Multiple sequence alignment - TraesCS4A01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G019700 chr4A 100.000 5168 0 0 1 5168 12991713 12996880 0.000000e+00 9544.0
1 TraesCS4A01G019700 chr4A 95.840 625 22 1 2426 3046 12994044 12994668 0.000000e+00 1007.0
2 TraesCS4A01G019700 chr4A 95.840 625 22 1 2332 2956 12994138 12994758 0.000000e+00 1007.0
3 TraesCS4A01G019700 chr4A 94.393 535 26 1 2516 3046 12994044 12994578 0.000000e+00 819.0
4 TraesCS4A01G019700 chr4A 94.393 535 26 1 2332 2866 12994228 12994758 0.000000e+00 819.0
5 TraesCS4A01G019700 chr4A 93.483 445 25 1 2606 3046 12994044 12994488 0.000000e+00 658.0
6 TraesCS4A01G019700 chr4A 93.483 445 25 1 2332 2776 12994318 12994758 0.000000e+00 658.0
7 TraesCS4A01G019700 chr4A 91.831 355 25 1 2696 3046 12994044 12994398 4.650000e-135 492.0
8 TraesCS4A01G019700 chr4A 91.831 355 25 1 2332 2686 12994408 12994758 4.650000e-135 492.0
9 TraesCS4A01G019700 chr4A 89.057 265 25 1 2332 2596 12994498 12994758 4.990000e-85 326.0
10 TraesCS4A01G019700 chr4A 76.330 376 51 25 4629 4976 15777170 15776805 3.200000e-37 167.0
11 TraesCS4A01G019700 chr4A 82.759 116 16 1 801 916 130337789 130337900 3.290000e-17 100.0
12 TraesCS4A01G019700 chr4D 95.270 2114 81 4 2609 4708 455188572 455186464 0.000000e+00 3332.0
13 TraesCS4A01G019700 chr4D 94.048 1008 52 3 1772 2776 455189138 455188136 0.000000e+00 1522.0
14 TraesCS4A01G019700 chr4D 85.221 1042 64 22 609 1624 455190248 455189271 0.000000e+00 989.0
15 TraesCS4A01G019700 chr4D 90.247 687 25 10 1 677 455190897 455190243 0.000000e+00 859.0
16 TraesCS4A01G019700 chr4D 97.228 469 12 1 4697 5164 455184075 455183607 0.000000e+00 793.0
17 TraesCS4A01G019700 chr4D 95.465 441 19 1 2426 2866 455188575 455188136 0.000000e+00 702.0
18 TraesCS4A01G019700 chr4D 95.011 441 21 1 2516 2956 455188575 455188136 0.000000e+00 691.0
19 TraesCS4A01G019700 chr4D 96.254 347 12 1 2699 3045 455188572 455188227 7.510000e-158 568.0
20 TraesCS4A01G019700 chr4D 88.920 352 34 2 2335 2686 455188482 455188136 3.700000e-116 429.0
21 TraesCS4A01G019700 chr4D 88.604 351 34 5 1419 1769 455189431 455189087 6.190000e-114 422.0
22 TraesCS4A01G019700 chr4D 95.349 258 12 0 2789 3046 455188572 455188315 1.340000e-110 411.0
23 TraesCS4A01G019700 chr4D 93.452 168 11 0 2879 3046 455188572 455188405 3.090000e-62 250.0
24 TraesCS4A01G019700 chr4D 75.332 377 56 26 4626 4975 451168570 451168936 4.170000e-31 147.0
25 TraesCS4A01G019700 chr4D 82.558 172 24 1 1410 1581 455189395 455189230 4.170000e-31 147.0
26 TraesCS4A01G019700 chr4B 94.715 1968 84 8 3010 4958 567654993 567653027 0.000000e+00 3040.0
27 TraesCS4A01G019700 chr4B 90.508 1043 55 17 1403 2439 567655998 567654994 0.000000e+00 1338.0
28 TraesCS4A01G019700 chr4B 86.697 887 51 22 146 1020 567660411 567659580 0.000000e+00 922.0
29 TraesCS4A01G019700 chr4B 95.928 221 9 0 4948 5168 567645746 567645526 4.920000e-95 359.0
30 TraesCS4A01G019700 chr4B 88.128 219 14 1 1409 1627 567656037 567655831 3.090000e-62 250.0
31 TraesCS4A01G019700 chr4B 90.341 176 10 4 1013 1181 567659553 567659378 1.870000e-54 224.0
32 TraesCS4A01G019700 chr4B 76.455 378 53 25 4626 4976 564385251 564385619 6.880000e-39 172.0
33 TraesCS4A01G019700 chr1B 85.062 241 30 4 101 339 16775941 16775705 1.860000e-59 241.0
34 TraesCS4A01G019700 chr1B 88.372 86 6 2 831 916 21839174 21839093 3.290000e-17 100.0
35 TraesCS4A01G019700 chr5B 83.404 235 31 6 101 331 527594509 527594739 1.460000e-50 211.0
36 TraesCS4A01G019700 chr5B 83.404 235 31 6 101 331 544400951 544400721 1.460000e-50 211.0
37 TraesCS4A01G019700 chr6A 82.573 241 36 3 99 336 42335280 42335517 1.890000e-49 207.0
38 TraesCS4A01G019700 chr5D 82.573 241 32 8 101 336 385892438 385892673 2.440000e-48 204.0
39 TraesCS4A01G019700 chr5D 83.333 120 13 3 798 916 300913047 300912934 2.550000e-18 104.0
40 TraesCS4A01G019700 chr1D 82.305 243 35 6 101 339 411294601 411294363 2.440000e-48 204.0
41 TraesCS4A01G019700 chr1D 97.059 34 0 1 409 441 494552367 494552400 7.230000e-04 56.5
42 TraesCS4A01G019700 chr5A 81.893 243 38 3 100 339 607393575 607393336 3.160000e-47 200.0
43 TraesCS4A01G019700 chr5A 96.774 31 1 0 411 441 593352129 593352159 9.000000e-03 52.8
44 TraesCS4A01G019700 chr7B 83.333 120 13 3 798 916 493228397 493228510 2.550000e-18 104.0
45 TraesCS4A01G019700 chr7A 100.000 30 0 0 412 441 683482282 683482311 7.230000e-04 56.5
46 TraesCS4A01G019700 chr3B 100.000 30 0 0 412 441 512518072 512518043 7.230000e-04 56.5
47 TraesCS4A01G019700 chrUn 90.476 42 1 3 414 455 92297565 92297603 9.000000e-03 52.8
48 TraesCS4A01G019700 chr2D 94.286 35 1 1 407 441 589495448 589495481 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G019700 chr4A 12991713 12996880 5167 False 1582.2 9544 94.015100 1 5168 10 chr4A.!!$F2 5167
1 TraesCS4A01G019700 chr4D 455183607 455190897 7290 True 855.0 3332 92.125154 1 5164 13 chr4D.!!$R1 5163
2 TraesCS4A01G019700 chr4B 567653027 567660411 7384 True 1154.8 3040 90.077800 146 4958 5 chr4B.!!$R2 4812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 1017 0.884514 GAGCTCCTTTTTGTGGCTCC 59.115 55.0 0.87 0.00 42.20 4.70 F
1862 5259 0.322456 CATCACCACAACGTCCCCAT 60.322 55.0 0.00 0.00 0.00 4.00 F
2523 5920 0.108804 CTGAATTTGCCTGCCTGCTG 60.109 55.0 0.00 0.00 0.00 4.41 F
4095 7514 0.241481 AAGAGAACGAGTCGTCCAGC 59.759 55.0 20.18 8.98 39.99 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 5582 0.106015 ACCTTGCTGCCCTCTTTGTT 60.106 50.000 0.0 0.0 0.00 2.83 R
2961 6358 0.253894 ACATATGCAGCAGTCAGGCA 59.746 50.000 0.0 0.0 42.43 4.75 R
4131 7550 0.034574 TGGGGATGTTGGGATTGACG 60.035 55.000 0.0 0.0 0.00 4.35 R
5101 10932 4.333913 ACATGCTGCCAACAAAAATGTA 57.666 36.364 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.450211 GATGGGTATGGGGGTGACG 59.550 63.158 0.00 0.00 0.00 4.35
34 35 2.052047 GATGGGTATGGGGGTGACGG 62.052 65.000 0.00 0.00 0.00 4.79
52 53 1.084370 GGTCAGCTCGGACATTTCGG 61.084 60.000 6.54 0.00 39.59 4.30
138 139 2.360475 AGCTTTTGGGCTCGGCTC 60.360 61.111 0.00 0.00 38.24 4.70
139 140 3.804193 GCTTTTGGGCTCGGCTCG 61.804 66.667 0.00 0.00 0.00 5.03
140 141 3.804193 CTTTTGGGCTCGGCTCGC 61.804 66.667 0.00 0.00 0.00 5.03
351 352 1.653920 GAAACGAGTCGACGACTGCG 61.654 60.000 33.68 31.60 43.53 5.18
376 377 3.128349 GAGTAGAGTACAGCGAGAGAGG 58.872 54.545 0.00 0.00 0.00 3.69
378 379 2.032680 AGAGTACAGCGAGAGAGGAC 57.967 55.000 0.00 0.00 0.00 3.85
418 423 4.069232 CCTCACTTCTCGCCGCCA 62.069 66.667 0.00 0.00 0.00 5.69
419 424 2.811317 CTCACTTCTCGCCGCCAC 60.811 66.667 0.00 0.00 0.00 5.01
420 425 4.373116 TCACTTCTCGCCGCCACC 62.373 66.667 0.00 0.00 0.00 4.61
584 601 1.667830 ACGAACCACTCATGTGCGG 60.668 57.895 0.29 0.29 42.54 5.69
