Multiple sequence alignment - TraesCS4A01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G018600 chr4A 100.000 3059 0 0 1 3059 12164036 12160978 0.000000e+00 5650.0
1 TraesCS4A01G018600 chr4A 79.560 1272 199 44 939 2172 12400362 12401610 0.000000e+00 852.0
2 TraesCS4A01G018600 chr4A 81.271 897 127 26 939 1803 12211077 12210190 0.000000e+00 688.0
3 TraesCS4A01G018600 chr4A 89.202 213 3 7 592 786 12132503 12132293 6.550000e-62 248.0
4 TraesCS4A01G018600 chr4A 72.993 822 140 41 1847 2635 12169047 12168275 2.390000e-51 213.0
5 TraesCS4A01G018600 chr4D 90.071 2246 145 33 874 3059 455652379 455654606 0.000000e+00 2841.0
6 TraesCS4A01G018600 chr4D 79.528 1270 203 39 939 2172 455530104 455531352 0.000000e+00 852.0
7 TraesCS4A01G018600 chr4D 81.132 901 124 30 939 1803 455599885 455600775 0.000000e+00 680.0
8 TraesCS4A01G018600 chr4D 84.778 427 37 13 2411 2811 455654789 455655213 1.320000e-108 403.0
9 TraesCS4A01G018600 chr4D 73.277 1190 219 60 1041 2182 455618700 455619838 8.120000e-91 344.0
10 TraesCS4A01G018600 chr4D 86.611 239 30 2 2822 3058 455655253 455655491 2.340000e-66 263.0
11 TraesCS4A01G018600 chr4D 74.669 604 100 30 1847 2432 455649038 455649606 5.140000e-53 219.0
12 TraesCS4A01G018600 chr4D 87.805 164 13 4 373 535 455651390 455651547 5.210000e-43 185.0
13 TraesCS4A01G018600 chr4D 86.264 182 10 8 526 694 455634401 455634580 1.870000e-42 183.0
14 TraesCS4A01G018600 chr4D 88.387 155 10 2 533 679 455652109 455652263 2.420000e-41 180.0
15 TraesCS4A01G018600 chr4D 81.347 193 34 2 1036 1227 452562989 452562798 4.080000e-34 156.0
16 TraesCS4A01G018600 chr4D 91.045 67 1 3 705 769 455634545 455634608 5.430000e-13 86.1
17 TraesCS4A01G018600 chr4D 89.091 55 1 4 730 781 455652239 455652291 2.550000e-06 63.9
18 TraesCS4A01G018600 chr4B 89.721 1936 123 33 932 2811 568714543 568716458 0.000000e+00 2403.0
19 TraesCS4A01G018600 chr4B 87.004 1108 100 18 1738 2811 569028419 569029516 0.000000e+00 1208.0
20 TraesCS4A01G018600 chr4B 90.947 718 52 4 1779 2492 24979904 24980612 0.000000e+00 953.0
21 TraesCS4A01G018600 chr4B 83.544 553 70 18 943 1484 568600274 568600816 5.890000e-137 497.0
22 TraesCS4A01G018600 chr4B 85.766 274 20 10 264 533 568713233 568713491 3.890000e-69 272.0
23 TraesCS4A01G018600 chr4B 84.766 256 25 5 2807 3059 568716483 568716727 8.470000e-61 244.0
24 TraesCS4A01G018600 chr4B 83.203 256 23 11 2807 3059 569029541 569029779 1.850000e-52 217.0
25 TraesCS4A01G018600 chr4B 76.066 422 68 19 1834 2244 568709749 568710148 4.030000e-44 189.0
26 TraesCS4A01G018600 chr4B 84.444 180 16 6 526 694 568673780 568673958 1.890000e-37 167.0
27 TraesCS4A01G018600 chr4B 81.347 193 34 2 1036 1227 565748339 565748148 4.080000e-34 156.0
28 TraesCS4A01G018600 chr4B 80.137 146 29 0 1289 1434 568709232 568709377 3.220000e-20 110.0
29 TraesCS4A01G018600 chr4B 80.000 135 25 2 1092 1225 568665292 568665425 6.980000e-17 99.0
30 TraesCS4A01G018600 chr4B 90.909 66 1 3 705 768 568673923 568673985 1.950000e-12 84.2
31 TraesCS4A01G018600 chr2B 91.356 752 49 9 1779 2525 384316306 384317046 0.000000e+00 1014.0
32 TraesCS4A01G018600 chr5B 90.526 190 12 4 1039 1225 521154649 521154463 2.360000e-61 246.0
33 TraesCS4A01G018600 chr5A 90.476 189 12 4 1040 1225 546698155 546697970 8.470000e-61 244.0
34 TraesCS4A01G018600 chr5A 95.000 40 1 1 2961 2999 502618400 502618361 9.160000e-06 62.1
35 TraesCS4A01G018600 chr6A 92.308 39 3 0 2987 3025 613609525 613609563 4.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G018600 chr4A 12160978 12164036 3058 True 5650.000000 5650 100.0000 1 3059 1 chr4A.!!$R2 3058
1 TraesCS4A01G018600 chr4A 12400362 12401610 1248 False 852.000000 852 79.5600 939 2172 1 chr4A.!!$F1 1233
2 TraesCS4A01G018600 chr4A 12210190 12211077 887 True 688.000000 688 81.2710 939 1803 1 chr4A.!!$R4 864
3 TraesCS4A01G018600 chr4A 12168275 12169047 772 True 213.000000 213 72.9930 1847 2635 1 chr4A.!!$R3 788
4 TraesCS4A01G018600 chr4D 455530104 455531352 1248 False 852.000000 852 79.5280 939 2172 1 chr4D.!!$F1 1233
5 TraesCS4A01G018600 chr4D 455599885 455600775 890 False 680.000000 680 81.1320 939 1803 1 chr4D.!!$F2 864
6 TraesCS4A01G018600 chr4D 455649038 455655491 6453 False 593.557143 2841 85.9160 373 3059 7 chr4D.!!$F5 2686
7 TraesCS4A01G018600 chr4D 455618700 455619838 1138 False 344.000000 344 73.2770 1041 2182 1 chr4D.!!$F3 1141
8 TraesCS4A01G018600 chr4B 24979904 24980612 708 False 953.000000 953 90.9470 1779 2492 1 chr4B.!!$F1 713
9 TraesCS4A01G018600 chr4B 569028419 569029779 1360 False 712.500000 1208 85.1035 1738 3059 2 chr4B.!!$F6 1321
10 TraesCS4A01G018600 chr4B 568709232 568716727 7495 False 643.600000 2403 83.2912 264 3059 5 chr4B.!!$F5 2795
11 TraesCS4A01G018600 chr4B 568600274 568600816 542 False 497.000000 497 83.5440 943 1484 1 chr4B.!!$F2 541
12 TraesCS4A01G018600 chr2B 384316306 384317046 740 False 1014.000000 1014 91.3560 1779 2525 1 chr2B.!!$F1 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.031178 CACAGGAAGCTGCCACAAAC 59.969 55.0 15.05 0.00 0.00 2.93 F
403 4210 0.106335 ATCGCTGCATCTCAGGAAGG 59.894 55.0 0.00 0.00 43.06 3.46 F
787 5278 0.106819 GAGAATGGGCCATCTGCAGT 60.107 55.0 21.48 1.88 43.89 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 6163 0.179076 CGCCATGGCAGTAGATGTGA 60.179 55.000 34.93 0.0 42.06 3.58 R
1960 6584 0.179124 GAGCTCGATGACCCTGTGTC 60.179 60.000 0.00 0.0 44.72 3.67 R
2059 6703 1.003118 TGTACAGCCCAGCCTTTGTAG 59.997 52.381 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.109431 TGTCCGCACCGTATCTACC 58.891 57.895 0.00 0.00 0.00 3.18
20 21 1.105759 GTCCGCACCGTATCTACCCT 61.106 60.000 0.00 0.00 0.00 4.34
21 22 0.820891 TCCGCACCGTATCTACCCTC 60.821 60.000 0.00 0.00 0.00 4.30
22 23 0.822532 CCGCACCGTATCTACCCTCT 60.823 60.000 0.00 0.00 0.00 3.69
23 24 1.544093 CCGCACCGTATCTACCCTCTA 60.544 57.143 0.00 0.00 0.00 2.43
26 27 3.220940 GCACCGTATCTACCCTCTACTT 58.779 50.000 0.00 0.00 0.00 2.24
27 28 3.004524 GCACCGTATCTACCCTCTACTTG 59.995 52.174 0.00 0.00 0.00 3.16
28 29 3.568853 CACCGTATCTACCCTCTACTTGG 59.431 52.174 0.00 0.00 0.00 3.61
29 30 3.461085 ACCGTATCTACCCTCTACTTGGA 59.539 47.826 0.00 0.00 0.00 3.53
30 31 4.079558 ACCGTATCTACCCTCTACTTGGAA 60.080 45.833 0.00 0.00 0.00 3.53
32 33 5.131784 CGTATCTACCCTCTACTTGGAACT 58.868 45.833 0.00 0.00 0.00 3.01
33 34 5.008811 CGTATCTACCCTCTACTTGGAACTG 59.991 48.000 0.00 0.00 0.00 3.16
35 36 5.006896 TCTACCCTCTACTTGGAACTGAA 57.993 43.478 0.00 0.00 0.00 3.02
37 38 2.303311 ACCCTCTACTTGGAACTGAAGC 59.697 50.000 0.00 0.00 0.00 3.86
38 39 2.569404 CCCTCTACTTGGAACTGAAGCT 59.431 50.000 0.00 0.00 0.00 3.74
39 40 3.769844 CCCTCTACTTGGAACTGAAGCTA 59.230 47.826 0.00 0.00 0.00 3.32
42 43 3.832490 TCTACTTGGAACTGAAGCTAGCA 59.168 43.478 18.83 0.00 0.00 3.49
43 44 3.492102 ACTTGGAACTGAAGCTAGCAA 57.508 42.857 18.83 0.66 0.00 3.91
44 45 4.026356 ACTTGGAACTGAAGCTAGCAAT 57.974 40.909 18.83 4.93 0.00 3.56
46 47 2.715046 TGGAACTGAAGCTAGCAATGG 58.285 47.619 18.83 6.85 0.00 3.16
58 59 2.177531 CAATGGCGTGTGCTGCTC 59.822 61.111 0.00 0.00 42.25 4.26
59 60 3.058160 AATGGCGTGTGCTGCTCC 61.058 61.111 0.00 0.00 42.25 4.70
