Multiple sequence alignment - TraesCS4A01G018800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G018800 chr4A 100.000 3913 0 0 1 3913 12212010 12208098 0.000000e+00 7227.0
1 TraesCS4A01G018800 chr4A 83.519 898 137 10 928 1821 12400356 12401246 0.000000e+00 828.0
2 TraesCS4A01G018800 chr4A 81.271 897 127 26 934 1821 12163098 12162234 0.000000e+00 688.0
3 TraesCS4A01G018800 chr4A 81.119 286 47 7 2824 3106 14346924 14347205 5.090000e-54 222.0
4 TraesCS4A01G018800 chr4D 93.809 2665 100 16 874 3503 455599835 455602469 0.000000e+00 3947.0
5 TraesCS4A01G018800 chr4D 83.259 896 143 7 928 1821 455530098 455530988 0.000000e+00 817.0
6 TraesCS4A01G018800 chr4D 81.920 896 146 13 933 1821 455652459 455653345 0.000000e+00 743.0
7 TraesCS4A01G018800 chr4D 93.455 382 8 6 3543 3913 455615655 455616030 5.710000e-153 551.0
8 TraesCS4A01G018800 chr4D 83.673 294 20 10 5 297 455583176 455583442 6.490000e-63 252.0
9 TraesCS4A01G018800 chr4D 92.486 173 11 2 365 536 455583474 455583645 3.020000e-61 246.0
10 TraesCS4A01G018800 chr4D 71.552 1269 250 74 1013 2238 452557743 452556543 1.400000e-59 241.0
11 TraesCS4A01G018800 chr4D 84.545 220 34 0 1003 1222 455618665 455618884 6.580000e-53 219.0
12 TraesCS4A01G018800 chr4D 79.720 286 48 10 2824 3106 452555722 452555444 8.580000e-47 198.0
13 TraesCS4A01G018800 chr4D 77.987 318 58 11 1852 2166 455531046 455531354 5.160000e-44 189.0
14 TraesCS4A01G018800 chr4D 78.042 337 33 23 533 842 455583981 455584303 1.450000e-39 174.0
15 TraesCS4A01G018800 chr4D 97.917 48 1 0 3495 3542 455615499 455615546 2.510000e-12 84.2
16 TraesCS4A01G018800 chr4D 94.118 51 3 0 2525 2575 463465502 463465552 1.170000e-10 78.7
17 TraesCS4A01G018800 chr4D 97.674 43 1 0 3500 3542 455615548 455615590 1.510000e-09 75.0
18 TraesCS4A01G018800 chr4B 89.610 1742 99 27 1854 3538 568605426 568607142 0.000000e+00 2139.0
19 TraesCS4A01G018800 chr4B 79.551 1335 217 32 933 2235 568714549 568715859 0.000000e+00 902.0
20 TraesCS4A01G018800 chr4B 81.818 913 144 15 928 1821 568600265 568601174 0.000000e+00 747.0
21 TraesCS4A01G018800 chr4B 87.762 572 55 10 371 928 568604004 568604574 0.000000e+00 654.0
22 TraesCS4A01G018800 chr4B 79.592 294 50 8 1936 2225 569028617 569028904 6.630000e-48 202.0
23 TraesCS4A01G018800 chr4B 81.545 233 35 8 2824 3054 565741618 565741392 6.680000e-43 185.0
24 TraesCS4A01G018800 chr4B 86.188 181 13 4 3543 3713 568607208 568607386 6.680000e-43 185.0
25 TraesCS4A01G018800 chr4B 78.909 275 52 5 1967 2240 24980092 24980361 8.640000e-42 182.0
26 TraesCS4A01G018800 chr4B 80.263 228 40 3 2014 2238 565742669 565742444 2.420000e-37 167.0
27 TraesCS4A01G018800 chr4B 87.778 90 11 0 1999 2088 568635424 568635513 5.350000e-19 106.0
28 TraesCS4A01G018800 chr5B 88.770 187 21 0 1036 1222 521154649 521154463 3.040000e-56 230.0
29 TraesCS4A01G018800 chr5A 88.710 186 21 0 1037 1222 546698155 546697970 1.090000e-55 228.0
30 TraesCS4A01G018800 chr5A 93.151 73 1 4 2536 2605 490326152 490326081 1.920000e-18 104.0
31 TraesCS4A01G018800 chr5A 93.151 73 1 4 2536 2605 490416182 490416111 1.920000e-18 104.0
32 TraesCS4A01G018800 chr5D 86.559 186 25 0 1037 1222 431617926 431617741 5.130000e-49 206.0
33 TraesCS4A01G018800 chr5D 97.826 46 1 0 2533 2578 371786362 371786407 3.240000e-11 80.5
34 TraesCS4A01G018800 chr6B 89.041 73 4 4 2536 2605 529172810 529172739 1.940000e-13 87.9
35 TraesCS4A01G018800 chr3D 95.833 48 2 0 2531 2578 108916352 108916305 1.170000e-10 78.7
36 TraesCS4A01G018800 chr2B 84.615 78 6 4 2537 2609 58295612 58295536 5.420000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G018800 chr4A 12208098 12212010 3912 True 7227.00 7227 100.000000 1 3913 1 chr4A.!!$R2 3912
1 TraesCS4A01G018800 chr4A 12400356 12401246 890 False 828.00 828 83.519000 928 1821 1 chr4A.!!$F1 893
2 TraesCS4A01G018800 chr4A 12162234 12163098 864 True 688.00 688 81.271000 934 1821 1 chr4A.!!$R1 887
3 TraesCS4A01G018800 chr4D 455599835 455602469 2634 False 3947.00 3947 93.809000 874 3503 1 chr4D.!!$F1 2629
4 TraesCS4A01G018800 chr4D 455652459 455653345 886 False 743.00 743 81.920000 933 1821 1 chr4D.!!$F2 888
5 TraesCS4A01G018800 chr4D 455530098 455531354 1256 False 503.00 817 80.623000 928 2166 2 chr4D.!!$F4 1238
6 TraesCS4A01G018800 chr4D 455615499 455618884 3385 False 232.30 551 93.397750 1003 3913 4 chr4D.!!$F6 2910
7 TraesCS4A01G018800 chr4D 455583176 455584303 1127 False 224.00 252 84.733667 5 842 3 chr4D.!!$F5 837
8 TraesCS4A01G018800 chr4D 452555444 452557743 2299 True 219.50 241 75.636000 1013 3106 2 chr4D.!!$R1 2093
9 TraesCS4A01G018800 chr4B 568600265 568607386 7121 False 931.25 2139 86.344500 371 3713 4 chr4B.!!$F5 3342
10 TraesCS4A01G018800 chr4B 568714549 568715859 1310 False 902.00 902 79.551000 933 2235 1 chr4B.!!$F3 1302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 863 0.036010 CTGCACTCCCCGTGATCTTT 60.036 55.0 0.0 0.0 46.81 2.52 F
862 864 0.400213 TGCACTCCCCGTGATCTTTT 59.600 50.0 0.0 0.0 46.81 2.27 F
927 929 0.458716 GCGCTTCTCCACTCCACTAC 60.459 60.0 0.0 0.0 0.00 2.73 F
1512 3841 0.759436 AGGATTGGGGCGAGTACGAT 60.759 55.0 0.0 0.0 42.66 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 8490 0.253894 TCTATCAGGACGGACACGGA 59.746 55.0 0.00 0.00 46.48 4.69 R
1961 8535 0.455633 CTTTGGTGCGAGCTCAATGC 60.456 55.0 15.40 9.86 43.29 3.56 R
2102 8676 1.375098 GCTTGGCTCTCTGTCCATGC 61.375 60.0 3.89 3.89 43.22 4.06 R
3083 10053 0.307760 AAACTCAAGTTTCGGCGCAG 59.692 50.0 10.83 5.07 44.15 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.642540 GGACAAGAACCATTTTGATCAAACTC 59.357 38.462 20.35 11.53 0.00 3.01
85 86 2.076863 GTCCAAAAGACGACTCCCATG 58.923 52.381 0.00 0.00 35.30 3.66
86 87 1.697432 TCCAAAAGACGACTCCCATGT 59.303 47.619 0.00 0.00 0.00 3.21
87 88 2.105821 TCCAAAAGACGACTCCCATGTT 59.894 45.455 0.00 0.00 0.00 2.71
88 89 2.884639 CCAAAAGACGACTCCCATGTTT 59.115 45.455 0.00 0.00 0.00 2.83
89 90 3.304659 CCAAAAGACGACTCCCATGTTTG 60.305 47.826 0.00 0.00 0.00 2.93
90 91 1.523758 AAGACGACTCCCATGTTTGC 58.476 50.000 0.00 0.00 0.00 3.68
91 92 0.687354 AGACGACTCCCATGTTTGCT 59.313 50.000 0.00 0.00 0.00 3.91
92 93 1.899814 AGACGACTCCCATGTTTGCTA 59.100 47.619 0.00 0.00 0.00 3.49
93 94 2.093973 AGACGACTCCCATGTTTGCTAG 60.094 50.000 0.00 0.00 0.00 3.42
95 96 1.066143 CGACTCCCATGTTTGCTAGGT 60.066 52.381 0.00 0.00 0.00 3.08
96 97 2.167693 CGACTCCCATGTTTGCTAGGTA 59.832 50.000 0.00 0.00 0.00 3.08
97 98 3.181465 CGACTCCCATGTTTGCTAGGTAT 60.181 47.826 0.00 0.00 0.00 2.73
98 99 4.683400 CGACTCCCATGTTTGCTAGGTATT 60.683 45.833 0.00 0.00 0.00 1.89
100 101 6.321821 ACTCCCATGTTTGCTAGGTATTAA 57.678 37.500 0.00 0.00 0.00 1.40
101 102 6.727394 ACTCCCATGTTTGCTAGGTATTAAA 58.273 36.000 0.00 0.00 0.00 1.52
102 103 7.354312 ACTCCCATGTTTGCTAGGTATTAAAT 58.646 34.615 0.00 0.00 0.00 1.40
103 104 7.285401 ACTCCCATGTTTGCTAGGTATTAAATG 59.715 37.037 0.00 0.00 0.00 2.32
104 105 7.122715 TCCCATGTTTGCTAGGTATTAAATGT 58.877 34.615 0.00 0.00 0.00 2.71
159 160 3.775316 GGAGAGTGAACCCCTAGATTGAA 59.225 47.826 0.00 0.00 0.00 2.69
164 165 5.264395 AGTGAACCCCTAGATTGAAATTGG 58.736 41.667 0.00 0.00 0.00 3.16
244 245 9.582431 TTAATTTCTACCTCTGTTATTGTCTCG 57.418 33.333 0.00 0.00 0.00 4.04
251 252 4.747108 CCTCTGTTATTGTCTCGCCATTAG 59.253 45.833 0.00 0.00 0.00 1.73
261 262 4.819630 TGTCTCGCCATTAGTTTTTGTTCT 59.180 37.500 0.00 0.00 0.00 3.01
294 295 2.380064 TGTCATTTTCCTTGTGCCCT 57.620 45.000 0.00 0.00 0.00 5.19
295 296 2.238521 TGTCATTTTCCTTGTGCCCTC 58.761 47.619 0.00 0.00 0.00 4.30
296 297 2.158475 TGTCATTTTCCTTGTGCCCTCT 60.158 45.455 0.00 0.00 0.00 3.69
297 298 2.489722 GTCATTTTCCTTGTGCCCTCTC 59.510 50.000 0.00 0.00 0.00 3.20