605 622 4.329545 GCTGTGGACCGCCTTCCA 62.330 66.667 1.74 0.00 43.83 3.53
632 649 1.153842 CGTACGTCCATGAGCAGCA 60.154 57.895 7.22 0.00 0.00 4.41
719 799 4.767255 CGACCACCCAGCTCCAGC 62.767 72.222 0.00 0.00 42.49 4.85
742 822 2.892425 GCCGCATCCGTCTTCCTG 60.892 66.667 0.00 0.00 0.00 3.86
784 866 1.211457 GACCACCCAGCTTCATCAGAT 59.789 52.381 0.00 0.00 0.00 2.90
785 867 1.211457 ACCACCCAGCTTCATCAGATC 59.789 52.381 0.00 0.00 0.00 2.75
786 868 1.211212 CCACCCAGCTTCATCAGATCA 59.789 52.381 0.00 0.00 0.00 2.92
787 869 2.562635 CACCCAGCTTCATCAGATCAG 58.437 52.381 0.00 0.00 0.00 2.90
788 870 2.169978 CACCCAGCTTCATCAGATCAGA 59.830 50.000 0.00 0.00 0.00 3.27
789 871 2.170187 ACCCAGCTTCATCAGATCAGAC 59.830 50.000 0.00 0.00 0.00 3.51
790 872 2.435069 CCCAGCTTCATCAGATCAGACT 59.565 50.000 0.00 0.00 0.00 3.24
791 873 3.493002 CCCAGCTTCATCAGATCAGACTC 60.493 52.174 0.00 0.00 0.00 3.36
792 874 3.373849 CAGCTTCATCAGATCAGACTCG 58.626 50.000 0.00 0.00 0.00 4.18
793 875 2.361757 AGCTTCATCAGATCAGACTCGG 59.638 50.000 0.00 0.00 0.00 4.63
794 876 2.360483 GCTTCATCAGATCAGACTCGGA 59.640 50.000 0.00 0.00 0.00 4.55
795 877 3.550639 GCTTCATCAGATCAGACTCGGAG 60.551 52.174 2.83 2.83 0.00 4.63
796 878 2.580962 TCATCAGATCAGACTCGGAGG 58.419 52.381 10.23 0.00 0.00 4.30
878 962 2.029073 CAGTGACTTGGCGGACGT 59.971 61.111 0.00 0.00 0.00 4.34
930 1017 0.884514 GAGCTCCTTTTTGTGGCTCC 59.115 55.000 0.87 0.00 42.20 4.70
1073 1201 1.221021 GAACCCCACATCCGTCTCC 59.779 63.158 0.00 0.00 0.00 3.71
1183 1319 2.303022 GAGACCATGGAGGAGTTCAACA 59.697 50.000 21.47 0.00 41.22 3.33
1184 1320 2.711009 AGACCATGGAGGAGTTCAACAA 59.289 45.455 21.47 0.00 41.22 2.83
1201 1349 4.945543 TCAACAACATGGAGATGATTGAGG 59.054 41.667 0.00 0.00 31.66 3.86
1207 1355 2.475155 TGGAGATGATTGAGGCTCTGT 58.525 47.619 16.72 3.87 0.00 3.41
1227 1375 3.810812 GAGGACGACTCCGACGAT 58.189 61.111 0.00 0.00 42.22 3.73
1228 1376 1.352404 GAGGACGACTCCGACGATG 59.648 63.158 0.00 0.00 42.22 3.84
1229 1377 1.078637 AGGACGACTCCGACGATGA 60.079 57.895 0.00 0.00 42.22 2.92
1231 1379 1.062206 GACGACTCCGACGATGACC 59.938 63.158 0.00 0.00 39.50 4.02
1232 1380 1.367599 GACGACTCCGACGATGACCT 61.368 60.000 0.00 0.00 39.50 3.85
1234 1382 1.366854 CGACTCCGACGATGACCTCA 61.367 60.000 0.00 0.00 38.22 3.86
1235 1383 0.809385 GACTCCGACGATGACCTCAA 59.191 55.000 0.00 0.00 0.00 3.02
1236 1384 0.811915 ACTCCGACGATGACCTCAAG 59.188 55.000 0.00 0.00 0.00 3.02
1386 4700 2.359975 GCCTCCAACGGGTTCCTG 60.360 66.667 0.00 0.00 34.93 3.86
1599 4913 1.739562 CTGCTTCGCTTCGCTTCCT 60.740 57.895 0.00 0.00 0.00 3.36
1764 5158 2.953303 GGCGACGCTTACTACGGC 60.953 66.667 20.77 0.00 42.98 5.68
1765 5159 2.953303 GCGACGCTTACTACGGCC 60.953 66.667 13.73 0.00 34.12 6.13
1766 5160 2.278401 CGACGCTTACTACGGCCC 60.278 66.667 0.00 0.00 34.12 5.80
1767 5161 2.278401 GACGCTTACTACGGCCCG 60.278 66.667 0.00 0.00 30.32 6.13
1768 5162 4.503314 ACGCTTACTACGGCCCGC 62.503 66.667 1.23 0.00 34.00 6.13
1791 5185 3.512516 GGCGACGCCTACTACGGT 61.513 66.667 31.30 0.00 46.69 4.83
1792 5186 2.023882 GCGACGCCTACTACGGTC 59.976 66.667 9.14 0.00 34.00 4.79
1793 5187 2.711924 CGACGCCTACTACGGTCC 59.288 66.667 0.00 0.00 34.00 4.46
1794 5188 2.711924 GACGCCTACTACGGTCCG 59.288 66.667 10.48 10.48 34.00 4.79
1795 5189 3.460854 GACGCCTACTACGGTCCGC 62.461 68.421 12.28 0.00 34.00 5.54
1796 5190 4.602696 CGCCTACTACGGTCCGCG 62.603 72.222 12.28 0.00 36.98 6.46
1797 5191 4.919987 GCCTACTACGGTCCGCGC 62.920 72.222 12.28 0.00 0.00 6.86
1798 5192 4.602696 CCTACTACGGTCCGCGCG 62.603 72.222 25.67 25.67 0.00 6.86
1799 5193 4.602696 CTACTACGGTCCGCGCGG 62.603 72.222 42.13 42.13 0.00 6.46
1821 5215 1.357690 CGATTCCTACTACGGCGCA 59.642 57.895 10.83 0.00 0.00 6.09
1862 5259 0.322456 CATCACCACAACGTCCCCAT 60.322 55.000 0.00 0.00 0.00 4.00
1878 5275 1.109920 CCATCGGATCCGTGGTCTCT 61.110 60.000 31.32 12.44 40.74 3.10
2128 5525 1.071542 TGCTTCAATCAAGGGACGACA 59.928 47.619 0.00 0.00 31.94 4.35
2154 5551 4.465512 CGCATTGTGCTCGGCCAC 62.466 66.667 2.24 0.00 42.25 5.01
2236 5633 4.698575 GCTAGTTCATAACTCAAGAGGGG 58.301 47.826 1.73 0.00 41.77 4.79
2356 5753 6.917533 GCCTGCTGCATATATAGTTTTGATT 58.082 36.000 1.31 0.00 40.77 2.57
2357 5754 7.373493 GCCTGCTGCATATATAGTTTTGATTT 58.627 34.615 1.31 0.00 40.77 2.17
2358 5755 7.327761 GCCTGCTGCATATATAGTTTTGATTTG 59.672 37.037 1.31 0.00 40.77 2.32
2359 5756 7.811236 CCTGCTGCATATATAGTTTTGATTTGG 59.189 37.037 1.31 0.00 0.00 3.28
2360 5757 8.462589 TGCTGCATATATAGTTTTGATTTGGA 57.537 30.769 0.00 0.00 0.00 3.53
2361 5758 8.911965 TGCTGCATATATAGTTTTGATTTGGAA 58.088 29.630 0.00 0.00 0.00 3.53
2362 5759 9.185192 GCTGCATATATAGTTTTGATTTGGAAC 57.815 33.333 0.00 0.00 0.00 3.62
2372 5769 8.255394 AGTTTTGATTTGGAACTTTCTGTTTG 57.745 30.769 0.00 0.00 39.30 2.93
2373 5770 7.877612 AGTTTTGATTTGGAACTTTCTGTTTGT 59.122 29.630 0.00 0.00 39.30 2.83
2374 5771 9.145865 GTTTTGATTTGGAACTTTCTGTTTGTA 57.854 29.630 0.00 0.00 39.30 2.41
2375 5772 9.883142 TTTTGATTTGGAACTTTCTGTTTGTAT 57.117 25.926 0.00 0.00 39.30 2.29
2376 5773 8.870160 TTGATTTGGAACTTTCTGTTTGTATG 57.130 30.769 0.00 0.00 39.30 2.39
2377 5774 6.922957 TGATTTGGAACTTTCTGTTTGTATGC 59.077 34.615 0.00 0.00 39.30 3.14
2378 5775 6.463995 TTTGGAACTTTCTGTTTGTATGCT 57.536 33.333 0.00 0.00 39.30 3.79
2379 5776 6.463995 TTGGAACTTTCTGTTTGTATGCTT 57.536 33.333 0.00 0.00 39.30 3.91
2380 5777 6.072112 TGGAACTTTCTGTTTGTATGCTTC 57.928 37.500 0.00 0.00 39.30 3.86
2381 5778 5.592282 TGGAACTTTCTGTTTGTATGCTTCA 59.408 36.000 0.00 0.00 39.30 3.02
2382 5779 6.265196 TGGAACTTTCTGTTTGTATGCTTCAT 59.735 34.615 0.00 0.00 39.30 2.57
2383 5780 7.147976 GGAACTTTCTGTTTGTATGCTTCATT 58.852 34.615 0.00 0.00 39.30 2.57
2384 5781 7.653311 GGAACTTTCTGTTTGTATGCTTCATTT 59.347 33.333 0.00 0.00 39.30 2.32
2385 5782 7.935338 ACTTTCTGTTTGTATGCTTCATTTG 57.065 32.000 0.00 0.00 0.00 2.32
2386 5783 6.421801 ACTTTCTGTTTGTATGCTTCATTTGC 59.578 34.615 0.00 0.00 0.00 3.68
2387 5784 5.450592 TCTGTTTGTATGCTTCATTTGCA 57.549 34.783 0.00 0.00 44.95 4.08
2402 5799 4.539152 GCATTGTGCACGTTCAGG 57.461 55.556 13.13 0.00 44.26 3.86
2403 5800 1.948508 GCATTGTGCACGTTCAGGA 59.051 52.632 13.13 0.00 44.26 3.86
2404 5801 0.523072 GCATTGTGCACGTTCAGGAT 59.477 50.000 13.13 0.00 44.26 3.24
2405 5802 1.737236 GCATTGTGCACGTTCAGGATA 59.263 47.619 13.13 0.00 44.26 2.59
2406 5803 2.161410 GCATTGTGCACGTTCAGGATAA 59.839 45.455 13.13 0.00 44.26 1.75
2407 5804 3.365868 GCATTGTGCACGTTCAGGATAAA 60.366 43.478 13.13 0.00 44.26 1.40
2408 5805 3.889196 TTGTGCACGTTCAGGATAAAC 57.111 42.857 13.13 0.00 0.00 2.01
2409 5806 3.120321 TGTGCACGTTCAGGATAAACT 57.880 42.857 13.13 0.00 0.00 2.66
2410 5807 3.064207 TGTGCACGTTCAGGATAAACTC 58.936 45.455 13.13 0.00 0.00 3.01
