Multiple sequence alignment - TraesCS4A01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G018500 chr4A 100.000 3506 0 0 1 3506 12152546 12156051 0.000000e+00 6475.0
1 TraesCS4A01G018500 chr4A 89.089 1943 165 22 1074 2991 11987685 11989605 0.000000e+00 2370.0
2 TraesCS4A01G018500 chr4A 90.237 1516 83 22 911 2407 11841119 11842588 0.000000e+00 1919.0
3 TraesCS4A01G018500 chr4A 85.179 614 78 9 2591 3202 11846058 11846660 4.970000e-173 617.0
4 TraesCS4A01G018500 chr4A 92.969 256 18 0 11 266 103491952 103492207 1.190000e-99 374.0
5 TraesCS4A01G018500 chr4A 90.288 278 26 1 4 280 734914232 734914509 2.570000e-96 363.0
6 TraesCS4A01G018500 chr4A 87.037 108 10 3 859 966 11987284 11987387 6.150000e-23 119.0
7 TraesCS4A01G018500 chr4A 100.000 29 0 0 847 875 11984904 11984932 2.000000e-03 54.7
8 TraesCS4A01G018500 chr4D 90.909 1672 101 24 835 2493 455703233 455701600 0.000000e+00 2198.0
9 TraesCS4A01G018500 chr4D 87.634 1868 166 32 1680 3506 455699997 455698154 0.000000e+00 2109.0
10 TraesCS4A01G018500 chr4D 97.628 253 6 0 1314 1566 455700246 455699994 5.370000e-118 435.0
11 TraesCS4A01G018500 chr4D 88.889 144 12 4 2856 2996 455701582 455701440 1.290000e-39 174.0
12 TraesCS4A01G018500 chr4B 94.071 1383 66 8 1083 2464 568880087 568878720 0.000000e+00 2085.0
13 TraesCS4A01G018500 chr4B 94.643 1344 71 1 1081 2423 569406555 569405212 0.000000e+00 2082.0
14 TraesCS4A01G018500 chr4B 86.078 668 73 9 2856 3506 568878583 568877919 0.000000e+00 701.0
15 TraesCS4A01G018500 chr4B 88.506 261 16 4 561 818 568880641 568880392 1.580000e-78 303.0
16 TraesCS4A01G018500 chr4B 88.608 237 6 6 816 1035 568880321 568880089 5.770000e-68 268.0
17 TraesCS4A01G018500 chr4B 88.276 145 10 2 425 569 568914946 568914809 2.160000e-37 167.0
18 TraesCS4A01G018500 chr7B 92.780 277 19 1 1 276 458631812 458631536 1.960000e-107 399.0
19 TraesCS4A01G018500 chr1B 90.323 279 26 1 3 280 659071318 659071596 7.150000e-97 364.0
20 TraesCS4A01G018500 chr1A 90.288 278 25 2 3 279 557045849 557046125 2.570000e-96 363.0
21 TraesCS4A01G018500 chr3B 89.892 277 26 2 3 278 702840872 702841147 4.300000e-94 355.0
22 TraesCS4A01G018500 chr6B 89.668 271 26 2 8 276 511686247 511685977 9.320000e-91 344.0
23 TraesCS4A01G018500 chr7A 88.571 280 31 1 3 281 681708138 681708417 4.330000e-89 339.0
24 TraesCS4A01G018500 chr7A 88.809 277 29 2 3 278 695890016 695890291 4.330000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G018500 chr4A 12152546 12156051 3505 False 6475.00 6475 100.00000 1 3506 1 chr4A.!!$F1 3505
1 TraesCS4A01G018500 chr4A 11841119 11846660 5541 False 1268.00 1919 87.70800 911 3202 2 chr4A.!!$F4 2291
2 TraesCS4A01G018500 chr4A 11984904 11989605 4701 False 847.90 2370 92.04200 847 2991 3 chr4A.!!$F5 2144
3 TraesCS4A01G018500 chr4D 455698154 455703233 5079 True 1229.00 2198 91.26500 835 3506 4 chr4D.!!$R1 2671
4 TraesCS4A01G018500 chr4B 569405212 569406555 1343 True 2082.00 2082 94.64300 1081 2423 1 chr4B.!!$R2 1342
5 TraesCS4A01G018500 chr4B 568877919 568880641 2722 True 839.25 2085 89.31575 561 3506 4 chr4B.!!$R3 2945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.034089 GCTGAAAGGGTGCTGGGTAT 60.034 55.0 0.0 0.0 0.0 2.73 F
1884 4550 0.035881 CTTCTCCCAAGTGCTGCTCA 59.964 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 4568 0.672711 GTGAACCCGTAGTTGAGGCC 60.673 60.0 0.0 0.0 39.4 5.19 R
3269 11745 0.096976 GCCGACAATCACATCCAACG 59.903 55.0 0.0 0.0 0.0 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.088104 TCTGACTGTCAAGGAGTGGT 57.912 50.000 12.16 0.00 0.00 4.16
20 21 2.398588 TCTGACTGTCAAGGAGTGGTT 58.601 47.619 12.16 0.00 0.00 3.67
21 22 2.771943 TCTGACTGTCAAGGAGTGGTTT 59.228 45.455 12.16 0.00 0.00 3.27
22 23 3.964688 TCTGACTGTCAAGGAGTGGTTTA 59.035 43.478 12.16 0.00 0.00 2.01
23 24 4.058817 CTGACTGTCAAGGAGTGGTTTAC 58.941 47.826 12.16 0.00 0.00 2.01
24 25 3.057734 GACTGTCAAGGAGTGGTTTACG 58.942 50.000 2.24 0.00 0.00 3.18
25 26 2.696707 ACTGTCAAGGAGTGGTTTACGA 59.303 45.455 0.00 0.00 0.00 3.43
26 27 3.057734 CTGTCAAGGAGTGGTTTACGAC 58.942 50.000 0.00 0.00 0.00 4.34
27 28 2.431419 TGTCAAGGAGTGGTTTACGACA 59.569 45.455 0.00 0.00 0.00 4.35