60 61 3.848301 AATGGCGTGTGCTGCTCCA 62.848 57.895 0.00 1.16 42.25 3.86
61 62 3.633609 ATGGCGTGTGCTGCTCCAT 62.634 57.895 0.00 3.48 42.25 3.41
62 63 3.058160 GGCGTGTGCTGCTCCATT 61.058 61.111 0.00 0.00 42.25 3.16
63 64 2.629656 GGCGTGTGCTGCTCCATTT 61.630 57.895 0.00 0.00 42.25 2.32
64 65 1.443194 GCGTGTGCTGCTCCATTTG 60.443 57.895 0.00 0.00 38.39 2.32
65 66 1.443194 CGTGTGCTGCTCCATTTGC 60.443 57.895 0.00 0.00 0.00 3.68
66 67 1.859427 CGTGTGCTGCTCCATTTGCT 61.859 55.000 0.00 0.00 0.00 3.91
69 70 0.599558 GTGCTGCTCCATTTGCTTCA 59.400 50.000 0.00 0.00 0.00 3.02
70 71 0.599558 TGCTGCTCCATTTGCTTCAC 59.400 50.000 0.00 0.00 0.00 3.18
71 72 0.455633 GCTGCTCCATTTGCTTCACG 60.456 55.000 0.00 0.00 0.00 4.35
73 74 1.267806 CTGCTCCATTTGCTTCACGTT 59.732 47.619 0.00 0.00 0.00 3.99
75 76 1.266718 GCTCCATTTGCTTCACGTTCA 59.733 47.619 0.00 0.00 0.00 3.18
76 77 2.095059 GCTCCATTTGCTTCACGTTCAT 60.095 45.455 0.00 0.00 0.00 2.57
78 79 2.884012 TCCATTTGCTTCACGTTCATGT 59.116 40.909 0.00 0.00 0.00 3.21
80 81 4.699735 TCCATTTGCTTCACGTTCATGTAT 59.300 37.500 0.00 0.00 0.00 2.29
81 82 5.877564 TCCATTTGCTTCACGTTCATGTATA 59.122 36.000 0.00 0.00 0.00 1.47
84 85 2.857748 TGCTTCACGTTCATGTATAGCG 59.142 45.455 0.00 0.00 0.00 4.26
86 87 3.306166 GCTTCACGTTCATGTATAGCGTT 59.694 43.478 0.00 0.00 33.28 4.84
88 89 4.099380 TCACGTTCATGTATAGCGTTGA 57.901 40.909 0.00 0.00 33.28 3.18
89 90 4.487019 TCACGTTCATGTATAGCGTTGAA 58.513 39.130 0.00 0.00 33.28 2.69
90 91 5.106442 TCACGTTCATGTATAGCGTTGAAT 58.894 37.500 0.00 0.00 33.28 2.57
91 92 6.267070 TCACGTTCATGTATAGCGTTGAATA 58.733 36.000 0.00 0.00 33.28 1.75
92 93 6.416750 TCACGTTCATGTATAGCGTTGAATAG 59.583 38.462 0.00 0.00 33.28 1.73
95 96 7.057402 CGTTCATGTATAGCGTTGAATAGTTG 58.943 38.462 0.00 0.00 0.00 3.16
96 97 7.043656 CGTTCATGTATAGCGTTGAATAGTTGA 60.044 37.037 0.00 0.00 0.00 3.18
97 98 8.765219 GTTCATGTATAGCGTTGAATAGTTGAT 58.235 33.333 0.00 0.00 0.00 2.57
98 99 8.298030 TCATGTATAGCGTTGAATAGTTGATG 57.702 34.615 0.00 0.00 0.00 3.07
99 100 7.926018 TCATGTATAGCGTTGAATAGTTGATGT 59.074 33.333 0.00 0.00 0.00 3.06
100 101 7.463469 TGTATAGCGTTGAATAGTTGATGTG 57.537 36.000 0.00 0.00 0.00 3.21
103 104 2.787723 GCGTTGAATAGTTGATGTGCCG 60.788 50.000 0.00 0.00 0.00 5.69
104 105 2.670905 CGTTGAATAGTTGATGTGCCGA 59.329 45.455 0.00 0.00 0.00 5.54
105 106 3.124466 CGTTGAATAGTTGATGTGCCGAA 59.876 43.478 0.00 0.00 0.00 4.30
106 107 4.403453 GTTGAATAGTTGATGTGCCGAAC 58.597 43.478 0.00 0.00 0.00 3.95
107 108 3.937814 TGAATAGTTGATGTGCCGAACT 58.062 40.909 0.00 0.00 34.36 3.01
108 109 3.932710 TGAATAGTTGATGTGCCGAACTC 59.067 43.478 0.00 0.00 32.27 3.01
110 111 1.132640 GTTGATGTGCCGAACTCGC 59.867 57.895 0.00 0.00 38.18 5.03
111 112 1.005037 TTGATGTGCCGAACTCGCT 60.005 52.632 0.00 0.00 38.18 4.93
112 113 1.014044 TTGATGTGCCGAACTCGCTC 61.014 55.000 0.00 0.00 38.18 5.03
113 114 1.446099 GATGTGCCGAACTCGCTCA 60.446 57.895 0.00 0.00 38.18 4.26
114 115 0.807667 GATGTGCCGAACTCGCTCAT 60.808 55.000 9.30 9.30 38.18 2.90
115 116 0.391661 ATGTGCCGAACTCGCTCATT 60.392 50.000 0.00 0.00 38.18 2.57
116 117 0.245266 TGTGCCGAACTCGCTCATTA 59.755 50.000 0.00 0.00 38.18 1.90
117 118 0.924090 GTGCCGAACTCGCTCATTAG 59.076 55.000 0.00 0.00 38.18 1.73
118 119 0.806102 TGCCGAACTCGCTCATTAGC 60.806 55.000 0.00 0.00 45.86 3.09
134 135 2.413351 GCGCTCGGCAGTCATCTA 59.587 61.111 0.00 0.00 42.87 1.98
135 136 1.006805 GCGCTCGGCAGTCATCTAT 60.007 57.895 0.00 0.00 42.87 1.98
136 137 1.280886 GCGCTCGGCAGTCATCTATG 61.281 60.000 0.00 0.00 42.87 2.23
137 138 0.665670 CGCTCGGCAGTCATCTATGG 60.666 60.000 0.00 0.00 0.00 2.74
138 139 0.676184 GCTCGGCAGTCATCTATGGA 59.324 55.000 0.00 0.00 0.00 3.41
139 140 1.336702 GCTCGGCAGTCATCTATGGAG 60.337 57.143 0.00 0.00 0.00 3.86
147 148 1.302033 CATCTATGGAGCACCGGGC 60.302 63.158 6.32 6.61 45.30 6.13
148 149 2.520536 ATCTATGGAGCACCGGGCC 61.521 63.158 6.32 0.00 46.50 5.80
149 150 4.256180 CTATGGAGCACCGGGCCC 62.256 72.222 13.57 13.57 46.50 5.80
162 163 3.563512 GGCCCGATGGTCCATAGT 58.436 61.111 3.72 0.00 0.00 2.12
163 164 1.371558 GGCCCGATGGTCCATAGTC 59.628 63.158 3.72 0.00 0.00 2.59
164 165 1.006102 GCCCGATGGTCCATAGTCG 60.006 63.158 3.72 5.31 0.00 4.18
168 169 0.598562 CGATGGTCCATAGTCGGAGG 59.401 60.000 3.72 0.00 35.10 4.30
170 171 1.889829 GATGGTCCATAGTCGGAGGAG 59.110 57.143 3.72 0.00 35.10 3.69
171 172 0.106167 TGGTCCATAGTCGGAGGAGG 60.106 60.000 0.00 0.00 35.10 4.30
173 174 1.688627 GGTCCATAGTCGGAGGAGGTT 60.689 57.143 0.00 0.00 35.10 3.50
174 175 1.682323 GTCCATAGTCGGAGGAGGTTC 59.318 57.143 0.00 0.00 35.10 3.62
175 176 1.286849 TCCATAGTCGGAGGAGGTTCA 59.713 52.381 0.00 0.00 0.00 3.18
176 177 2.108168 CCATAGTCGGAGGAGGTTCAA 58.892 52.381 0.00 0.00 0.00 2.69
177 178 2.500098 CCATAGTCGGAGGAGGTTCAAA 59.500 50.000 0.00 0.00 0.00 2.69
178 179 3.055385 CCATAGTCGGAGGAGGTTCAAAA 60.055 47.826 0.00 0.00 0.00 2.44
180 181 3.790089 AGTCGGAGGAGGTTCAAAATT 57.210 42.857 0.00 0.00 0.00 1.82
181 182 3.412386 AGTCGGAGGAGGTTCAAAATTG 58.588 45.455 0.00 0.00 0.00 2.32
182 183 2.095212 GTCGGAGGAGGTTCAAAATTGC 60.095 50.000 0.00 0.00 0.00 3.56
183 184 2.162681 CGGAGGAGGTTCAAAATTGCT 58.837 47.619 0.00 0.00 0.00 3.91
184 185 2.558359 CGGAGGAGGTTCAAAATTGCTT 59.442 45.455 0.00 0.00 0.00 3.91
185 186 3.612479 CGGAGGAGGTTCAAAATTGCTTG 60.612 47.826 0.00 0.00 0.00 4.01
186 187 3.321968 GGAGGAGGTTCAAAATTGCTTGT 59.678 43.478 0.00 0.00 0.00 3.16
187 188 4.522789 GGAGGAGGTTCAAAATTGCTTGTA 59.477 41.667 0.00 0.00 0.00 2.41
188 189 5.453567 AGGAGGTTCAAAATTGCTTGTAC 57.546 39.130 0.00 0.00 0.00 2.90
189 190 4.280929 AGGAGGTTCAAAATTGCTTGTACC 59.719 41.667 9.51 9.51 43.46 3.34
190 191 4.038642 GGAGGTTCAAAATTGCTTGTACCA 59.961 41.667 16.47 0.00 44.77 3.25
191 192 4.944048 AGGTTCAAAATTGCTTGTACCAC 58.056 39.130 16.47 1.14 44.77 4.16
192 193 4.649218 AGGTTCAAAATTGCTTGTACCACT 59.351 37.500 16.47 0.36 44.77 4.00
193 194 5.128663 AGGTTCAAAATTGCTTGTACCACTT 59.871 36.000 16.47 0.00 44.77 3.16
194 195 5.462068 GGTTCAAAATTGCTTGTACCACTTC 59.538 40.000 11.67 0.00 42.95 3.01
195 196 5.195001 TCAAAATTGCTTGTACCACTTCC 57.805 39.130 0.00 0.00 0.00 3.46
196 197 4.646945 TCAAAATTGCTTGTACCACTTCCA 59.353 37.500 0.00 0.00 0.00 3.53
197 198 4.853924 AAATTGCTTGTACCACTTCCAG 57.146 40.909 0.00 0.00 0.00 3.86
199 200 0.400213 TGCTTGTACCACTTCCAGGG 59.600 55.000 0.00 0.00 0.00 4.45
201 202 1.073284 GCTTGTACCACTTCCAGGGAA 59.927 52.381 0.09 0.09 0.00 3.97
203 204 3.610911 CTTGTACCACTTCCAGGGAATC 58.389 50.000 0.39 0.00 33.28 2.52
204 205 2.626785 TGTACCACTTCCAGGGAATCA 58.373 47.619 0.39 0.00 33.28 2.57
205 206 2.304761 TGTACCACTTCCAGGGAATCAC 59.695 50.000 0.39 0.00 33.28 3.06
206 207 1.747444 ACCACTTCCAGGGAATCACT 58.253 50.000 0.39 0.00 33.28 3.41
208 209 2.447047 ACCACTTCCAGGGAATCACTTT 59.553 45.455 0.39 0.00 33.28 2.66
210 211 3.498481 CCACTTCCAGGGAATCACTTTCA 60.498 47.826 0.39 0.00 35.94 2.69
211 212 4.144297 CACTTCCAGGGAATCACTTTCAA 58.856 43.478 0.39 0.00 35.94 2.69
212 213 4.768968 CACTTCCAGGGAATCACTTTCAAT 59.231 41.667 0.39 0.00 35.94 2.57
213 214 5.012893 ACTTCCAGGGAATCACTTTCAATC 58.987 41.667 0.39 0.00 35.94 2.67
215 216 5.197224 TCCAGGGAATCACTTTCAATCAT 57.803 39.130 0.00 0.00 35.94 2.45