2411 5808 3.064207 GTGCACGTTCAGGATAAACTCA 58.936 45.455 0.00 0.00 0.00 3.41
2412 5809 3.123621 GTGCACGTTCAGGATAAACTCAG 59.876 47.826 0.00 0.00 0.00 3.35
2413 5810 3.006430 TGCACGTTCAGGATAAACTCAGA 59.994 43.478 0.00 0.00 0.00 3.27
2414 5811 3.994392 GCACGTTCAGGATAAACTCAGAA 59.006 43.478 0.00 0.00 0.00 3.02
2415 5812 4.631813 GCACGTTCAGGATAAACTCAGAAT 59.368 41.667 0.00 0.00 0.00 2.40
2416 5813 5.122396 GCACGTTCAGGATAAACTCAGAATT 59.878 40.000 0.00 0.00 0.00 2.17
2417 5814 6.348540 GCACGTTCAGGATAAACTCAGAATTT 60.349 38.462 0.00 0.00 0.00 1.82
2418 5815 7.017645 CACGTTCAGGATAAACTCAGAATTTG 58.982 38.462 0.00 0.00 0.00 2.32
2419 5816 6.149474 ACGTTCAGGATAAACTCAGAATTTGG 59.851 38.462 0.00 0.00 0.00 3.28
2420 5817 6.371548 CGTTCAGGATAAACTCAGAATTTGGA 59.628 38.462 0.00 0.00 0.00 3.53
2421 5818 7.413438 CGTTCAGGATAAACTCAGAATTTGGAG 60.413 40.741 5.93 5.93 37.18 3.86
2422 5819 6.418101 TCAGGATAAACTCAGAATTTGGAGG 58.582 40.000 10.81 0.00 35.45 4.30
2423 5820 5.067023 CAGGATAAACTCAGAATTTGGAGGC 59.933 44.000 10.81 0.00 35.45 4.70
2424 5821 4.339530 GGATAAACTCAGAATTTGGAGGCC 59.660 45.833 0.00 0.00 35.45 5.19
2425 5822 3.532641 AAACTCAGAATTTGGAGGCCT 57.467 42.857 3.86 3.86 35.45 5.19
2426 5823 2.503895 ACTCAGAATTTGGAGGCCTG 57.496 50.000 12.00 0.00 35.45 4.85
2427 5824 1.101331 CTCAGAATTTGGAGGCCTGC 58.899 55.000 18.95 18.95 0.00 4.85
2428 5825 0.323725 TCAGAATTTGGAGGCCTGCC 60.324 55.000 22.95 17.17 0.00 4.85
2447 5844 2.478134 GCCTGCTGCATATCTAGTTTCG 59.522 50.000 1.31 0.00 40.77 3.46
2448 5845 3.800261 GCCTGCTGCATATCTAGTTTCGA 60.800 47.826 1.31 0.00 40.77 3.71
2449 5846 4.564041 CCTGCTGCATATCTAGTTTCGAT 58.436 43.478 1.31 0.00 0.00 3.59
2502 5899 6.573617 GCATTGTGCATGTTTAGGATAAAC 57.426 37.500 5.64 5.64 44.26 2.01
2503 5900 6.332630 GCATTGTGCATGTTTAGGATAAACT 58.667 36.000 12.25 0.00 44.26 2.66
2504 5901 6.473455 GCATTGTGCATGTTTAGGATAAACTC 59.527 38.462 12.25 4.40 44.26 3.01
2505 5902 7.629222 GCATTGTGCATGTTTAGGATAAACTCT 60.629 37.037 12.25 0.07 44.26 3.24
2506 5903 6.741992 TGTGCATGTTTAGGATAAACTCTG 57.258 37.500 12.25 10.62 0.00 3.35
2507 5904 6.472016 TGTGCATGTTTAGGATAAACTCTGA 58.528 36.000 12.25 0.00 0.00 3.27
2508 5905 6.939730 TGTGCATGTTTAGGATAAACTCTGAA 59.060 34.615 12.25 4.02 0.00 3.02
2509 5906 7.611467 TGTGCATGTTTAGGATAAACTCTGAAT 59.389 33.333 12.25 0.00 0.00 2.57
2510 5907 8.462016 GTGCATGTTTAGGATAAACTCTGAATT 58.538 33.333 12.25 0.00 0.00 2.17
2511 5908 9.023962 TGCATGTTTAGGATAAACTCTGAATTT 57.976 29.630 12.25 0.00 0.00 1.82
2512 5909 9.294030 GCATGTTTAGGATAAACTCTGAATTTG 57.706 33.333 12.25 1.91 0.00 2.32
2513 5910 9.294030 CATGTTTAGGATAAACTCTGAATTTGC 57.706 33.333 12.25 0.00 0.00 3.68
2514 5911 7.826690 TGTTTAGGATAAACTCTGAATTTGCC 58.173 34.615 12.25 0.00 0.00 4.52
2515 5912 7.669722 TGTTTAGGATAAACTCTGAATTTGCCT 59.330 33.333 12.25 10.94 32.91 4.75
2516 5913 7.630242 TTAGGATAAACTCTGAATTTGCCTG 57.370 36.000 14.15 0.00 31.56 4.85
2517 5914 4.400567 AGGATAAACTCTGAATTTGCCTGC 59.599 41.667 6.92 0.00 0.00 4.85
2518 5915 4.440663 GGATAAACTCTGAATTTGCCTGCC 60.441 45.833 0.00 0.00 0.00 4.85
2519 5916 2.299326 AACTCTGAATTTGCCTGCCT 57.701 45.000 0.00 0.00 0.00 4.75
2520 5917 1.542492 ACTCTGAATTTGCCTGCCTG 58.458 50.000 0.00 0.00 0.00 4.85
2521 5918 0.172803 CTCTGAATTTGCCTGCCTGC 59.827 55.000 0.00 0.00 0.00 4.85
2522 5919 0.251474 TCTGAATTTGCCTGCCTGCT 60.251 50.000 0.00 0.00 0.00 4.24
2523 5920 0.108804 CTGAATTTGCCTGCCTGCTG 60.109 55.000 0.00 0.00 0.00 4.41
2524 5921 1.447314 GAATTTGCCTGCCTGCTGC 60.447 57.895 0.00 0.00 41.77 5.25
2537 5934 4.220533 GCCTGCTGCATATCTAGTTTTG 57.779 45.455 1.31 0.00 40.77 2.44
2538 5935 3.879295 GCCTGCTGCATATCTAGTTTTGA 59.121 43.478 1.31 0.00 40.77 2.69
2539 5936 4.518211 GCCTGCTGCATATCTAGTTTTGAT 59.482 41.667 1.31 0.00 40.77 2.57
2540 5937 5.009410 GCCTGCTGCATATCTAGTTTTGATT 59.991 40.000 1.31 0.00 40.77 2.57
2541 5938 6.460676 GCCTGCTGCATATCTAGTTTTGATTT 60.461 38.462 1.31 0.00 40.77 2.17
2542 5939 6.916387 CCTGCTGCATATCTAGTTTTGATTTG 59.084 38.462 1.31 0.00 0.00 2.32
2543 5940 6.798482 TGCTGCATATCTAGTTTTGATTTGG 58.202 36.000 0.00 0.00 0.00 3.28
2544 5941 6.602803 TGCTGCATATCTAGTTTTGATTTGGA 59.397 34.615 0.00 0.00 0.00 3.53
2545 5942 7.122501 TGCTGCATATCTAGTTTTGATTTGGAA 59.877 33.333 0.00 0.00 0.00 3.53
2546 5943 7.433425 GCTGCATATCTAGTTTTGATTTGGAAC 59.567 37.037 0.00 0.00 0.00 3.62
2547 5944 8.579850 TGCATATCTAGTTTTGATTTGGAACT 57.420 30.769 0.00 0.00 37.40 3.01
2548 5945 8.677300 TGCATATCTAGTTTTGATTTGGAACTC 58.323 33.333 0.00 0.00 35.43 3.01
2549 5946 8.897752 GCATATCTAGTTTTGATTTGGAACTCT 58.102 33.333 0.00 0.00 35.43 3.24
2553 5950 8.519799 TCTAGTTTTGATTTGGAACTCTTTGT 57.480 30.769 0.00 0.00 35.43 2.83
2554 5951 8.966868 TCTAGTTTTGATTTGGAACTCTTTGTT 58.033 29.630 0.00 0.00 42.38 2.83
2555 5952 9.586435 CTAGTTTTGATTTGGAACTCTTTGTTT 57.414 29.630 0.00 0.00 39.30 2.83
2556 5953 8.255394 AGTTTTGATTTGGAACTCTTTGTTTG 57.745 30.769 0.00 0.00 39.30 2.93
2557 5954 7.877612 AGTTTTGATTTGGAACTCTTTGTTTGT 59.122 29.630 0.00 0.00 39.30 2.83
2558 5955 7.593875 TTTGATTTGGAACTCTTTGTTTGTG 57.406 32.000 0.00 0.00 39.30 3.33
2559 5956 6.279513 TGATTTGGAACTCTTTGTTTGTGT 57.720 33.333 0.00 0.00 39.30 3.72
2560 5957 7.397892 TGATTTGGAACTCTTTGTTTGTGTA 57.602 32.000 0.00 0.00 39.30 2.90
2561 5958 7.831753 TGATTTGGAACTCTTTGTTTGTGTAA 58.168 30.769 0.00 0.00 39.30 2.41
2562 5959 8.474025 TGATTTGGAACTCTTTGTTTGTGTAAT 58.526 29.630 0.00 0.00 39.30 1.89
2563 5960 9.313118 GATTTGGAACTCTTTGTTTGTGTAATT 57.687 29.630 0.00 0.00 39.30 1.40
2577 5974 8.768955 TGTTTGTGTAATTAATTTCCATTGTGC 58.231 29.630 5.91 0.00 0.00 4.57
2578 5975 8.768955 GTTTGTGTAATTAATTTCCATTGTGCA 58.231 29.630 5.91 0.00 0.00 4.57
2579 5976 9.499479 TTTGTGTAATTAATTTCCATTGTGCAT 57.501 25.926 5.91 0.00 0.00 3.96
2580 5977 8.476657 TGTGTAATTAATTTCCATTGTGCATG 57.523 30.769 5.91 0.00 0.00 4.06
2581 5978 8.093307 TGTGTAATTAATTTCCATTGTGCATGT 58.907 29.630 5.91 0.00 0.00 3.21
2582 5979 8.934825 GTGTAATTAATTTCCATTGTGCATGTT 58.065 29.630 5.91 0.00 0.00 2.71
2619 6016 1.385528 TTGCCTGACTGCTGCATATG 58.614 50.000 1.31 0.00 34.51 1.78
2630 6027 6.375174 TGACTGCTGCATATGTAGTTTTGATT 59.625 34.615 20.18 0.97 30.86 2.57
2661 6058 6.634805 TCTTTGTTTGTGTGCTTAATTTGGA 58.365 32.000 0.00 0.00 0.00 3.53
2751 6148 6.634805 TCTTTGTTTGTGTGCTTAATTTGGA 58.365 32.000 0.00 0.00 0.00 3.53
2811 6208 7.094248 TGACTGCTGCATATGTAGTTTTGATTT 60.094 33.333 20.18 0.00 30.86 2.17
2865 6262 4.910195 TGTGCATGTTCAGGATAAACTCT 58.090 39.130 0.00 0.00 0.00 3.24
2877 6274 5.649395 CAGGATAAACTCTGAATTTGCCTGA 59.351 40.000 20.80 0.00 41.10 3.86
2883 6280 2.156917 TCTGAATTTGCCTGACTGCTG 58.843 47.619 0.00 0.00 0.00 4.41