28 29 3.070446 TGTCAAGGAGTGGTTTACGACAT 59.930 43.478 0.00 0.00 0.00 3.06
29 30 3.678548 GTCAAGGAGTGGTTTACGACATC 59.321 47.826 0.00 0.00 0.00 3.06
30 31 3.322541 TCAAGGAGTGGTTTACGACATCA 59.677 43.478 0.00 0.00 0.00 3.07
31 32 4.062293 CAAGGAGTGGTTTACGACATCAA 58.938 43.478 0.00 0.00 0.00 2.57
32 33 3.660865 AGGAGTGGTTTACGACATCAAC 58.339 45.455 0.00 0.00 0.00 3.18
33 34 3.070446 AGGAGTGGTTTACGACATCAACA 59.930 43.478 0.00 0.00 0.00 3.33
34 35 3.432252 GGAGTGGTTTACGACATCAACAG 59.568 47.826 0.00 0.00 0.00 3.16
35 36 3.399330 AGTGGTTTACGACATCAACAGG 58.601 45.455 0.00 0.00 0.00 4.00
36 37 2.482721 GTGGTTTACGACATCAACAGGG 59.517 50.000 0.00 0.00 0.00 4.45
37 38 2.081462 GGTTTACGACATCAACAGGGG 58.919 52.381 0.00 0.00 0.00 4.79
38 39 2.081462 GTTTACGACATCAACAGGGGG 58.919 52.381 0.00 0.00 0.00 5.40
39 40 1.646912 TTACGACATCAACAGGGGGA 58.353 50.000 0.00 0.00 0.00 4.81
40 41 0.899720 TACGACATCAACAGGGGGAC 59.100 55.000 0.00 0.00 0.00 4.46
41 42 1.447838 CGACATCAACAGGGGGACG 60.448 63.158 0.00 0.00 0.00 4.79
42 43 1.078426 GACATCAACAGGGGGACGG 60.078 63.158 0.00 0.00 0.00 4.79
43 44 2.272146 CATCAACAGGGGGACGGG 59.728 66.667 0.00 0.00 0.00 5.28
44 45 2.124085 ATCAACAGGGGGACGGGA 59.876 61.111 0.00 0.00 0.00 5.14
45 46 1.540367 ATCAACAGGGGGACGGGAA 60.540 57.895 0.00 0.00 0.00 3.97
46 47 1.562672 ATCAACAGGGGGACGGGAAG 61.563 60.000 0.00 0.00 0.00 3.46
47 48 2.206036 AACAGGGGGACGGGAAGA 59.794 61.111 0.00 0.00 0.00 2.87
48 49 2.222013 AACAGGGGGACGGGAAGAC 61.222 63.158 0.00 0.00 0.00 3.01
49 50 2.284699 CAGGGGGACGGGAAGACT 60.285 66.667 0.00 0.00 0.00 3.24
50 51 2.039137 AGGGGGACGGGAAGACTC 59.961 66.667 0.00 0.00 0.00 3.36
51 52 3.082055 GGGGGACGGGAAGACTCC 61.082 72.222 0.00 0.00 41.59 3.85
52 53 2.284405 GGGGACGGGAAGACTCCA 60.284 66.667 0.00 0.00 44.51 3.86
53 54 1.689582 GGGGACGGGAAGACTCCAT 60.690 63.158 0.00 0.00 44.51 3.41
54 55 1.522569 GGGACGGGAAGACTCCATG 59.477 63.158 0.00 0.00 44.51 3.66
55 56 1.153349 GGACGGGAAGACTCCATGC 60.153 63.158 0.00 0.00 44.51 4.06
56 57 1.617947 GGACGGGAAGACTCCATGCT 61.618 60.000 0.00 0.00 44.51 3.79
57 58 0.460987 GACGGGAAGACTCCATGCTG 60.461 60.000 0.00 0.00 44.51 4.41
58 59 1.817099 CGGGAAGACTCCATGCTGC 60.817 63.158 0.00 0.00 44.51 5.25
59 60 1.606531 GGGAAGACTCCATGCTGCT 59.393 57.895 0.00 0.00 44.51 4.24
60 61 0.833287 GGGAAGACTCCATGCTGCTA 59.167 55.000 0.00 0.00 44.51 3.49
61 62 1.419387 GGGAAGACTCCATGCTGCTAT 59.581 52.381 0.00 0.00 44.51 2.97
62 63 2.634940 GGGAAGACTCCATGCTGCTATA 59.365 50.000 0.00 0.00 44.51 1.31
63 64 3.306641 GGGAAGACTCCATGCTGCTATAG 60.307 52.174 0.00 0.00 44.51 1.31
64 65 3.323403 GGAAGACTCCATGCTGCTATAGT 59.677 47.826 0.00 0.00 41.96 2.12
65 66 4.524714 GGAAGACTCCATGCTGCTATAGTA 59.475 45.833 0.00 0.00 41.96 1.82
66 67 5.461032 AAGACTCCATGCTGCTATAGTAC 57.539 43.478 0.00 0.00 0.00 2.73
67 68 4.474394 AGACTCCATGCTGCTATAGTACA 58.526 43.478 0.00 0.00 0.00 2.90
68 69 5.083122 AGACTCCATGCTGCTATAGTACAT 58.917 41.667 0.00 1.49 0.00 2.29
69 70 5.047448 AGACTCCATGCTGCTATAGTACATG 60.047 44.000 17.95 17.95 38.24 3.21
70 71 4.835056 ACTCCATGCTGCTATAGTACATGA 59.165 41.667 22.55 13.79 40.39 3.07
71 72 5.305386 ACTCCATGCTGCTATAGTACATGAA 59.695 40.000 22.55 10.97 40.39 2.57
72 73 6.173427 TCCATGCTGCTATAGTACATGAAA 57.827 37.500 22.55 13.78 40.39 2.69
73 74 6.772605 TCCATGCTGCTATAGTACATGAAAT 58.227 36.000 22.55 0.00 40.39 2.17
74 75 7.906327 TCCATGCTGCTATAGTACATGAAATA 58.094 34.615 22.55 10.79 40.39 1.40
75 76 8.374743 TCCATGCTGCTATAGTACATGAAATAA 58.625 33.333 22.55 9.33 40.39 1.40
76 77 9.170734 CCATGCTGCTATAGTACATGAAATAAT 57.829 33.333 22.55 0.00 40.39 1.28
79 80 9.875691 TGCTGCTATAGTACATGAAATAATAGG 57.124 33.333 0.00 0.00 0.00 2.57
80 81 9.877178 GCTGCTATAGTACATGAAATAATAGGT 57.123 33.333 0.00 0.00 0.00 3.08
100 101 9.551734 AATAGGTCGTAAAAGTAGTTTTCAGTT 57.448 29.630 11.53 0.00 37.12 3.16
103 104 8.985805 AGGTCGTAAAAGTAGTTTTCAGTTATG 58.014 33.333 11.53 0.74 37.12 1.90
104 105 8.768019 GGTCGTAAAAGTAGTTTTCAGTTATGT 58.232 33.333 11.53 0.00 37.12 2.29
121 122 9.176460 TCAGTTATGTAATTTCATTCATGAGCA 57.824 29.630 2.68 0.00 38.19 4.26
122 123 9.229784 CAGTTATGTAATTTCATTCATGAGCAC 57.770 33.333 2.68 0.00 38.19 4.40