298 299 1.821136 CATTTTCCTTGTGCCCTCTCC 59.179 52.381 0.00 0.00 0.00 3.71
299 300 1.149101 TTTTCCTTGTGCCCTCTCCT 58.851 50.000 0.00 0.00 0.00 3.69
300 301 2.038863 TTTCCTTGTGCCCTCTCCTA 57.961 50.000 0.00 0.00 0.00 2.94
302 303 0.970937 TCCTTGTGCCCTCTCCTACG 60.971 60.000 0.00 0.00 0.00 3.51
303 304 1.258445 CCTTGTGCCCTCTCCTACGT 61.258 60.000 0.00 0.00 0.00 3.57
304 305 0.173708 CTTGTGCCCTCTCCTACGTC 59.826 60.000 0.00 0.00 0.00 4.34
305 306 1.592400 TTGTGCCCTCTCCTACGTCG 61.592 60.000 0.00 0.00 0.00 5.12
308 309 1.101635 TGCCCTCTCCTACGTCGATG 61.102 60.000 2.26 2.26 0.00 3.84
310 311 1.898902 CCCTCTCCTACGTCGATGAT 58.101 55.000 12.58 0.00 0.00 2.45
311 312 1.807742 CCCTCTCCTACGTCGATGATC 59.192 57.143 12.58 0.00 0.00 2.92
312 313 1.461512 CCTCTCCTACGTCGATGATCG 59.538 57.143 12.58 8.83 42.10 3.69
320 321 4.998294 TCGATGATCGAGCGTCAC 57.002 55.556 21.70 0.00 44.82 3.67
323 324 1.065551 TCGATGATCGAGCGTCACAAT 59.934 47.619 21.70 0.00 44.82 2.71
325 326 1.789464 GATGATCGAGCGTCACAATCC 59.211 52.381 17.67 0.00 0.00 3.01
326 327 0.817654 TGATCGAGCGTCACAATCCT 59.182 50.000 0.00 0.00 0.00 3.24
327 328 1.204704 TGATCGAGCGTCACAATCCTT 59.795 47.619 0.00 0.00 0.00 3.36
329 330 0.601057 TCGAGCGTCACAATCCTTGA 59.399 50.000 0.00 0.00 0.00 3.02
330 331 0.716108 CGAGCGTCACAATCCTTGAC 59.284 55.000 0.00 0.00 40.10 3.18
332 333 2.415491 CGAGCGTCACAATCCTTGACTA 60.415 50.000 1.36 0.00 41.13 2.59
334 335 4.184629 GAGCGTCACAATCCTTGACTAAT 58.815 43.478 1.36 0.00 41.13 1.73
335 336 4.184629 AGCGTCACAATCCTTGACTAATC 58.815 43.478 1.36 0.00 41.13 1.75
337 338 4.572389 GCGTCACAATCCTTGACTAATCAT 59.428 41.667 1.36 0.00 41.13 2.45
339 340 6.403636 GCGTCACAATCCTTGACTAATCATTT 60.404 38.462 1.36 0.00 41.13 2.32
340 341 7.530010 CGTCACAATCCTTGACTAATCATTTT 58.470 34.615 1.36 0.00 41.13 1.82
390 391 3.378112 CAGCCATTGTCGTGGTTTCATAT 59.622 43.478 0.00 0.00 41.47 1.78
403 404 5.909054 GTGGTTTCATATACGCATGTCATTG 59.091 40.000 0.00 0.00 0.00 2.82
427 428 3.281727 AGCCATACGTTCACCATCATT 57.718 42.857 0.00 0.00 0.00 2.57
440 441 8.673711 CGTTCACCATCATTAGATAAGGAAAAA 58.326 33.333 0.00 0.00 31.88 1.94
485 487 1.579964 TTTCGAGCTGTCCGCGACTA 61.580 55.000 8.23 0.00 45.33 2.59
536 538 3.763360 CACTCCATTAACAAGGGCAATGA 59.237 43.478 0.00 0.00 32.54 2.57
538 540 4.220602 ACTCCATTAACAAGGGCAATGAAC 59.779 41.667 0.00 0.00 32.54 3.18
540 542 3.192422 CCATTAACAAGGGCAATGAACGA 59.808 43.478 0.00 0.00 32.54 3.85
544 546 1.541147 ACAAGGGCAATGAACGATGTG 59.459 47.619 0.00 0.00 0.00 3.21
545 547 1.541147 CAAGGGCAATGAACGATGTGT 59.459 47.619 0.00 0.00 0.00 3.72
546 548 1.453155 AGGGCAATGAACGATGTGTC 58.547 50.000 0.00 0.00 0.00 3.67
547 549 1.164411 GGGCAATGAACGATGTGTCA 58.836 50.000 0.00 0.00 0.00 3.58
549 551 2.478370 GGGCAATGAACGATGTGTCATG 60.478 50.000 0.00 0.00 0.00 3.07
551 553 3.165890 GCAATGAACGATGTGTCATGTG 58.834 45.455 0.00 0.00 0.00 3.21
553 555 4.153256 CAATGAACGATGTGTCATGTGTG 58.847 43.478 0.00 0.00 0.00 3.82
554 556 3.104843 TGAACGATGTGTCATGTGTGA 57.895 42.857 0.00 0.00 0.00 3.58
556 558 4.815269 TGAACGATGTGTCATGTGTGATA 58.185 39.130 0.00 0.00 36.60 2.15
557 559 5.233988 TGAACGATGTGTCATGTGTGATAA 58.766 37.500 0.00 0.00 36.60 1.75
559 561 7.038659 TGAACGATGTGTCATGTGTGATAATA 58.961 34.615 0.00 0.00 36.60 0.98
562 564 9.541143 AACGATGTGTCATGTGTGATAATAATA 57.459 29.630 0.00 0.00 36.60 0.98
563 565 8.978539 ACGATGTGTCATGTGTGATAATAATAC 58.021 33.333 0.00 0.00 36.60 1.89
564 566 8.435430 CGATGTGTCATGTGTGATAATAATACC 58.565 37.037 0.00 0.00 36.60 2.73
565 567 7.707774 TGTGTCATGTGTGATAATAATACCG 57.292 36.000 0.00 0.00 36.60 4.02
566 568 6.201997 TGTGTCATGTGTGATAATAATACCGC 59.798 38.462 0.00 0.00 36.60 5.68
567 569 6.201997 GTGTCATGTGTGATAATAATACCGCA 59.798 38.462 0.00 0.00 36.60 5.69
568 570 6.763610 TGTCATGTGTGATAATAATACCGCAA 59.236 34.615 0.00 0.00 36.60 4.85
570 572 8.126074 GTCATGTGTGATAATAATACCGCAAAA 58.874 33.333 0.00 0.00 36.60 2.44
571 573 8.845227 TCATGTGTGATAATAATACCGCAAAAT 58.155 29.630 0.00 0.00 0.00 1.82
572 574 9.117145 CATGTGTGATAATAATACCGCAAAATC 57.883 33.333 0.00 0.00 0.00 2.17
573 575 8.214721 TGTGTGATAATAATACCGCAAAATCA 57.785 30.769 0.00 0.00 0.00 2.57
574 576 8.678199 TGTGTGATAATAATACCGCAAAATCAA 58.322 29.630 0.00 0.00 0.00 2.57
575 577 9.169468 GTGTGATAATAATACCGCAAAATCAAG 57.831 33.333 0.00 0.00 0.00 3.02
577 579 9.730420 GTGATAATAATACCGCAAAATCAAGTT 57.270 29.630 0.00 0.00 0.00 2.66
611 613 8.902540 AATTAATTTTCTTTGTGGGGTTTCTC 57.097 30.769 0.00 0.00 0.00 2.87
613 615 6.499106 AATTTTCTTTGTGGGGTTTCTCAT 57.501 33.333 0.00 0.00 0.00 2.90
614 616 7.610580 AATTTTCTTTGTGGGGTTTCTCATA 57.389 32.000 0.00 0.00 0.00 2.15
616 618 4.993705 TCTTTGTGGGGTTTCTCATAGT 57.006 40.909 0.00 0.00 0.00 2.12
618 620 5.701224 TCTTTGTGGGGTTTCTCATAGTTT 58.299 37.500 0.00 0.00 0.00 2.66
619 621 6.843752 TCTTTGTGGGGTTTCTCATAGTTTA 58.156 36.000 0.00 0.00 0.00 2.01
621 623 7.947890 TCTTTGTGGGGTTTCTCATAGTTTATT 59.052 33.333 0.00 0.00 0.00 1.40
623 625 9.589461 TTTGTGGGGTTTCTCATAGTTTATTAA 57.411 29.630 0.00 0.00 0.00 1.40
624 626 9.589461 TTGTGGGGTTTCTCATAGTTTATTAAA 57.411 29.630 0.00 0.00 0.00 1.52
626 628 8.464404 GTGGGGTTTCTCATAGTTTATTAAACC 58.536 37.037 14.24 0.00 42.34 3.27
629 631 8.393366 GGGTTTCTCATAGTTTATTAAACCGTC 58.607 37.037 14.24 0.00 43.30 4.79
630 632 8.938906 GGTTTCTCATAGTTTATTAAACCGTCA 58.061 33.333 14.24 0.72 42.34 4.35
641 643 8.580431 GTTTATTAAACCGTCATATTGTGTTGC 58.420 33.333 7.90 0.00 35.35 4.17
642 644 3.569250 AAACCGTCATATTGTGTTGCC 57.431 42.857 0.00 0.00 0.00 4.52
645 647 2.290008 ACCGTCATATTGTGTTGCCTCA 60.290 45.455 0.00 0.00 0.00 3.86
646 648 2.945008 CCGTCATATTGTGTTGCCTCAT 59.055 45.455 0.00 0.00 0.00 2.90
647 649 4.126437 CCGTCATATTGTGTTGCCTCATA 58.874 43.478 0.00 0.00 0.00 2.15
648 650 4.212004 CCGTCATATTGTGTTGCCTCATAG 59.788 45.833 0.00 0.00 0.00 2.23
649 651 4.811024 CGTCATATTGTGTTGCCTCATAGT 59.189 41.667 0.00 0.00 0.00 2.12
651 653 6.478673 CGTCATATTGTGTTGCCTCATAGTTA 59.521 38.462 0.00 0.00 0.00 2.24
652 654 7.171508 CGTCATATTGTGTTGCCTCATAGTTAT 59.828 37.037 0.00 0.00 0.00 1.89
654 656 8.210265 TCATATTGTGTTGCCTCATAGTTATCA 58.790 33.333 0.00 0.00 0.00 2.15
655 657 6.683974 ATTGTGTTGCCTCATAGTTATCAC 57.316 37.500 0.00 0.00 0.00 3.06
656 658 5.420725 TGTGTTGCCTCATAGTTATCACT 57.579 39.130 0.00 0.00 36.99 3.41
658 660 5.046663 TGTGTTGCCTCATAGTTATCACTGA 60.047 40.000 0.00 0.00 34.06 3.41
659 661 5.874810 GTGTTGCCTCATAGTTATCACTGAA 59.125 40.000 0.00 0.00 34.06 3.02
661 663 6.070824 TGTTGCCTCATAGTTATCACTGAAGA 60.071 38.462 0.00 0.00 34.06 2.87
663 665 6.946340 TGCCTCATAGTTATCACTGAAGAAA 58.054 36.000 0.00 0.00 34.06 2.52
664 666 7.394016 TGCCTCATAGTTATCACTGAAGAAAA 58.606 34.615 0.00 0.00 34.06 2.29
665 667 7.550551 TGCCTCATAGTTATCACTGAAGAAAAG 59.449 37.037 0.00 0.00 34.06 2.27
667 669 9.658799 CCTCATAGTTATCACTGAAGAAAAGAA 57.341 33.333 0.00 0.00 34.06 2.52
749 751 3.610114 GCATTTGCTTCTTTTCGAGAGCA 60.610 43.478 0.00 5.71 37.02 4.26
751 753 3.885484 TTGCTTCTTTTCGAGAGCAAG 57.115 42.857 14.13 9.87 40.41 4.01
753 755 3.062763 TGCTTCTTTTCGAGAGCAAGAG 58.937 45.455 6.93 1.57 36.36 2.85
771 773 2.417936 GCAGTAGCCTAGCGGTCC 59.582 66.667 0.00 0.00 33.58 4.46
772 774 2.423898 GCAGTAGCCTAGCGGTCCA 61.424 63.158 0.00 0.00 33.58 4.02
773 775 1.736586 CAGTAGCCTAGCGGTCCAG 59.263 63.158 0.00 0.00 0.00 3.86
774 776 2.128507 AGTAGCCTAGCGGTCCAGC 61.129 63.158 0.00 0.00 37.41 4.85
775 777 2.838225 TAGCCTAGCGGTCCAGCC 60.838 66.667 0.00 0.00 38.01 4.85
778 780 3.164269 CCTAGCGGTCCAGCCCAT 61.164 66.667 0.00 0.00 38.01 4.00
780 782 1.224592 CTAGCGGTCCAGCCCATTT 59.775 57.895 0.00 0.00 38.01 2.32