221 222 4.201950 GGAATCACTTTCAATCATGACGGG 60.202 45.833 0.00 0.00 35.94 5.28
222 223 3.694043 TCACTTTCAATCATGACGGGA 57.306 42.857 0.00 0.00 34.61 5.14
223 224 3.599343 TCACTTTCAATCATGACGGGAG 58.401 45.455 0.00 0.00 34.61 4.30
225 226 8.962912 GAATCACTTTCAATCATGACGGGAGTT 61.963 40.741 0.00 0.00 37.49 3.01
233 234 1.125093 ATGACGGGAGTTGACACCCA 61.125 55.000 15.49 0.00 45.68 4.51
234 235 1.301479 GACGGGAGTTGACACCCAC 60.301 63.158 15.49 6.33 45.68 4.61
235 236 1.755393 GACGGGAGTTGACACCCACT 61.755 60.000 15.49 1.31 45.68 4.00
237 238 0.602905 CGGGAGTTGACACCCACTTC 60.603 60.000 15.49 0.00 45.68 3.01
238 239 0.765510 GGGAGTTGACACCCACTTCT 59.234 55.000 11.21 0.00 44.88 2.85
239 240 1.143073 GGGAGTTGACACCCACTTCTT 59.857 52.381 11.21 0.00 44.88 2.52
240 241 2.222027 GGAGTTGACACCCACTTCTTG 58.778 52.381 0.00 0.00 0.00 3.02
241 242 2.222027 GAGTTGACACCCACTTCTTGG 58.778 52.381 0.00 0.00 46.47 3.61
242 243 0.668535 GTTGACACCCACTTCTTGGC 59.331 55.000 0.00 0.00 45.37 4.52
243 244 0.467290 TTGACACCCACTTCTTGGCC 60.467 55.000 0.00 0.00 45.37 5.36
244 245 1.603739 GACACCCACTTCTTGGCCC 60.604 63.158 0.00 0.00 45.37 5.80
245 246 2.351924 GACACCCACTTCTTGGCCCA 62.352 60.000 0.00 0.00 45.37 5.36
247 248 2.084930 ACCCACTTCTTGGCCCAGT 61.085 57.895 0.00 0.00 45.37 4.00
249 250 1.672356 CCACTTCTTGGCCCAGTCG 60.672 63.158 0.00 0.00 39.07 4.18
250 251 1.071471 CACTTCTTGGCCCAGTCGT 59.929 57.895 0.00 0.00 0.00 4.34
251 252 0.320374 CACTTCTTGGCCCAGTCGTA 59.680 55.000 0.00 0.00 0.00 3.43
252 253 1.053424 ACTTCTTGGCCCAGTCGTAA 58.947 50.000 0.00 0.00 0.00 3.18
253 254 1.418637 ACTTCTTGGCCCAGTCGTAAA 59.581 47.619 0.00 0.00 0.00 2.01
256 257 1.296056 CTTGGCCCAGTCGTAAACCG 61.296 60.000 0.00 0.00 38.13 4.44
257 258 1.756408 TTGGCCCAGTCGTAAACCGA 61.756 55.000 0.00 0.00 45.00 4.69
267 268 2.513753 TCGTAAACCGAGTAACAGGGA 58.486 47.619 0.00 0.00 41.60 4.20
268 269 2.228822 TCGTAAACCGAGTAACAGGGAC 59.771 50.000 0.00 0.00 41.60 4.46
269 270 2.030007 CGTAAACCGAGTAACAGGGACA 60.030 50.000 0.00 0.00 39.56 4.02
270 271 3.367703 CGTAAACCGAGTAACAGGGACAT 60.368 47.826 0.00 0.00 39.56 3.06
271 272 3.329929 AAACCGAGTAACAGGGACATC 57.670 47.619 0.00 0.00 0.00 3.06
272 273 1.933021 ACCGAGTAACAGGGACATCA 58.067 50.000 0.00 0.00 0.00 3.07
273 274 2.253610 ACCGAGTAACAGGGACATCAA 58.746 47.619 0.00 0.00 0.00 2.57
274 275 2.838202 ACCGAGTAACAGGGACATCAAT 59.162 45.455 0.00 0.00 0.00 2.57
276 277 3.118775 CCGAGTAACAGGGACATCAATCA 60.119 47.826 0.00 0.00 0.00 2.57
277 278 3.865745 CGAGTAACAGGGACATCAATCAC 59.134 47.826 0.00 0.00 0.00 3.06
278 279 3.861840 AGTAACAGGGACATCAATCACG 58.138 45.455 0.00 0.00 0.00 4.35
279 280 2.859165 AACAGGGACATCAATCACGT 57.141 45.000 0.00 0.00 0.00 4.49
280 281 3.973206 AACAGGGACATCAATCACGTA 57.027 42.857 0.00 0.00 0.00 3.57
281 282 4.487714 AACAGGGACATCAATCACGTAT 57.512 40.909 0.00 0.00 0.00 3.06
282 283 4.487714 ACAGGGACATCAATCACGTATT 57.512 40.909 0.00 0.00 0.00 1.89
283 284 4.191544 ACAGGGACATCAATCACGTATTG 58.808 43.478 9.92 9.92 45.47 1.90
284 285 3.002656 CAGGGACATCAATCACGTATTGC 59.997 47.826 10.87 0.00 44.03 3.56
285 286 3.118261 AGGGACATCAATCACGTATTGCT 60.118 43.478 10.87 2.27 44.03 3.91
286 287 3.627577 GGGACATCAATCACGTATTGCTT 59.372 43.478 10.87 2.28 44.03 3.91
288 289 4.496341 GGACATCAATCACGTATTGCTTGG 60.496 45.833 10.87 5.36 44.03 3.61
290 291 4.699735 ACATCAATCACGTATTGCTTGGAA 59.300 37.500 10.87 0.00 44.03 3.53
291 292 4.944962 TCAATCACGTATTGCTTGGAAG 57.055 40.909 10.87 0.00 44.03 3.46
292 293 4.323417 TCAATCACGTATTGCTTGGAAGT 58.677 39.130 10.87 0.00 44.03 3.01
293 294 4.759693 TCAATCACGTATTGCTTGGAAGTT 59.240 37.500 10.87 0.00 44.03 2.66
294 295 4.685169 ATCACGTATTGCTTGGAAGTTG 57.315 40.909 0.00 0.00 0.00 3.16
295 296 3.734463 TCACGTATTGCTTGGAAGTTGA 58.266 40.909 0.00 0.00 0.00 3.18
296 297 4.130857 TCACGTATTGCTTGGAAGTTGAA 58.869 39.130 0.00 0.00 0.00 2.69
297 298 4.576873 TCACGTATTGCTTGGAAGTTGAAA 59.423 37.500 0.00 0.00 0.00 2.69
298 299 4.675114 CACGTATTGCTTGGAAGTTGAAAC 59.325 41.667 0.00 0.00 0.00 2.78
299 300 4.226761 CGTATTGCTTGGAAGTTGAAACC 58.773 43.478 0.00 0.00 0.00 3.27
301 302 3.518634 TTGCTTGGAAGTTGAAACCAC 57.481 42.857 0.00 0.00 33.20 4.16
302 303 2.451490 TGCTTGGAAGTTGAAACCACA 58.549 42.857 0.00 0.00 33.20 4.17
303 304 2.426738 TGCTTGGAAGTTGAAACCACAG 59.573 45.455 0.00 0.00 33.20 3.66
305 306 3.287222 CTTGGAAGTTGAAACCACAGGA 58.713 45.455 0.00 0.00 33.20 3.86
306 307 3.374042 TGGAAGTTGAAACCACAGGAA 57.626 42.857 0.00 0.00 0.00 3.36
307 308 3.287222 TGGAAGTTGAAACCACAGGAAG 58.713 45.455 0.00 0.00 0.00 3.46
309 310 2.736670 AGTTGAAACCACAGGAAGCT 57.263 45.000 0.00 0.00 0.00 3.74
310 311 2.301346 AGTTGAAACCACAGGAAGCTG 58.699 47.619 0.00 0.00 0.00 4.24
312 313 0.823356 TGAAACCACAGGAAGCTGCC 60.823 55.000 0.73 0.73 0.00 4.85
313 314 0.823356 GAAACCACAGGAAGCTGCCA 60.823 55.000 15.05 0.00 0.00 4.92
315 316 2.113774 CCACAGGAAGCTGCCACA 59.886 61.111 15.05 0.00 0.00 4.17
317 318 1.108727 CCACAGGAAGCTGCCACAAA 61.109 55.000 15.05 0.00 0.00 2.83
318 319 0.031178 CACAGGAAGCTGCCACAAAC 59.969 55.000 15.05 0.00 0.00 2.93
320 321 1.531602 AGGAAGCTGCCACAAACCC 60.532 57.895 15.05 0.00 0.00 4.11
321 322 2.644992 GAAGCTGCCACAAACCCG 59.355 61.111 0.00 0.00 0.00 5.28
325 326 3.673484 CTGCCACAAACCCGCCAG 61.673 66.667 0.00 0.00 0.00 4.85
326 327 4.196778 TGCCACAAACCCGCCAGA 62.197 61.111 0.00 0.00 0.00 3.86
327 328 2.676471 GCCACAAACCCGCCAGAT 60.676 61.111 0.00 0.00 0.00 2.90
328 329 1.377987 GCCACAAACCCGCCAGATA 60.378 57.895 0.00 0.00 0.00 1.98
329 330 0.963355 GCCACAAACCCGCCAGATAA 60.963 55.000 0.00 0.00 0.00 1.75
330 331 1.540267 CCACAAACCCGCCAGATAAA 58.460 50.000 0.00 0.00 0.00 1.40
331 332 2.099405 CCACAAACCCGCCAGATAAAT 58.901 47.619 0.00 0.00 0.00 1.40
333 334 2.752354 CACAAACCCGCCAGATAAATCA 59.248 45.455 0.00 0.00 0.00 2.57
334 335 2.752903 ACAAACCCGCCAGATAAATCAC 59.247 45.455 0.00 0.00 0.00 3.06
336 337 0.814010 ACCCGCCAGATAAATCACGC 60.814 55.000 0.00 0.00 0.00 5.34
337 338 0.813610 CCCGCCAGATAAATCACGCA 60.814 55.000 0.00 0.00 0.00 5.24
339 340 0.583438 CGCCAGATAAATCACGCAGG 59.417 55.000 0.00 0.00 0.00 4.85
340 341 1.668419 GCCAGATAAATCACGCAGGT 58.332 50.000 0.00 0.00 0.00 4.00
341 342 2.017049 GCCAGATAAATCACGCAGGTT 58.983 47.619 0.00 0.00 0.00 3.50
342 343 3.202906 GCCAGATAAATCACGCAGGTTA 58.797 45.455 0.00 0.00 0.00 2.85
343 344 3.815401 GCCAGATAAATCACGCAGGTTAT 59.185 43.478 0.00 0.00 0.00 1.89
344 345 4.994852 GCCAGATAAATCACGCAGGTTATA 59.005 41.667 0.00 0.00 0.00 0.98
347 348 5.120830 CAGATAAATCACGCAGGTTATAGCC 59.879 44.000 0.00 0.00 0.00 3.93
350 351 0.899019 TCACGCAGGTTATAGCCACA 59.101 50.000 8.48 0.00 0.00 4.17
351 352 1.276705 TCACGCAGGTTATAGCCACAA 59.723 47.619 8.48 0.00 0.00 3.33
352 353 2.080693 CACGCAGGTTATAGCCACAAA 58.919 47.619 8.48 0.00 0.00 2.83
353 354 2.095853 CACGCAGGTTATAGCCACAAAG 59.904 50.000 8.48 0.00 0.00 2.77
365 366 2.907910 CCACAAAGGCATCTTCTTCG 57.092 50.000 0.00 0.00 31.82 3.79
366 367 2.154462 CCACAAAGGCATCTTCTTCGT 58.846 47.619 0.00 0.00 31.82 3.85
367 368 2.160417 CCACAAAGGCATCTTCTTCGTC 59.840 50.000 0.00 0.00 31.82 4.20