123 124 8.959548 AGTTATGTAATTTCATTCATGAGCACA 58.040 29.630 2.68 0.00 38.19 4.57
124 125 9.571810 GTTATGTAATTTCATTCATGAGCACAA 57.428 29.630 2.68 0.00 38.19 3.33
127 128 8.883954 TGTAATTTCATTCATGAGCACAAAAA 57.116 26.923 0.00 0.00 38.19 1.94
128 129 8.763356 TGTAATTTCATTCATGAGCACAAAAAC 58.237 29.630 0.00 0.00 38.19 2.43
129 130 8.981647 GTAATTTCATTCATGAGCACAAAAACT 58.018 29.630 0.00 0.00 38.19 2.66
131 132 9.715121 AATTTCATTCATGAGCACAAAAACTAT 57.285 25.926 0.00 0.00 38.19 2.12
134 135 9.624697 TTCATTCATGAGCACAAAAACTATAAC 57.375 29.630 0.00 0.00 38.19 1.89
135 136 9.013229 TCATTCATGAGCACAAAAACTATAACT 57.987 29.630 0.00 0.00 32.11 2.24
139 140 9.665719 TCATGAGCACAAAAACTATAACTATGA 57.334 29.630 0.00 0.00 0.00 2.15
140 141 9.926751 CATGAGCACAAAAACTATAACTATGAG 57.073 33.333 0.00 0.00 0.00 2.90
141 142 8.492673 TGAGCACAAAAACTATAACTATGAGG 57.507 34.615 0.00 0.00 0.00 3.86
142 143 7.065803 TGAGCACAAAAACTATAACTATGAGGC 59.934 37.037 0.00 0.00 0.00 4.70
143 144 7.112779 AGCACAAAAACTATAACTATGAGGCT 58.887 34.615 0.00 0.00 0.00 4.58
144 145 7.281100 AGCACAAAAACTATAACTATGAGGCTC 59.719 37.037 7.79 7.79 0.00 4.70
145 146 7.065803 GCACAAAAACTATAACTATGAGGCTCA 59.934 37.037 21.19 21.19 0.00 4.26
146 147 9.113838 CACAAAAACTATAACTATGAGGCTCAT 57.886 33.333 30.89 30.89 40.72 2.90
153 154 9.988815 ACTATAACTATGAGGCTCATAAACTTG 57.011 33.333 30.99 22.82 38.72 3.16
154 155 7.736447 ATAACTATGAGGCTCATAAACTTGC 57.264 36.000 30.99 0.00 38.72 4.01
155 156 4.455606 ACTATGAGGCTCATAAACTTGCC 58.544 43.478 30.99 0.00 38.72 4.52
194 195 6.049149 CCTACAATTAGGTAGACATGTGTGG 58.951 44.000 1.15 0.00 42.68 4.17
195 196 5.499004 ACAATTAGGTAGACATGTGTGGT 57.501 39.130 1.15 0.00 0.00 4.16
196 197 5.876357 ACAATTAGGTAGACATGTGTGGTT 58.124 37.500 1.15 0.00 0.00 3.67
197 198 5.705441 ACAATTAGGTAGACATGTGTGGTTG 59.295 40.000 1.15 3.10 0.00 3.77
198 199 2.859165 AGGTAGACATGTGTGGTTGG 57.141 50.000 1.15 0.00 0.00 3.77
199 200 2.334977 AGGTAGACATGTGTGGTTGGA 58.665 47.619 1.15 0.00 0.00 3.53
200 201 2.708861 AGGTAGACATGTGTGGTTGGAA 59.291 45.455 1.15 0.00 0.00 3.53
201 202 3.137544 AGGTAGACATGTGTGGTTGGAAA 59.862 43.478 1.15 0.00 0.00 3.13
202 203 3.886505 GGTAGACATGTGTGGTTGGAAAA 59.113 43.478 1.15 0.00 0.00 2.29
203 204 4.522789 GGTAGACATGTGTGGTTGGAAAAT 59.477 41.667 1.15 0.00 0.00 1.82
204 205 4.853924 AGACATGTGTGGTTGGAAAATC 57.146 40.909 1.15 0.00 0.00 2.17
205 206 3.573967 AGACATGTGTGGTTGGAAAATCC 59.426 43.478 1.15 0.00 36.96 3.01
206 207 3.573967 GACATGTGTGGTTGGAAAATCCT 59.426 43.478 1.15 0.00 37.46 3.24
207 208 3.573967 ACATGTGTGGTTGGAAAATCCTC 59.426 43.478 0.00 0.00 37.46 3.71
208 209 3.304911 TGTGTGGTTGGAAAATCCTCA 57.695 42.857 0.00 0.00 37.46 3.86
209 210 3.843422 TGTGTGGTTGGAAAATCCTCAT 58.157 40.909 0.00 0.00 37.46 2.90
210 211 3.573538 TGTGTGGTTGGAAAATCCTCATG 59.426 43.478 0.00 0.00 37.46 3.07
211 212 3.826157 GTGTGGTTGGAAAATCCTCATGA 59.174 43.478 0.00 0.00 37.46 3.07
212 213 3.826157 TGTGGTTGGAAAATCCTCATGAC 59.174 43.478 0.00 0.00 37.46 3.06
213 214 3.193479 GTGGTTGGAAAATCCTCATGACC 59.807 47.826 0.00 0.00 37.46 4.02
214 215 2.760650 GGTTGGAAAATCCTCATGACCC 59.239 50.000 0.00 0.00 37.46 4.46
215 216 3.430453 GTTGGAAAATCCTCATGACCCA 58.570 45.455 0.00 0.00 37.46 4.51
216 217 3.824001 TGGAAAATCCTCATGACCCAA 57.176 42.857 0.00 0.00 37.46 4.12
217 218 3.430453 TGGAAAATCCTCATGACCCAAC 58.570 45.455 0.00 0.00 37.46 3.77
218 219 3.181424 TGGAAAATCCTCATGACCCAACA 60.181 43.478 0.00 0.00 37.46 3.33
219 220 3.445096 GGAAAATCCTCATGACCCAACAG 59.555 47.826 0.00 0.00 32.53 3.16
220 221 3.814504 AAATCCTCATGACCCAACAGT 57.185 42.857 0.00 0.00 0.00 3.55
221 222 3.814504 AATCCTCATGACCCAACAGTT 57.185 42.857 0.00 0.00 0.00 3.16
222 223 2.566833 TCCTCATGACCCAACAGTTG 57.433 50.000 6.28 6.28 0.00 3.16
223 224 1.774254 TCCTCATGACCCAACAGTTGT 59.226 47.619 12.42 0.00 0.00 3.32
224 225 2.976185 TCCTCATGACCCAACAGTTGTA 59.024 45.455 12.42 0.00 0.00 2.41
225 226 3.587061 TCCTCATGACCCAACAGTTGTAT 59.413 43.478 12.42 0.00 0.00 2.29
226 227 3.941483 CCTCATGACCCAACAGTTGTATC 59.059 47.826 12.42 9.35 0.00 2.24
227 228 4.323792 CCTCATGACCCAACAGTTGTATCT 60.324 45.833 12.42 0.00 0.00 1.98