781 783 0.815615 CTAGCGGTCCAGCCCATTTC 60.816 60.000 0.00 0.00 38.01 2.17
783 785 2.115291 GCGGTCCAGCCCATTTCTC 61.115 63.158 0.00 0.00 0.00 2.87
786 788 1.396653 GGTCCAGCCCATTTCTCATG 58.603 55.000 0.00 0.00 0.00 3.07
787 789 1.341383 GGTCCAGCCCATTTCTCATGT 60.341 52.381 0.00 0.00 0.00 3.21
788 790 1.747355 GTCCAGCCCATTTCTCATGTG 59.253 52.381 0.00 0.00 0.00 3.21
789 791 1.355381 TCCAGCCCATTTCTCATGTGT 59.645 47.619 0.00 0.00 0.00 3.72
790 792 2.575735 TCCAGCCCATTTCTCATGTGTA 59.424 45.455 0.00 0.00 0.00 2.90
792 794 3.317149 CCAGCCCATTTCTCATGTGTATG 59.683 47.826 0.00 0.00 35.57 2.39
794 796 4.036027 CAGCCCATTTCTCATGTGTATGAC 59.964 45.833 11.52 6.16 38.37 3.06
796 798 4.398988 GCCCATTTCTCATGTGTATGACAA 59.601 41.667 11.52 0.00 38.37 3.18
797 799 5.677091 GCCCATTTCTCATGTGTATGACAAC 60.677 44.000 11.52 0.00 38.37 3.32
799 801 6.183360 CCCATTTCTCATGTGTATGACAACTC 60.183 42.308 11.52 0.00 38.37 3.01
801 803 6.785488 TTTCTCATGTGTATGACAACTCAC 57.215 37.500 0.00 0.00 38.37 3.51
802 804 4.485163 TCTCATGTGTATGACAACTCACG 58.515 43.478 0.00 0.00 38.37 4.35
803 805 2.993220 TCATGTGTATGACAACTCACGC 59.007 45.455 0.00 0.00 38.37 5.34
804 806 1.790755 TGTGTATGACAACTCACGCC 58.209 50.000 0.00 0.00 34.08 5.68
805 807 1.069358 TGTGTATGACAACTCACGCCA 59.931 47.619 0.00 0.00 34.08 5.69
806 808 1.726791 GTGTATGACAACTCACGCCAG 59.273 52.381 0.00 0.00 0.00 4.85
807 809 0.721718 GTATGACAACTCACGCCAGC 59.278 55.000 0.00 0.00 0.00 4.85
808 810 0.391130 TATGACAACTCACGCCAGCC 60.391 55.000 0.00 0.00 0.00 4.85
809 811 3.050275 GACAACTCACGCCAGCCC 61.050 66.667 0.00 0.00 0.00 5.19
810 812 3.825160 GACAACTCACGCCAGCCCA 62.825 63.158 0.00 0.00 0.00 5.36
811 813 2.360350 CAACTCACGCCAGCCCAT 60.360 61.111 0.00 0.00 0.00 4.00
812 814 2.045926 AACTCACGCCAGCCCATC 60.046 61.111 0.00 0.00 0.00 3.51
813 815 2.894257 AACTCACGCCAGCCCATCA 61.894 57.895 0.00 0.00 0.00 3.07
814 816 2.046023 CTCACGCCAGCCCATCAA 60.046 61.111 0.00 0.00 0.00 2.57
815 817 2.046023 TCACGCCAGCCCATCAAG 60.046 61.111 0.00 0.00 0.00 3.02
817 819 2.045926 ACGCCAGCCCATCAAGAC 60.046 61.111 0.00 0.00 0.00 3.01
821 823 1.383799 CCAGCCCATCAAGACCCAA 59.616 57.895 0.00 0.00 0.00 4.12
822 824 0.682209 CCAGCCCATCAAGACCCAAG 60.682 60.000 0.00 0.00 0.00 3.61
823 825 0.329261 CAGCCCATCAAGACCCAAGA 59.671 55.000 0.00 0.00 0.00 3.02
824 826 1.064166 CAGCCCATCAAGACCCAAGAT 60.064 52.381 0.00 0.00 0.00 2.40
826 828 1.752084 GCCCATCAAGACCCAAGATCC 60.752 57.143 0.00 0.00 0.00 3.36
827 829 1.565759 CCCATCAAGACCCAAGATCCA 59.434 52.381 0.00 0.00 0.00 3.41
828 830 2.025037 CCCATCAAGACCCAAGATCCAA 60.025 50.000 0.00 0.00 0.00 3.53
829 831 3.285484 CCATCAAGACCCAAGATCCAAG 58.715 50.000 0.00 0.00 0.00 3.61
830 832 3.054139 CCATCAAGACCCAAGATCCAAGA 60.054 47.826 0.00 0.00 0.00 3.02
831 833 4.568380 CCATCAAGACCCAAGATCCAAGAA 60.568 45.833 0.00 0.00 0.00 2.52
833 835 5.060427 TCAAGACCCAAGATCCAAGAAAA 57.940 39.130 0.00 0.00 0.00 2.29
834 836 5.644188 TCAAGACCCAAGATCCAAGAAAAT 58.356 37.500 0.00 0.00 0.00 1.82
835 837 6.077322 TCAAGACCCAAGATCCAAGAAAATT 58.923 36.000 0.00 0.00 0.00 1.82
836 838 6.209391 TCAAGACCCAAGATCCAAGAAAATTC 59.791 38.462 0.00 0.00 0.00 2.17
837 839 5.019470 AGACCCAAGATCCAAGAAAATTCC 58.981 41.667 0.00 0.00 0.00 3.01
838 840 4.096681 ACCCAAGATCCAAGAAAATTCCC 58.903 43.478 0.00 0.00 0.00 3.97
839 841 4.202825 ACCCAAGATCCAAGAAAATTCCCT 60.203 41.667 0.00 0.00 0.00 4.20
840 842 5.016245 ACCCAAGATCCAAGAAAATTCCCTA 59.984 40.000 0.00 0.00 0.00 3.53
841 843 5.360999 CCCAAGATCCAAGAAAATTCCCTAC 59.639 44.000 0.00 0.00 0.00 3.18
842 844 5.360999 CCAAGATCCAAGAAAATTCCCTACC 59.639 44.000 0.00 0.00 0.00 3.18
843 845 6.190587 CAAGATCCAAGAAAATTCCCTACCT 58.809 40.000 0.00 0.00 0.00 3.08
844 846 5.760131 AGATCCAAGAAAATTCCCTACCTG 58.240 41.667 0.00 0.00 0.00 4.00
845 847 3.697166 TCCAAGAAAATTCCCTACCTGC 58.303 45.455 0.00 0.00 0.00 4.85
846 848 3.075283 TCCAAGAAAATTCCCTACCTGCA 59.925 43.478 0.00 0.00 0.00 4.41
847 849 3.193479 CCAAGAAAATTCCCTACCTGCAC 59.807 47.826 0.00 0.00 0.00 4.57
850 852 2.808906 AAATTCCCTACCTGCACTCC 57.191 50.000 0.00 0.00 0.00 3.85
851 853 0.919710 AATTCCCTACCTGCACTCCC 59.080 55.000 0.00 0.00 0.00 4.30
853 855 3.470888 CCCTACCTGCACTCCCCG 61.471 72.222 0.00 0.00 0.00 5.73
855 857 2.579201 CTACCTGCACTCCCCGTG 59.421 66.667 0.00 0.00 46.58 4.94
856 858 1.982395 CTACCTGCACTCCCCGTGA 60.982 63.158 0.00 0.00 46.81 4.35
857 859 1.305802 TACCTGCACTCCCCGTGAT 60.306 57.895 0.00 0.00 46.81 3.06
858 860 1.327690 TACCTGCACTCCCCGTGATC 61.328 60.000 0.00 0.00 46.81 2.92
859 861 2.362369 CCTGCACTCCCCGTGATCT 61.362 63.158 0.00 0.00 46.81 2.75
860 862 1.599047 CTGCACTCCCCGTGATCTT 59.401 57.895 0.00 0.00 46.81 2.40
861 863 0.036010 CTGCACTCCCCGTGATCTTT 60.036 55.000 0.00 0.00 46.81 2.52
862 864 0.400213 TGCACTCCCCGTGATCTTTT 59.600 50.000 0.00 0.00 46.81 2.27
898 900 2.972505 CACAGTCCACACCACGGC 60.973 66.667 0.00 0.00 0.00 5.68
903 905 4.920112 TCCACACCACGGCCGTTG 62.920 66.667 32.11 28.90 0.00 4.10
923 925 4.069232 CGGCGCTTCTCCACTCCA 62.069 66.667 7.64 0.00 0.00 3.86
924 926 2.435059 GGCGCTTCTCCACTCCAC 60.435 66.667 7.64 0.00 0.00 4.02
926 928 1.605058 GGCGCTTCTCCACTCCACTA 61.605 60.000 7.64 0.00 0.00 2.74
927 929 0.458716 GCGCTTCTCCACTCCACTAC 60.459 60.000 0.00 0.00 0.00 2.73
999 1004 4.424711 GCCCAATCCCCGCTCACA 62.425 66.667 0.00 0.00 0.00 3.58
1189 3496 2.345991 GCTACCGTGCCTTCCACA 59.654 61.111 0.00 0.00 44.91 4.17
1227 3534 1.072331 GGCTTCCTCCACAACAAGAGA 59.928 52.381 0.00 0.00 31.43 3.10
1512 3841 0.759436 AGGATTGGGGCGAGTACGAT 60.759 55.000 0.00 0.00 42.66 3.73
1783 4112 1.175347 TGAGCAGAGCGACAGTGTCT 61.175 55.000 20.64 3.05 0.00 3.41
1822 4151 3.496884 TGAGCAAAAACTGTCGGTGATAC 59.503 43.478 0.00 0.00 0.00 2.24
1918 8492 4.398319 CCACATATGGTTAATGGAGGTCC 58.602 47.826 7.80 0.00 41.64 4.46
1919 8493 4.065088 CACATATGGTTAATGGAGGTCCG 58.935 47.826 7.80 0.00 39.43 4.79
1920 8494 3.714798 ACATATGGTTAATGGAGGTCCGT 59.285 43.478 7.80 0.00 39.43 4.69
2102 8676 4.932789 TTCGGGCCGAATCAAGAG 57.067 55.556 35.71 0.00 41.05 2.85
2352 9203 7.744087 TTATGCACATTTCTCAGTAGTTGTT 57.256 32.000 0.00 0.00 0.00 2.83
2399 9253 3.439476 GGATCAACATATCTGCTCCATGC 59.561 47.826 0.00 0.00 43.25 4.06
2460 9399 9.083422 TGCTCTAGTAGATATGTTGCTCTAATT 57.917 33.333 0.00 0.00 0.00 1.40
2493 9432 5.307196 TGGATAGGTTAATCTAGTTGGAGCC 59.693 44.000 1.28 0.00 0.00 4.70
2578 9525 8.959734 AATATAAGACGTTTTGGCAGTTTAAC 57.040 30.769 0.83 0.00 0.00 2.01
2579 9526 3.328237 AGACGTTTTGGCAGTTTAACG 57.672 42.857 18.14 18.14 46.26 3.18
2714 9680 3.253432 CCAAGGGAAAGTTCTGTTGCTAC 59.747 47.826 0.00 0.00 0.00 3.58
2724 9690 1.269723 TCTGTTGCTACGTGTCTCCAG 59.730 52.381 0.00 0.00 0.00 3.86
2799 9765 3.445096 GCTTGGTTGATTTGGACAGCTAT 59.555 43.478 0.00 0.00 0.00 2.97
2857 9823 9.076781 TCCTCTTCTACTCATAAGATCATCTTG 57.923 37.037 10.42 0.00 37.29 3.02
2919 9885 3.442977 GCCGACCTCTGACTAAACTTCTA 59.557 47.826 0.00 0.00 0.00 2.10
2920 9886 4.098196 GCCGACCTCTGACTAAACTTCTAT 59.902 45.833 0.00 0.00 0.00 1.98
2970 9939 2.609002 TCAAATGGCGTCAAGATGATCG 59.391 45.455 0.00 0.00 0.00 3.69
3054 10023 4.417506 GTTGTGTTGGACAGTTTGGTTAC 58.582 43.478 0.00 0.00 35.44 2.50
3090 10060 3.566853 CTATGTGTGCCTGCGCCG 61.567 66.667 4.18 0.00 0.00 6.46
3121 10091 3.973516 TTCGTCCGAGCTGCGTGT 61.974 61.111 0.00 0.00 38.67 4.49
3122 10092 4.700365 TCGTCCGAGCTGCGTGTG 62.700 66.667 0.00 0.00 38.67 3.82
3124 10094 3.106407 GTCCGAGCTGCGTGTGTC 61.106 66.667 0.00 0.00 38.67 3.67
3162 10137 0.543277 CAGCAGGGATGCTTCACCTA 59.457 55.000 0.00 0.00 43.52 3.08
3184 10167 6.710744 CCTAAATGAATGTAAGGAAGCGGTAT 59.289 38.462 0.00 0.00 0.00 2.73