369 370 3.499918 CACAAAGGCATCTTCTTCGTCTT 59.500 43.478 0.00 0.00 31.82 3.01
370 371 4.690748 CACAAAGGCATCTTCTTCGTCTTA 59.309 41.667 0.00 0.00 31.82 2.10
371 372 5.352569 CACAAAGGCATCTTCTTCGTCTTAT 59.647 40.000 0.00 0.00 31.82 1.73
372 373 5.352569 ACAAAGGCATCTTCTTCGTCTTATG 59.647 40.000 0.00 0.00 31.82 1.90
373 374 5.344743 AAGGCATCTTCTTCGTCTTATGA 57.655 39.130 0.00 0.00 0.00 2.15
374 375 4.942852 AGGCATCTTCTTCGTCTTATGAG 58.057 43.478 0.00 0.00 0.00 2.90
375 376 4.404073 AGGCATCTTCTTCGTCTTATGAGT 59.596 41.667 0.00 0.00 0.00 3.41
376 377 4.742659 GGCATCTTCTTCGTCTTATGAGTC 59.257 45.833 0.00 0.00 0.00 3.36
377 378 4.439449 GCATCTTCTTCGTCTTATGAGTCG 59.561 45.833 0.00 0.00 36.07 4.18
403 4210 0.106335 ATCGCTGCATCTCAGGAAGG 59.894 55.000 0.00 0.00 43.06 3.46
404 4211 0.972471 TCGCTGCATCTCAGGAAGGA 60.972 55.000 0.00 0.00 43.06 3.36
405 4212 0.107993 CGCTGCATCTCAGGAAGGAA 60.108 55.000 0.00 0.00 43.06 3.36
406 4213 1.666054 GCTGCATCTCAGGAAGGAAG 58.334 55.000 0.00 0.00 43.06 3.46
435 4242 4.764679 TGTCGCAGAGCACAAATAAAAT 57.235 36.364 0.00 0.00 36.95 1.82
470 4278 4.306245 AGGACGTCCTGAACCCAA 57.694 55.556 35.89 0.00 46.55 4.12
471 4279 2.535224 AGGACGTCCTGAACCCAAA 58.465 52.632 35.89 0.00 46.55 3.28
476 4284 1.176527 CGTCCTGAACCCAAATGCAT 58.823 50.000 0.00 0.00 0.00 3.96
596 5085 3.425659 TCTATCGCTAGCCATCTGATGT 58.574 45.455 15.95 1.75 0.00 3.06
691 5182 7.969314 TGGCAACACTTTTATTTTTGAGAAAC 58.031 30.769 0.00 0.00 46.17 2.78
692 5183 7.604164 TGGCAACACTTTTATTTTTGAGAAACA 59.396 29.630 0.00 0.00 46.17 2.83
693 5184 8.611757 GGCAACACTTTTATTTTTGAGAAACAT 58.388 29.630 0.00 0.00 0.00 2.71
704 5195 8.667076 ATTTTTGAGAAACATTCTTTTGAGGG 57.333 30.769 0.00 0.00 40.87 4.30
705 5196 7.416964 TTTTGAGAAACATTCTTTTGAGGGA 57.583 32.000 0.00 0.00 40.87 4.20
706 5197 6.639632 TTGAGAAACATTCTTTTGAGGGAG 57.360 37.500 0.00 0.00 40.87 4.30
707 5198 5.940617 TGAGAAACATTCTTTTGAGGGAGA 58.059 37.500 0.00 0.00 40.87 3.71
708 5199 6.364701 TGAGAAACATTCTTTTGAGGGAGAA 58.635 36.000 0.00 0.00 40.87 2.87
709 5200 6.833416 TGAGAAACATTCTTTTGAGGGAGAAA 59.167 34.615 0.00 0.00 40.87 2.52
710 5201 7.341769 TGAGAAACATTCTTTTGAGGGAGAAAA 59.658 33.333 0.00 0.00 40.87 2.29
711 5202 8.255111 AGAAACATTCTTTTGAGGGAGAAAAT 57.745 30.769 0.00 0.00 36.36 1.82
712 5203 8.146412 AGAAACATTCTTTTGAGGGAGAAAATG 58.854 33.333 0.00 0.00 36.36 2.32
713 5204 6.350629 ACATTCTTTTGAGGGAGAAAATGG 57.649 37.500 0.00 0.00 35.69 3.16
714 5205 4.871933 TTCTTTTGAGGGAGAAAATGGC 57.128 40.909 0.00 0.00 0.00 4.40
715 5206 3.843422 TCTTTTGAGGGAGAAAATGGCA 58.157 40.909 0.00 0.00 0.00 4.92
716 5207 4.222336 TCTTTTGAGGGAGAAAATGGCAA 58.778 39.130 0.00 0.00 0.00 4.52
717 5208 4.039124 TCTTTTGAGGGAGAAAATGGCAAC 59.961 41.667 0.00 0.00 0.00 4.17
718 5209 9.051579 ATTCTTTTGAGGGAGAAAATGGCAACA 62.052 37.037 0.00 0.00 42.63 3.33
781 5272 4.170947 GGCAGAGAATGGGCCATC 57.829 61.111 21.48 13.28 46.92 3.51
782 5273 1.535685 GGCAGAGAATGGGCCATCT 59.464 57.895 21.48 17.87 46.92 2.90
783 5274 0.822532 GGCAGAGAATGGGCCATCTG 60.823 60.000 24.82 24.82 46.92 2.90
784 5275 2.716814 CAGAGAATGGGCCATCTGC 58.283 57.895 21.48 12.42 33.41 4.26
785 5276 0.106868 CAGAGAATGGGCCATCTGCA 60.107 55.000 21.48 0.00 43.89 4.41
786 5277 0.183014 AGAGAATGGGCCATCTGCAG 59.817 55.000 21.48 7.63 43.89 4.41
787 5278 0.106819 GAGAATGGGCCATCTGCAGT 60.107 55.000 21.48 1.88 43.89 4.40
790 5281 0.333993 AATGGGCCATCTGCAGTTCT 59.666 50.000 21.48 0.00 43.89 3.01
791 5282 0.395311 ATGGGCCATCTGCAGTTCTG 60.395 55.000 14.78 9.85 43.89 3.02
793 5284 1.676635 GGCCATCTGCAGTTCTGCA 60.677 57.895 23.14 23.14 43.89 4.41
794 5285 1.505353 GCCATCTGCAGTTCTGCAC 59.495 57.895 21.30 9.45 40.23 4.57
795 5286 0.959372 GCCATCTGCAGTTCTGCACT 60.959 55.000 21.30 10.49 40.23 4.40
797 5288 0.720027 CATCTGCAGTTCTGCACTCG 59.280 55.000 21.30 13.24 40.23 4.18
800 5291 1.287730 CTGCAGTTCTGCACTCGACC 61.288 60.000 21.30 0.00 40.23 4.79
801 5292 1.300931 GCAGTTCTGCACTCGACCA 60.301 57.895 18.26 0.00 30.92 4.02
802 5293 1.287730 GCAGTTCTGCACTCGACCAG 61.288 60.000 18.26 0.00 30.92 4.00
804 5295 0.827925 AGTTCTGCACTCGACCAGGA 60.828 55.000 0.00 0.00 0.00 3.86
807 5298 0.900182 TCTGCACTCGACCAGGATGT 60.900 55.000 0.00 0.00 0.00 3.06
808 5299 0.459237 CTGCACTCGACCAGGATGTC 60.459 60.000 0.00 0.00 0.00 3.06
809 5300 1.153549 GCACTCGACCAGGATGTCC 60.154 63.158 0.00 0.00 31.35 4.02
810 5301 1.517832 CACTCGACCAGGATGTCCC 59.482 63.158 0.00 0.00 36.42 4.46
840 5340 1.306226 CCTCTTCCCCTCGTCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
863 5368 2.505982 CCCAGCCCATCACTACCG 59.494 66.667 0.00 0.00 0.00 4.02
871 5376 1.553248 CCCATCACTACCGTTCTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
872 5377 2.027561 CCCATCACTACCGTTCTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
929 5460 1.009389 CGGCGCTTCTTCTCGACTTT 61.009 55.000 7.64 0.00 0.00 2.66
936 5467 0.671796 TCTTCTCGACTTTCACCGCA 59.328 50.000 0.00 0.00 0.00 5.69
1088 5651 0.179124 GAGATCTTCAAGCGCGTCCT 60.179 55.000 8.43 0.00 0.00 3.85
1264 5827 1.068434 GCGAGAAGGGGAGAATCAGAG 59.932 57.143 0.00 0.00 36.25 3.35
1271 5834 2.510382 AGGGGAGAATCAGAGACTACGA 59.490 50.000 0.00 0.00 36.25 3.43
1279 5842 3.851976 TCAGAGACTACGAAAAGGAGC 57.148 47.619 0.00 0.00 32.63 4.70
1435 6020 4.773117 GCGACCTCGTCACCGGTC 62.773 72.222 2.59 0.00 44.88 4.79
1487 6072 2.830104 CGCTGACATCATCTGGAATGA 58.170 47.619 0.00 0.00 0.00 2.57
1497 6082 5.440207 TCATCTGGAATGATTGGTCTGAA 57.560 39.130 0.00 0.00 0.00 3.02
1506 6109 5.705397 ATGATTGGTCTGAAGAGGATGAA 57.295 39.130 0.00 0.00 0.00 2.57
1539 6142 4.089239 TGGAATGCCGCGGTGCTA 62.089 61.111 28.70 11.53 36.79 3.49
1558 6161 2.820037 GTGCTAAGGACGGCTGCC 60.820 66.667 9.11 9.11 0.00 4.85
1560 6163 2.190578 GCTAAGGACGGCTGCCAT 59.809 61.111 20.29 1.94 0.00 4.40
1676 6294 3.623906 ATGGAGTGACATTGTCTCTGG 57.376 47.619 22.35 0.00 36.68 3.86
1715 6333 4.295119 GACGACGGGGCACACTGT 62.295 66.667 0.00 0.00 0.00 3.55
1843 6467 2.045926 ATGACCTGCCGTGGCTTC 60.046 61.111 12.84 6.61 42.51 3.86
1873 6497 2.038813 TGGAGGACGGGATGCTGA 59.961 61.111 0.00 0.00 0.00 4.26
1954 6578 0.391661 AACTGCAGTATGGGTGCGAG 60.392 55.000 22.01 0.00 44.35 5.03
1955 6579 1.219124 CTGCAGTATGGGTGCGAGT 59.781 57.895 5.25 0.00 44.35 4.18
1956 6580 1.079197 TGCAGTATGGGTGCGAGTG 60.079 57.895 0.00 0.00 44.35 3.51
1957 6581 1.079127 GCAGTATGGGTGCGAGTGT 60.079 57.895 0.00 0.00 35.86 3.55
1958 6582 1.361668 GCAGTATGGGTGCGAGTGTG 61.362 60.000 0.00 0.00 35.86 3.82
1959 6583 1.079127 AGTATGGGTGCGAGTGTGC 60.079 57.895 0.00 0.00 0.00 4.57
1960 6584 2.125713 TATGGGTGCGAGTGTGCG 60.126 61.111 0.00 0.00 37.81 5.34
1961 6585 2.641277 TATGGGTGCGAGTGTGCGA 61.641 57.895 0.00 0.00 37.81 5.10
2059 6703 2.221055 GTGTTGGTGTCATCTTCGTGAC 59.779 50.000 0.30 0.30 46.75 3.67
2126 6770 2.526873 AAGGTGCACGGGGAGACT 60.527 61.111 11.45 0.00 0.00 3.24
2217 6862 7.872163 TTTCAAACATGCACATTAAGTCATC 57.128 32.000 0.00 0.00 0.00 2.92
2307 6957 7.931578 TTTAGTTTGAGAGTTTCCAAGACAA 57.068 32.000 0.00 0.00 0.00 3.18
2326 6976 7.325660 AGACAATGTGCGATTTCTAATCATT 57.674 32.000 0.00 0.00 0.00 2.57
2424 7085 5.779241 TGGTTTTCTGGGTGATTCTAGAT 57.221 39.130 0.00 0.00 0.00 1.98