2908 6305 8.243426 TGCATATGTAGTTTTGATTTGGAACTC 58.757 33.333 4.29 0.00 35.43 3.01
2914 6311 8.527810 TGTAGTTTTGATTTGGAACTCTTTGTT 58.472 29.630 0.00 0.00 42.38 2.83
2927 6324 6.756542 GGAACTCTTTGTTTGTGTGCTTAATT 59.243 34.615 0.00 0.00 39.30 1.40
2928 6325 7.277760 GGAACTCTTTGTTTGTGTGCTTAATTT 59.722 33.333 0.00 0.00 39.30 1.82
2929 6326 7.524294 ACTCTTTGTTTGTGTGCTTAATTTG 57.476 32.000 0.00 0.00 0.00 2.32
2930 6327 6.534793 ACTCTTTGTTTGTGTGCTTAATTTGG 59.465 34.615 0.00 0.00 0.00 3.28
2931 6328 6.634805 TCTTTGTTTGTGTGCTTAATTTGGA 58.365 32.000 0.00 0.00 0.00 3.53
2932 6329 7.271511 TCTTTGTTTGTGTGCTTAATTTGGAT 58.728 30.769 0.00 0.00 0.00 3.41
2933 6330 7.768120 TCTTTGTTTGTGTGCTTAATTTGGATT 59.232 29.630 0.00 0.00 0.00 3.01
2934 6331 6.841443 TGTTTGTGTGCTTAATTTGGATTG 57.159 33.333 0.00 0.00 0.00 2.67
2935 6332 6.344500 TGTTTGTGTGCTTAATTTGGATTGT 58.656 32.000 0.00 0.00 0.00 2.71
2936 6333 6.257411 TGTTTGTGTGCTTAATTTGGATTGTG 59.743 34.615 0.00 0.00 0.00 3.33
2937 6334 4.305769 TGTGTGCTTAATTTGGATTGTGC 58.694 39.130 0.00 0.00 0.00 4.57
2938 6335 4.202192 TGTGTGCTTAATTTGGATTGTGCA 60.202 37.500 0.00 0.00 34.66 4.57
2939 6336 4.931002 GTGTGCTTAATTTGGATTGTGCAT 59.069 37.500 0.00 0.00 37.24 3.96
2940 6337 4.930405 TGTGCTTAATTTGGATTGTGCATG 59.070 37.500 0.00 0.00 37.24 4.06
2941 6338 4.931002 GTGCTTAATTTGGATTGTGCATGT 59.069 37.500 0.00 0.00 37.24 3.21
2942 6339 5.409214 GTGCTTAATTTGGATTGTGCATGTT 59.591 36.000 0.00 0.00 37.24 2.71
2943 6340 5.638657 TGCTTAATTTGGATTGTGCATGTTC 59.361 36.000 0.00 0.00 33.26 3.18
2944 6341 5.638657 GCTTAATTTGGATTGTGCATGTTCA 59.361 36.000 0.00 0.00 0.00 3.18
2945 6342 6.183360 GCTTAATTTGGATTGTGCATGTTCAG 60.183 38.462 0.00 0.00 0.00 3.02
2946 6343 3.663995 TTTGGATTGTGCATGTTCAGG 57.336 42.857 0.00 0.00 0.00 3.86
2947 6344 2.583024 TGGATTGTGCATGTTCAGGA 57.417 45.000 0.00 0.00 0.00 3.86
2948 6345 3.090210 TGGATTGTGCATGTTCAGGAT 57.910 42.857 0.00 0.00 0.00 3.24
2949 6346 4.233632 TGGATTGTGCATGTTCAGGATA 57.766 40.909 0.00 0.00 0.00 2.59
2950 6347 4.598022 TGGATTGTGCATGTTCAGGATAA 58.402 39.130 0.00 0.00 0.00 1.75
2951 6348 5.015515 TGGATTGTGCATGTTCAGGATAAA 58.984 37.500 0.00 0.00 0.00 1.40
2952 6349 5.105797 TGGATTGTGCATGTTCAGGATAAAC 60.106 40.000 0.00 0.00 0.00 2.01
2953 6350 5.126061 GGATTGTGCATGTTCAGGATAAACT 59.874 40.000 0.00 0.00 0.00 2.66
2954 6351 5.627499 TTGTGCATGTTCAGGATAAACTC 57.373 39.130 0.00 0.00 0.00 3.01
2955 6352 4.910195 TGTGCATGTTCAGGATAAACTCT 58.090 39.130 0.00 0.00 0.00 3.24
2956 6353 4.696877 TGTGCATGTTCAGGATAAACTCTG 59.303 41.667 0.00 0.00 0.00 3.35
2957 6354 4.937620 GTGCATGTTCAGGATAAACTCTGA 59.062 41.667 0.00 0.00 38.14 3.27
2958 6355 5.412594 GTGCATGTTCAGGATAAACTCTGAA 59.587 40.000 0.00 0.00 44.67 3.02
2964 6361 6.515272 TTCAGGATAAACTCTGAATTTGCC 57.485 37.500 0.00 0.00 42.81 4.52
2965 6362 5.819991 TCAGGATAAACTCTGAATTTGCCT 58.180 37.500 0.00 0.00 37.11 4.75
2966 6363 5.649395 TCAGGATAAACTCTGAATTTGCCTG 59.351 40.000 20.00 20.00 40.57 4.85
2967 6364 5.649395 CAGGATAAACTCTGAATTTGCCTGA 59.351 40.000 20.80 0.00 41.10 3.86
2968 6365 5.649831 AGGATAAACTCTGAATTTGCCTGAC 59.350 40.000 6.92 0.00 0.00 3.51
2969 6366 5.649831 GGATAAACTCTGAATTTGCCTGACT 59.350 40.000 0.00 0.00 0.00 3.41
2970 6367 4.843220 AAACTCTGAATTTGCCTGACTG 57.157 40.909 0.00 0.00 0.00 3.51
2971 6368 2.157738 ACTCTGAATTTGCCTGACTGC 58.842 47.619 0.00 0.00 0.00 4.40
2972 6369 2.224719 ACTCTGAATTTGCCTGACTGCT 60.225 45.455 0.00 0.00 0.00 4.24
2973 6370 2.156917 TCTGAATTTGCCTGACTGCTG 58.843 47.619 0.00 0.00 0.00 4.41
2974 6371 0.599558 TGAATTTGCCTGACTGCTGC 59.400 50.000 0.00 0.00 0.00 5.25
2975 6372 0.599558 GAATTTGCCTGACTGCTGCA 59.400 50.000 0.88 0.88 0.00 4.41
2976 6373 1.203994 GAATTTGCCTGACTGCTGCAT 59.796 47.619 1.31 0.00 34.51 3.96
2977 6374 2.133281 ATTTGCCTGACTGCTGCATA 57.867 45.000 1.31 0.00 34.51 3.14
2978 6375 2.133281 TTTGCCTGACTGCTGCATAT 57.867 45.000 1.31 0.00 34.51 1.78
2979 6376 1.385528 TTGCCTGACTGCTGCATATG 58.614 50.000 1.31 0.00 34.51 1.78
2980 6377 0.253894 TGCCTGACTGCTGCATATGT 59.746 50.000 1.31 0.00 0.00 2.29
2981 6378 1.485895 TGCCTGACTGCTGCATATGTA 59.514 47.619 1.31 0.00 0.00 2.29
2982 6379 2.141517 GCCTGACTGCTGCATATGTAG 58.858 52.381 15.77 15.77 0.00 2.74
2983 6380 2.484417 GCCTGACTGCTGCATATGTAGT 60.484 50.000 20.18 11.84 33.27 2.73
2984 6381 3.801698 CCTGACTGCTGCATATGTAGTT 58.198 45.455 20.18 6.98 30.86 2.24
2985 6382 4.194640 CCTGACTGCTGCATATGTAGTTT 58.805 43.478 20.18 6.66 30.86 2.66
2986 6383 4.637534 CCTGACTGCTGCATATGTAGTTTT 59.362 41.667 20.18 6.34 30.86 2.43
2987 6384 5.448225 CCTGACTGCTGCATATGTAGTTTTG 60.448 44.000 20.18 11.19 30.86 2.44
2988 6385 5.244755 TGACTGCTGCATATGTAGTTTTGA 58.755 37.500 20.18 2.13 30.86 2.69
2989 6386 5.882000 TGACTGCTGCATATGTAGTTTTGAT 59.118 36.000 20.18 3.03 30.86 2.57
2990 6387 6.375174 TGACTGCTGCATATGTAGTTTTGATT 59.625 34.615 20.18 0.97 30.86 2.57
2991 6388 7.094248 TGACTGCTGCATATGTAGTTTTGATTT 60.094 33.333 20.18 0.00 30.86 2.17
2992 6389 7.031372 ACTGCTGCATATGTAGTTTTGATTTG 58.969 34.615 20.18 5.16 0.00 2.32
2993 6390 6.331845 TGCTGCATATGTAGTTTTGATTTGG 58.668 36.000 20.18 0.00 0.00 3.28
2994 6391 6.152492 TGCTGCATATGTAGTTTTGATTTGGA 59.848 34.615 20.18 0.00 0.00 3.53
2995 6392 7.035004 GCTGCATATGTAGTTTTGATTTGGAA 58.965 34.615 20.18 0.00 0.00 3.53
2996 6393 7.009540 GCTGCATATGTAGTTTTGATTTGGAAC 59.990 37.037 20.18 0.00 0.00 3.62
2997 6394 8.121305 TGCATATGTAGTTTTGATTTGGAACT 57.879 30.769 4.29 0.00 37.40 3.01
2998 6395 8.243426 TGCATATGTAGTTTTGATTTGGAACTC 58.757 33.333 4.29 0.00 35.43 3.01
2999 6396 8.462016 GCATATGTAGTTTTGATTTGGAACTCT 58.538 33.333 4.29 0.00 35.43 3.24
3003 6400 8.062065 TGTAGTTTTGATTTGGAACTCTTTGT 57.938 30.769 0.00 0.00 35.43 2.83
3004 6401 8.527810 TGTAGTTTTGATTTGGAACTCTTTGTT 58.472 29.630 0.00 0.00 42.38 2.83
3005 6402 9.366216 GTAGTTTTGATTTGGAACTCTTTGTTT 57.634 29.630 0.00 0.00 39.30 2.83
3006 6403 8.255394 AGTTTTGATTTGGAACTCTTTGTTTG 57.745 30.769 0.00 0.00 39.30 2.93
3007 6404 7.877612 AGTTTTGATTTGGAACTCTTTGTTTGT 59.122 29.630 0.00 0.00 39.30 2.83
3008 6405 7.593875 TTTGATTTGGAACTCTTTGTTTGTG 57.406 32.000 0.00 0.00 39.30 3.33
3048 6445 6.070824 TGTGCATGTTCAGGATAAACTCTCTA 60.071 38.462 0.00 0.00 0.00 2.43
3072 6469 3.127533 GTGATCACAGCGGTGGCC 61.128 66.667 21.07 9.46 45.32 5.36
3182 6579 4.201724 GCATCTCTTTAACATCGTGTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
3215 6612 5.474578 TTAAGTTGCAGTCAGTGATCTCT 57.525 39.130 0.00 0.00 0.00 3.10
3233 6634 9.352784 GTGATCTCTTCTAGATGCATACAATAC 57.647 37.037 0.00 0.00 45.35 1.89
3322 6723 3.297472 CCGTTTTCCTTCTTTTTCTCGC 58.703 45.455 0.00 0.00 0.00 5.03
3342 6743 3.114809 GCGACTCTGATTCAGATGACTG 58.885 50.000 16.48 7.46 39.92 3.51