3214 10205 6.668541 ATGAAGAACATGATCGGTTAACTG 57.331 37.500 8.22 8.22 37.87 3.16
3292 10283 0.878086 GATAAGCTGGGCTGAGTCGC 60.878 60.000 0.00 0.00 39.62 5.19
3340 10333 1.151668 GTTGTGCAGTGCTCGAAGAT 58.848 50.000 17.60 0.00 33.89 2.40
3343 10336 3.038788 TGTGCAGTGCTCGAAGATAAA 57.961 42.857 17.60 0.00 33.89 1.40
3369 10362 1.897615 CGTTTGCGGGGGTGGTTTA 60.898 57.895 0.00 0.00 0.00 2.01
3478 10471 5.385617 CACAACCTCTTTCGATGACATTTC 58.614 41.667 0.00 0.00 0.00 2.17
3481 10474 4.759782 ACCTCTTTCGATGACATTTCGAT 58.240 39.130 2.20 0.00 44.32 3.59
3496 10489 0.529773 TCGATGTCGCACAATAGGGC 60.530 55.000 0.00 0.00 39.60 5.19
3497 10490 0.809636 CGATGTCGCACAATAGGGCA 60.810 55.000 0.00 0.00 0.00 5.36
3504 10498 3.127895 GTCGCACAATAGGGCAATGTTTA 59.872 43.478 0.00 0.00 0.00 2.01
3506 10500 4.043750 CGCACAATAGGGCAATGTTTATG 58.956 43.478 0.00 0.00 0.00 1.90
3529 10523 1.679680 CAGCCATGGCATTAGAGTTGG 59.320 52.381 37.18 10.00 44.88 3.77
3538 10532 6.406692 TGGCATTAGAGTTGGAGTATAGAC 57.593 41.667 0.00 0.00 0.00 2.59
3539 10533 6.136857 TGGCATTAGAGTTGGAGTATAGACT 58.863 40.000 0.00 0.00 39.20 3.24
3541 10535 6.451393 GCATTAGAGTTGGAGTATAGACTGG 58.549 44.000 0.00 0.00 35.45 4.00
3547 10602 5.407049 AGTTGGAGTATAGACTGGCCATAT 58.593 41.667 5.51 3.91 35.45 1.78
3558 10613 8.854614 ATAGACTGGCCATATTCTTTGTATTC 57.145 34.615 5.51 0.00 0.00 1.75
3566 10621 9.515226 GGCCATATTCTTTGTATTCAACCTATA 57.485 33.333 0.00 0.00 32.93 1.31
3593 10648 6.819649 CCATATTCTTTTGCACCATGACAAAT 59.180 34.615 0.00 0.00 35.81 2.32
3652 10708 2.561478 TGCTACTGGTTTGGAGTTCC 57.439 50.000 0.00 0.00 0.00 3.62
3653 10709 1.771854 TGCTACTGGTTTGGAGTTCCA 59.228 47.619 0.00 0.00 45.94 3.53
3673 10738 8.246180 AGTTCCATCTTTGTATTTGTAATGCAG 58.754 33.333 0.00 0.00 0.00 4.41
3677 10742 7.415989 CCATCTTTGTATTTGTAATGCAGAGCT 60.416 37.037 0.00 0.00 0.00 4.09
3678 10743 6.845302 TCTTTGTATTTGTAATGCAGAGCTG 58.155 36.000 0.00 0.00 0.00 4.24
3686 10751 7.395190 TTTGTAATGCAGAGCTGACAAATAT 57.605 32.000 0.85 0.00 33.70 1.28
3687 10752 8.504812 TTTGTAATGCAGAGCTGACAAATATA 57.495 30.769 0.85 0.00 33.70 0.86
3688 10753 7.482654 TGTAATGCAGAGCTGACAAATATAC 57.517 36.000 0.85 3.82 0.00 1.47
3689 10754 6.483307 TGTAATGCAGAGCTGACAAATATACC 59.517 38.462 0.85 0.00 0.00 2.73
3691 10756 3.132111 TGCAGAGCTGACAAATATACCGA 59.868 43.478 0.85 0.00 0.00 4.69
3692 10757 4.119862 GCAGAGCTGACAAATATACCGAA 58.880 43.478 0.85 0.00 0.00 4.30
3699 10764 6.767902 AGCTGACAAATATACCGAAATGACAT 59.232 34.615 0.00 0.00 0.00 3.06
3713 10778 7.148407 ACCGAAATGACATAGAGAAAACATGTC 60.148 37.037 0.00 6.93 45.66 3.06
3720 10785 8.764524 GACATAGAGAAAACATGTCAAGTAGT 57.235 34.615 0.00 0.00 45.09 2.73
3721 10786 9.856488 GACATAGAGAAAACATGTCAAGTAGTA 57.144 33.333 0.00 0.00 45.09 1.82
3722 10787 9.640963 ACATAGAGAAAACATGTCAAGTAGTAC 57.359 33.333 0.00 0.00 0.00 2.73
3723 10788 9.862371 CATAGAGAAAACATGTCAAGTAGTACT 57.138 33.333 0.00 0.00 0.00 2.73
3752 10817 9.646427 AAGTTAAATACACAGCTTGAAAACAAA 57.354 25.926 3.37 0.00 0.00 2.83
3753 10818 9.301153 AGTTAAATACACAGCTTGAAAACAAAG 57.699 29.630 3.37 0.00 0.00 2.77
3766 10831 7.903995 TTGAAAACAAAGCAAGACAAAATCT 57.096 28.000 0.00 0.00 40.46 2.40
3767 10832 7.293402 TGAAAACAAAGCAAGACAAAATCTG 57.707 32.000 0.00 0.00 37.88 2.90
3768 10833 7.095910 TGAAAACAAAGCAAGACAAAATCTGA 58.904 30.769 0.00 0.00 37.88 3.27
3769 10834 7.765360 TGAAAACAAAGCAAGACAAAATCTGAT 59.235 29.630 0.00 0.00 37.88 2.90
3770 10835 7.473027 AAACAAAGCAAGACAAAATCTGATG 57.527 32.000 0.00 0.00 37.88 3.07
3771 10836 4.986659 ACAAAGCAAGACAAAATCTGATGC 59.013 37.500 0.00 0.00 37.88 3.91
3772 10837 3.863142 AGCAAGACAAAATCTGATGCC 57.137 42.857 0.00 0.00 37.88 4.40
3773 10838 2.163010 AGCAAGACAAAATCTGATGCCG 59.837 45.455 0.00 0.00 37.88 5.69
3774 10839 2.162208 GCAAGACAAAATCTGATGCCGA 59.838 45.455 0.00 0.00 37.88 5.54
3775 10840 3.181493 GCAAGACAAAATCTGATGCCGAT 60.181 43.478 0.00 0.00 37.88 4.18
3776 10841 4.035558 GCAAGACAAAATCTGATGCCGATA 59.964 41.667 0.00 0.00 37.88 2.92
3777 10842 5.449041 GCAAGACAAAATCTGATGCCGATAA 60.449 40.000 0.00 0.00 37.88 1.75
3778 10843 6.732154 CAAGACAAAATCTGATGCCGATAAT 58.268 36.000 0.00 0.00 37.88 1.28
3779 10844 7.520453 GCAAGACAAAATCTGATGCCGATAATA 60.520 37.037 0.00 0.00 37.88 0.98
3780 10845 7.664082 AGACAAAATCTGATGCCGATAATAG 57.336 36.000 0.00 0.00 35.81 1.73
3781 10846 7.445121 AGACAAAATCTGATGCCGATAATAGA 58.555 34.615 0.00 0.00 35.81 1.98
3782 10847 8.099537 AGACAAAATCTGATGCCGATAATAGAT 58.900 33.333 0.00 0.00 35.81 1.98
3783 10848 8.627208 ACAAAATCTGATGCCGATAATAGATT 57.373 30.769 0.00 0.00 36.69 2.40
3784 10849 9.725019 ACAAAATCTGATGCCGATAATAGATTA 57.275 29.630 0.00 0.00 34.74 1.75
3790 10855 9.942850 TCTGATGCCGATAATAGATTAAATTCA 57.057 29.630 0.00 0.00 0.00 2.57
3795 10860 8.946085 TGCCGATAATAGATTAAATTCATGTCC 58.054 33.333 0.00 0.00 0.00 4.02
3796 10861 9.167311 GCCGATAATAGATTAAATTCATGTCCT 57.833 33.333 0.00 0.00 0.00 3.85
3809 10874 5.715439 TTCATGTCCTGAATATGGAACCT 57.285 39.130 0.00 0.00 38.97 3.50
3810 10875 5.715439 TCATGTCCTGAATATGGAACCTT 57.285 39.130 0.00 0.00 35.10 3.50
3811 10876 5.439721 TCATGTCCTGAATATGGAACCTTG 58.560 41.667 0.00 0.00 35.10 3.61
3812 10877 4.235079 TGTCCTGAATATGGAACCTTGG 57.765 45.455 0.00 0.00 35.10 3.61
3813 10878 2.952310 GTCCTGAATATGGAACCTTGGC 59.048 50.000 0.00 0.00 35.10 4.52
3814 10879 2.091885 TCCTGAATATGGAACCTTGGCC 60.092 50.000 0.00 0.00 0.00 5.36
3815 10880 2.091665 CCTGAATATGGAACCTTGGCCT 60.092 50.000 3.32 0.00 0.00 5.19
3816 10881 3.628257 CCTGAATATGGAACCTTGGCCTT 60.628 47.826 3.32 0.00 0.00 4.35
3817 10882 3.631250 TGAATATGGAACCTTGGCCTTC 58.369 45.455 3.32 0.00 0.00 3.46
3818 10883 2.755952 ATATGGAACCTTGGCCTTCC 57.244 50.000 13.39 13.39 37.11 3.46
3819 10884 3.681129 TGGAACCTTGGCCTTCCA 58.319 55.556 17.90 17.90 43.05 3.53
3820 10885 1.460255 TGGAACCTTGGCCTTCCAG 59.540 57.895 17.90 2.90 44.53 3.86
3821 10886 1.360393 TGGAACCTTGGCCTTCCAGT 61.360 55.000 17.90 0.00 44.53 4.00
3822 10887 0.609406 GGAACCTTGGCCTTCCAGTC 60.609 60.000 14.99 1.22 44.53 3.51
3823 10888 0.402121 GAACCTTGGCCTTCCAGTCT 59.598 55.000 3.32 0.00 44.53 3.24
3824 10889 0.853530 AACCTTGGCCTTCCAGTCTT 59.146 50.000 3.32 0.00 44.53 3.01
3825 10890 1.742308 ACCTTGGCCTTCCAGTCTTA 58.258 50.000 3.32 0.00 44.53 2.10
3826 10891 2.279173 ACCTTGGCCTTCCAGTCTTAT 58.721 47.619 3.32 0.00 44.53 1.73
3827 10892 2.649816 ACCTTGGCCTTCCAGTCTTATT 59.350 45.455 3.32 0.00 44.53 1.40
3828 10893 3.019564 CCTTGGCCTTCCAGTCTTATTG 58.980 50.000 3.32 0.00 44.53 1.90
3829 10894 3.562176 CCTTGGCCTTCCAGTCTTATTGT 60.562 47.826 3.32 0.00 44.53 2.71
3830 10895 3.350219 TGGCCTTCCAGTCTTATTGTC 57.650 47.619 3.32 0.00 37.47 3.18
3831 10896 2.912956 TGGCCTTCCAGTCTTATTGTCT 59.087 45.455 3.32 0.00 37.47 3.41
3832 10897 3.330701 TGGCCTTCCAGTCTTATTGTCTT 59.669 43.478 3.32 0.00 37.47 3.01
3833 10898 4.534500 TGGCCTTCCAGTCTTATTGTCTTA 59.466 41.667 3.32 0.00 37.47 2.10
3834 10899 4.876679 GGCCTTCCAGTCTTATTGTCTTAC 59.123 45.833 0.00 0.00 0.00 2.34
3835 10900 5.338463 GGCCTTCCAGTCTTATTGTCTTACT 60.338 44.000 0.00 0.00 0.00 2.24
3836 10901 5.813157 GCCTTCCAGTCTTATTGTCTTACTC 59.187 44.000 0.00 0.00 0.00 2.59
3837 10902 6.351456 GCCTTCCAGTCTTATTGTCTTACTCT 60.351 42.308 0.00 0.00 0.00 3.24
3838 10903 7.038659 CCTTCCAGTCTTATTGTCTTACTCTG 58.961 42.308 0.00 0.00 0.00 3.35
3839 10904 7.093727 CCTTCCAGTCTTATTGTCTTACTCTGA 60.094 40.741 0.00 0.00 0.00 3.27
3840 10905 7.962995 TCCAGTCTTATTGTCTTACTCTGAT 57.037 36.000 0.00 0.00 0.00 2.90
3841 10906 8.001881 TCCAGTCTTATTGTCTTACTCTGATC 57.998 38.462 0.00 0.00 0.00 2.92