2535 8064 3.450457 ACCATGTTTTCTTTGGTGCTGAA 59.550 39.130 0.00 0.00 0.00 3.02
2538 8068 3.456280 TGTTTTCTTTGGTGCTGAATGC 58.544 40.909 0.00 0.00 43.25 3.56
2597 8127 4.532521 AGTTGTGTAGAATCAGCCTTAGGT 59.467 41.667 0.00 0.00 0.00 3.08
2643 8184 2.236489 CCTTCATGGTGTTGGGGATT 57.764 50.000 0.00 0.00 0.00 3.01
2650 8192 0.808755 GGTGTTGGGGATTTACGCTG 59.191 55.000 0.00 0.00 0.00 5.18
2656 8198 0.392461 GGGGATTTACGCTGCACTGA 60.392 55.000 0.00 0.00 0.00 3.41
2692 8234 1.202794 TGCTGTGCTGATCAGGTTCAA 60.203 47.619 23.89 4.70 33.98 2.69
2734 8276 0.548510 GCTTTACTGATCAGGCCCCT 59.451 55.000 26.08 7.80 0.00 4.79
2757 8299 4.775780 TGTAACACTAGGTCATTACTGCCT 59.224 41.667 0.00 0.00 34.56 4.75
2769 8311 6.877322 GGTCATTACTGCCTAGAACAGTTTAA 59.123 38.462 19.43 11.60 46.01 1.52
2771 8313 8.947115 GTCATTACTGCCTAGAACAGTTTAATT 58.053 33.333 19.43 1.60 46.01 1.40
2802 8344 5.734720 CTTTGCTCCAAGAGGATTAGTGTA 58.265 41.667 0.00 0.00 44.70 2.90
2822 8392 4.410883 TGTACCCATAACCTAGTCCCATTG 59.589 45.833 0.00 0.00 0.00 2.82
2823 8393 2.174854 ACCCATAACCTAGTCCCATTGC 59.825 50.000 0.00 0.00 0.00 3.56
2826 8396 3.136443 CCATAACCTAGTCCCATTGCTGA 59.864 47.826 0.00 0.00 0.00 4.26
2830 8400 5.450818 AACCTAGTCCCATTGCTGATAAA 57.549 39.130 0.00 0.00 0.00 1.40
2832 8402 6.018433 ACCTAGTCCCATTGCTGATAAAAT 57.982 37.500 0.00 0.00 0.00 1.82
2833 8403 6.435164 ACCTAGTCCCATTGCTGATAAAATT 58.565 36.000 0.00 0.00 0.00 1.82
2835 8405 8.058847 ACCTAGTCCCATTGCTGATAAAATTAA 58.941 33.333 0.00 0.00 0.00 1.40
2836 8406 8.352942 CCTAGTCCCATTGCTGATAAAATTAAC 58.647 37.037 0.00 0.00 0.00 2.01
2844 8417 9.859427 CATTGCTGATAAAATTAACTGAAGGAA 57.141 29.630 0.00 0.00 0.00 3.36
2876 8449 2.093869 TCCGTTGCTATGTACCTCCAAC 60.094 50.000 0.00 0.00 34.12 3.77
2884 8457 1.195442 TGTACCTCCAACGGGATGCA 61.195 55.000 0.00 0.00 43.91 3.96
2889 8462 1.442526 CTCCAACGGGATGCATGCTC 61.443 60.000 20.33 13.33 43.91 4.26
2890 8463 1.750018 CCAACGGGATGCATGCTCA 60.750 57.895 20.33 0.00 35.59 4.26
2898 8471 0.381089 GATGCATGCTCAGTTGCTCC 59.619 55.000 20.33 0.00 39.60 4.70
2906 8479 1.809651 GCTCAGTTGCTCCTATGGCTC 60.810 57.143 0.00 0.00 0.00 4.70
2918 8491 1.334869 CTATGGCTCGGTTGATTTGGC 59.665 52.381 0.00 0.00 0.00 4.52
2938 8511 4.710865 TGGCCAGCTGAAAATGAAATGATA 59.289 37.500 17.39 0.00 0.00 2.15
2959 8532 8.420374 TGATATTTTCTCGAAACATAGGTGAC 57.580 34.615 0.00 0.00 0.00 3.67
2964 8539 7.562454 TTTCTCGAAACATAGGTGACTTTTT 57.438 32.000 0.00 0.00 43.67 1.94
2966 8541 6.285224 TCTCGAAACATAGGTGACTTTTTGA 58.715 36.000 0.00 0.00 43.67 2.69
3019 8594 3.365565 CCCAGTTAATTGACGGAAAACCG 60.366 47.826 7.12 7.12 39.31 4.44
3025 8600 3.116531 GACGGAAAACCGGGCGAG 61.117 66.667 6.32 0.00 37.53 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.105759 AGGGTAGATACGGTGCGGAC 61.106 60.000 0.00 0.00 0.00 4.79
2 3 0.820891 GAGGGTAGATACGGTGCGGA 60.821 60.000 0.00 0.00 0.00 5.54
4 5 1.534595 GTAGAGGGTAGATACGGTGCG 59.465 57.143 0.00 0.00 0.00 5.34
5 6 2.861274 AGTAGAGGGTAGATACGGTGC 58.139 52.381 0.00 0.00 0.00 5.01
6 7 3.568853 CCAAGTAGAGGGTAGATACGGTG 59.431 52.174 0.00 0.00 0.00 4.94
7 8 3.461085 TCCAAGTAGAGGGTAGATACGGT 59.539 47.826 0.00 0.00 0.00 4.83
11 12 6.337185 TCAGTTCCAAGTAGAGGGTAGATA 57.663 41.667 0.00 0.00 0.00 1.98
12 13 5.208294 TCAGTTCCAAGTAGAGGGTAGAT 57.792 43.478 0.00 0.00 0.00 1.98
13 14 4.669866 TCAGTTCCAAGTAGAGGGTAGA 57.330 45.455 0.00 0.00 0.00 2.59
15 16 3.514309 GCTTCAGTTCCAAGTAGAGGGTA 59.486 47.826 0.00 0.00 0.00 3.69
16 17 2.303311 GCTTCAGTTCCAAGTAGAGGGT 59.697 50.000 0.00 0.00 0.00 4.34
18 19 3.971245 AGCTTCAGTTCCAAGTAGAGG 57.029 47.619 0.00 0.00 0.00 3.69
20 21 3.832490 TGCTAGCTTCAGTTCCAAGTAGA 59.168 43.478 17.23 0.00 0.00 2.59
21 22 4.193826 TGCTAGCTTCAGTTCCAAGTAG 57.806 45.455 17.23 0.00 0.00 2.57
22 23 4.617253 TTGCTAGCTTCAGTTCCAAGTA 57.383 40.909 17.23 0.00 0.00 2.24
23 24 3.492102 TTGCTAGCTTCAGTTCCAAGT 57.508 42.857 17.23 0.00 0.00 3.16
26 27 2.715046 CCATTGCTAGCTTCAGTTCCA 58.285 47.619 17.23 0.00 0.00 3.53
27 28 1.403323 GCCATTGCTAGCTTCAGTTCC 59.597 52.381 17.23 0.00 33.53 3.62
28 29 1.063174 CGCCATTGCTAGCTTCAGTTC 59.937 52.381 17.23 0.00 34.43 3.01
29 30 1.089920 CGCCATTGCTAGCTTCAGTT 58.910 50.000 17.23 0.00 34.43 3.16
30 31 0.036010 ACGCCATTGCTAGCTTCAGT 60.036 50.000 17.23 5.85 34.43 3.41
32 33 0.321564 ACACGCCATTGCTAGCTTCA 60.322 50.000 17.23 0.00 34.43 3.02
33 34 0.097674 CACACGCCATTGCTAGCTTC 59.902 55.000 17.23 0.00 34.43 3.86
35 36 2.401766 GCACACGCCATTGCTAGCT 61.402 57.895 17.23 0.00 35.74 3.32
42 43 3.058160 GGAGCAGCACACGCCATT 61.058 61.111 0.00 0.00 39.83 3.16
43 44 3.633609 ATGGAGCAGCACACGCCAT 62.634 57.895 0.00 3.61 42.12 4.40
44 45 3.848301 AATGGAGCAGCACACGCCA 62.848 57.895 0.00 0.00 41.43 5.69
46 47 1.443194 CAAATGGAGCAGCACACGC 60.443 57.895 0.00 0.00 38.99 5.34
48 49 0.316204 AAGCAAATGGAGCAGCACAC 59.684 50.000 0.00 0.00 0.00 3.82
49 50 0.599558 GAAGCAAATGGAGCAGCACA 59.400 50.000 0.00 0.00 0.00 4.57
50 51 0.599558 TGAAGCAAATGGAGCAGCAC 59.400 50.000 0.00 0.00 0.00 4.40
51 52 0.599558 GTGAAGCAAATGGAGCAGCA 59.400 50.000 0.00 0.00 0.00 4.41
52 53 0.455633 CGTGAAGCAAATGGAGCAGC 60.456 55.000 0.00 0.00 0.00 5.25
53 54 0.877071 ACGTGAAGCAAATGGAGCAG 59.123 50.000 0.00 0.00 0.00 4.24
54 55 1.266718 GAACGTGAAGCAAATGGAGCA 59.733 47.619 0.00 0.00 0.00 4.26
55 56 1.266718 TGAACGTGAAGCAAATGGAGC 59.733 47.619 0.00 0.00 0.00 4.70
58 59 3.287312 ACATGAACGTGAAGCAAATGG 57.713 42.857 0.00 0.00 0.00 3.16
59 60 5.678483 GCTATACATGAACGTGAAGCAAATG 59.322 40.000 0.00 0.00 0.00 2.32
60 61 5.502382 CGCTATACATGAACGTGAAGCAAAT 60.502 40.000 0.00 0.00 0.00 2.32
61 62 4.201676 CGCTATACATGAACGTGAAGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
62 63 3.305897 CGCTATACATGAACGTGAAGCAA 59.694 43.478 0.00 0.00 0.00 3.91
63 64 2.857748 CGCTATACATGAACGTGAAGCA 59.142 45.455 0.00 0.00 0.00 3.91
64 65 2.858344 ACGCTATACATGAACGTGAAGC 59.142 45.455 0.00 6.04 35.33 3.86
65 66 4.561213 TCAACGCTATACATGAACGTGAAG 59.439 41.667 0.00 0.00 37.01 3.02
66 67 4.487019 TCAACGCTATACATGAACGTGAA 58.513 39.130 0.00 0.00 37.01 3.18
69 70 6.270815 ACTATTCAACGCTATACATGAACGT 58.729 36.000 0.00 0.00 38.88 3.99
70 71 6.749216 ACTATTCAACGCTATACATGAACG 57.251 37.500 0.00 0.00 34.88 3.95
71 72 8.126871 TCAACTATTCAACGCTATACATGAAC 57.873 34.615 0.00 0.00 34.88 3.18
73 74 7.926018 ACATCAACTATTCAACGCTATACATGA 59.074 33.333 0.00 0.00 0.00 3.07
75 76 7.307396 GCACATCAACTATTCAACGCTATACAT 60.307 37.037 0.00 0.00 0.00 2.29
76 77 6.019075 GCACATCAACTATTCAACGCTATACA 60.019 38.462 0.00 0.00 0.00 2.29
78 79 5.465390 GGCACATCAACTATTCAACGCTATA 59.535 40.000 0.00 0.00 0.00 1.31
80 81 3.621268 GGCACATCAACTATTCAACGCTA 59.379 43.478 0.00 0.00 0.00 4.26
81 82 2.420022 GGCACATCAACTATTCAACGCT 59.580 45.455 0.00 0.00 0.00 5.07
84 85 4.154195 AGTTCGGCACATCAACTATTCAAC 59.846 41.667 0.00 0.00 0.00 3.18
86 87 3.932710 GAGTTCGGCACATCAACTATTCA 59.067 43.478 0.00 0.00 30.32 2.57
88 89 2.930040 CGAGTTCGGCACATCAACTATT 59.070 45.455 0.00 0.00 35.37 1.73
89 90 2.540515 CGAGTTCGGCACATCAACTAT 58.459 47.619 0.00 0.00 35.37 2.12
90 91 1.990799 CGAGTTCGGCACATCAACTA 58.009 50.000 0.00 0.00 35.37 2.24