3354 6755 5.659440 TCAGATGACTGCTGTATGTGTTA 57.341 39.130 0.00 0.00 43.17 2.41
3404 6805 3.826236 CTTGACCAGCAACAGAGAATG 57.174 47.619 0.00 0.00 31.96 2.67
3465 6866 2.982470 GCGTGCTTCAGGAAAATTTCTG 59.018 45.455 5.65 0.91 0.00 3.02
3605 7013 1.029681 GTGTTGTGACCCCTTTGACC 58.970 55.000 0.00 0.00 0.00 4.02
3614 7022 1.252904 CCCCTTTGACCTGGTGCATG 61.253 60.000 2.82 0.00 0.00 4.06
3676 7084 2.449189 CTGAGATGAAGAAGCGACTCG 58.551 52.381 0.00 0.00 0.00 4.18
3688 7096 1.581954 CGACTCGTGGAGAAGCTGT 59.418 57.895 0.00 0.00 33.32 4.40
3726 7134 1.748122 GTGTGCAGATCAGCAGGGG 60.748 63.158 13.69 0.00 46.69 4.79
3787 7195 2.367241 TCCCTTGACACTGAAACGATGA 59.633 45.455 0.00 0.00 0.00 2.92
3818 7226 1.539929 GGATTCACTGATCGGCCTCAG 60.540 57.143 18.11 18.11 46.59 3.35
3845 7253 2.876091 TCGACTTTCTGCGATGGTAAG 58.124 47.619 0.00 0.00 0.00 2.34
3917 7325 4.388773 GTGCAGTCATGTAAGTTTCGATCA 59.611 41.667 0.00 0.00 0.00 2.92
4015 7434 5.646793 ACAATGATGATATACATGCAGGAGC 59.353 40.000 4.84 0.00 39.56 4.70
4021 7440 1.945387 ATACATGCAGGAGCTGAACG 58.055 50.000 4.84 0.00 42.74 3.95
4030 7449 1.598130 GAGCTGAACGCCAAGGTGT 60.598 57.895 0.00 0.00 40.39 4.16
4094 7513 1.267261 ACAAGAGAACGAGTCGTCCAG 59.733 52.381 20.18 8.57 39.99 3.86
4095 7514 0.241481 AAGAGAACGAGTCGTCCAGC 59.759 55.000 20.18 8.98 39.99 4.85
4131 7550 3.631451 GCCCGAGCGCTAAGATTC 58.369 61.111 11.50 0.00 0.00 2.52
4159 7578 0.112218 CAACATCCCCAACCTCCACA 59.888 55.000 0.00 0.00 0.00 4.17
4169 7588 4.148838 CCCAACCTCCACAACAATTAGAA 58.851 43.478 0.00 0.00 0.00 2.10
4172 7591 5.278463 CCAACCTCCACAACAATTAGAACAG 60.278 44.000 0.00 0.00 0.00 3.16
4379 7798 3.446570 GCTGCTGCCGGCTTGAAT 61.447 61.111 29.70 0.00 40.29 2.57
4393 7812 3.853671 GGCTTGAATGAAATTGTACGCTG 59.146 43.478 0.00 0.00 36.07 5.18
4420 7839 5.473066 AAACTGACAGCAGCCAAAATTAT 57.527 34.783 1.25 0.00 46.26 1.28
4498 7917 7.229306 TCAACAAACAAAGAACTATCAGCATCT 59.771 33.333 0.00 0.00 0.00 2.90
4510 7929 7.172868 ACTATCAGCATCTCATTATCCTCAG 57.827 40.000 0.00 0.00 0.00 3.35
5043 10874 1.408822 CCCCTGTAGGAATGACCAAGC 60.409 57.143 0.00 0.00 42.04 4.01
5095 10926 8.883731 AGCATACACACAGATAATAAGTTCAAC 58.116 33.333 0.00 0.00 0.00 3.18
5166 10997 3.055719 GGCAACGGCAAGCTAGCA 61.056 61.111 18.83 0.00 43.71 3.49
5167 10998 2.409870 GGCAACGGCAAGCTAGCAT 61.410 57.895 18.83 0.65 43.71 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.126424 GTCCGAGCTGACCGTCAC 60.126 66.667 0.00 0.00 0.00 3.67
33 34 1.084370 CCGAAATGTCCGAGCTGACC 61.084 60.000 0.00 0.00 34.25 4.02
34 35 0.389948 ACCGAAATGTCCGAGCTGAC 60.390 55.000 0.00 0.00 35.77 3.51
52 53 4.337060 GGTCGCCCCAAACGCAAC 62.337 66.667 0.00 0.00 0.00 4.17
98 99 3.935203 CGAGTTGCACATCCAGATTTACT 59.065 43.478 0.00 0.00 0.00 2.24
142 143 4.803426 GGGCCGAGTCACAGCGAG 62.803 72.222 0.00 0.00 0.00 5.03
144 145 4.680237 TTGGGCCGAGTCACAGCG 62.680 66.667 0.00 0.00 0.00 5.18
176 177 1.468914 GGCTCGGCCTTTTTAGTTCTG 59.531 52.381 0.00 0.00 46.69 3.02
197 198 1.133482 ACAAGCCCAAAAGTACAGCCT 60.133 47.619 0.00 0.00 0.00 4.58
198 199 1.000274 CACAAGCCCAAAAGTACAGCC 60.000 52.381 0.00 0.00 0.00 4.85
351 352 1.332375 CTCGCTGTACTCTACTCTGCC 59.668 57.143 0.00 0.00 0.00 4.85
376 377 0.389426 TAGCGAGCGGAAACCAAGTC 60.389 55.000 0.00 0.00 0.00 3.01
378 379 1.084370 CCTAGCGAGCGGAAACCAAG 61.084 60.000 0.00 0.00 0.00 3.61
442 447 4.966787 TGGCCAGGCGGTTGTTCC 62.967 66.667 0.00 0.00 33.28 3.62
477 482 3.080121 AGAAGCAGAGGGGAGCCG 61.080 66.667 0.00 0.00 0.00 5.52
742 822 4.828925 GCCTGCAGACGAGAGGCC 62.829 72.222 17.39 0.00 45.69 5.19
784 866 0.678366 GCTCTGACCTCCGAGTCTGA 60.678 60.000 8.63 8.63 40.94 3.27
785 867 1.806568 GCTCTGACCTCCGAGTCTG 59.193 63.158 0.00 0.00 37.66 3.51
786 868 1.747367 CGCTCTGACCTCCGAGTCT 60.747 63.158 0.00 0.00 37.66 3.24
787 869 0.743701 TACGCTCTGACCTCCGAGTC 60.744 60.000 0.00 0.00 37.28 3.36
788 870 0.745128 CTACGCTCTGACCTCCGAGT 60.745 60.000 0.00 0.00 0.00 4.18
789 871 2.018544 CTACGCTCTGACCTCCGAG 58.981 63.158 0.00 0.00 0.00 4.63
790 872 2.113433 GCTACGCTCTGACCTCCGA 61.113 63.158 0.00 0.00 0.00 4.55
791 873 2.409651 GCTACGCTCTGACCTCCG 59.590 66.667 0.00 0.00 0.00 4.63
792 874 2.809010 GGCTACGCTCTGACCTCC 59.191 66.667 0.00 0.00 0.00 4.30
793 875 2.409651 CGGCTACGCTCTGACCTC 59.590 66.667 0.00 0.00 0.00 3.85
909 993 0.890996 AGCCACAAAAAGGAGCTCGG 60.891 55.000 7.83 1.40 0.00 4.63
910 994 0.519077 GAGCCACAAAAAGGAGCTCG 59.481 55.000 7.83 0.00 40.43 5.03
930 1017 2.796651 GCGCTCAATTGCTCCCAG 59.203 61.111 0.00 0.00 0.00 4.45
992 1079 2.119495 GAGCTCCAAACATCCTCCCTA 58.881 52.381 0.87 0.00 0.00 3.53
1183 1319 3.458857 AGAGCCTCAATCATCTCCATGTT 59.541 43.478 0.00 0.00 0.00 2.71
1184 1320 3.047115 AGAGCCTCAATCATCTCCATGT 58.953 45.455 0.00 0.00 0.00 3.21
1201 1349 0.109039 GAGTCGTCCTCCAACAGAGC 60.109 60.000 0.00 0.00 41.74 4.09
1227 1375 2.922503 TCGGGCAGCTTGAGGTCA 60.923 61.111 0.00 0.00 0.00 4.02
1228 1376 2.125350 CTCGGGCAGCTTGAGGTC 60.125 66.667 6.55 0.00 0.00 3.85
1229 1377 4.400961 GCTCGGGCAGCTTGAGGT 62.401 66.667 0.00 0.00 45.83 3.85
1649 5011 0.398318 GAACTGGTCTTGCTGAGGGT 59.602 55.000 0.00 0.00 0.00 4.34
1690 5052 2.042230 CCGTGGGTAGTAGGGGCT 60.042 66.667 0.00 0.00 0.00 5.19
1747 5141 2.953303 GCCGTAGTAAGCGTCGCC 60.953 66.667 14.86 0.00 0.00 5.54
1748 5142 2.953303 GGCCGTAGTAAGCGTCGC 60.953 66.667 9.80 9.80 0.00 5.19
1749 5143 2.278401 GGGCCGTAGTAAGCGTCG 60.278 66.667 0.00 0.00 0.00 5.12
1750 5144 2.278401 CGGGCCGTAGTAAGCGTC 60.278 66.667 19.97 0.00 0.00 5.19
1751 5145 4.503314 GCGGGCCGTAGTAAGCGT 62.503 66.667 28.82 0.00 0.00 5.07
1775 5169 2.023882 GACCGTAGTAGGCGTCGC 59.976 66.667 9.22 9.22 33.69 5.19
1776 5170 2.711924 GGACCGTAGTAGGCGTCG 59.288 66.667 0.00 0.00 33.69 5.12
1777 5171 2.711924 CGGACCGTAGTAGGCGTC 59.288 66.667 5.48 0.00 33.69 5.19
1778 5172 3.512516 GCGGACCGTAGTAGGCGT 61.513 66.667 16.73 0.00 33.69 5.68
1779 5173 4.602696 CGCGGACCGTAGTAGGCG 62.603 72.222 16.73 4.40 40.09 5.52
1780 5174 4.919987 GCGCGGACCGTAGTAGGC 62.920 72.222 16.73 6.13 39.71 3.93
1781 5175 4.602696 CGCGCGGACCGTAGTAGG 62.603 72.222 24.84 0.00 39.71 3.18
1782 5176 4.602696 CCGCGCGGACCGTAGTAG 62.603 72.222 44.86 12.52 39.71 2.57
1796 5190 3.203546 TAGTAGGAATCGCCGCCGC 62.204 63.158 0.00 0.00 43.43 6.53
1797 5191 1.371389 GTAGTAGGAATCGCCGCCG 60.371 63.158 0.00 0.00 43.43 6.46
1798 5192 1.371389 CGTAGTAGGAATCGCCGCC 60.371 63.158 0.00 0.00 43.43 6.13
1799 5193 1.371389 CCGTAGTAGGAATCGCCGC 60.371 63.158 0.00 0.00 43.43 6.53
1800 5194 1.371389 GCCGTAGTAGGAATCGCCG 60.371 63.158 0.00 0.00 43.43 6.46
1862 5259 2.415608 GCAGAGACCACGGATCCGA 61.416 63.158 39.55 0.00 42.83 4.55