3842 10907 7.615757 TCCAGTCTTATTGTCTTACTCTGATCA 59.384 37.037 0.00 0.00 0.00 2.92
3843 10908 7.704472 CCAGTCTTATTGTCTTACTCTGATCAC 59.296 40.741 0.00 0.00 0.00 3.06
3844 10909 7.430793 CAGTCTTATTGTCTTACTCTGATCACG 59.569 40.741 0.00 0.00 0.00 4.35
3845 10910 7.337184 AGTCTTATTGTCTTACTCTGATCACGA 59.663 37.037 0.00 0.00 0.00 4.35
3846 10911 7.968956 GTCTTATTGTCTTACTCTGATCACGAA 59.031 37.037 0.00 0.00 0.00 3.85
3847 10912 8.184848 TCTTATTGTCTTACTCTGATCACGAAG 58.815 37.037 0.00 0.00 0.00 3.79
3849 10914 5.707242 TGTCTTACTCTGATCACGAAGTT 57.293 39.130 6.09 0.00 41.61 2.66
3850 10915 6.085555 TGTCTTACTCTGATCACGAAGTTT 57.914 37.500 6.09 0.00 41.61 2.66
3851 10916 5.920840 TGTCTTACTCTGATCACGAAGTTTG 59.079 40.000 6.09 0.00 41.61 2.93
3852 10917 6.150318 GTCTTACTCTGATCACGAAGTTTGA 58.850 40.000 6.09 0.00 41.61 2.69
3853 10918 6.641314 GTCTTACTCTGATCACGAAGTTTGAA 59.359 38.462 6.09 0.00 41.61 2.69
3854 10919 7.329717 GTCTTACTCTGATCACGAAGTTTGAAT 59.670 37.037 6.09 0.00 41.61 2.57
3855 10920 5.852738 ACTCTGATCACGAAGTTTGAATG 57.147 39.130 0.00 0.00 41.61 2.67
3856 10921 4.153117 ACTCTGATCACGAAGTTTGAATGC 59.847 41.667 0.00 0.00 41.61 3.56
3857 10922 4.318332 TCTGATCACGAAGTTTGAATGCT 58.682 39.130 0.00 0.00 41.61 3.79
3858 10923 4.152938 TCTGATCACGAAGTTTGAATGCTG 59.847 41.667 0.00 0.00 41.61 4.41
3859 10924 2.686558 TCACGAAGTTTGAATGCTGC 57.313 45.000 0.00 0.00 41.61 5.25
3860 10925 2.221169 TCACGAAGTTTGAATGCTGCT 58.779 42.857 0.00 0.00 41.61 4.24
3861 10926 2.031769 TCACGAAGTTTGAATGCTGCTG 60.032 45.455 0.00 0.00 41.61 4.41
3862 10927 1.949525 ACGAAGTTTGAATGCTGCTGT 59.050 42.857 0.00 0.00 37.78 4.40
3863 10928 2.358898 ACGAAGTTTGAATGCTGCTGTT 59.641 40.909 0.00 0.00 37.78 3.16
3864 10929 3.563808 ACGAAGTTTGAATGCTGCTGTTA 59.436 39.130 0.00 0.00 37.78 2.41
3865 10930 4.153986 CGAAGTTTGAATGCTGCTGTTAG 58.846 43.478 0.00 0.00 0.00 2.34
3866 10931 4.083855 CGAAGTTTGAATGCTGCTGTTAGA 60.084 41.667 0.00 0.00 0.00 2.10
3867 10932 5.368256 AAGTTTGAATGCTGCTGTTAGAG 57.632 39.130 0.00 0.00 0.00 2.43
3868 10933 3.755378 AGTTTGAATGCTGCTGTTAGAGG 59.245 43.478 0.00 0.00 0.00 3.69
3869 10934 1.742761 TGAATGCTGCTGTTAGAGGC 58.257 50.000 0.00 0.00 0.00 4.70
3870 10935 1.003464 TGAATGCTGCTGTTAGAGGCA 59.997 47.619 0.00 0.00 37.32 4.75
3875 10940 3.073228 TGCTGTTAGAGGCAGGTCT 57.927 52.632 0.00 0.00 34.73 3.85
3876 10941 0.610174 TGCTGTTAGAGGCAGGTCTG 59.390 55.000 0.00 0.00 34.73 3.51
3887 10952 2.280835 CAGGTCTGCTACAGGCTCA 58.719 57.895 0.00 0.00 42.39 4.26
3888 10953 0.610174 CAGGTCTGCTACAGGCTCAA 59.390 55.000 0.00 0.00 42.39 3.02
3889 10954 1.209019 CAGGTCTGCTACAGGCTCAAT 59.791 52.381 0.00 0.00 42.39 2.57
3890 10955 1.912043 AGGTCTGCTACAGGCTCAATT 59.088 47.619 0.00 0.00 42.39 2.32
3891 10956 2.012673 GGTCTGCTACAGGCTCAATTG 58.987 52.381 0.00 0.00 42.39 2.32
3892 10957 2.616510 GGTCTGCTACAGGCTCAATTGT 60.617 50.000 5.13 0.00 42.39 2.71
3893 10958 3.077359 GTCTGCTACAGGCTCAATTGTT 58.923 45.455 5.13 0.00 42.39 2.83
3894 10959 3.076621 TCTGCTACAGGCTCAATTGTTG 58.923 45.455 5.13 1.26 42.39 3.33
3895 10960 1.541147 TGCTACAGGCTCAATTGTTGC 59.459 47.619 5.13 10.95 43.25 4.17
3896 10961 1.466360 GCTACAGGCTCAATTGTTGCG 60.466 52.381 5.13 3.11 36.61 4.85
3897 10962 2.076100 CTACAGGCTCAATTGTTGCGA 58.924 47.619 5.13 0.00 0.00 5.10
3898 10963 0.877071 ACAGGCTCAATTGTTGCGAG 59.123 50.000 5.13 9.36 0.00 5.03
3899 10964 1.159285 CAGGCTCAATTGTTGCGAGA 58.841 50.000 5.13 0.00 0.00 4.04
3900 10965 1.741706 CAGGCTCAATTGTTGCGAGAT 59.258 47.619 5.13 0.00 0.00 2.75
3901 10966 2.012673 AGGCTCAATTGTTGCGAGATC 58.987 47.619 5.13 0.00 0.00 2.75
3902 10967 1.739466 GGCTCAATTGTTGCGAGATCA 59.261 47.619 5.13 0.00 0.00 2.92
3903 10968 2.223203 GGCTCAATTGTTGCGAGATCAG 60.223 50.000 5.13 0.00 0.00 2.90
3904 10969 2.674852 GCTCAATTGTTGCGAGATCAGA 59.325 45.455 5.13 0.00 0.00 3.27
3905 10970 3.311871 GCTCAATTGTTGCGAGATCAGAT 59.688 43.478 5.13 0.00 0.00 2.90
3906 10971 4.552378 GCTCAATTGTTGCGAGATCAGATC 60.552 45.833 5.13 1.64 0.00 2.75
3907 10972 3.553105 TCAATTGTTGCGAGATCAGATCG 59.447 43.478 5.13 0.00 43.00 3.69
3912 10977 4.241715 CGAGATCAGATCGCTGGC 57.758 61.111 11.87 0.00 42.53 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.503566 TCTCAGAGTTTGATCAAAATGGTTCTT 59.496 33.333 24.51 4.97 34.68 2.52
39 40 9.212641 CTTACAGAAATCTCAGAGTTTGATCAA 57.787 33.333 3.38 3.38 34.68 2.57
50 51 7.359598 CGTCTTTTGGACTTACAGAAATCTCAG 60.360 40.741 0.00 0.00 42.44 3.35
77 78 4.862641 AATACCTAGCAAACATGGGAGT 57.137 40.909 0.00 0.00 0.00 3.85
119 120 8.321353 TCACTCTCCAAAGATGCTAGAAAAATA 58.679 33.333 0.00 0.00 0.00 1.40
129 130 2.087646 GGGTTCACTCTCCAAAGATGC 58.912 52.381 0.00 0.00 0.00 3.91
137 138 3.375699 TCAATCTAGGGGTTCACTCTCC 58.624 50.000 0.00 0.00 0.00 3.71
159 160 1.073923 GGACTGACTCCACCACCAATT 59.926 52.381 0.00 0.00 39.21 2.32
164 165 0.106149 AAACGGACTGACTCCACCAC 59.894 55.000 0.00 0.00 39.39 4.16
194 195 0.746063 CTTTGACACCTTGCAGGCAA 59.254 50.000 6.53 6.53 39.63 4.52
276 277 2.489722 GAGAGGGCACAAGGAAAATGAC 59.510 50.000 0.00 0.00 0.00 3.06
294 295 2.405172 CTCGATCATCGACGTAGGAGA 58.595 52.381 5.39 0.00 44.82 3.71
295 296 1.136197 GCTCGATCATCGACGTAGGAG 60.136 57.143 5.39 0.00 44.82 3.69
296 297 0.866427 GCTCGATCATCGACGTAGGA 59.134 55.000 5.39 0.00 44.82 2.94
297 298 0.451299 CGCTCGATCATCGACGTAGG 60.451 60.000 18.15 6.42 44.82 3.18
298 299 0.232559 ACGCTCGATCATCGACGTAG 59.767 55.000 25.77 11.49 46.19 3.51
299 300 2.304428 ACGCTCGATCATCGACGTA 58.696 52.632 25.77 1.60 46.19 3.57
300 301 3.099438 ACGCTCGATCATCGACGT 58.901 55.556 23.21 23.21 44.82 4.34
302 303 0.248094 TGTGACGCTCGATCATCGAC 60.248 55.000 5.39 2.67 44.82 4.20
304 305 1.449789 GATTGTGACGCTCGATCATCG 59.550 52.381 0.00 0.00 42.10 3.84
305 306 1.789464 GGATTGTGACGCTCGATCATC 59.211 52.381 0.00 0.00 0.00 2.92
308 309 1.590238 CAAGGATTGTGACGCTCGATC 59.410 52.381 0.00 0.00 42.34 3.69
310 311 3.122150 CAAGGATTGTGACGCTCGA 57.878 52.632 0.00 0.00 42.34 4.04
355 356 6.150976 ACGACAATGGCTGAATAAAAAGATCA 59.849 34.615 0.00 0.00 0.00 2.92
356 357 6.470235 CACGACAATGGCTGAATAAAAAGATC 59.530 38.462 0.00 0.00 0.00 2.75
358 359 5.335583 CCACGACAATGGCTGAATAAAAAGA 60.336 40.000 0.00 0.00 31.52 2.52
362 363 3.417101 ACCACGACAATGGCTGAATAAA 58.583 40.909 0.00 0.00 44.33 1.40
363 364 3.066291 ACCACGACAATGGCTGAATAA 57.934 42.857 0.00 0.00 44.33 1.40
364 365 2.779755 ACCACGACAATGGCTGAATA 57.220 45.000 0.00 0.00 44.33 1.75
366 367 1.606668 GAAACCACGACAATGGCTGAA 59.393 47.619 0.00 0.00 44.33 3.02
367 368 1.234821 GAAACCACGACAATGGCTGA 58.765 50.000 0.00 0.00 44.33 4.26
368 369 0.950836 TGAAACCACGACAATGGCTG 59.049 50.000 0.00 0.00 44.33 4.85
370 371 4.551990 CGTATATGAAACCACGACAATGGC 60.552 45.833 0.00 0.00 44.33 4.40
390 391 0.451383 GCTTGCCAATGACATGCGTA 59.549 50.000 0.00 0.00 0.00 4.42
403 404 0.958382 TGGTGAACGTATGGCTTGCC 60.958 55.000 4.43 4.43 0.00 4.52
440 441 8.870075 AGCAAAACATATTTCTTTCTACCTCT 57.130 30.769 0.00 0.00 0.00 3.69
470 472 2.277373 CGTAGTCGCGGACAGCTC 60.277 66.667 6.13 0.00 45.59 4.09
485 487 6.842437 AGTACAAGATATATGCATCCTCGT 57.158 37.500 0.19 0.00 0.00 4.18
536 538 7.841915 TTATTATCACACATGACACATCGTT 57.158 32.000 0.00 0.00 37.79 3.85
538 540 8.435430 GGTATTATTATCACACATGACACATCG 58.565 37.037 0.00 0.00 37.79 3.84
540 542 7.095229 GCGGTATTATTATCACACATGACACAT 60.095 37.037 0.00 0.00 37.79 3.21
544 546 6.779115 TGCGGTATTATTATCACACATGAC 57.221 37.500 0.00 0.00 37.79 3.06
545 547 7.793927 TTTGCGGTATTATTATCACACATGA 57.206 32.000 0.00 0.00 39.83 3.07
546 548 9.117145 GATTTTGCGGTATTATTATCACACATG 57.883 33.333 0.00 0.00 0.00 3.21
547 549 8.845227 TGATTTTGCGGTATTATTATCACACAT 58.155 29.630 0.00 0.00 0.00 3.21