91 92 1.291877 GCGAGTTCGGCACATCAACT 61.292 55.000 3.50 0.00 40.23 3.16
92 93 1.132640 GCGAGTTCGGCACATCAAC 59.867 57.895 3.50 0.00 40.23 3.18
95 96 0.807667 ATGAGCGAGTTCGGCACATC 60.808 55.000 3.50 0.00 40.23 3.06
96 97 0.391661 AATGAGCGAGTTCGGCACAT 60.392 50.000 3.50 3.95 40.23 3.21
97 98 0.245266 TAATGAGCGAGTTCGGCACA 59.755 50.000 3.50 1.88 40.23 4.57
98 99 0.924090 CTAATGAGCGAGTTCGGCAC 59.076 55.000 3.50 0.00 40.23 5.01
99 100 0.806102 GCTAATGAGCGAGTTCGGCA 60.806 55.000 3.50 0.00 39.39 5.69
100 101 1.927931 GCTAATGAGCGAGTTCGGC 59.072 57.895 3.50 0.00 39.39 5.54
110 111 1.211818 GACTGCCGAGCGCTAATGAG 61.212 60.000 11.50 7.20 38.78 2.90
111 112 1.226974 GACTGCCGAGCGCTAATGA 60.227 57.895 11.50 0.00 38.78 2.57
112 113 0.877649 ATGACTGCCGAGCGCTAATG 60.878 55.000 11.50 2.79 38.78 1.90
113 114 0.598680 GATGACTGCCGAGCGCTAAT 60.599 55.000 11.50 0.00 38.78 1.73
114 115 1.226974 GATGACTGCCGAGCGCTAA 60.227 57.895 11.50 0.00 38.78 3.09
115 116 0.818040 TAGATGACTGCCGAGCGCTA 60.818 55.000 11.50 0.00 38.78 4.26
116 117 1.459455 ATAGATGACTGCCGAGCGCT 61.459 55.000 11.27 11.27 38.78 5.92
117 118 1.006805 ATAGATGACTGCCGAGCGC 60.007 57.895 0.00 0.00 38.31 5.92
118 119 0.665670 CCATAGATGACTGCCGAGCG 60.666 60.000 0.00 0.00 0.00 5.03
119 120 0.676184 TCCATAGATGACTGCCGAGC 59.324 55.000 0.00 0.00 0.00 5.03
124 125 1.871408 CGGTGCTCCATAGATGACTGC 60.871 57.143 5.52 0.00 0.00 4.40
126 127 1.043816 CCGGTGCTCCATAGATGACT 58.956 55.000 5.52 0.00 0.00 3.41
127 128 0.034059 CCCGGTGCTCCATAGATGAC 59.966 60.000 0.00 0.00 0.00 3.06
128 129 1.758440 GCCCGGTGCTCCATAGATGA 61.758 60.000 0.00 0.00 36.87 2.92
129 130 1.302033 GCCCGGTGCTCCATAGATG 60.302 63.158 0.00 0.00 36.87 2.90
130 131 2.520536 GGCCCGGTGCTCCATAGAT 61.521 63.158 13.58 0.00 40.92 1.98
131 132 3.161450 GGCCCGGTGCTCCATAGA 61.161 66.667 13.58 0.00 40.92 1.98
132 133 4.256180 GGGCCCGGTGCTCCATAG 62.256 72.222 5.69 0.00 40.92 2.23
149 150 0.598562 CCTCCGACTATGGACCATCG 59.401 60.000 11.17 9.71 33.48 3.84
150 151 1.889829 CTCCTCCGACTATGGACCATC 59.110 57.143 11.17 0.00 33.48 3.51
152 153 0.106167 CCTCCTCCGACTATGGACCA 60.106 60.000 0.00 0.00 33.48 4.02
153 154 0.106116 ACCTCCTCCGACTATGGACC 60.106 60.000 0.00 0.00 33.48 4.46
155 156 1.286849 TGAACCTCCTCCGACTATGGA 59.713 52.381 0.00 0.00 36.37 3.41
156 157 1.776662 TGAACCTCCTCCGACTATGG 58.223 55.000 0.00 0.00 0.00 2.74
157 158 3.887621 TTTGAACCTCCTCCGACTATG 57.112 47.619 0.00 0.00 0.00 2.23
159 160 4.575885 CAATTTTGAACCTCCTCCGACTA 58.424 43.478 0.00 0.00 0.00 2.59
160 161 3.412386 CAATTTTGAACCTCCTCCGACT 58.588 45.455 0.00 0.00 0.00 4.18
161 162 2.095212 GCAATTTTGAACCTCCTCCGAC 60.095 50.000 0.00 0.00 0.00 4.79
162 163 2.159382 GCAATTTTGAACCTCCTCCGA 58.841 47.619 0.00 0.00 0.00 4.55
163 164 2.162681 AGCAATTTTGAACCTCCTCCG 58.837 47.619 0.00 0.00 0.00 4.63
164 165 3.321968 ACAAGCAATTTTGAACCTCCTCC 59.678 43.478 0.00 0.00 0.00 4.30
166 167 4.280929 GGTACAAGCAATTTTGAACCTCCT 59.719 41.667 0.00 0.00 0.00 3.69
167 168 4.038642 TGGTACAAGCAATTTTGAACCTCC 59.961 41.667 0.00 0.00 31.92 4.30
168 169 4.982295 GTGGTACAAGCAATTTTGAACCTC 59.018 41.667 0.00 0.00 44.16 3.85
170 171 4.944048 AGTGGTACAAGCAATTTTGAACC 58.056 39.130 0.00 0.00 44.16 3.62
171 172 5.462068 GGAAGTGGTACAAGCAATTTTGAAC 59.538 40.000 0.00 0.00 44.16 3.18
173 174 4.646945 TGGAAGTGGTACAAGCAATTTTGA 59.353 37.500 0.00 0.00 44.16 2.69
174 175 4.942852 TGGAAGTGGTACAAGCAATTTTG 58.057 39.130 0.00 0.00 44.16 2.44
175 176 4.039124 CCTGGAAGTGGTACAAGCAATTTT 59.961 41.667 0.00 0.00 44.16 1.82
176 177 3.573967 CCTGGAAGTGGTACAAGCAATTT 59.426 43.478 0.00 0.00 44.16 1.82
177 178 3.157087 CCTGGAAGTGGTACAAGCAATT 58.843 45.455 0.00 0.00 44.16 2.32
178 179 2.555227 CCCTGGAAGTGGTACAAGCAAT 60.555 50.000 0.00 0.00 44.16 3.56
180 181 0.400213 CCCTGGAAGTGGTACAAGCA 59.600 55.000 0.00 0.00 44.16 3.91
181 182 0.690762 TCCCTGGAAGTGGTACAAGC 59.309 55.000 0.00 0.00 44.16 4.01
182 183 3.009033 TGATTCCCTGGAAGTGGTACAAG 59.991 47.826 4.72 0.00 36.44 3.16
183 184 2.983192 TGATTCCCTGGAAGTGGTACAA 59.017 45.455 4.72 0.00 36.44 2.41
184 185 2.304761 GTGATTCCCTGGAAGTGGTACA 59.695 50.000 4.72 0.00 37.56 2.90
185 186 2.572104 AGTGATTCCCTGGAAGTGGTAC 59.428 50.000 4.72 0.07 37.56 3.34
186 187 2.915869 AGTGATTCCCTGGAAGTGGTA 58.084 47.619 4.72 0.00 37.56 3.25
187 188 1.747444 AGTGATTCCCTGGAAGTGGT 58.253 50.000 4.72 0.00 37.56 4.16
188 189 2.887151 AAGTGATTCCCTGGAAGTGG 57.113 50.000 4.72 0.00 37.56 4.00
189 190 3.754965 TGAAAGTGATTCCCTGGAAGTG 58.245 45.455 4.72 0.00 37.56 3.16
190 191 4.453480 TTGAAAGTGATTCCCTGGAAGT 57.547 40.909 4.72 0.00 37.56 3.01
191 192 5.012239 TGATTGAAAGTGATTCCCTGGAAG 58.988 41.667 4.72 0.00 37.56 3.46
192 193 4.996793 TGATTGAAAGTGATTCCCTGGAA 58.003 39.130 0.22 0.22 37.22 3.53
193 194 4.656100 TGATTGAAAGTGATTCCCTGGA 57.344 40.909 0.00 0.00 37.22 3.86
194 195 4.951715 TCATGATTGAAAGTGATTCCCTGG 59.048 41.667 0.00 0.00 37.22 4.45
195 196 5.448225 CGTCATGATTGAAAGTGATTCCCTG 60.448 44.000 0.00 0.00 37.22 4.45
196 197 4.637534 CGTCATGATTGAAAGTGATTCCCT 59.362 41.667 0.00 0.00 37.22 4.20
197 198 4.201950 CCGTCATGATTGAAAGTGATTCCC 60.202 45.833 0.00 0.00 37.22 3.97
199 200 4.635765 TCCCGTCATGATTGAAAGTGATTC 59.364 41.667 0.00 0.00 38.60 2.52
201 202 4.194640 CTCCCGTCATGATTGAAAGTGAT 58.805 43.478 0.00 0.00 32.48 3.06
203 204 3.338249 ACTCCCGTCATGATTGAAAGTG 58.662 45.455 0.00 0.00 32.48 3.16
204 205 3.703001 ACTCCCGTCATGATTGAAAGT 57.297 42.857 0.00 0.00 32.48 2.66
205 206 4.002982 TCAACTCCCGTCATGATTGAAAG 58.997 43.478 0.00 0.00 32.48 2.62
206 207 3.751175 GTCAACTCCCGTCATGATTGAAA 59.249 43.478 8.38 0.00 32.48 2.69
208 209 2.301583 TGTCAACTCCCGTCATGATTGA 59.698 45.455 0.00 0.41 0.00 2.57
210 211 2.615493 GGTGTCAACTCCCGTCATGATT 60.615 50.000 0.00 0.00 0.00 2.57
211 212 1.066143 GGTGTCAACTCCCGTCATGAT 60.066 52.381 0.00 0.00 0.00 2.45
212 213 0.320374 GGTGTCAACTCCCGTCATGA 59.680 55.000 0.00 0.00 0.00 3.07
213 214 0.673644 GGGTGTCAACTCCCGTCATG 60.674 60.000 4.61 0.00 39.56 3.07
215 216 3.144285 GGGTGTCAACTCCCGTCA 58.856 61.111 4.61 0.00 39.56 4.35
221 222 2.222027 CCAAGAAGTGGGTGTCAACTC 58.778 52.381 0.00 0.00 44.64 3.01
222 223 2.348411 CCAAGAAGTGGGTGTCAACT 57.652 50.000 0.00 0.00 44.64 3.16
232 233 0.320374 TACGACTGGGCCAAGAAGTG 59.680 55.000 16.25 2.51 0.00 3.16
233 234 1.053424 TTACGACTGGGCCAAGAAGT 58.947 50.000 16.25 15.30 0.00 3.01
234 235 1.804748 GTTTACGACTGGGCCAAGAAG 59.195 52.381 16.25 9.67 0.00 2.85
235 236 1.543871 GGTTTACGACTGGGCCAAGAA 60.544 52.381 16.25 0.00 0.00 2.52
237 238 2.551644 GGTTTACGACTGGGCCAAG 58.448 57.895 8.04 5.25 0.00 3.61
238 239 4.804806 GGTTTACGACTGGGCCAA 57.195 55.556 8.04 0.00 0.00 4.52
249 250 3.665745 TGTCCCTGTTACTCGGTTTAC 57.334 47.619 0.00 0.00 0.00 2.01
250 251 3.833650 TGATGTCCCTGTTACTCGGTTTA 59.166 43.478 0.00 0.00 0.00 2.01
251 252 2.635915 TGATGTCCCTGTTACTCGGTTT 59.364 45.455 0.00 0.00 0.00 3.27
252 253 2.253610 TGATGTCCCTGTTACTCGGTT 58.746 47.619 0.00 0.00 0.00 4.44
253 254 1.933021 TGATGTCCCTGTTACTCGGT 58.067 50.000 0.00 0.00 0.00 4.69
256 257 3.865745 CGTGATTGATGTCCCTGTTACTC 59.134 47.826 0.00 0.00 0.00 2.59