228 229 5.104941 CCTCATGACCCAACAGTTGTATCTA 60.105 44.000 12.42 1.85 0.00 1.98
229 230 6.408548 CCTCATGACCCAACAGTTGTATCTAT 60.409 42.308 12.42 3.76 0.00 1.98
230 231 6.348498 TCATGACCCAACAGTTGTATCTATG 58.652 40.000 12.42 13.10 0.00 2.23
231 232 6.156083 TCATGACCCAACAGTTGTATCTATGA 59.844 38.462 12.42 14.63 0.00 2.15
232 233 6.367374 TGACCCAACAGTTGTATCTATGAA 57.633 37.500 12.42 0.00 0.00 2.57
233 234 6.170506 TGACCCAACAGTTGTATCTATGAAC 58.829 40.000 12.42 0.00 0.00 3.18
234 235 5.175859 ACCCAACAGTTGTATCTATGAACG 58.824 41.667 12.42 0.00 0.00 3.95
235 236 5.175859 CCCAACAGTTGTATCTATGAACGT 58.824 41.667 12.42 0.00 0.00 3.99
236 237 5.642063 CCCAACAGTTGTATCTATGAACGTT 59.358 40.000 12.42 0.00 0.00 3.99
237 238 6.402118 CCCAACAGTTGTATCTATGAACGTTG 60.402 42.308 5.00 0.00 35.84 4.10
238 239 5.779806 ACAGTTGTATCTATGAACGTTGC 57.220 39.130 5.00 0.00 0.00 4.17
239 240 5.479306 ACAGTTGTATCTATGAACGTTGCT 58.521 37.500 5.00 0.00 0.00 3.91
240 241 5.932303 ACAGTTGTATCTATGAACGTTGCTT 59.068 36.000 5.00 0.00 0.00 3.91
241 242 6.426937 ACAGTTGTATCTATGAACGTTGCTTT 59.573 34.615 5.00 0.00 0.00 3.51
242 243 6.738200 CAGTTGTATCTATGAACGTTGCTTTG 59.262 38.462 5.00 0.00 0.00 2.77
243 244 5.794687 TGTATCTATGAACGTTGCTTTGG 57.205 39.130 5.00 0.00 0.00 3.28
244 245 5.483811 TGTATCTATGAACGTTGCTTTGGA 58.516 37.500 5.00 0.00 0.00 3.53
245 246 5.935206 TGTATCTATGAACGTTGCTTTGGAA 59.065 36.000 5.00 0.00 0.00 3.53
246 247 6.597672 TGTATCTATGAACGTTGCTTTGGAAT 59.402 34.615 5.00 0.00 0.00 3.01
247 248 7.766738 TGTATCTATGAACGTTGCTTTGGAATA 59.233 33.333 5.00 0.00 0.00 1.75
248 249 7.624360 ATCTATGAACGTTGCTTTGGAATAA 57.376 32.000 5.00 0.00 0.00 1.40
249 250 7.441890 TCTATGAACGTTGCTTTGGAATAAA 57.558 32.000 5.00 0.00 0.00 1.40
250 251 7.877003 TCTATGAACGTTGCTTTGGAATAAAA 58.123 30.769 5.00 0.00 0.00 1.52
251 252 8.353684 TCTATGAACGTTGCTTTGGAATAAAAA 58.646 29.630 5.00 0.00 0.00 1.94
252 253 6.820470 TGAACGTTGCTTTGGAATAAAAAG 57.180 33.333 5.00 0.00 37.63 2.27
263 264 8.822652 CTTTGGAATAAAAAGCTTGATGAGTT 57.177 30.769 0.00 0.00 0.00 3.01
264 265 9.264719 CTTTGGAATAAAAAGCTTGATGAGTTT 57.735 29.630 0.00 0.00 0.00 2.66
265 266 9.612066 TTTGGAATAAAAAGCTTGATGAGTTTT 57.388 25.926 0.00 0.00 40.05 2.43
266 267 8.816640 TGGAATAAAAAGCTTGATGAGTTTTC 57.183 30.769 0.00 0.00 37.76 2.29
267 268 8.641541 TGGAATAAAAAGCTTGATGAGTTTTCT 58.358 29.630 0.00 0.00 37.76 2.52
268 269 9.133627 GGAATAAAAAGCTTGATGAGTTTTCTC 57.866 33.333 0.00 0.00 46.33 2.87
300 301 5.712152 AACAAGAGGCTTCAAACTTATGG 57.288 39.130 0.00 0.00 0.00 2.74
301 302 4.729868 ACAAGAGGCTTCAAACTTATGGT 58.270 39.130 0.00 0.00 0.00 3.55
302 303 4.520492 ACAAGAGGCTTCAAACTTATGGTG 59.480 41.667 0.00 0.00 0.00 4.17
303 304 3.084786 AGAGGCTTCAAACTTATGGTGC 58.915 45.455 0.00 0.00 0.00 5.01
304 305 3.084786 GAGGCTTCAAACTTATGGTGCT 58.915 45.455 0.00 0.00 0.00 4.40
305 306 3.500343 AGGCTTCAAACTTATGGTGCTT 58.500 40.909 0.00 0.00 0.00 3.91
306 307 4.662278 AGGCTTCAAACTTATGGTGCTTA 58.338 39.130 0.00 0.00 0.00 3.09
307 308 4.702131 AGGCTTCAAACTTATGGTGCTTAG 59.298 41.667 0.00 0.00 0.00 2.18
308 309 4.459337 GGCTTCAAACTTATGGTGCTTAGT 59.541 41.667 0.00 0.00 0.00 2.24
309 310 5.646360 GGCTTCAAACTTATGGTGCTTAGTA 59.354 40.000 0.00 0.00 0.00 1.82
310 311 6.183360 GGCTTCAAACTTATGGTGCTTAGTAG 60.183 42.308 0.00 0.00 0.00 2.57
340 341 9.939424 AATAGATATATACTGGGAGGTAGGAAC 57.061 37.037 0.00 0.00 0.00 3.62
341 342 7.358255 AGATATATACTGGGAGGTAGGAACA 57.642 40.000 0.00 0.00 0.00 3.18
342 343 7.956357 AGATATATACTGGGAGGTAGGAACAT 58.044 38.462 0.00 0.00 0.00 2.71
343 344 7.841729 AGATATATACTGGGAGGTAGGAACATG 59.158 40.741 0.00 0.00 0.00 3.21
344 345 1.584724 ACTGGGAGGTAGGAACATGG 58.415 55.000 0.00 0.00 0.00 3.66
345 346 0.181350 CTGGGAGGTAGGAACATGGC 59.819 60.000 0.00 0.00 0.00 4.40
346 347 1.146263 GGGAGGTAGGAACATGGCG 59.854 63.158 0.00 0.00 0.00 5.69
347 348 1.623542 GGGAGGTAGGAACATGGCGT 61.624 60.000 0.00 0.00 0.00 5.68
348 349 0.462047 GGAGGTAGGAACATGGCGTG 60.462 60.000 4.87 4.87 0.00 5.34
349 350 0.535335 GAGGTAGGAACATGGCGTGA 59.465 55.000 14.82 0.00 0.00 4.35
350 351 0.537188 AGGTAGGAACATGGCGTGAG 59.463 55.000 14.82 0.00 0.00 3.51