549 551 9.169468 CTTGATTTTGCGGTATTATTATCACAC 57.831 33.333 0.00 0.00 0.00 3.82
551 553 9.730420 AACTTGATTTTGCGGTATTATTATCAC 57.270 29.630 0.00 0.00 0.00 3.06
585 587 9.990360 GAGAAACCCCACAAAGAAAATTAATTA 57.010 29.630 0.01 0.00 0.00 1.40
586 588 8.490311 TGAGAAACCCCACAAAGAAAATTAATT 58.510 29.630 0.00 0.00 0.00 1.40
587 589 8.028652 TGAGAAACCCCACAAAGAAAATTAAT 57.971 30.769 0.00 0.00 0.00 1.40
589 591 7.610580 ATGAGAAACCCCACAAAGAAAATTA 57.389 32.000 0.00 0.00 0.00 1.40
591 593 6.782494 ACTATGAGAAACCCCACAAAGAAAAT 59.218 34.615 0.00 0.00 0.00 1.82
592 594 6.133356 ACTATGAGAAACCCCACAAAGAAAA 58.867 36.000 0.00 0.00 0.00 2.29
594 596 5.319043 ACTATGAGAAACCCCACAAAGAA 57.681 39.130 0.00 0.00 0.00 2.52
596 598 7.703058 ATAAACTATGAGAAACCCCACAAAG 57.297 36.000 0.00 0.00 0.00 2.77
598 600 9.589461 TTTAATAAACTATGAGAAACCCCACAA 57.411 29.630 0.00 0.00 0.00 3.33
599 601 9.016438 GTTTAATAAACTATGAGAAACCCCACA 57.984 33.333 8.51 0.00 38.35 4.17
600 602 8.464404 GGTTTAATAAACTATGAGAAACCCCAC 58.536 37.037 14.61 0.00 38.81 4.61
602 604 7.337689 ACGGTTTAATAAACTATGAGAAACCCC 59.662 37.037 14.61 0.00 40.69 4.95
604 606 8.938906 TGACGGTTTAATAAACTATGAGAAACC 58.061 33.333 14.61 0.00 41.14 3.27
614 616 9.834628 CAACACAATATGACGGTTTAATAAACT 57.165 29.630 14.61 0.00 41.14 2.66
616 618 7.755822 GGCAACACAATATGACGGTTTAATAAA 59.244 33.333 0.00 0.00 0.00 1.40
618 620 6.600032 AGGCAACACAATATGACGGTTTAATA 59.400 34.615 0.00 0.00 41.41 0.98
619 621 5.417580 AGGCAACACAATATGACGGTTTAAT 59.582 36.000 0.00 0.00 41.41 1.40
621 623 4.328536 AGGCAACACAATATGACGGTTTA 58.671 39.130 0.00 0.00 41.41 2.01
623 625 2.747446 GAGGCAACACAATATGACGGTT 59.253 45.455 0.00 0.00 41.41 4.44
624 626 2.290008 TGAGGCAACACAATATGACGGT 60.290 45.455 0.00 0.00 41.41 4.83
626 628 4.811024 ACTATGAGGCAACACAATATGACG 59.189 41.667 0.00 0.00 41.73 4.35
629 631 8.285394 GTGATAACTATGAGGCAACACAATATG 58.715 37.037 0.00 0.00 41.73 1.78
630 632 8.213679 AGTGATAACTATGAGGCAACACAATAT 58.786 33.333 0.00 0.00 41.73 1.28
631 633 7.495606 CAGTGATAACTATGAGGCAACACAATA 59.504 37.037 0.00 0.00 41.73 1.90
632 634 6.317140 CAGTGATAACTATGAGGCAACACAAT 59.683 38.462 0.00 0.00 41.73 2.71
633 635 5.643348 CAGTGATAACTATGAGGCAACACAA 59.357 40.000 0.00 0.00 41.73 3.33
634 636 5.046663 TCAGTGATAACTATGAGGCAACACA 60.047 40.000 0.00 0.00 42.92 3.72
635 637 5.419542 TCAGTGATAACTATGAGGCAACAC 58.580 41.667 0.00 0.00 41.41 3.32
636 638 5.675684 TCAGTGATAACTATGAGGCAACA 57.324 39.130 0.00 0.00 41.41 3.33
641 643 9.658799 TTCTTTTCTTCAGTGATAACTATGAGG 57.341 33.333 0.00 0.00 0.00 3.86
727 729 2.913590 GCTCTCGAAAAGAAGCAAATGC 59.086 45.455 0.00 0.00 42.49 3.56
728 730 4.151258 TGCTCTCGAAAAGAAGCAAATG 57.849 40.909 0.00 0.00 38.81 2.32
729 731 4.516698 TCTTGCTCTCGAAAAGAAGCAAAT 59.483 37.500 15.22 0.00 44.31 2.32
730 732 3.876914 TCTTGCTCTCGAAAAGAAGCAAA 59.123 39.130 15.22 7.80 44.31 3.68
731 733 3.466836 TCTTGCTCTCGAAAAGAAGCAA 58.533 40.909 14.24 14.24 43.61 3.91
732 734 3.062763 CTCTTGCTCTCGAAAAGAAGCA 58.937 45.455 0.00 0.00 39.45 3.91
733 735 2.414825 CCTCTTGCTCTCGAAAAGAAGC 59.585 50.000 0.00 0.00 35.23 3.86
734 736 2.414825 GCCTCTTGCTCTCGAAAAGAAG 59.585 50.000 0.00 1.26 36.87 2.85
735 737 2.224281 TGCCTCTTGCTCTCGAAAAGAA 60.224 45.455 0.00 0.00 42.00 2.52
737 739 1.731160 CTGCCTCTTGCTCTCGAAAAG 59.269 52.381 0.00 0.00 42.00 2.27
738 740 1.070758 ACTGCCTCTTGCTCTCGAAAA 59.929 47.619 0.00 0.00 42.00 2.29
739 741 0.681733 ACTGCCTCTTGCTCTCGAAA 59.318 50.000 0.00 0.00 42.00 3.46
740 742 1.474478 CTACTGCCTCTTGCTCTCGAA 59.526 52.381 0.00 0.00 42.00 3.71
743 745 3.360886 GCTACTGCCTCTTGCTCTC 57.639 57.895 0.00 0.00 42.00 3.20
756 758 2.128507 GCTGGACCGCTAGGCTACT 61.129 63.158 0.00 0.00 42.76 2.57
757 759 2.417936 GCTGGACCGCTAGGCTAC 59.582 66.667 0.00 0.00 42.76 3.58
758 760 2.838225 GGCTGGACCGCTAGGCTA 60.838 66.667 7.98 0.00 43.54 3.93
765 767 2.044946 AGAAATGGGCTGGACCGC 60.045 61.111 0.32 0.32 40.62 5.68
766 768 0.107017 ATGAGAAATGGGCTGGACCG 60.107 55.000 0.00 0.00 40.62 4.79
767 769 1.341383 ACATGAGAAATGGGCTGGACC 60.341 52.381 0.00 0.00 37.93 4.46
768 770 1.747355 CACATGAGAAATGGGCTGGAC 59.253 52.381 0.00 0.00 0.00 4.02
771 773 4.036027 GTCATACACATGAGAAATGGGCTG 59.964 45.833 0.00 0.00 41.87 4.85
772 774 4.202441 GTCATACACATGAGAAATGGGCT 58.798 43.478 0.00 0.00 41.87 5.19
773 775 3.947196 TGTCATACACATGAGAAATGGGC 59.053 43.478 0.00 0.58 41.87 5.36
774 776 5.649395 AGTTGTCATACACATGAGAAATGGG 59.351 40.000 0.00 0.00 43.70 4.00
775 777 6.372381 TGAGTTGTCATACACATGAGAAATGG 59.628 38.462 0.00 0.00 43.70 3.16
776 778 7.239271 GTGAGTTGTCATACACATGAGAAATG 58.761 38.462 0.00 1.91 43.70 2.32
778 780 5.405269 CGTGAGTTGTCATACACATGAGAAA 59.595 40.000 0.00 0.00 43.70 2.52
780 782 4.485163 CGTGAGTTGTCATACACATGAGA 58.515 43.478 0.00 0.00 41.87 3.27
781 783 3.061295 GCGTGAGTTGTCATACACATGAG 59.939 47.826 0.00 0.00 41.87 2.90
783 785 2.094258 GGCGTGAGTTGTCATACACATG 59.906 50.000 0.00 0.00 33.90 3.21
786 788 1.726791 CTGGCGTGAGTTGTCATACAC 59.273 52.381 0.00 0.00 34.36 2.90
787 789 1.939381 GCTGGCGTGAGTTGTCATACA 60.939 52.381 0.00 0.00 34.36 2.29
788 790 0.721718 GCTGGCGTGAGTTGTCATAC 59.278 55.000 0.00 0.00 34.36 2.39
789 791 0.391130 GGCTGGCGTGAGTTGTCATA 60.391 55.000 0.00 0.00 34.36 2.15
790 792 1.672356 GGCTGGCGTGAGTTGTCAT 60.672 57.895 0.00 0.00 34.36 3.06
792 794 3.050275 GGGCTGGCGTGAGTTGTC 61.050 66.667 0.00 0.00 0.00 3.18
794 796 2.360350 ATGGGCTGGCGTGAGTTG 60.360 61.111 0.00 0.00 0.00 3.16
796 798 2.809861 CTTGATGGGCTGGCGTGAGT 62.810 60.000 0.00 0.00 0.00 3.41
797 799 2.046023 TTGATGGGCTGGCGTGAG 60.046 61.111 0.00 0.00 0.00 3.51
799 801 2.046023 TCTTGATGGGCTGGCGTG 60.046 61.111 0.00 0.00 0.00 5.34
801 803 2.825836 GGTCTTGATGGGCTGGCG 60.826 66.667 0.00 0.00 0.00 5.69
802 804 2.440980 GGGTCTTGATGGGCTGGC 60.441 66.667 0.00 0.00 0.00 4.85
803 805 0.682209 CTTGGGTCTTGATGGGCTGG 60.682 60.000 0.00 0.00 0.00 4.85
804 806 0.329261 TCTTGGGTCTTGATGGGCTG 59.671 55.000 0.00 0.00 0.00 4.85
805 807 1.213926 GATCTTGGGTCTTGATGGGCT 59.786 52.381 0.00 0.00 0.00 5.19
806 808 1.685148 GATCTTGGGTCTTGATGGGC 58.315 55.000 0.00 0.00 0.00 5.36
807 809 1.565759 TGGATCTTGGGTCTTGATGGG 59.434 52.381 0.00 0.00 0.00 4.00
808 810 3.054139 TCTTGGATCTTGGGTCTTGATGG 60.054 47.826 0.00 0.00 0.00 3.51
809 811 4.226427 TCTTGGATCTTGGGTCTTGATG 57.774 45.455 0.00 0.00 0.00 3.07
810 812 4.934797 TTCTTGGATCTTGGGTCTTGAT 57.065 40.909 0.00 0.00 0.00 2.57
811 813 4.722526 TTTCTTGGATCTTGGGTCTTGA 57.277 40.909 0.00 0.00 0.00 3.02
812 814 5.990120 ATTTTCTTGGATCTTGGGTCTTG 57.010 39.130 0.00 0.00 0.00 3.02
813 815 5.481824 GGAATTTTCTTGGATCTTGGGTCTT 59.518 40.000 0.00 0.00 0.00 3.01
814 816 5.019470 GGAATTTTCTTGGATCTTGGGTCT 58.981 41.667 0.00 0.00 0.00 3.85
815 817 4.160439 GGGAATTTTCTTGGATCTTGGGTC 59.840 45.833 0.00 0.00 0.00 4.46
817 819 4.356436 AGGGAATTTTCTTGGATCTTGGG 58.644 43.478 0.00 0.00 0.00 4.12
821 823 5.760131 CAGGTAGGGAATTTTCTTGGATCT 58.240 41.667 0.00 0.00 0.00 2.75
822 824 4.339530 GCAGGTAGGGAATTTTCTTGGATC 59.660 45.833 0.00 0.00 0.00 3.36
823 825 4.264352 TGCAGGTAGGGAATTTTCTTGGAT 60.264 41.667 0.00 0.00 0.00 3.41
824 826 3.075283 TGCAGGTAGGGAATTTTCTTGGA 59.925 43.478 0.00 0.00 0.00 3.53
826 828 4.082125 AGTGCAGGTAGGGAATTTTCTTG 58.918 43.478 0.00 0.00 0.00 3.02
827 829 4.336280 GAGTGCAGGTAGGGAATTTTCTT 58.664 43.478 0.00 0.00 0.00 2.52
828 830 3.308473 GGAGTGCAGGTAGGGAATTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
829 831 3.017442 GGAGTGCAGGTAGGGAATTTTC 58.983 50.000 0.00 0.00 0.00 2.29
830 832 2.291605 GGGAGTGCAGGTAGGGAATTTT 60.292 50.000 0.00 0.00 0.00 1.82