257 258 3.260884 ACGTGATTGATGTCCCTGTTACT 59.739 43.478 0.00 0.00 0.00 2.24
259 260 3.973206 ACGTGATTGATGTCCCTGTTA 57.027 42.857 0.00 0.00 0.00 2.41
260 261 2.859165 ACGTGATTGATGTCCCTGTT 57.141 45.000 0.00 0.00 0.00 3.16
261 262 4.191544 CAATACGTGATTGATGTCCCTGT 58.808 43.478 0.00 0.00 46.94 4.00
263 264 3.118261 AGCAATACGTGATTGATGTCCCT 60.118 43.478 16.77 5.38 46.94 4.20
264 265 3.206150 AGCAATACGTGATTGATGTCCC 58.794 45.455 16.77 3.79 46.94 4.46
265 266 4.882671 AAGCAATACGTGATTGATGTCC 57.117 40.909 16.77 4.28 43.38 4.02
272 273 4.759693 TCAACTTCCAAGCAATACGTGATT 59.240 37.500 0.00 0.00 35.84 2.57
273 274 4.323417 TCAACTTCCAAGCAATACGTGAT 58.677 39.130 0.00 0.00 0.00 3.06
274 275 3.734463 TCAACTTCCAAGCAATACGTGA 58.266 40.909 0.00 0.00 0.00 4.35
276 277 4.261447 GGTTTCAACTTCCAAGCAATACGT 60.261 41.667 0.00 0.00 0.00 3.57
277 278 4.226761 GGTTTCAACTTCCAAGCAATACG 58.773 43.478 0.00 0.00 0.00 3.06
278 279 4.982295 GTGGTTTCAACTTCCAAGCAATAC 59.018 41.667 0.00 0.00 32.82 1.89
279 280 4.646945 TGTGGTTTCAACTTCCAAGCAATA 59.353 37.500 0.00 0.00 32.82 1.90
280 281 3.450457 TGTGGTTTCAACTTCCAAGCAAT 59.550 39.130 0.00 0.00 32.82 3.56
281 282 2.828520 TGTGGTTTCAACTTCCAAGCAA 59.171 40.909 0.00 0.00 32.82 3.91
282 283 2.426738 CTGTGGTTTCAACTTCCAAGCA 59.573 45.455 0.00 0.00 32.82 3.91
283 284 2.223805 CCTGTGGTTTCAACTTCCAAGC 60.224 50.000 0.00 0.00 32.82 4.01
284 285 3.287222 TCCTGTGGTTTCAACTTCCAAG 58.713 45.455 0.00 0.00 32.82 3.61
285 286 3.374042 TCCTGTGGTTTCAACTTCCAA 57.626 42.857 0.00 0.00 32.82 3.53
286 287 3.287222 CTTCCTGTGGTTTCAACTTCCA 58.713 45.455 0.00 0.00 0.00 3.53
288 289 2.952310 AGCTTCCTGTGGTTTCAACTTC 59.048 45.455 0.00 0.00 0.00 3.01
290 291 2.301346 CAGCTTCCTGTGGTTTCAACT 58.699 47.619 0.00 0.00 34.31 3.16
291 292 1.269257 GCAGCTTCCTGTGGTTTCAAC 60.269 52.381 0.00 0.00 41.26 3.18
292 293 1.032014 GCAGCTTCCTGTGGTTTCAA 58.968 50.000 0.00 0.00 41.26 2.69
293 294 0.823356 GGCAGCTTCCTGTGGTTTCA 60.823 55.000 0.00 0.00 41.26 2.69
294 295 0.823356 TGGCAGCTTCCTGTGGTTTC 60.823 55.000 3.45 0.00 41.26 2.78
295 296 1.109323 GTGGCAGCTTCCTGTGGTTT 61.109 55.000 3.45 0.00 41.26 3.27
296 297 1.529244 GTGGCAGCTTCCTGTGGTT 60.529 57.895 3.45 0.00 41.26 3.67
297 298 2.113986 GTGGCAGCTTCCTGTGGT 59.886 61.111 3.45 0.00 41.26 4.16
298 299 1.108727 TTTGTGGCAGCTTCCTGTGG 61.109 55.000 3.45 0.00 41.26 4.17
299 300 0.031178 GTTTGTGGCAGCTTCCTGTG 59.969 55.000 3.45 0.00 41.26 3.66
301 302 1.662044 GGTTTGTGGCAGCTTCCTG 59.338 57.895 3.45 0.00 42.13 3.86
302 303 1.531602 GGGTTTGTGGCAGCTTCCT 60.532 57.895 3.45 0.00 0.00 3.36
303 304 2.919494 CGGGTTTGTGGCAGCTTCC 61.919 63.158 0.00 0.00 0.00 3.46
305 306 3.605664 GCGGGTTTGTGGCAGCTT 61.606 61.111 0.00 0.00 0.00 3.74
309 310 2.130821 TATCTGGCGGGTTTGTGGCA 62.131 55.000 0.00 0.00 39.03 4.92
310 311 0.963355 TTATCTGGCGGGTTTGTGGC 60.963 55.000 0.00 0.00 0.00 5.01
312 313 2.752354 TGATTTATCTGGCGGGTTTGTG 59.248 45.455 0.00 0.00 0.00 3.33
313 314 2.752903 GTGATTTATCTGGCGGGTTTGT 59.247 45.455 0.00 0.00 0.00 2.83
315 316 2.014128 CGTGATTTATCTGGCGGGTTT 58.986 47.619 0.00 0.00 0.00 3.27
317 318 0.814010 GCGTGATTTATCTGGCGGGT 60.814 55.000 0.00 0.00 0.00 5.28
318 319 0.813610 TGCGTGATTTATCTGGCGGG 60.814 55.000 0.00 0.00 0.00 6.13
320 321 0.583438 CCTGCGTGATTTATCTGGCG 59.417 55.000 0.00 0.00 0.00 5.69
321 322 1.668419 ACCTGCGTGATTTATCTGGC 58.332 50.000 0.00 0.00 0.00 4.85
323 324 5.120830 GGCTATAACCTGCGTGATTTATCTG 59.879 44.000 0.00 0.00 0.00 2.90
325 326 4.994852 TGGCTATAACCTGCGTGATTTATC 59.005 41.667 0.00 0.00 0.00 1.75
326 327 4.755123 GTGGCTATAACCTGCGTGATTTAT 59.245 41.667 0.00 0.00 0.00 1.40
327 328 4.124238 GTGGCTATAACCTGCGTGATTTA 58.876 43.478 0.00 0.00 0.00 1.40
328 329 2.943033 GTGGCTATAACCTGCGTGATTT 59.057 45.455 0.00 0.00 0.00 2.17
329 330 2.093181 TGTGGCTATAACCTGCGTGATT 60.093 45.455 0.00 0.00 0.00 2.57
330 331 1.484653 TGTGGCTATAACCTGCGTGAT 59.515 47.619 0.00 0.00 0.00 3.06
331 332 0.899019 TGTGGCTATAACCTGCGTGA 59.101 50.000 0.00 0.00 0.00 4.35
333 334 2.356135 CTTTGTGGCTATAACCTGCGT 58.644 47.619 0.00 0.00 0.00 5.24
334 335 1.670811 CCTTTGTGGCTATAACCTGCG 59.329 52.381 0.00 0.00 0.00 5.18
347 348 3.070018 AGACGAAGAAGATGCCTTTGTG 58.930 45.455 0.00 0.00 38.12 3.33
350 351 5.734720 TCATAAGACGAAGAAGATGCCTTT 58.265 37.500 0.00 0.00 31.62 3.11
351 352 5.105146 ACTCATAAGACGAAGAAGATGCCTT 60.105 40.000 0.00 0.00 34.81 4.35
352 353 4.404073 ACTCATAAGACGAAGAAGATGCCT 59.596 41.667 0.00 0.00 0.00 4.75
353 354 4.688021 ACTCATAAGACGAAGAAGATGCC 58.312 43.478 0.00 0.00 0.00 4.40
355 356 4.973051 CCGACTCATAAGACGAAGAAGATG 59.027 45.833 0.00 0.00 42.15 2.90
356 357 4.498345 GCCGACTCATAAGACGAAGAAGAT 60.498 45.833 0.00 0.00 42.15 2.40
357 358 3.181499 GCCGACTCATAAGACGAAGAAGA 60.181 47.826 0.00 0.00 42.15 2.87
358 359 3.109619 GCCGACTCATAAGACGAAGAAG 58.890 50.000 0.00 0.00 42.15 2.85
359 360 2.477357 CGCCGACTCATAAGACGAAGAA 60.477 50.000 0.00 0.00 42.15 2.52
360 361 1.063616 CGCCGACTCATAAGACGAAGA 59.936 52.381 0.00 0.00 42.15 2.87
361 362 1.063616 TCGCCGACTCATAAGACGAAG 59.936 52.381 0.00 0.00 42.15 3.79
362 363 1.089112 TCGCCGACTCATAAGACGAA 58.911 50.000 0.00 0.00 42.15 3.85
363 364 1.002792 CATCGCCGACTCATAAGACGA 60.003 52.381 0.00 0.00 42.15 4.20
365 366 2.776312 TCATCGCCGACTCATAAGAC 57.224 50.000 0.00 0.00 0.00 3.01
366 367 2.095718 CGATCATCGCCGACTCATAAGA 60.096 50.000 0.00 0.00 31.14 2.10
367 368 2.245942 CGATCATCGCCGACTCATAAG 58.754 52.381 0.00 0.00 31.14 1.73
370 371 4.952915 CGATCATCGCCGACTCAT 57.047 55.556 0.00 0.00 31.14 2.90
403 4210 2.541762 GCTCTGCGACAATCCATACTTC 59.458 50.000 0.00 0.00 0.00 3.01
404 4211 2.093500 TGCTCTGCGACAATCCATACTT 60.093 45.455 0.00 0.00 0.00 2.24
405 4212 1.482182 TGCTCTGCGACAATCCATACT 59.518 47.619 0.00 0.00 0.00 2.12
406 4213 1.594862 GTGCTCTGCGACAATCCATAC 59.405 52.381 0.00 0.00 0.00 2.39
470 4278 8.845413 TTTTTAAAGCAGGTTCATAATGCATT 57.155 26.923 17.56 17.56 42.45 3.56
535 4946 7.992008 ACGATTGTTTTCTCTAAACCTTTGAA 58.008 30.769 0.00 0.00 44.49 2.69
537 4948 7.414436 TGACGATTGTTTTCTCTAAACCTTTG 58.586 34.615 0.00 0.00 44.49 2.77
543 4954 9.498307 GAAAGTTTGACGATTGTTTTCTCTAAA 57.502 29.630 0.00 0.00 0.00 1.85
578 5063 2.632028 AGAACATCAGATGGCTAGCGAT 59.368 45.455 12.49 12.49 33.60 4.58
648 5139 6.547880 TGTTGCCACATTTTCTCTAACCTTTA 59.452 34.615 0.00 0.00 0.00 1.85
679 5170 8.485392 TCCCTCAAAAGAATGTTTCTCAAAAAT 58.515 29.630 0.00 0.00 39.61 1.82
683 5174 6.364701 TCTCCCTCAAAAGAATGTTTCTCAA 58.635 36.000 0.00 0.00 39.61 3.02
684 5175 5.940617 TCTCCCTCAAAAGAATGTTTCTCA 58.059 37.500 0.00 0.00 39.61 3.27
686 5177 7.660030 TTTTCTCCCTCAAAAGAATGTTTCT 57.340 32.000 0.00 0.00 43.15 2.52
687 5178 7.386025 CCATTTTCTCCCTCAAAAGAATGTTTC 59.614 37.037 0.00 0.00 31.89 2.78
689 5180 6.742363 GCCATTTTCTCCCTCAAAAGAATGTT 60.742 38.462 0.00 0.00 31.89 2.71
691 5182 5.173664 GCCATTTTCTCCCTCAAAAGAATG 58.826 41.667 0.00 0.00 31.89 2.67
692 5183 4.840115 TGCCATTTTCTCCCTCAAAAGAAT 59.160 37.500 0.00 0.00 31.89 2.40
693 5184 4.222336 TGCCATTTTCTCCCTCAAAAGAA 58.778 39.130 0.00 0.00 0.00 2.52
695 5186 4.202243 TGTTGCCATTTTCTCCCTCAAAAG 60.202 41.667 0.00 0.00 0.00 2.27