362 363 3.257933 CGTGAGCTGAAAGGGTGC 58.742 61.111 0.00 0.00 0.00 5.01
363 364 1.302033 CGTGAGCTGAAAGGGTGCT 60.302 57.895 0.00 0.00 40.02 4.40
364 365 1.572085 CGTGAGCTGAAAGGGTGCTG 61.572 60.000 0.00 0.00 37.16 4.41
365 366 1.073722 TGAGCTGAAAGGGTGCTGG 59.926 57.895 0.00 0.00 37.16 4.85
366 367 1.676967 GAGCTGAAAGGGTGCTGGG 60.677 63.158 0.00 0.00 37.16 4.45
367 368 2.116125 GCTGAAAGGGTGCTGGGT 59.884 61.111 0.00 0.00 0.00 4.51
368 369 1.133809 AGCTGAAAGGGTGCTGGGTA 61.134 55.000 0.00 0.00 35.54 3.69
369 370 0.034089 GCTGAAAGGGTGCTGGGTAT 60.034 55.000 0.00 0.00 0.00 2.73
370 371 1.616994 GCTGAAAGGGTGCTGGGTATT 60.617 52.381 0.00 0.00 0.00 1.89
371 372 2.369394 CTGAAAGGGTGCTGGGTATTC 58.631 52.381 0.00 0.00 0.00 1.75
372 373 1.992557 TGAAAGGGTGCTGGGTATTCT 59.007 47.619 0.00 0.00 0.00 2.40
373 374 3.186283 TGAAAGGGTGCTGGGTATTCTA 58.814 45.455 0.00 0.00 0.00 2.10
374 375 3.785887 TGAAAGGGTGCTGGGTATTCTAT 59.214 43.478 0.00 0.00 0.00 1.98
375 376 4.229582 TGAAAGGGTGCTGGGTATTCTATT 59.770 41.667 0.00 0.00 0.00 1.73
376 377 4.881157 AAGGGTGCTGGGTATTCTATTT 57.119 40.909 0.00 0.00 0.00 1.40
377 378 4.170468 AGGGTGCTGGGTATTCTATTTG 57.830 45.455 0.00 0.00 0.00 2.32
378 379 3.785887 AGGGTGCTGGGTATTCTATTTGA 59.214 43.478 0.00 0.00 0.00 2.69
379 380 4.229582 AGGGTGCTGGGTATTCTATTTGAA 59.770 41.667 0.00 0.00 39.24 2.69
380 381 5.103515 AGGGTGCTGGGTATTCTATTTGAAT 60.104 40.000 0.00 0.00 46.22 2.57
381 382 5.598417 GGGTGCTGGGTATTCTATTTGAATT 59.402 40.000 0.00 0.00 42.28 2.17
382 383 6.098266 GGGTGCTGGGTATTCTATTTGAATTT 59.902 38.462 0.00 0.00 42.28 1.82
383 384 7.286775 GGGTGCTGGGTATTCTATTTGAATTTA 59.713 37.037 0.00 0.00 42.28 1.40
384 385 8.860088 GGTGCTGGGTATTCTATTTGAATTTAT 58.140 33.333 0.00 0.00 42.28 1.40
398 399 7.861176 TTTGAATTTATACGGAGTTTGTTGC 57.139 32.000 0.00 0.00 37.78 4.17
399 400 5.945155 TGAATTTATACGGAGTTTGTTGCC 58.055 37.500 0.00 0.00 37.78 4.52
400 401 5.708230 TGAATTTATACGGAGTTTGTTGCCT 59.292 36.000 0.00 0.00 37.78 4.75
401 402 6.879993 TGAATTTATACGGAGTTTGTTGCCTA 59.120 34.615 0.00 0.00 37.78 3.93
402 403 7.554835 TGAATTTATACGGAGTTTGTTGCCTAT 59.445 33.333 0.00 0.00 37.78 2.57
403 404 6.671614 TTTATACGGAGTTTGTTGCCTATG 57.328 37.500 0.00 0.00 37.78 2.23
404 405 2.561478 ACGGAGTTTGTTGCCTATGT 57.439 45.000 0.00 0.00 37.78 2.29
405 406 2.423577 ACGGAGTTTGTTGCCTATGTC 58.576 47.619 0.00 0.00 37.78 3.06
406 407 2.224426 ACGGAGTTTGTTGCCTATGTCA 60.224 45.455 0.00 0.00 37.78 3.58
407 408 2.811431 CGGAGTTTGTTGCCTATGTCAA 59.189 45.455 0.00 0.00 0.00 3.18
408 409 3.120199 CGGAGTTTGTTGCCTATGTCAAG 60.120 47.826 0.00 0.00 0.00 3.02
409 410 3.821033 GGAGTTTGTTGCCTATGTCAAGT 59.179 43.478 0.00 0.00 0.00 3.16
410 411 5.001232 GGAGTTTGTTGCCTATGTCAAGTA 58.999 41.667 0.00 0.00 0.00 2.24
411 412 5.648092 GGAGTTTGTTGCCTATGTCAAGTAT 59.352 40.000 0.00 0.00 0.00 2.12
412 413 6.151144 GGAGTTTGTTGCCTATGTCAAGTATT 59.849 38.462 0.00 0.00 0.00 1.89
429 430 7.038926 CAAGTATTGTTCTAGCGATAATCGG 57.961 40.000 0.00 0.00 42.34 4.18
430 431 5.162075 AGTATTGTTCTAGCGATAATCGGC 58.838 41.667 0.00 0.00 40.84 5.54
431 432 3.446310 TTGTTCTAGCGATAATCGGCA 57.554 42.857 0.00 0.00 40.84 5.69
432 433 3.446310 TGTTCTAGCGATAATCGGCAA 57.554 42.857 0.00 0.00 40.84 4.52
433 434 3.787785 TGTTCTAGCGATAATCGGCAAA 58.212 40.909 0.00 0.00 40.84 3.68
434 435 3.802139 TGTTCTAGCGATAATCGGCAAAG 59.198 43.478 0.00 0.00 40.84 2.77
435 436 4.049186 GTTCTAGCGATAATCGGCAAAGA 58.951 43.478 0.00 0.00 40.84 2.52
436 437 3.639538 TCTAGCGATAATCGGCAAAGAC 58.360 45.455 0.00 0.00 40.84 3.01
437 438 1.583054 AGCGATAATCGGCAAAGACC 58.417 50.000 0.00 0.00 40.84 3.85
438 439 0.586802 GCGATAATCGGCAAAGACCC 59.413 55.000 0.00 0.00 40.84 4.46
439 440 0.859232 CGATAATCGGCAAAGACCCG 59.141 55.000 0.00 0.00 46.88 5.28
440 441 1.226746 GATAATCGGCAAAGACCCGG 58.773 55.000 0.00 0.00 45.60 5.73
441 442 0.818040 ATAATCGGCAAAGACCCGGC 60.818 55.000 0.00 0.00 45.60 6.13
459 460 4.675029 GGCACCGCGTGTACCAGT 62.675 66.667 4.92 0.00 35.75 4.00
460 461 2.259204 GCACCGCGTGTACCAGTA 59.741 61.111 4.92 0.00 35.75 2.74
461 462 1.373246 GCACCGCGTGTACCAGTAA 60.373 57.895 4.92 0.00 35.75 2.24