2128 5525 1.662446 GCACAATGCGCTGCACTTT 60.662 52.632 13.81 0.00 43.04 2.66
2154 5551 1.585521 GCCGATACGTGACCTGACG 60.586 63.158 0.00 0.00 45.09 4.35
2185 5582 0.106015 ACCTTGCTGCCCTCTTTGTT 60.106 50.000 0.00 0.00 0.00 2.83
2236 5633 0.109039 GACTCAAGGACCTGCGAGTC 60.109 60.000 26.74 26.74 45.32 3.36
2240 5637 1.466167 CAATTGACTCAAGGACCTGCG 59.534 52.381 0.00 0.00 0.00 5.18
2250 5647 3.497763 CCACCCCTTGTACAATTGACTCA 60.498 47.826 13.59 5.25 0.00 3.41
2356 5753 6.096141 TGAAGCATACAAACAGAAAGTTCCAA 59.904 34.615 0.00 0.00 40.26 3.53
2357 5754 5.592282 TGAAGCATACAAACAGAAAGTTCCA 59.408 36.000 0.00 0.00 40.26 3.53
2358 5755 6.072112 TGAAGCATACAAACAGAAAGTTCC 57.928 37.500 0.00 0.00 40.26 3.62
2359 5756 8.482429 CAAATGAAGCATACAAACAGAAAGTTC 58.518 33.333 0.00 0.00 40.26 3.01
2360 5757 7.042523 GCAAATGAAGCATACAAACAGAAAGTT 60.043 33.333 0.00 0.00 43.89 2.66
2361 5758 6.421801 GCAAATGAAGCATACAAACAGAAAGT 59.578 34.615 0.00 0.00 0.00 2.66
2362 5759 6.421501 TGCAAATGAAGCATACAAACAGAAAG 59.578 34.615 0.00 0.00 37.02 2.62
2363 5760 6.279123 TGCAAATGAAGCATACAAACAGAAA 58.721 32.000 0.00 0.00 37.02 2.52
2364 5761 5.840715 TGCAAATGAAGCATACAAACAGAA 58.159 33.333 0.00 0.00 37.02 3.02
2365 5762 5.450592 TGCAAATGAAGCATACAAACAGA 57.549 34.783 0.00 0.00 37.02 3.41
2385 5782 0.523072 ATCCTGAACGTGCACAATGC 59.477 50.000 18.64 3.12 45.29 3.56
2386 5783 4.083324 AGTTTATCCTGAACGTGCACAATG 60.083 41.667 18.64 2.84 32.38 2.82
2387 5784 4.072131 AGTTTATCCTGAACGTGCACAAT 58.928 39.130 18.64 4.07 32.38 2.71
2388 5785 3.472652 AGTTTATCCTGAACGTGCACAA 58.527 40.909 18.64 0.00 32.38 3.33
2389 5786 3.064207 GAGTTTATCCTGAACGTGCACA 58.936 45.455 18.64 0.00 32.38 4.57
2390 5787 3.064207 TGAGTTTATCCTGAACGTGCAC 58.936 45.455 6.82 6.82 32.38 4.57
2391 5788 3.006430 TCTGAGTTTATCCTGAACGTGCA 59.994 43.478 0.00 0.00 32.38 4.57
2392 5789 3.585862 TCTGAGTTTATCCTGAACGTGC 58.414 45.455 0.00 0.00 32.38 5.34
2393 5790 6.727824 AATTCTGAGTTTATCCTGAACGTG 57.272 37.500 0.00 0.00 32.38 4.49
2394 5791 6.149474 CCAAATTCTGAGTTTATCCTGAACGT 59.851 38.462 0.00 0.00 32.38 3.99
2395 5792 6.371548 TCCAAATTCTGAGTTTATCCTGAACG 59.628 38.462 0.00 0.00 32.38 3.95
2396 5793 7.148171 CCTCCAAATTCTGAGTTTATCCTGAAC 60.148 40.741 0.00 0.00 0.00 3.18
2397 5794 6.886459 CCTCCAAATTCTGAGTTTATCCTGAA 59.114 38.462 0.00 0.00 0.00 3.02
2398 5795 6.418101 CCTCCAAATTCTGAGTTTATCCTGA 58.582 40.000 0.00 0.00 0.00 3.86
2399 5796 5.067023 GCCTCCAAATTCTGAGTTTATCCTG 59.933 44.000 0.00 0.00 0.00 3.86
2400 5797 5.196695 GCCTCCAAATTCTGAGTTTATCCT 58.803 41.667 0.00 0.00 0.00 3.24
2401 5798 4.339530 GGCCTCCAAATTCTGAGTTTATCC 59.660 45.833 0.00 0.00 0.00 2.59
2402 5799 5.067023 CAGGCCTCCAAATTCTGAGTTTATC 59.933 44.000 0.00 0.00 0.00 1.75
2403 5800 4.952335 CAGGCCTCCAAATTCTGAGTTTAT 59.048 41.667 0.00 0.00 0.00 1.40
2404 5801 4.335416 CAGGCCTCCAAATTCTGAGTTTA 58.665 43.478 0.00 0.00 0.00 2.01
2405 5802 3.160269 CAGGCCTCCAAATTCTGAGTTT 58.840 45.455 0.00 0.00 0.00 2.66
2406 5803 2.800250 CAGGCCTCCAAATTCTGAGTT 58.200 47.619 0.00 0.00 0.00 3.01
2407 5804 1.615384 GCAGGCCTCCAAATTCTGAGT 60.615 52.381 0.00 0.00 0.00 3.41
2408 5805 1.101331 GCAGGCCTCCAAATTCTGAG 58.899 55.000 0.00 0.00 0.00 3.35
2409 5806 0.323725 GGCAGGCCTCCAAATTCTGA 60.324 55.000 0.00 0.00 0.00 3.27
2410 5807 0.324091 AGGCAGGCCTCCAAATTCTG 60.324 55.000 19.56 1.68 44.43 3.02
2411 5808 0.324091 CAGGCAGGCCTCCAAATTCT 60.324 55.000 19.56 0.00 46.28 2.40
2412 5809 1.953231 GCAGGCAGGCCTCCAAATTC 61.953 60.000 19.56 0.00 46.28 2.17
2413 5810 1.986210 GCAGGCAGGCCTCCAAATT 60.986 57.895 19.56 0.74 46.28 1.82
2414 5811 2.363406 GCAGGCAGGCCTCCAAAT 60.363 61.111 19.56 1.04 46.28 2.32
2415 5812 3.583380 AGCAGGCAGGCCTCCAAA 61.583 61.111 19.56 0.00 46.28 3.28
2416 5813 4.355720 CAGCAGGCAGGCCTCCAA 62.356 66.667 19.56 0.00 46.28 3.53
2426 5823 2.478134 CGAAACTAGATATGCAGCAGGC 59.522 50.000 0.00 0.00 45.13 4.85
2427 5824 3.982475 TCGAAACTAGATATGCAGCAGG 58.018 45.455 0.00 0.00 0.00 4.85
2428 5825 4.987285 ACATCGAAACTAGATATGCAGCAG 59.013 41.667 0.00 0.00 0.00 4.24
2429 5826 4.746611 CACATCGAAACTAGATATGCAGCA 59.253 41.667 0.00 0.00 0.00 4.41
2430 5827 4.151335 CCACATCGAAACTAGATATGCAGC 59.849 45.833 0.00 0.00 0.00 5.25
2431 5828 5.532557 TCCACATCGAAACTAGATATGCAG 58.467 41.667 0.00 0.00 0.00 4.41
2432 5829 5.529581 TCCACATCGAAACTAGATATGCA 57.470 39.130 0.00 0.00 0.00 3.96
2433 5830 5.986135 AGTTCCACATCGAAACTAGATATGC 59.014 40.000 0.00 0.00 31.68 3.14
2434 5831 8.425577 AAAGTTCCACATCGAAACTAGATATG 57.574 34.615 0.00 0.00 33.08 1.78
2435 5832 8.478877 AGAAAGTTCCACATCGAAACTAGATAT 58.521 33.333 0.00 0.00 33.08 1.63
2436 5833 7.759886 CAGAAAGTTCCACATCGAAACTAGATA 59.240 37.037 0.00 0.00 33.08 1.98
2437 5834 6.591834 CAGAAAGTTCCACATCGAAACTAGAT 59.408 38.462 0.00 0.00 33.08 1.98
2438 5835 5.926542 CAGAAAGTTCCACATCGAAACTAGA 59.073 40.000 0.00 0.00 33.08 2.43
2439 5836 5.696724 ACAGAAAGTTCCACATCGAAACTAG 59.303 40.000 0.10 0.00 33.08 2.57
2440 5837 5.607477 ACAGAAAGTTCCACATCGAAACTA 58.393 37.500 0.10 0.00 33.08 2.24
2441 5838 4.451900 ACAGAAAGTTCCACATCGAAACT 58.548 39.130 0.00 0.00 34.81 2.66
2442 5839 4.813296 ACAGAAAGTTCCACATCGAAAC 57.187 40.909 0.00 0.00 0.00 2.78
2443 5840 5.124776 ACAAACAGAAAGTTCCACATCGAAA 59.875 36.000 0.00 0.00 40.26 3.46
2444 5841 4.638421 ACAAACAGAAAGTTCCACATCGAA 59.362 37.500 0.00 0.00 40.26 3.71
2445 5842 4.196193 ACAAACAGAAAGTTCCACATCGA 58.804 39.130 0.00 0.00 40.26 3.59
2446 5843 4.552166 ACAAACAGAAAGTTCCACATCG 57.448 40.909 0.00 0.00 40.26 3.84
2447 5844 5.858581 GCATACAAACAGAAAGTTCCACATC 59.141 40.000 0.00 0.00 40.26 3.06
2448 5845 5.536161 AGCATACAAACAGAAAGTTCCACAT 59.464 36.000 0.00 0.00 40.26 3.21
2449 5846 4.887071 AGCATACAAACAGAAAGTTCCACA 59.113 37.500 0.00 0.00 40.26 4.17
2492 5889 6.095440 GCAGGCAAATTCAGAGTTTATCCTAA 59.905 38.462 9.62 0.00 0.00 2.69
2493 5890 5.590259 GCAGGCAAATTCAGAGTTTATCCTA 59.410 40.000 9.62 0.00 0.00 2.94
2494 5891 4.400567 GCAGGCAAATTCAGAGTTTATCCT 59.599 41.667 5.88 5.88 0.00 3.24
2495 5892 4.440663 GGCAGGCAAATTCAGAGTTTATCC 60.441 45.833 0.00 0.00 0.00 2.59
2496 5893 4.400567 AGGCAGGCAAATTCAGAGTTTATC 59.599 41.667 0.00 0.00 0.00 1.75
2497 5894 4.159135 CAGGCAGGCAAATTCAGAGTTTAT 59.841 41.667 0.00 0.00 0.00 1.40
2498 5895 3.507233 CAGGCAGGCAAATTCAGAGTTTA 59.493 43.478 0.00 0.00 0.00 2.01
2499 5896 2.298163 CAGGCAGGCAAATTCAGAGTTT 59.702 45.455 0.00 0.00 0.00 2.66
2500 5897 1.891150 CAGGCAGGCAAATTCAGAGTT 59.109 47.619 0.00 0.00 0.00 3.01
2501 5898 1.542492 CAGGCAGGCAAATTCAGAGT 58.458 50.000 0.00 0.00 0.00 3.24
2502 5899 0.172803 GCAGGCAGGCAAATTCAGAG 59.827 55.000 0.00 0.00 0.00 3.35
2503 5900 0.251474 AGCAGGCAGGCAAATTCAGA 60.251 50.000 0.00 0.00 35.83 3.27