696 5187 3.708631 TGTTGCCATTTTCTCCCTCAAAA 59.291 39.130 0.00 0.00 0.00 2.44
697 5188 3.069443 GTGTTGCCATTTTCTCCCTCAAA 59.931 43.478 0.00 0.00 0.00 2.69
698 5189 2.627699 GTGTTGCCATTTTCTCCCTCAA 59.372 45.455 0.00 0.00 0.00 3.02
699 5190 2.158475 AGTGTTGCCATTTTCTCCCTCA 60.158 45.455 0.00 0.00 0.00 3.86
700 5191 2.519013 AGTGTTGCCATTTTCTCCCTC 58.481 47.619 0.00 0.00 0.00 4.30
701 5192 2.683211 AGTGTTGCCATTTTCTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
702 5193 3.751479 AAAGTGTTGCCATTTTCTCCC 57.249 42.857 0.00 0.00 0.00 4.30
731 5222 3.446442 AGGTTGCCATCATGTTTCTCT 57.554 42.857 0.00 0.00 0.00 3.10
733 5224 3.508793 CAGAAGGTTGCCATCATGTTTCT 59.491 43.478 0.00 0.00 0.00 2.52
745 5236 0.040958 CGCACAGTTCAGAAGGTTGC 60.041 55.000 1.20 1.20 0.00 4.17
784 5275 0.668706 CCTGGTCGAGTGCAGAACTG 60.669 60.000 0.00 0.00 40.07 3.16
785 5276 0.827925 TCCTGGTCGAGTGCAGAACT 60.828 55.000 0.00 0.00 43.85 3.01
786 5277 0.247736 ATCCTGGTCGAGTGCAGAAC 59.752 55.000 0.00 0.00 0.00 3.01
787 5278 0.247460 CATCCTGGTCGAGTGCAGAA 59.753 55.000 0.00 0.00 0.00 3.02
790 5281 1.591703 GACATCCTGGTCGAGTGCA 59.408 57.895 0.00 0.00 0.00 4.57
791 5282 1.153549 GGACATCCTGGTCGAGTGC 60.154 63.158 0.00 0.00 38.70 4.40
793 5284 1.388531 AGGGACATCCTGGTCGAGT 59.611 57.895 0.00 0.00 46.07 4.18
794 5285 4.364318 AGGGACATCCTGGTCGAG 57.636 61.111 0.00 0.00 46.07 4.04
802 5293 1.136500 GACCGAGTAACAGGGACATCC 59.864 57.143 0.00 0.00 0.00 3.51
804 5295 1.192428 GGACCGAGTAACAGGGACAT 58.808 55.000 0.00 0.00 0.00 3.06
807 5298 0.702902 AGAGGACCGAGTAACAGGGA 59.297 55.000 0.00 0.00 0.00 4.20
808 5299 1.477295 GAAGAGGACCGAGTAACAGGG 59.523 57.143 0.00 0.00 0.00 4.45
809 5300 1.477295 GGAAGAGGACCGAGTAACAGG 59.523 57.143 0.00 0.00 0.00 4.00
810 5301 1.477295 GGGAAGAGGACCGAGTAACAG 59.523 57.143 0.00 0.00 0.00 3.16
811 5302 1.553706 GGGAAGAGGACCGAGTAACA 58.446 55.000 0.00 0.00 0.00 2.41
812 5303 0.822811 GGGGAAGAGGACCGAGTAAC 59.177 60.000 0.00 0.00 0.00 2.50
813 5304 0.708802 AGGGGAAGAGGACCGAGTAA 59.291 55.000 0.00 0.00 0.00 2.24
814 5305 0.258194 GAGGGGAAGAGGACCGAGTA 59.742 60.000 0.00 0.00 0.00 2.59
815 5306 1.000612 GAGGGGAAGAGGACCGAGT 59.999 63.158 0.00 0.00 0.00 4.18
817 5308 2.044252 CGAGGGGAAGAGGACCGA 60.044 66.667 0.00 0.00 0.00 4.69
840 5340 2.940467 TGATGGGCTGGGCTGGAA 60.940 61.111 0.00 0.00 0.00 3.53
872 5377 4.095932 GGCGGATTTCTATTCTCGGTTTTT 59.904 41.667 0.00 0.00 0.00 1.94
884 5415 1.605453 GTGGGGTGGCGGATTTCTA 59.395 57.895 0.00 0.00 0.00 2.10
886 5417 3.131478 CGTGGGGTGGCGGATTTC 61.131 66.667 0.00 0.00 0.00 2.17
917 5448 0.671796 TGCGGTGAAAGTCGAGAAGA 59.328 50.000 0.00 0.00 0.00 2.87
920 5451 1.372997 GCTGCGGTGAAAGTCGAGA 60.373 57.895 0.00 0.00 0.00 4.04
936 5467 4.129148 GGGATTTGGGGGCGAGCT 62.129 66.667 0.00 0.00 0.00 4.09
1011 5574 4.742201 CCACGCTGTGTCGGAGGG 62.742 72.222 7.68 0.00 0.00 4.30
1245 5808 2.360801 GTCTCTGATTCTCCCCTTCTCG 59.639 54.545 0.00 0.00 0.00 4.04
1264 5827 1.719780 CACGTGCTCCTTTTCGTAGTC 59.280 52.381 0.82 0.00 35.13 2.59
1271 5834 0.250338 GGAGACCACGTGCTCCTTTT 60.250 55.000 26.14 3.03 45.72 2.27
1279 5842 0.249322 ACGAAGTTGGAGACCACGTG 60.249 55.000 9.08 9.08 37.78 4.49
1435 6020 4.760047 CTTGACTCCCCACCGGCG 62.760 72.222 0.00 0.00 0.00 6.46
1436 6021 4.410400 CCTTGACTCCCCACCGGC 62.410 72.222 0.00 0.00 0.00 6.13
1487 6072 4.382470 CGTCTTCATCCTCTTCAGACCAAT 60.382 45.833 0.00 0.00 31.83 3.16
1497 6082 0.324738 TGCCCTCGTCTTCATCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
1506 6109 0.325296 TCCAGGTTATGCCCTCGTCT 60.325 55.000 0.00 0.00 38.26 4.18
1539 6142 1.450312 GCAGCCGTCCTTAGCACAT 60.450 57.895 0.00 0.00 0.00 3.21
1545 6148 1.220749 GTGATGGCAGCCGTCCTTA 59.779 57.895 27.97 9.49 38.69 2.69
1558 6161 1.878088 GCCATGGCAGTAGATGTGATG 59.122 52.381 32.08 0.00 41.49 3.07
1560 6163 0.179076 CGCCATGGCAGTAGATGTGA 60.179 55.000 34.93 0.00 42.06 3.58
1618 6221 1.053424 TAGACGGTGGCAAAGGTCTT 58.947 50.000 17.77 6.43 40.10 3.01
1676 6294 1.673168 GATGGCATGAGGTTCCTCAC 58.327 55.000 21.70 11.34 44.54 3.51
1686 6304 1.064134 CGTCGTCTCGATGGCATGA 59.936 57.895 3.81 1.89 38.96 3.07
1687 6305 3.605612 CGTCGTCTCGATGGCATG 58.394 61.111 3.81 0.00 38.96 4.06
1712 6330 1.333619 CCTTGTTTCCCACAACGACAG 59.666 52.381 0.00 0.00 40.71 3.51
1715 6333 1.210967 AGACCTTGTTTCCCACAACGA 59.789 47.619 0.00 0.00 40.71 3.85
1873 6497 4.193826 AGTTCATCACAGTCGCTAACAT 57.806 40.909 0.00 0.00 0.00 2.71
1960 6584 0.179124 GAGCTCGATGACCCTGTGTC 60.179 60.000 0.00 0.00 44.72 3.67
1961 6585 1.893786 GAGCTCGATGACCCTGTGT 59.106 57.895 0.00 0.00 0.00 3.72
2059 6703 1.003118 TGTACAGCCCAGCCTTTGTAG 59.997 52.381 0.00 0.00 0.00 2.74
2172 6816 6.538742 TGAAAAACAGTATGAGGCTAGTATGC 59.461 38.462 0.00 0.00 39.69 3.14
2175 6819 7.934665 TGTTTGAAAAACAGTATGAGGCTAGTA 59.065 33.333 1.52 0.00 39.69 1.82
2217 6862 2.157668 GTCGATGGTGTGCTTAGTGTTG 59.842 50.000 0.00 0.00 0.00 3.33
2307 6957 7.228108 ACTCATCAATGATTAGAAATCGCACAT 59.772 33.333 11.03 0.00 36.02 3.21
2419 7079 6.212388 ACAAAGGAGGATGCCTACATATCTAG 59.788 42.308 0.00 0.00 36.80 2.43
2424 7085 4.037222 TCACAAAGGAGGATGCCTACATA 58.963 43.478 0.00 0.00 36.80 2.29
2535 8064 4.504514 CCTCTGGCTTGTATGTATCAGCAT 60.505 45.833 0.00 0.00 0.00 3.79
2538 8068 3.643320 TCCCTCTGGCTTGTATGTATCAG 59.357 47.826 0.00 0.00 0.00 2.90
2597 8127 5.811796 TGGTCAGTTGCTTAGTTAACCTA 57.188 39.130 0.88 0.00 0.00 3.08
2612 8142 3.146104 CCATGAAGGTCTTTGGTCAGT 57.854 47.619 0.00 0.00 0.00 3.41
2692 8234 5.454329 GCTCCGATAAAGTTAACCTACCCAT 60.454 44.000 0.88 0.00 0.00 4.00
2734 8276 4.775780 AGGCAGTAATGACCTAGTGTTACA 59.224 41.667 4.64 0.00 31.24 2.41
2797 8339 3.013188 TGGGACTAGGTTATGGGTACACT 59.987 47.826 0.00 0.00 0.00 3.55
2802 8344 2.174854 GCAATGGGACTAGGTTATGGGT 59.825 50.000 0.00 0.00 0.00 4.51
2844 8417 4.522789 ACATAGCAACGGAACCATCTTTTT 59.477 37.500 0.00 0.00 0.00 1.94
2853 8426 2.093869 TGGAGGTACATAGCAACGGAAC 60.094 50.000 0.00 0.00 0.00 3.62
2862 8435 2.548067 GCATCCCGTTGGAGGTACATAG 60.548 54.545 0.00 0.00 46.08 2.23
2864 8437 0.180406 GCATCCCGTTGGAGGTACAT 59.820 55.000 0.00 0.00 46.08 2.29
2876 8449 1.725665 CAACTGAGCATGCATCCCG 59.274 57.895 21.98 7.48 0.00 5.14
2884 8457 1.476471 GCCATAGGAGCAACTGAGCAT 60.476 52.381 0.00 0.00 36.85 3.79
2889 8462 0.531532 CCGAGCCATAGGAGCAACTG 60.532 60.000 0.00 0.00 0.00 3.16
2890 8463 0.978146 ACCGAGCCATAGGAGCAACT 60.978 55.000 0.00 0.00 0.00 3.16
2898 8471 1.334869 GCCAAATCAACCGAGCCATAG 59.665 52.381 0.00 0.00 0.00 2.23
2906 8479 1.213537 CAGCTGGCCAAATCAACCG 59.786 57.895 7.01 0.00 0.00 4.44
2918 8491 9.595823 AGAAAATATCATTTCATTTTCAGCTGG 57.404 29.630 15.13 0.00 46.46 4.85
2938 8511 7.745620 AAAGTCACCTATGTTTCGAGAAAAT 57.254 32.000 0.00 0.54 31.33 1.82
2952 8525 5.560722 TGGATGAGTCAAAAAGTCACCTA 57.439 39.130 0.00 0.00 40.14 3.08
2964 8539 9.958180 TCTTCTTGTTAATTAATGGATGAGTCA 57.042 29.630 0.31 0.00 0.00 3.41
2996 8571 3.822167 GGTTTTCCGTCAATTAACTGGGA 59.178 43.478 0.00 0.00 0.00 4.37
3019 8594 1.004595 GTTTATGACGGTTCTCGCCC 58.995 55.000 0.00 0.00 43.89 6.13
3025 8600 2.095415 GTGGGCAAGTTTATGACGGTTC 60.095 50.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.