462 463 0.945265 GCACCGCGTGTACCAGTAAA 60.945 55.000 4.92 0.00 35.75 2.01
463 464 1.717194 CACCGCGTGTACCAGTAAAT 58.283 50.000 4.92 0.00 0.00 1.40
464 465 2.878580 CACCGCGTGTACCAGTAAATA 58.121 47.619 4.92 0.00 0.00 1.40
465 466 2.855963 CACCGCGTGTACCAGTAAATAG 59.144 50.000 4.92 0.00 0.00 1.73
466 467 2.159198 ACCGCGTGTACCAGTAAATAGG 60.159 50.000 4.92 0.00 0.00 2.57
467 468 1.856597 CGCGTGTACCAGTAAATAGGC 59.143 52.381 0.00 0.00 0.00 3.93
468 469 2.207590 GCGTGTACCAGTAAATAGGCC 58.792 52.381 0.00 0.00 0.00 5.19
469 470 2.466846 CGTGTACCAGTAAATAGGCCG 58.533 52.381 0.00 0.00 0.00 6.13
470 471 2.099592 CGTGTACCAGTAAATAGGCCGA 59.900 50.000 0.00 0.00 0.00 5.54
471 472 3.714391 GTGTACCAGTAAATAGGCCGAG 58.286 50.000 0.00 0.00 0.00 4.63
472 473 3.131755 GTGTACCAGTAAATAGGCCGAGT 59.868 47.826 0.00 0.00 0.00 4.18
473 474 2.981859 ACCAGTAAATAGGCCGAGTG 57.018 50.000 0.00 0.00 0.00 3.51
474 475 1.485066 ACCAGTAAATAGGCCGAGTGG 59.515 52.381 13.65 13.65 38.22 4.00
475 476 1.485066 CCAGTAAATAGGCCGAGTGGT 59.515 52.381 0.00 0.00 37.67 4.16
476 477 2.093128 CCAGTAAATAGGCCGAGTGGTT 60.093 50.000 0.00 0.00 37.67 3.67
477 478 3.606687 CAGTAAATAGGCCGAGTGGTTT 58.393 45.455 0.00 0.00 37.67 3.27
478 479 4.007659 CAGTAAATAGGCCGAGTGGTTTT 58.992 43.478 0.00 0.00 37.67 2.43
479 480 4.457949 CAGTAAATAGGCCGAGTGGTTTTT 59.542 41.667 0.00 0.00 37.67 1.94
480 481 5.644636 CAGTAAATAGGCCGAGTGGTTTTTA 59.355 40.000 0.00 0.00 37.67 1.52
481 482 5.878669 AGTAAATAGGCCGAGTGGTTTTTAG 59.121 40.000 0.00 0.00 37.67 1.85
482 483 4.563140 AATAGGCCGAGTGGTTTTTAGA 57.437 40.909 0.00 0.00 37.67 2.10
483 484 2.943036 AGGCCGAGTGGTTTTTAGAA 57.057 45.000 0.00 0.00 37.67 2.10
484 485 2.779506 AGGCCGAGTGGTTTTTAGAAG 58.220 47.619 0.00 0.00 37.67 2.85
485 486 1.810755 GGCCGAGTGGTTTTTAGAAGG 59.189 52.381 0.00 0.00 37.67 3.46
486 487 2.501261 GCCGAGTGGTTTTTAGAAGGT 58.499 47.619 0.00 0.00 37.67 3.50
487 488 3.557686 GGCCGAGTGGTTTTTAGAAGGTA 60.558 47.826 0.00 0.00 37.67 3.08
488 489 3.434641 GCCGAGTGGTTTTTAGAAGGTAC 59.565 47.826 0.00 0.00 37.67 3.34
489 490 4.801914 GCCGAGTGGTTTTTAGAAGGTACT 60.802 45.833 0.00 0.00 37.91 2.73
490 491 4.928020 CCGAGTGGTTTTTAGAAGGTACTC 59.072 45.833 0.00 0.00 38.49 2.59
491 492 5.279356 CCGAGTGGTTTTTAGAAGGTACTCT 60.279 44.000 0.00 0.00 38.49 3.24
492 493 6.071728 CCGAGTGGTTTTTAGAAGGTACTCTA 60.072 42.308 0.00 0.00 38.49 2.43
493 494 6.805760 CGAGTGGTTTTTAGAAGGTACTCTAC 59.194 42.308 0.00 0.00 38.49 2.59
503 504 2.438800 GGTACTCTACCCAGCAGAGA 57.561 55.000 6.38 0.00 41.80 3.10
504 505 2.303175 GGTACTCTACCCAGCAGAGAG 58.697 57.143 6.38 0.00 41.80 3.20
505 506 1.679153 GTACTCTACCCAGCAGAGAGC 59.321 57.143 6.38 0.00 41.80 4.09
516 517 0.450983 GCAGAGAGCCTCAATGTTGC 59.549 55.000 0.00 2.46 37.23 4.17
517 518 0.725686 CAGAGAGCCTCAATGTTGCG 59.274 55.000 0.00 0.00 32.06 4.85
518 519 0.322975 AGAGAGCCTCAATGTTGCGT 59.677 50.000 0.00 0.00 32.06 5.24
519 520 1.550524 AGAGAGCCTCAATGTTGCGTA 59.449 47.619 0.00 0.00 32.06 4.42
520 521 1.661112 GAGAGCCTCAATGTTGCGTAC 59.339 52.381 0.00 0.00 0.00 3.67
521 522 0.727398 GAGCCTCAATGTTGCGTACC 59.273 55.000 0.00 0.00 0.00 3.34
522 523 0.676782 AGCCTCAATGTTGCGTACCC 60.677 55.000 0.00 0.00 0.00 3.69
523 524 1.977594 GCCTCAATGTTGCGTACCCG 61.978 60.000 0.00 0.00 37.07 5.28
524 525 0.672401 CCTCAATGTTGCGTACCCGT 60.672 55.000 0.00 0.00 36.15 5.28
525 526 1.404449 CCTCAATGTTGCGTACCCGTA 60.404 52.381 0.00 0.00 36.15 4.02
526 527 2.339418 CTCAATGTTGCGTACCCGTAA 58.661 47.619 0.00 0.00 36.30 3.18
527 528 2.339418 TCAATGTTGCGTACCCGTAAG 58.661 47.619 0.00 0.00 39.36 2.34
528 529 2.029200 TCAATGTTGCGTACCCGTAAGA 60.029 45.455 0.00 0.00 39.36 2.10
529 530 2.737783 CAATGTTGCGTACCCGTAAGAA 59.262 45.455 0.00 0.00 39.36 2.52
530 531 2.522836 TGTTGCGTACCCGTAAGAAA 57.477 45.000 0.00 0.00 39.36 2.52
531 532 2.831333 TGTTGCGTACCCGTAAGAAAA 58.169 42.857 0.00 0.00 39.36 2.29
532 533 2.543430 TGTTGCGTACCCGTAAGAAAAC 59.457 45.455 0.00 0.00 39.36 2.43
533 534 2.522836 TGCGTACCCGTAAGAAAACA 57.477 45.000 0.00 0.00 43.02 2.83
534 535 2.134346 TGCGTACCCGTAAGAAAACAC 58.866 47.619 0.00 0.00 43.02 3.32
535 536 2.224018 TGCGTACCCGTAAGAAAACACT 60.224 45.455 0.00 0.00 43.02 3.55