831 833 1.285078 GGGAGTGCAGGTAGGGAATTT 59.715 52.381 0.00 0.00 0.00 1.82
833 835 0.988678 GGGGAGTGCAGGTAGGGAAT 60.989 60.000 0.00 0.00 0.00 3.01
834 836 1.615424 GGGGAGTGCAGGTAGGGAA 60.615 63.158 0.00 0.00 0.00 3.97
835 837 2.040606 GGGGAGTGCAGGTAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
836 838 3.470888 CGGGGAGTGCAGGTAGGG 61.471 72.222 0.00 0.00 0.00 3.53
837 839 2.683933 ACGGGGAGTGCAGGTAGG 60.684 66.667 0.00 0.00 0.00 3.18
838 840 2.579201 CACGGGGAGTGCAGGTAG 59.421 66.667 0.00 0.00 44.72 3.18
864 866 5.714806 GGACTGTGGAGGGATTTCATTAAAA 59.285 40.000 0.00 0.00 0.00 1.52
865 867 5.222233 TGGACTGTGGAGGGATTTCATTAAA 60.222 40.000 0.00 0.00 0.00 1.52
867 869 3.849574 TGGACTGTGGAGGGATTTCATTA 59.150 43.478 0.00 0.00 0.00 1.90
868 870 2.649312 TGGACTGTGGAGGGATTTCATT 59.351 45.455 0.00 0.00 0.00 2.57
869 871 2.025887 GTGGACTGTGGAGGGATTTCAT 60.026 50.000 0.00 0.00 0.00 2.57
870 872 1.351017 GTGGACTGTGGAGGGATTTCA 59.649 52.381 0.00 0.00 0.00 2.69
871 873 1.351017 TGTGGACTGTGGAGGGATTTC 59.649 52.381 0.00 0.00 0.00 2.17
874 876 1.201429 GGTGTGGACTGTGGAGGGAT 61.201 60.000 0.00 0.00 0.00 3.85
875 877 1.841556 GGTGTGGACTGTGGAGGGA 60.842 63.158 0.00 0.00 0.00 4.20
876 878 2.146724 TGGTGTGGACTGTGGAGGG 61.147 63.158 0.00 0.00 0.00 4.30
878 880 1.300931 CGTGGTGTGGACTGTGGAG 60.301 63.158 0.00 0.00 0.00 3.86
919 921 0.688087 GGGGAGTGGAGGTAGTGGAG 60.688 65.000 0.00 0.00 0.00 3.86
920 922 1.390926 GGGGAGTGGAGGTAGTGGA 59.609 63.158 0.00 0.00 0.00 4.02
921 923 1.689582 GGGGGAGTGGAGGTAGTGG 60.690 68.421 0.00 0.00 0.00 4.00
1057 3364 1.685517 CAGGAAGATCTCGCTCATGGA 59.314 52.381 0.00 0.00 0.00 3.41
1622 3951 2.038813 TCATCTGCCGTCCCCTGA 59.961 61.111 0.00 0.00 0.00 3.86
1752 4081 2.911484 CTCTGCTCACAGGGGAAATAC 58.089 52.381 0.00 0.00 44.59 1.89
1783 4112 2.092968 GCTCACCCATGTCATACTCCAA 60.093 50.000 0.00 0.00 0.00 3.53
1835 4164 4.087892 CCGCTCCCACCAGTCCAG 62.088 72.222 0.00 0.00 0.00 3.86
1836 4165 4.631740 TCCGCTCCCACCAGTCCA 62.632 66.667 0.00 0.00 0.00 4.02
1867 8435 4.059459 CAGCACCGTCGCGAACAC 62.059 66.667 12.06 0.00 36.85 3.32
1907 8481 0.612732 ACGGACACGGACCTCCATTA 60.613 55.000 0.00 0.00 46.48 1.90
1915 8489 0.381089 CTATCAGGACGGACACGGAC 59.619 60.000 0.00 0.00 46.48 4.79
1916 8490 0.253894 TCTATCAGGACGGACACGGA 59.746 55.000 0.00 0.00 46.48 4.69
1917 8491 1.100510 TTCTATCAGGACGGACACGG 58.899 55.000 0.00 0.00 46.48 4.94
1919 8493 3.242673 CGTAGTTCTATCAGGACGGACAC 60.243 52.174 0.00 0.00 0.00 3.67
1920 8494 2.941064 CGTAGTTCTATCAGGACGGACA 59.059 50.000 0.00 0.00 0.00 4.02
1961 8535 0.455633 CTTTGGTGCGAGCTCAATGC 60.456 55.000 15.40 9.86 43.29 3.56
1998 8572 1.522130 AACCACCGACACGTCCAAC 60.522 57.895 0.00 0.00 0.00 3.77
2102 8676 1.375098 GCTTGGCTCTCTGTCCATGC 61.375 60.000 3.89 3.89 43.22 4.06
2341 9192 5.092554 TCCACACAAGAAACAACTACTGA 57.907 39.130 0.00 0.00 0.00 3.41
2352 9203 2.886523 CAAGGCTGATTCCACACAAGAA 59.113 45.455 0.00 0.00 0.00 2.52
2399 9253 3.614092 ACAGGACCAACTATGCAATCAG 58.386 45.455 0.00 0.00 0.00 2.90
2416 9270 3.866651 AGCAGCTAGTGAAACATACAGG 58.133 45.455 0.00 0.00 41.43 4.00
2493 9432 1.555075 TGCTAGGGCCTACTCAACAAG 59.445 52.381 9.81 0.00 37.74 3.16
2577 9524 7.091443 CACTCTCTGTTCCTAAAATAAGACGT 58.909 38.462 0.00 0.00 0.00 4.34
2578 9525 7.091443 ACACTCTCTGTTCCTAAAATAAGACG 58.909 38.462 0.00 0.00 0.00 4.18
2579 9526 9.575783 CTACACTCTCTGTTCCTAAAATAAGAC 57.424 37.037 0.00 0.00 33.91 3.01
2580 9527 9.310449 ACTACACTCTCTGTTCCTAAAATAAGA 57.690 33.333 0.00 0.00 33.91 2.10
2581 9528 9.930693 AACTACACTCTCTGTTCCTAAAATAAG 57.069 33.333 0.00 0.00 33.91 1.73
2714 9680 2.370281 ACTGCAATACTGGAGACACG 57.630 50.000 0.00 0.00 43.42 4.49
2724 9690 6.985188 TTCAATCTGGAACTACTGCAATAC 57.015 37.500 0.00 0.00 0.00 1.89
2799 9765 6.179906 TGCCCCTCAAAACAATTTCAATTA 57.820 33.333 0.00 0.00 0.00 1.40
2857 9823 4.567159 CACCATAAGAAGACGAGGCTTAAC 59.433 45.833 0.00 0.00 0.00 2.01
2970 9939 2.623416 AGGCAGCAAAAGTAAACAGACC 59.377 45.455 0.00 0.00 0.00 3.85
3054 10023 1.276989 AGGCCAAAAGTGCATCCATTG 59.723 47.619 5.01 0.00 0.00 2.82
3083 10053 0.307760 AAACTCAAGTTTCGGCGCAG 59.692 50.000 10.83 5.07 44.15 5.18
3086 10056 2.372350 GAACAAACTCAAGTTTCGGCG 58.628 47.619 0.00 0.00 45.54 6.46
3090 10060 3.307782 TCGGACGAACAAACTCAAGTTTC 59.692 43.478 5.17 0.00 45.54 2.78
3121 10091 1.537348 GGCTACAGACACAACGTGACA 60.537 52.381 0.24 0.00 36.96 3.58
3122 10092 1.137513 GGCTACAGACACAACGTGAC 58.862 55.000 0.24 0.00 36.96 3.67
3124 10094 0.949105 GGGGCTACAGACACAACGTG 60.949 60.000 0.00 0.00 39.75 4.49
3162 10137 7.773690 ACTAATACCGCTTCCTTACATTCATTT 59.226 33.333 0.00 0.00 0.00 2.32
3214 10205 7.226325 AGGTACGTACATAAGTCTACACTCATC 59.774 40.741 26.02 3.27 29.93 2.92
3234 10225 5.404946 TCGTCCTCTGAAAATTTAGGTACG 58.595 41.667 15.85 15.85 35.68 3.67
3252 10243 5.707242 TCACCACATAGATATCTTCGTCC 57.293 43.478 11.25 0.00 0.00 4.79
3292 10283 6.371595 AATATAGAATGCCCTTCCAGAGAG 57.628 41.667 0.00 0.00 34.11 3.20
3340 10333 0.875728 CCGCAAACGACATGGGTTTA 59.124 50.000 14.37 0.00 43.93 2.01
3343 10336 2.671619 CCCGCAAACGACATGGGT 60.672 61.111 0.00 0.00 43.93 4.51
3369 10362 7.716998 AGCATCTCGGTCTTGATACAATTTATT 59.283 33.333 0.00 0.00 0.00 1.40
3478 10471 0.809636 TGCCCTATTGTGCGACATCG 60.810 55.000 0.00 0.00 43.27 3.84
3481 10474 1.093972 CATTGCCCTATTGTGCGACA 58.906 50.000 0.00 0.00 0.00 4.35
3515 10509 6.040955 CAGTCTATACTCCAACTCTAATGCCA 59.959 42.308 0.00 0.00 31.97 4.92
3529 10523 7.445945 ACAAAGAATATGGCCAGTCTATACTC 58.554 38.462 13.05 0.00 31.97 2.59
3538 10532 6.322201 AGGTTGAATACAAAGAATATGGCCAG 59.678 38.462 13.05 0.00 37.77 4.85
3539 10533 6.194235 AGGTTGAATACAAAGAATATGGCCA 58.806 36.000 8.56 8.56 37.77 5.36
3558 10613 7.920682 GGTGCAAAAGAATATGGTTATAGGTTG 59.079 37.037 0.00 0.00 0.00 3.77
3566 10621 5.245751 TGTCATGGTGCAAAAGAATATGGTT 59.754 36.000 0.00 0.00 0.00 3.67
3581 10636 4.635765 ACACTCCGATTATTTGTCATGGTG 59.364 41.667 0.00 0.00 0.00 4.17
3652 10708 7.431376 CAGCTCTGCATTACAAATACAAAGATG 59.569 37.037 0.00 0.00 0.00 2.90
3653 10709 7.337689 TCAGCTCTGCATTACAAATACAAAGAT 59.662 33.333 0.00 0.00 0.00 2.40
3673 10738 6.257849 TGTCATTTCGGTATATTTGTCAGCTC 59.742 38.462 0.00 0.00 0.00 4.09
3677 10742 9.476202 CTCTATGTCATTTCGGTATATTTGTCA 57.524 33.333 0.00 0.00 0.00 3.58
3678 10743 9.692749 TCTCTATGTCATTTCGGTATATTTGTC 57.307 33.333 0.00 0.00 0.00 3.18
3686 10751 7.822334 ACATGTTTTCTCTATGTCATTTCGGTA 59.178 33.333 0.00 0.00 29.55 4.02
3687 10752 6.655003 ACATGTTTTCTCTATGTCATTTCGGT 59.345 34.615 0.00 0.00 29.55 4.69
3688 10753 7.076842 ACATGTTTTCTCTATGTCATTTCGG 57.923 36.000 0.00 0.00 29.55 4.30
3726 10791 9.646427 TTTGTTTTCAAGCTGTGTATTTAACTT 57.354 25.926 0.00 0.00 41.09 2.66
3727 10792 9.301153 CTTTGTTTTCAAGCTGTGTATTTAACT 57.699 29.630 0.00 0.00 41.09 2.24
3728 10793 8.055986 GCTTTGTTTTCAAGCTGTGTATTTAAC 58.944 33.333 0.00 0.00 41.09 2.01
3729 10794 7.761704 TGCTTTGTTTTCAAGCTGTGTATTTAA 59.238 29.630 6.24 0.00 41.09 1.52
3730 10795 7.261325 TGCTTTGTTTTCAAGCTGTGTATTTA 58.739 30.769 6.24 0.00 41.09 1.40
3731 10796 6.105333 TGCTTTGTTTTCAAGCTGTGTATTT 58.895 32.000 6.24 0.00 41.09 1.40
3732 10797 5.659463 TGCTTTGTTTTCAAGCTGTGTATT 58.341 33.333 6.24 0.00 41.09 1.89
3733 10798 5.261209 TGCTTTGTTTTCAAGCTGTGTAT 57.739 34.783 6.24 0.00 41.09 2.29
3734 10799 4.710423 TGCTTTGTTTTCAAGCTGTGTA 57.290 36.364 6.24 0.00 41.09 2.90
3735 10800 3.591196 TGCTTTGTTTTCAAGCTGTGT 57.409 38.095 6.24 0.00 41.09 3.72
3736 10801 4.032104 GTCTTGCTTTGTTTTCAAGCTGTG 59.968 41.667 6.24 0.00 41.09 3.66
3737 10802 4.176271 GTCTTGCTTTGTTTTCAAGCTGT 58.824 39.130 6.24 0.00 41.09 4.40