2504 5901 0.108804 CAGCAGGCAGGCAAATTCAG 60.109 55.000 0.00 0.00 35.83 3.02
2505 5902 1.969085 CAGCAGGCAGGCAAATTCA 59.031 52.632 0.00 0.00 35.83 2.57
2506 5903 1.447314 GCAGCAGGCAGGCAAATTC 60.447 57.895 0.00 0.00 43.97 2.17
2507 5904 2.660802 GCAGCAGGCAGGCAAATT 59.339 55.556 0.00 0.00 43.97 1.82
2516 5913 3.879295 TCAAAACTAGATATGCAGCAGGC 59.121 43.478 0.00 0.00 45.13 4.85
2517 5914 6.630444 AATCAAAACTAGATATGCAGCAGG 57.370 37.500 0.00 0.00 0.00 4.85
2518 5915 6.916387 CCAAATCAAAACTAGATATGCAGCAG 59.084 38.462 0.00 0.00 0.00 4.24
2519 5916 6.602803 TCCAAATCAAAACTAGATATGCAGCA 59.397 34.615 0.00 0.00 0.00 4.41
2520 5917 7.031226 TCCAAATCAAAACTAGATATGCAGC 57.969 36.000 0.00 0.00 0.00 5.25
2521 5918 8.680903 AGTTCCAAATCAAAACTAGATATGCAG 58.319 33.333 0.00 0.00 31.68 4.41
2522 5919 8.579850 AGTTCCAAATCAAAACTAGATATGCA 57.420 30.769 0.00 0.00 31.68 3.96
2523 5920 8.897752 AGAGTTCCAAATCAAAACTAGATATGC 58.102 33.333 0.00 0.00 33.54 3.14
2527 5924 9.136323 ACAAAGAGTTCCAAATCAAAACTAGAT 57.864 29.630 0.00 0.00 33.54 1.98
2528 5925 8.519799 ACAAAGAGTTCCAAATCAAAACTAGA 57.480 30.769 0.00 0.00 33.54 2.43
2529 5926 9.586435 AAACAAAGAGTTCCAAATCAAAACTAG 57.414 29.630 0.00 0.00 40.26 2.57
2530 5927 9.364989 CAAACAAAGAGTTCCAAATCAAAACTA 57.635 29.630 0.00 0.00 40.26 2.24
2531 5928 7.877612 ACAAACAAAGAGTTCCAAATCAAAACT 59.122 29.630 0.00 0.00 40.26 2.66
2532 5929 7.956943 CACAAACAAAGAGTTCCAAATCAAAAC 59.043 33.333 0.00 0.00 40.26 2.43
2533 5930 7.659390 ACACAAACAAAGAGTTCCAAATCAAAA 59.341 29.630 0.00 0.00 40.26 2.44
2534 5931 7.158021 ACACAAACAAAGAGTTCCAAATCAAA 58.842 30.769 0.00 0.00 40.26 2.69
2535 5932 6.696411 ACACAAACAAAGAGTTCCAAATCAA 58.304 32.000 0.00 0.00 40.26 2.57
2536 5933 6.279513 ACACAAACAAAGAGTTCCAAATCA 57.720 33.333 0.00 0.00 40.26 2.57
2537 5934 8.871686 ATTACACAAACAAAGAGTTCCAAATC 57.128 30.769 0.00 0.00 40.26 2.17
2551 5948 8.768955 GCACAATGGAAATTAATTACACAAACA 58.231 29.630 0.01 0.00 33.69 2.83
2552 5949 8.768955 TGCACAATGGAAATTAATTACACAAAC 58.231 29.630 0.01 0.00 33.69 2.93
2553 5950 8.893219 TGCACAATGGAAATTAATTACACAAA 57.107 26.923 0.01 0.00 33.69 2.83
2554 5951 8.933807 CATGCACAATGGAAATTAATTACACAA 58.066 29.630 0.01 0.00 33.69 3.33
2555 5952 8.093307 ACATGCACAATGGAAATTAATTACACA 58.907 29.630 0.01 1.83 40.94 3.72
2556 5953 8.477984 ACATGCACAATGGAAATTAATTACAC 57.522 30.769 0.01 0.00 40.94 2.90
2557 5954 9.149225 GAACATGCACAATGGAAATTAATTACA 57.851 29.630 0.01 4.66 40.94 2.41
2558 5955 9.149225 TGAACATGCACAATGGAAATTAATTAC 57.851 29.630 0.01 0.00 40.94 1.89
2559 5956 9.368674 CTGAACATGCACAATGGAAATTAATTA 57.631 29.630 0.01 0.00 40.94 1.40
2560 5957 7.334921 CCTGAACATGCACAATGGAAATTAATT 59.665 33.333 0.00 0.00 40.94 1.40
2561 5958 6.819649 CCTGAACATGCACAATGGAAATTAAT 59.180 34.615 0.00 0.00 40.94 1.40
2562 5959 6.014755 TCCTGAACATGCACAATGGAAATTAA 60.015 34.615 0.00 0.00 40.94 1.40
2563 5960 5.479724 TCCTGAACATGCACAATGGAAATTA 59.520 36.000 0.00 0.00 40.94 1.40
2564 5961 4.283978 TCCTGAACATGCACAATGGAAATT 59.716 37.500 0.00 0.00 40.94 1.82
2565 5962 3.833650 TCCTGAACATGCACAATGGAAAT 59.166 39.130 0.00 0.00 40.94 2.17
2566 5963 3.229293 TCCTGAACATGCACAATGGAAA 58.771 40.909 0.00 0.00 40.94 3.13
2567 5964 2.874014 TCCTGAACATGCACAATGGAA 58.126 42.857 0.00 0.00 40.94 3.53
2568 5965 2.583024 TCCTGAACATGCACAATGGA 57.417 45.000 0.00 0.00 40.94 3.41
2569 5966 4.987408 TTATCCTGAACATGCACAATGG 57.013 40.909 0.00 0.00 40.94 3.16
2570 5967 5.957798 AGTTTATCCTGAACATGCACAATG 58.042 37.500 0.00 0.00 42.48 2.82
2571 5968 5.948162 AGAGTTTATCCTGAACATGCACAAT 59.052 36.000 0.00 0.00 0.00 2.71
2572 5969 5.181811 CAGAGTTTATCCTGAACATGCACAA 59.818 40.000 0.00 0.00 32.37 3.33
2573 5970 4.696877 CAGAGTTTATCCTGAACATGCACA 59.303 41.667 0.00 0.00 32.37 4.57
2574 5971 4.937620 TCAGAGTTTATCCTGAACATGCAC 59.062 41.667 0.00 0.00 36.58 4.57
2575 5972 5.164620 TCAGAGTTTATCCTGAACATGCA 57.835 39.130 0.00 0.00 36.58 3.96
2582 5979 5.649395 CAGGCAAATTCAGAGTTTATCCTGA 59.351 40.000 21.97 0.00 38.92 3.86
2619 6016 8.926715 AACAAAGAGTTCCAAATCAAAACTAC 57.073 30.769 0.00 0.00 34.74 2.73
2630 6027 3.509575 AGCACACAAACAAAGAGTTCCAA 59.490 39.130 0.00 0.00 40.26 3.53
2661 6058 5.948162 AGAGTTTATCCTGAACATGCACAAT 59.052 36.000 0.00 0.00 0.00 2.71
2751 6148 5.948162 AGAGTTTATCCTGAACATGCACAAT 59.052 36.000 0.00 0.00 0.00 2.71
2811 6208 3.088532 AGCACACAAACAAAGAGTTCCA 58.911 40.909 0.00 0.00 40.26 3.53
2865 6262 0.599558 GCAGCAGTCAGGCAAATTCA 59.400 50.000 0.00 0.00 35.83 2.57
2877 6274 6.764308 AATCAAAACTACATATGCAGCAGT 57.236 33.333 0.00 0.00 0.00 4.40
2883 6280 8.462016 AGAGTTCCAAATCAAAACTACATATGC 58.538 33.333 1.58 0.00 33.54 3.14
2908 6305 6.900568 TCCAAATTAAGCACACAAACAAAG 57.099 33.333 0.00 0.00 0.00 2.77
2910 6307 6.820656 ACAATCCAAATTAAGCACACAAACAA 59.179 30.769 0.00 0.00 0.00 2.83
2914 6311 4.749099 GCACAATCCAAATTAAGCACACAA 59.251 37.500 0.00 0.00 0.00 3.33
2927 6324 2.874014 TCCTGAACATGCACAATCCAA 58.126 42.857 0.00 0.00 0.00 3.53
2928 6325 2.583024 TCCTGAACATGCACAATCCA 57.417 45.000 0.00 0.00 0.00 3.41
2929 6326 5.126061 AGTTTATCCTGAACATGCACAATCC 59.874 40.000 0.00 0.00 0.00 3.01
2930 6327 6.094603 AGAGTTTATCCTGAACATGCACAATC 59.905 38.462 0.00 0.00 0.00 2.67
2931 6328 5.948162 AGAGTTTATCCTGAACATGCACAAT 59.052 36.000 0.00 0.00 0.00 2.71
2932 6329 5.181811 CAGAGTTTATCCTGAACATGCACAA 59.818 40.000 0.00 0.00 32.37 3.33
2933 6330 4.696877 CAGAGTTTATCCTGAACATGCACA 59.303 41.667 0.00 0.00 32.37 4.57
2934 6331 4.937620 TCAGAGTTTATCCTGAACATGCAC 59.062 41.667 0.00 0.00 36.58 4.57
2935 6332 5.164620 TCAGAGTTTATCCTGAACATGCA 57.835 39.130 0.00 0.00 36.58 3.96
2942 6339 5.649395 CAGGCAAATTCAGAGTTTATCCTGA 59.351 40.000 21.97 0.00 38.92 3.86
2943 6340 5.649395 TCAGGCAAATTCAGAGTTTATCCTG 59.351 40.000 21.18 21.18 38.49 3.86
2944 6341 5.649831 GTCAGGCAAATTCAGAGTTTATCCT 59.350 40.000 5.88 5.88 0.00 3.24
2945 6342 5.649831 AGTCAGGCAAATTCAGAGTTTATCC 59.350 40.000 0.00 0.00 0.00 2.59
2946 6343 6.549952 CAGTCAGGCAAATTCAGAGTTTATC 58.450 40.000 0.00 0.00 0.00 1.75
2947 6344 5.105997 GCAGTCAGGCAAATTCAGAGTTTAT 60.106 40.000 0.00 0.00 0.00 1.40
2948 6345 4.216257 GCAGTCAGGCAAATTCAGAGTTTA 59.784 41.667 0.00 0.00 0.00 2.01
2949 6346 3.005155 GCAGTCAGGCAAATTCAGAGTTT 59.995 43.478 0.00 0.00 0.00 2.66
2950 6347 2.555757 GCAGTCAGGCAAATTCAGAGTT 59.444 45.455 0.00 0.00 0.00 3.01
2951 6348 2.157738 GCAGTCAGGCAAATTCAGAGT 58.842 47.619 0.00 0.00 0.00 3.24
2952 6349 2.161808 CAGCAGTCAGGCAAATTCAGAG 59.838 50.000 0.00 0.00 35.83 3.35
2953 6350 2.156917 CAGCAGTCAGGCAAATTCAGA 58.843 47.619 0.00 0.00 35.83 3.27
2954 6351 1.402456 GCAGCAGTCAGGCAAATTCAG 60.402 52.381 0.00 0.00 35.83 3.02
2955 6352 0.599558 GCAGCAGTCAGGCAAATTCA 59.400 50.000 0.00 0.00 35.83 2.57