536 537 2.409715 GCGTACCCGTAAGAAAACACTC 59.590 50.000 0.00 0.00 43.02 3.51
537 538 2.989166 CGTACCCGTAAGAAAACACTCC 59.011 50.000 0.00 0.00 43.02 3.85
538 539 3.552684 CGTACCCGTAAGAAAACACTCCA 60.553 47.826 0.00 0.00 43.02 3.86
539 540 2.842457 ACCCGTAAGAAAACACTCCAC 58.158 47.619 0.00 0.00 43.02 4.02
540 541 1.796459 CCCGTAAGAAAACACTCCACG 59.204 52.381 0.00 0.00 43.02 4.94
541 542 2.546373 CCCGTAAGAAAACACTCCACGA 60.546 50.000 0.00 0.00 43.02 4.35
542 543 3.125316 CCGTAAGAAAACACTCCACGAA 58.875 45.455 0.00 0.00 43.02 3.85
543 544 3.744426 CCGTAAGAAAACACTCCACGAAT 59.256 43.478 0.00 0.00 43.02 3.34
544 545 4.925054 CCGTAAGAAAACACTCCACGAATA 59.075 41.667 0.00 0.00 43.02 1.75
545 546 5.061808 CCGTAAGAAAACACTCCACGAATAG 59.938 44.000 0.00 0.00 43.02 1.73
546 547 5.444218 CGTAAGAAAACACTCCACGAATAGC 60.444 44.000 0.00 0.00 43.02 2.97
547 548 3.335579 AGAAAACACTCCACGAATAGCC 58.664 45.455 0.00 0.00 0.00 3.93
548 549 1.722011 AAACACTCCACGAATAGCCG 58.278 50.000 0.00 0.00 0.00 5.52
549 550 0.892755 AACACTCCACGAATAGCCGA 59.107 50.000 0.00 0.00 0.00 5.54
550 551 0.892755 ACACTCCACGAATAGCCGAA 59.107 50.000 0.00 0.00 0.00 4.30
551 552 1.278238 CACTCCACGAATAGCCGAAC 58.722 55.000 0.00 0.00 0.00 3.95
552 553 0.892755 ACTCCACGAATAGCCGAACA 59.107 50.000 0.00 0.00 0.00 3.18
553 554 1.278238 CTCCACGAATAGCCGAACAC 58.722 55.000 0.00 0.00 0.00 3.32
554 555 0.892755 TCCACGAATAGCCGAACACT 59.107 50.000 0.00 0.00 0.00 3.55
555 556 2.093890 TCCACGAATAGCCGAACACTA 58.906 47.619 0.00 0.00 0.00 2.74
556 557 2.492881 TCCACGAATAGCCGAACACTAA 59.507 45.455 0.00 0.00 0.00 2.24
557 558 2.858344 CCACGAATAGCCGAACACTAAG 59.142 50.000 0.00 0.00 0.00 2.18
558 559 2.281762 CACGAATAGCCGAACACTAAGC 59.718 50.000 0.00 0.00 0.00 3.09
559 560 2.094390 ACGAATAGCCGAACACTAAGCA 60.094 45.455 0.00 0.00 0.00 3.91
572 573 6.358030 CGAACACTAAGCAAAGACAGATTTTG 59.642 38.462 0.00 0.00 38.30 2.44
600 601 2.156917 GTGGGCTAAAGGTACAACCAC 58.843 52.381 0.00 0.00 41.95 4.16
620 621 5.616986 ACCACCTTTATAGGGATCCAATCAT 59.383 40.000 15.23 3.08 46.58 2.45
634 635 6.912591 GGATCCAATCATAAATTGTTCACGTC 59.087 38.462 6.95 0.00 0.00 4.34
680 681 4.774660 TTTGTGGGTACAAGGAGTTACA 57.225 40.909 0.00 0.00 46.63 2.41
689 690 2.140717 CAAGGAGTTACACGGTTGTCC 58.859 52.381 0.00 0.00 37.15 4.02
709 710 2.279186 CATGCATGCATGTGCCCG 60.279 61.111 40.30 22.20 46.20 6.13
710 711 3.533105 ATGCATGCATGTGCCCGG 61.533 61.111 31.74 0.00 44.43 5.73
711 712 4.737177 TGCATGCATGTGCCCGGA 62.737 61.111 26.79 0.00 44.43 5.14
712 713 3.221389 GCATGCATGTGCCCGGAT 61.221 61.111 26.79 0.00 41.18 4.18
713 714 2.788640 GCATGCATGTGCCCGGATT 61.789 57.895 26.79 0.00 41.18 3.01
714 715 1.066752 CATGCATGTGCCCGGATTG 59.933 57.895 18.91 0.00 41.18 2.67
715 716 1.076850 ATGCATGTGCCCGGATTGA 60.077 52.632 0.73 0.00 41.18 2.57
716 717 0.683828 ATGCATGTGCCCGGATTGAA 60.684 50.000 0.73 0.00 41.18 2.69
717 718 0.897401 TGCATGTGCCCGGATTGAAA 60.897 50.000 0.73 0.00 41.18 2.69
724 725 1.211709 CCCGGATTGAAAACGCACC 59.788 57.895 0.73 0.00 0.00 5.01
746 747 1.720805 TATCACGAACATGCAAGCGT 58.279 45.000 0.00 0.00 37.48 5.07
748 749 1.154413 CACGAACATGCAAGCGTCC 60.154 57.895 0.00 0.00 34.37 4.79
763 764 1.844771 CGTCCGCCCACATGCATATG 61.845 60.000 0.00 0.00 40.24 1.78
768 769 1.394572 CGCCCACATGCATATGTATCG 59.605 52.381 3.92 0.59 45.53 2.92
800 801 3.317608 ACGTACGTGAATGTAGCGG 57.682 52.632 22.14 0.00 0.00 5.52
889 3334 8.999431 GGTGAAAAACTCTTGATAGATTGTGTA 58.001 33.333 0.00 0.00 0.00 2.90
988 3547 3.064207 GTCACGTGCCAAAGTCTCATAA 58.936 45.455 11.67 0.00 0.00 1.90
997 3643 3.191371 CCAAAGTCTCATAAACCAGCACC 59.809 47.826 0.00 0.00 0.00 5.01
1015 3661 0.179029 CCCACTATAAACAGCCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
1043 3691 3.371063 CCTGGCAAGGCAGCACAG 61.371 66.667 17.24 8.33 36.56 3.66
1046 3694 4.052229 GGCAAGGCAGCACAGCAG 62.052 66.667 0.00 0.00 35.83 4.24
1047 3695 4.719369 GCAAGGCAGCACAGCAGC 62.719 66.667 0.00 0.00 40.31 5.25
1050 3698 2.341101 AAGGCAGCACAGCAGCATC 61.341 57.895 8.58 0.00 42.80 3.91
1078 3737 2.986842 GAACGATCGACTGCATCTTG 57.013 50.000 24.34 0.00 0.00 3.02
1419 4085 4.682334 TCGCCACCTACCCGGACA 62.682 66.667 0.73 0.00 36.31 4.02
