.19
2525 2722 2.048222 CTGCGACTTTCCTGGCGA 60.048 61.111 0.00 0.00 0.00 5.54
2526 2723 3.793144 GCTGCGACTTTCCTGGCG 61.793 66.667 0.00 0.00 0.00 5.69
2527 2724 1.986575 GATGCTGCGACTTTCCTGGC 61.987 60.000 0.00 0.00 0.00 4.85
2528 2725 0.674581 TGATGCTGCGACTTTCCTGG 60.675 55.000 0.00 0.00 0.00 4.45
2529 2726 0.725686 CTGATGCTGCGACTTTCCTG 59.274 55.000 0.00 0.00 0.00 3.86
2530 2727 0.322975 ACTGATGCTGCGACTTTCCT 59.677 50.000 0.00 0.00 0.00 3.36
2531 2728 2.010145 TACTGATGCTGCGACTTTCC 57.990 50.000 0.00 0.00 0.00 3.13
2532 2729 4.606457 ATTTACTGATGCTGCGACTTTC 57.394 40.909 0.00 0.00 0.00 2.62
2533 2730 4.216257 ACAATTTACTGATGCTGCGACTTT 59.784 37.500 0.00 0.00 0.00 2.66
2534 2731 3.753272 ACAATTTACTGATGCTGCGACTT 59.247 39.130 0.00 0.00 0.00 3.01
2535 2732 3.338249 ACAATTTACTGATGCTGCGACT 58.662 40.909 0.00 0.00 0.00 4.18
2536 2733 3.747099 ACAATTTACTGATGCTGCGAC 57.253 42.857 0.00 0.00 0.00 5.19
2561 2758 1.514228 CGTACTGATGCTGCGACGT 60.514 57.895 0.00 0.00 0.00 4.34
2563 2760 1.464429 CGTCGTACTGATGCTGCGAC 61.464 60.000 0.00 0.00 45.52 5.19
2564 2761 1.226295 CGTCGTACTGATGCTGCGA 60.226 57.895 0.00 0.00 0.00 5.10
2565 2762 0.592500 ATCGTCGTACTGATGCTGCG 60.593 55.000 0.00 0.00 33.35 5.18
2566 2763 2.311462 CTATCGTCGTACTGATGCTGC 58.689 52.381 0.00 0.00 33.35 5.25
2567 2764 2.548480 TCCTATCGTCGTACTGATGCTG 59.452 50.000 0.00 0.00 33.35 4.41
2568 2765 2.548904 GTCCTATCGTCGTACTGATGCT 59.451 50.000 0.00 0.00 33.35 3.79
2569 2766 2.548904 AGTCCTATCGTCGTACTGATGC 59.451 50.000 0.00 0.00 33.35 3.91
2855 3104 6.598753 ACACGGTGTAGATATGTTAATTGC 57.401 37.500 12.96 0.00 0.00 3.56
2861 3110 7.309621 GGGATACATACACGGTGTAGATATGTT 60.310 40.741 24.37 15.67 36.14 2.71
2879 3128 6.271159 GGAAGACTAGGATCTTTGGGATACAT 59.729 42.308 0.00 0.00 39.08 2.29
2881 3130 5.602978 TGGAAGACTAGGATCTTTGGGATAC 59.397 44.000 0.00 0.00 39.08 2.24
2982 3231 1.201965 CGTCAAATGAAAGCTCTCGCC 60.202 52.381 0.00 0.00 36.60 5.54
2985 3234 1.806542 TGCCGTCAAATGAAAGCTCTC 59.193 47.619 0.00 0.00 0.00 3.20
3023 3272 4.688021 GACTGATCATACCTGTCCTTGTC 58.312 47.826 0.00 0.00 0.00 3.18
3031 3280 3.119137 TGGTTGACGACTGATCATACCTG 60.119 47.826 0.00 0.00 32.75 4.00
3032 3281 3.096852 TGGTTGACGACTGATCATACCT 58.903 45.455 0.00 0.00 32.75 3.08
3079 3328 6.095377 GCTTCATCAGTAAGGAAACAAATGG 58.905 40.000 0.00 0.00 0.00 3.16
3081 3330 6.012745 AGGCTTCATCAGTAAGGAAACAAAT 58.987 36.000 0.00 0.00 0.00 2.32
3082 3331 5.385198 AGGCTTCATCAGTAAGGAAACAAA 58.615 37.500 0.00 0.00 0.00 2.83
3109 3359 3.009916 AGGATGTGAAGGAATTGCAGAGT 59.990 43.478 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.