2956 6353 0.599558 TGCAGCAGTCAGGCAAATTC 59.400 50.000 0.00 0.00 34.05 2.17
2957 6354 1.263356 ATGCAGCAGTCAGGCAAATT 58.737 45.000 0.00 0.00 41.43 1.82
2958 6355 2.133281 TATGCAGCAGTCAGGCAAAT 57.867 45.000 0.00 0.00 41.43 2.32
2959 6356 1.746787 CATATGCAGCAGTCAGGCAAA 59.253 47.619 0.00 0.00 41.43 3.68
2960 6357 1.340308 ACATATGCAGCAGTCAGGCAA 60.340 47.619 0.00 0.00 41.43 4.52
2961 6358 0.253894 ACATATGCAGCAGTCAGGCA 59.746 50.000 0.00 0.00 42.43 4.75
2962 6359 2.141517 CTACATATGCAGCAGTCAGGC 58.858 52.381 0.00 0.00 0.00 4.85
2963 6360 3.465742 ACTACATATGCAGCAGTCAGG 57.534 47.619 0.00 0.00 0.00 3.86
2964 6361 5.352293 TCAAAACTACATATGCAGCAGTCAG 59.648 40.000 0.00 0.00 0.00 3.51
2965 6362 5.244755 TCAAAACTACATATGCAGCAGTCA 58.755 37.500 0.00 0.00 0.00 3.41
2966 6363 5.801350 TCAAAACTACATATGCAGCAGTC 57.199 39.130 0.00 0.00 0.00 3.51
2967 6364 6.764308 AATCAAAACTACATATGCAGCAGT 57.236 33.333 0.00 0.00 0.00 4.40
2968 6365 6.474427 CCAAATCAAAACTACATATGCAGCAG 59.526 38.462 0.00 0.00 0.00 4.24
2969 6366 6.152492 TCCAAATCAAAACTACATATGCAGCA 59.848 34.615 1.58 0.00 0.00 4.41
2970 6367 6.563422 TCCAAATCAAAACTACATATGCAGC 58.437 36.000 1.58 0.00 0.00 5.25
2971 6368 8.246180 AGTTCCAAATCAAAACTACATATGCAG 58.754 33.333 1.58 1.32 31.68 4.41
2972 6369 8.121305 AGTTCCAAATCAAAACTACATATGCA 57.879 30.769 1.58 0.00 31.68 3.96
2973 6370 8.462016 AGAGTTCCAAATCAAAACTACATATGC 58.538 33.333 1.58 0.00 33.54 3.14
2977 6374 8.695456 ACAAAGAGTTCCAAATCAAAACTACAT 58.305 29.630 0.00 0.00 33.54 2.29
2978 6375 8.062065 ACAAAGAGTTCCAAATCAAAACTACA 57.938 30.769 0.00 0.00 33.54 2.74
2979 6376 8.926715 AACAAAGAGTTCCAAATCAAAACTAC 57.073 30.769 0.00 0.00 34.74 2.73
2980 6377 9.364989 CAAACAAAGAGTTCCAAATCAAAACTA 57.635 29.630 0.00 0.00 40.26 2.24
2981 6378 7.877612 ACAAACAAAGAGTTCCAAATCAAAACT 59.122 29.630 0.00 0.00 40.26 2.66
2982 6379 7.956943 CACAAACAAAGAGTTCCAAATCAAAAC 59.043 33.333 0.00 0.00 40.26 2.43
2983 6380 7.659390 ACACAAACAAAGAGTTCCAAATCAAAA 59.341 29.630 0.00 0.00 40.26 2.44
2984 6381 7.117523 CACACAAACAAAGAGTTCCAAATCAAA 59.882 33.333 0.00 0.00 40.26 2.69
2985 6382 6.589523 CACACAAACAAAGAGTTCCAAATCAA 59.410 34.615 0.00 0.00 40.26 2.57
2986 6383 6.098679 CACACAAACAAAGAGTTCCAAATCA 58.901 36.000 0.00 0.00 40.26 2.57
2987 6384 5.005682 GCACACAAACAAAGAGTTCCAAATC 59.994 40.000 0.00 0.00 40.26 2.17
2988 6385 4.869861 GCACACAAACAAAGAGTTCCAAAT 59.130 37.500 0.00 0.00 40.26 2.32
2989 6386 4.021544 AGCACACAAACAAAGAGTTCCAAA 60.022 37.500 0.00 0.00 40.26 3.28
2990 6387 3.509575 AGCACACAAACAAAGAGTTCCAA 59.490 39.130 0.00 0.00 40.26 3.53
2991 6388 3.088532 AGCACACAAACAAAGAGTTCCA 58.911 40.909 0.00 0.00 40.26 3.53
2992 6389 3.782889 AGCACACAAACAAAGAGTTCC 57.217 42.857 0.00 0.00 40.26 3.62
2993 6390 7.755582 AATTAAGCACACAAACAAAGAGTTC 57.244 32.000 0.00 0.00 40.26 3.01
2994 6391 7.064490 CCAAATTAAGCACACAAACAAAGAGTT 59.936 33.333 0.00 0.00 43.89 3.01
2995 6392 6.534793 CCAAATTAAGCACACAAACAAAGAGT 59.465 34.615 0.00 0.00 0.00 3.24
2996 6393 6.756074 TCCAAATTAAGCACACAAACAAAGAG 59.244 34.615 0.00 0.00 0.00 2.85
2997 6394 6.634805 TCCAAATTAAGCACACAAACAAAGA 58.365 32.000 0.00 0.00 0.00 2.52
2998 6395 6.900568 TCCAAATTAAGCACACAAACAAAG 57.099 33.333 0.00 0.00 0.00 2.77
2999 6396 7.335422 ACAATCCAAATTAAGCACACAAACAAA 59.665 29.630 0.00 0.00 0.00 2.83
3000 6397 6.820656 ACAATCCAAATTAAGCACACAAACAA 59.179 30.769 0.00 0.00 0.00 2.83
3001 6398 6.257411 CACAATCCAAATTAAGCACACAAACA 59.743 34.615 0.00 0.00 0.00 2.83
3002 6399 6.648502 CACAATCCAAATTAAGCACACAAAC 58.351 36.000 0.00 0.00 0.00 2.93
3003 6400 5.236047 GCACAATCCAAATTAAGCACACAAA 59.764 36.000 0.00 0.00 0.00 2.83
3004 6401 4.749099 GCACAATCCAAATTAAGCACACAA 59.251 37.500 0.00 0.00 0.00 3.33
3005 6402 4.202192 TGCACAATCCAAATTAAGCACACA 60.202 37.500 0.00 0.00 32.26 3.72
3006 6403 4.305769 TGCACAATCCAAATTAAGCACAC 58.694 39.130 0.00 0.00 32.26 3.82
3007 6404 4.597404 TGCACAATCCAAATTAAGCACA 57.403 36.364 0.00 0.00 32.26 4.57
3008 6405 4.931002 ACATGCACAATCCAAATTAAGCAC 59.069 37.500 0.00 0.00 36.95 4.40
3048 6445 1.079819 CGCTGTGATCACCGACCTT 60.080 57.895 22.85 0.00 0.00 3.50
3072 6469 6.073548 GCATCTTTATCAGTAAGGGTTGATCG 60.074 42.308 0.00 0.00 35.72 3.69
3075 6472 6.115446 CAGCATCTTTATCAGTAAGGGTTGA 58.885 40.000 0.00 0.00 0.00 3.18
3122 6519 4.479993 GGGCGCTGTCCATGAGCT 62.480 66.667 7.64 0.00 34.03 4.09
3182 6579 4.000988 ACTGCAACTTAAACATACCTCGG 58.999 43.478 0.00 0.00 0.00 4.63
3233 6634 1.202568 TGGCCGTGCTCTGATCTATTG 60.203 52.381 0.00 0.00 0.00 1.90
3322 6723 3.114809 GCAGTCATCTGAATCAGAGTCG 58.885 50.000 18.49 9.51 44.08 4.18
3354 6755 2.763933 CCATGCTCGCATAGAATCTGT 58.236 47.619 3.79 0.00 34.91 3.41
3404 6805 1.582968 CCTGACACATGCCTTGCAC 59.417 57.895 0.00 0.00 43.04 4.57
3676 7084 0.681733 TCCTGTGACAGCTTCTCCAC 59.318 55.000 7.16 0.00 0.00 4.02
3688 7096 3.884895 ACAAACAGACAATGTCCTGTGA 58.115 40.909 10.12 0.00 43.00 3.58
3726 7134 2.024176 AACACTGCATCACGGATACC 57.976 50.000 0.00 0.00 0.00 2.73
3787 7195 4.963318 TCAGTGAATCCAGAACAAGACT 57.037 40.909 0.00 0.00 0.00 3.24
3818 7226 0.635731 CGCAGAAAGTCGATCGTCAC 59.364 55.000 15.94 6.94 0.00 3.67
3819 7227 0.519961 TCGCAGAAAGTCGATCGTCA 59.480 50.000 15.94 0.00 0.00 4.35
3917 7325 1.905215 CCACACAAGATGGAGGAGAGT 59.095 52.381 0.00 0.00 39.87 3.24
4015 7434 1.648720 CACACACCTTGGCGTTCAG 59.351 57.895 0.00 0.00 0.00 3.02
4131 7550 0.034574 TGGGGATGTTGGGATTGACG 60.035 55.000 0.00 0.00 0.00 4.35
4159 7578 5.047092 CCAATCCAAGGCTGTTCTAATTGTT 60.047 40.000 0.00 0.00 0.00 2.83
4313 7732 2.012673 GATGGAGGCACACTTGATGAC 58.987 52.381 0.00 0.00 0.00 3.06
4379 7798 6.480651 TCAGTTTAGTTCAGCGTACAATTTCA 59.519 34.615 0.00 0.00 0.00 2.69
4393 7812 2.494059 TGGCTGCTGTCAGTTTAGTTC 58.506 47.619 0.93 0.00 42.29 3.01
4420 7839 1.303888 AAGTCCCTCGTACTGGCGA 60.304 57.895 0.00 0.00 39.22 5.54
4498 7917 7.236225 TGGCTTATCAGATTCTGAGGATAATGA 59.764 37.037 20.35 0.65 44.08 2.57
4510 7929 5.279384 CAATTGCACTGGCTTATCAGATTC 58.721 41.667 0.00 0.00 41.91 2.52
4591 8014 9.325198 GGTTTTGATTTTTCTTGGTAAGTGAAT 57.675 29.630 0.00 0.00 0.00 2.57
4612 8035 6.339587 TCTTCAAACTTGTTGTGAGGTTTT 57.660 33.333 0.00 0.00 30.78 2.43
4614 8037 5.975693 TTCTTCAAACTTGTTGTGAGGTT 57.024 34.783 0.00 0.00 0.00 3.50
4708 8134 1.773856 TTGGTGGCTGGGATGACGAA 61.774 55.000 0.00 0.00 0.00 3.85
4711 10538 2.024414 GTTATTGGTGGCTGGGATGAC 58.976 52.381 0.00 0.00 0.00 3.06
4798 10627 3.558418 CGTACCCACTGAAATAAATCCCG 59.442 47.826 0.00 0.00 0.00 5.14
5095 10926 5.925397 TGCTGCCAACAAAAATGTATGTTAG 59.075 36.000 0.00 0.00 37.66 2.34
5101 10932 4.333913 ACATGCTGCCAACAAAAATGTA 57.666 36.364 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.