3738 10803 4.175516 TGTCTTGCTTTGTTTTCAAGCTG 58.824 39.130 6.24 0.39 41.09 4.24
3739 10804 4.454728 TGTCTTGCTTTGTTTTCAAGCT 57.545 36.364 6.24 0.00 41.09 3.74
3740 10805 5.529014 TTTGTCTTGCTTTGTTTTCAAGC 57.471 34.783 0.00 0.00 41.09 4.01
3741 10806 7.901377 CAGATTTTGTCTTGCTTTGTTTTCAAG 59.099 33.333 0.00 0.00 36.70 3.02
3742 10807 7.601886 TCAGATTTTGTCTTGCTTTGTTTTCAA 59.398 29.630 0.00 0.00 34.00 2.69
3743 10808 7.095910 TCAGATTTTGTCTTGCTTTGTTTTCA 58.904 30.769 0.00 0.00 34.00 2.69
3744 10809 7.524294 TCAGATTTTGTCTTGCTTTGTTTTC 57.476 32.000 0.00 0.00 34.00 2.29
3745 10810 7.466320 GCATCAGATTTTGTCTTGCTTTGTTTT 60.466 33.333 0.00 0.00 34.00 2.43
3746 10811 6.018507 GCATCAGATTTTGTCTTGCTTTGTTT 60.019 34.615 0.00 0.00 34.00 2.83
3747 10812 5.464389 GCATCAGATTTTGTCTTGCTTTGTT 59.536 36.000 0.00 0.00 34.00 2.83
3748 10813 4.986659 GCATCAGATTTTGTCTTGCTTTGT 59.013 37.500 0.00 0.00 34.00 2.83
3749 10814 4.387862 GGCATCAGATTTTGTCTTGCTTTG 59.612 41.667 0.00 0.00 34.00 2.77
3750 10815 4.563061 GGCATCAGATTTTGTCTTGCTTT 58.437 39.130 0.00 0.00 34.00 3.51
3751 10816 3.366679 CGGCATCAGATTTTGTCTTGCTT 60.367 43.478 0.00 0.00 34.00 3.91
3752 10817 2.163010 CGGCATCAGATTTTGTCTTGCT 59.837 45.455 0.00 0.00 34.00 3.91
3753 10818 2.162208 TCGGCATCAGATTTTGTCTTGC 59.838 45.455 0.00 0.00 34.00 4.01
3754 10819 4.627611 ATCGGCATCAGATTTTGTCTTG 57.372 40.909 0.00 0.00 34.00 3.02
3755 10820 6.949352 ATTATCGGCATCAGATTTTGTCTT 57.051 33.333 0.00 0.00 34.00 3.01
3756 10821 7.445121 TCTATTATCGGCATCAGATTTTGTCT 58.555 34.615 0.00 0.00 37.80 3.41
3757 10822 7.658179 TCTATTATCGGCATCAGATTTTGTC 57.342 36.000 0.00 0.00 0.00 3.18
3758 10823 8.627208 AATCTATTATCGGCATCAGATTTTGT 57.373 30.769 0.00 0.00 30.55 2.83
3764 10829 9.942850 TGAATTTAATCTATTATCGGCATCAGA 57.057 29.630 0.00 0.00 0.00 3.27
3769 10834 8.946085 GGACATGAATTTAATCTATTATCGGCA 58.054 33.333 0.00 0.00 0.00 5.69
3770 10835 9.167311 AGGACATGAATTTAATCTATTATCGGC 57.833 33.333 0.00 0.00 0.00 5.54
3788 10853 5.439721 CAAGGTTCCATATTCAGGACATGA 58.560 41.667 0.00 0.00 34.19 3.07
3789 10854 4.581824 CCAAGGTTCCATATTCAGGACATG 59.418 45.833 0.00 0.00 34.19 3.21
3790 10855 4.796606 CCAAGGTTCCATATTCAGGACAT 58.203 43.478 0.00 0.00 34.19 3.06
3791 10856 3.624707 GCCAAGGTTCCATATTCAGGACA 60.625 47.826 0.00 0.00 34.19 4.02
3792 10857 2.952310 GCCAAGGTTCCATATTCAGGAC 59.048 50.000 0.00 0.00 34.19 3.85
3793 10858 2.091885 GGCCAAGGTTCCATATTCAGGA 60.092 50.000 0.00 0.00 0.00 3.86
3794 10859 2.091665 AGGCCAAGGTTCCATATTCAGG 60.092 50.000 5.01 0.00 0.00 3.86
3795 10860 3.303351 AGGCCAAGGTTCCATATTCAG 57.697 47.619 5.01 0.00 0.00 3.02
3796 10861 3.627237 GGAAGGCCAAGGTTCCATATTCA 60.627 47.826 14.99 0.00 41.76 2.57
3797 10862 2.959030 GGAAGGCCAAGGTTCCATATTC 59.041 50.000 14.99 1.07 41.76 1.75
3798 10863 2.314549 TGGAAGGCCAAGGTTCCATATT 59.685 45.455 17.90 0.00 45.93 1.28
3799 10864 1.929494 TGGAAGGCCAAGGTTCCATAT 59.071 47.619 17.90 0.00 45.93 1.78
3800 10865 1.377690 TGGAAGGCCAAGGTTCCATA 58.622 50.000 17.90 0.00 45.93 2.74
3801 10866 2.172900 TGGAAGGCCAAGGTTCCAT 58.827 52.632 17.90 0.00 45.93 3.41
3803 10868 0.609406 GACTGGAAGGCCAAGGTTCC 60.609 60.000 13.39 13.39 45.41 3.62
3804 10869 2.948386 GACTGGAAGGCCAAGGTTC 58.052 57.895 5.01 0.00 45.41 3.62
3813 10878 7.038659 CAGAGTAAGACAATAAGACTGGAAGG 58.961 42.308 0.00 0.00 39.30 3.46
3814 10879 7.831753 TCAGAGTAAGACAATAAGACTGGAAG 58.168 38.462 0.00 0.00 42.29 3.46
3815 10880 7.776618 TCAGAGTAAGACAATAAGACTGGAA 57.223 36.000 0.00 0.00 0.00 3.53
3816 10881 7.615757 TGATCAGAGTAAGACAATAAGACTGGA 59.384 37.037 0.00 0.00 0.00 3.86
3817 10882 7.704472 GTGATCAGAGTAAGACAATAAGACTGG 59.296 40.741 0.00 0.00 0.00 4.00
3818 10883 7.430793 CGTGATCAGAGTAAGACAATAAGACTG 59.569 40.741 0.00 0.00 0.00 3.51
3819 10884 7.337184 TCGTGATCAGAGTAAGACAATAAGACT 59.663 37.037 0.00 0.00 0.00 3.24
3820 10885 7.473366 TCGTGATCAGAGTAAGACAATAAGAC 58.527 38.462 0.00 0.00 0.00 3.01
3821 10886 7.625828 TCGTGATCAGAGTAAGACAATAAGA 57.374 36.000 0.00 0.00 0.00 2.10
3822 10887 7.971168 ACTTCGTGATCAGAGTAAGACAATAAG 59.029 37.037 0.00 0.00 0.00 1.73
3823 10888 7.827701 ACTTCGTGATCAGAGTAAGACAATAA 58.172 34.615 0.00 0.00 0.00 1.40
3824 10889 7.392494 ACTTCGTGATCAGAGTAAGACAATA 57.608 36.000 0.00 0.00 0.00 1.90
3825 10890 6.274157 ACTTCGTGATCAGAGTAAGACAAT 57.726 37.500 0.00 0.00 0.00 2.71
3826 10891 5.707242 ACTTCGTGATCAGAGTAAGACAA 57.293 39.130 0.00 0.00 0.00 3.18
3827 10892 5.707242 AACTTCGTGATCAGAGTAAGACA 57.293 39.130 0.00 0.00 0.00 3.41
3828 10893 6.150318 TCAAACTTCGTGATCAGAGTAAGAC 58.850 40.000 0.00 0.00 0.00 3.01
3829 10894 6.327279 TCAAACTTCGTGATCAGAGTAAGA 57.673 37.500 0.00 0.61 0.00 2.10
3830 10895 7.451429 CATTCAAACTTCGTGATCAGAGTAAG 58.549 38.462 0.00 0.23 0.00 2.34
3831 10896 6.128553 GCATTCAAACTTCGTGATCAGAGTAA 60.129 38.462 0.00 0.00 0.00 2.24
3832 10897 5.348724 GCATTCAAACTTCGTGATCAGAGTA 59.651 40.000 0.00 0.00 0.00 2.59
3833 10898 4.153117 GCATTCAAACTTCGTGATCAGAGT 59.847 41.667 0.00 0.00 0.00 3.24
3834 10899 4.391216 AGCATTCAAACTTCGTGATCAGAG 59.609 41.667 0.00 0.00 0.00 3.35
3835 10900 4.152938 CAGCATTCAAACTTCGTGATCAGA 59.847 41.667 0.00 0.00 0.00 3.27
3836 10901 4.400845 CAGCATTCAAACTTCGTGATCAG 58.599 43.478 0.00 0.00 0.00 2.90
3837 10902 3.365264 GCAGCATTCAAACTTCGTGATCA 60.365 43.478 0.00 0.00 0.00 2.92
3838 10903 3.120060 AGCAGCATTCAAACTTCGTGATC 60.120 43.478 0.00 0.00 0.00 2.92
3839 10904 2.816087 AGCAGCATTCAAACTTCGTGAT 59.184 40.909 0.00 0.00 0.00 3.06
3840 10905 2.031769 CAGCAGCATTCAAACTTCGTGA 60.032 45.455 0.00 0.00 0.00 4.35
3841 10906 2.287188 ACAGCAGCATTCAAACTTCGTG 60.287 45.455 0.00 0.00 0.00 4.35
3842 10907 1.949525 ACAGCAGCATTCAAACTTCGT 59.050 42.857 0.00 0.00 0.00 3.85
3843 10908 2.693797 ACAGCAGCATTCAAACTTCG 57.306 45.000 0.00 0.00 0.00 3.79
3844 10909 5.362556 TCTAACAGCAGCATTCAAACTTC 57.637 39.130 0.00 0.00 0.00 3.01
3845 10910 4.217118 CCTCTAACAGCAGCATTCAAACTT 59.783 41.667 0.00 0.00 0.00 2.66
3846 10911 3.755378 CCTCTAACAGCAGCATTCAAACT 59.245 43.478 0.00 0.00 0.00 2.66
3847 10912 3.671702 GCCTCTAACAGCAGCATTCAAAC 60.672 47.826 0.00 0.00 0.00 2.93
3848 10913 2.489329 GCCTCTAACAGCAGCATTCAAA 59.511 45.455 0.00 0.00 0.00 2.69
3849 10914 2.086869 GCCTCTAACAGCAGCATTCAA 58.913 47.619 0.00 0.00 0.00 2.69
3850 10915 1.003464 TGCCTCTAACAGCAGCATTCA 59.997 47.619 0.00 0.00 33.08 2.57
3851 10916 1.742761 TGCCTCTAACAGCAGCATTC 58.257 50.000 0.00 0.00 33.08 2.67
3852 10917 3.963733 TGCCTCTAACAGCAGCATT 57.036 47.368 0.00 0.00 33.08 3.56
3857 10922 0.610174 CAGACCTGCCTCTAACAGCA 59.390 55.000 0.00 0.00 37.46 4.41
3858 10923 3.450028 CAGACCTGCCTCTAACAGC 57.550 57.895 0.00 0.00 33.65 4.40
3876 10941 1.466360 CGCAACAATTGAGCCTGTAGC 60.466 52.381 13.59 3.25 44.25 3.58
3877 10942 2.076100 TCGCAACAATTGAGCCTGTAG 58.924 47.619 13.59 3.26 0.00 2.74
3878 10943 2.076100 CTCGCAACAATTGAGCCTGTA 58.924 47.619 13.59 0.59 0.00 2.74
3879 10944 0.877071 CTCGCAACAATTGAGCCTGT 59.123 50.000 13.59 0.00 0.00 4.00
3880 10945 1.159285 TCTCGCAACAATTGAGCCTG 58.841 50.000 13.59 9.61 0.00 4.85
3881 10946 2.012673 GATCTCGCAACAATTGAGCCT 58.987 47.619 13.59 0.30 0.00 4.58
3882 10947 1.739466 TGATCTCGCAACAATTGAGCC 59.261 47.619 13.59 3.62 0.00 4.70
3883 10948 2.674852 TCTGATCTCGCAACAATTGAGC 59.325 45.455 13.59 14.28 0.00 4.26
3884 10949 4.317909 CGATCTGATCTCGCAACAATTGAG 60.318 45.833 13.59 5.37 0.00 3.02
3885 10950 3.553105 CGATCTGATCTCGCAACAATTGA 59.447 43.478 13.59 0.00 0.00 2.57
3886 10951 3.858352 CGATCTGATCTCGCAACAATTG 58.142 45.455 15.16 3.24 0.00 2.32
3895 10960 4.241715 GCCAGCGATCTGATCTCG 57.758 61.111 15.16 6.22 42.95 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.