1502 4168 0.393944 TCTACCTCGTCGCCATCAGT 60.394 55.000 0.00 0.00 0.00 3.41
1610 4276 0.975040 AGCTCTTCATCGTCCTGGCT 60.975 55.000 0.00 0.00 0.00 4.75
1642 4308 4.729918 GCCCACCACCTGGCTCAG 62.730 72.222 0.00 0.00 44.46 3.35
1746 4412 2.238847 CTCTGAATCCGGGTTCCGCA 62.239 60.000 24.55 6.06 46.86 5.69
1747 4413 2.046700 TGAATCCGGGTTCCGCAC 60.047 61.111 24.55 0.01 46.86 5.34
1822 4488 2.360350 CTGCTTCACCGGCCATGT 60.360 61.111 0.00 0.00 0.00 3.21
1884 4550 0.035881 CTTCTCCCAAGTGCTGCTCA 59.964 55.000 0.00 0.00 0.00 4.26
1902 4568 2.780094 ATCTCCTCGGTGCTCTGCG 61.780 63.158 0.00 0.00 0.00 5.18
1952 4618 2.156098 GGCTACCTCATCTACGGAGAG 58.844 57.143 2.53 0.00 34.35 3.20
2360 7429 0.317160 TCACTGGCACCTACACTTCG 59.683 55.000 0.00 0.00 0.00 3.79
2421 8030 6.127535 ACGTACTTCCTTTTAGCTGTGCTATA 60.128 38.462 0.00 0.00 41.01 1.31
2422 8031 6.924060 CGTACTTCCTTTTAGCTGTGCTATAT 59.076 38.462 0.00 0.00 41.01 0.86
2423 8032 8.080417 CGTACTTCCTTTTAGCTGTGCTATATA 58.920 37.037 0.00 0.00 41.01 0.86
2465 10781 1.641577 AACAACCGAGCGATCTTAGC 58.358 50.000 0.00 0.00 0.00 3.09
2507 10928 4.772100 AGGTCATCCGTTGATTTGGAAAAT 59.228 37.500 0.00 0.00 37.90 1.82
2513 10934 7.700234 TCATCCGTTGATTTGGAAAATAAATCG 59.300 33.333 0.00 0.00 43.88 3.34
2520 10941 8.348285 TGATTTGGAAAATAAATCGAGGACTT 57.652 30.769 0.00 0.00 43.88 3.01
2521 10942 9.456147 TGATTTGGAAAATAAATCGAGGACTTA 57.544 29.630 0.00 0.00 43.88 2.24
2558 10979 0.387929 TCGATATTCACACTCGGGGC 59.612 55.000 0.00 0.00 33.38 5.80
2559 10980 0.939577 CGATATTCACACTCGGGGCG 60.940 60.000 0.00 0.00 0.00 6.13
2560 10981 0.600255 GATATTCACACTCGGGGCGG 60.600 60.000 0.00 0.00 0.00 6.13
2561 10982 2.040009 ATATTCACACTCGGGGCGGG 62.040 60.000 0.00 0.00 0.00 6.13
2600 11021 3.005578 GTCAAGGAGGTCACTTTCGTAGT 59.994 47.826 0.00 0.00 37.68 2.73
2640 11092 3.942115 GGGAGTTCTTTCTTAGCATGTCC 59.058 47.826 0.00 0.00 0.00 4.02
2647 11099 0.621571 TCTTAGCATGTCCCTGGCCT 60.622 55.000 3.32 0.00 0.00 5.19
2649 11101 1.071385 CTTAGCATGTCCCTGGCCTAG 59.929 57.143 3.32 0.00 0.00 3.02
2655 11107 0.339859 TGTCCCTGGCCTAGAGATGT 59.660 55.000 3.32 0.00 0.00 3.06
2665 11117 4.202567 TGGCCTAGAGATGTTTTGAACCTT 60.203 41.667 3.32 0.00 0.00 3.50
2666 11118 4.767409 GGCCTAGAGATGTTTTGAACCTTT 59.233 41.667 0.00 0.00 0.00 3.11
2671 11123 5.351458 AGAGATGTTTTGAACCTTTGTTGC 58.649 37.500 0.00 0.00 33.97 4.17
2684 11136 5.540911 ACCTTTGTTGCAAGGTGATAATTG 58.459 37.500 7.02 0.00 46.91 2.32
2685 11137 5.070313 ACCTTTGTTGCAAGGTGATAATTGT 59.930 36.000 7.02 0.00 46.91 2.71
2686 11138 5.634859 CCTTTGTTGCAAGGTGATAATTGTC 59.365 40.000 0.00 0.00 0.00 3.18
2687 11139 6.403866 TTTGTTGCAAGGTGATAATTGTCT 57.596 33.333 0.00 0.00 0.00 3.41
2688 11140 7.309133 CCTTTGTTGCAAGGTGATAATTGTCTA 60.309 37.037 0.00 0.00 0.00 2.59
2689 11141 7.701539 TTGTTGCAAGGTGATAATTGTCTAT 57.298 32.000 0.00 0.00 0.00 1.98
2690 11142 7.087409 TGTTGCAAGGTGATAATTGTCTATG 57.913 36.000 0.00 0.00 0.00 2.23
2742 11201 0.908910 TTTATCGGAGCTGAAGGCCA 59.091 50.000 5.01 0.00 43.05 5.36
2764 11223 2.840651 AGGTTGATCGAAGTCCCATCTT 59.159 45.455 0.00 0.00 0.00 2.40
2772 11231 2.027561 CGAAGTCCCATCTTGGTGGTAA 60.028 50.000 0.00 0.00 37.57 2.85
2812 11271 1.940883 ATTTGGCAGCGCATGGACAG 61.941 55.000 11.47 0.00 0.00 3.51
2830 11289 1.929836 CAGAAGCTCGACTATTGTGGC 59.070 52.381 0.00 0.00 0.00 5.01
2909 11370 1.673808 CTCGCGTAGGGGCTAGGTTT 61.674 60.000 5.77 0.00 42.39 3.27
2910 11371 1.219935 CGCGTAGGGGCTAGGTTTT 59.780 57.895 0.00 0.00 36.55 2.43
2911 11372 0.808847 CGCGTAGGGGCTAGGTTTTC 60.809 60.000 0.00 0.00 36.55 2.29
2913 11374 1.065636 GCGTAGGGGCTAGGTTTTCTT 60.066 52.381 0.00 0.00 0.00 2.52
2977 11439 0.531974 TCCTTGTGTCCGTTCAGTGC 60.532 55.000 0.00 0.00 0.00 4.40
2996 11458 0.672401 CGAGGTGGCTTTTCCGCTAA 60.672 55.000 0.00 0.00 44.77 3.09
3009 11471 0.831307 CCGCTAAGCTCCCTAAAGGT 59.169 55.000 0.00 0.00 36.75 3.50
3060 11522 0.253044 CCTGCTTTTCTCATCGGGGA 59.747 55.000 0.00 0.00 0.00 4.81
3061 11523 1.133976 CCTGCTTTTCTCATCGGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
3068 11537 2.366837 TCATCGGGGATGGTGCCT 60.367 61.111 5.83 0.00 40.15 4.75
3129 11598 2.942804 TGCATCAGGTTTTGTGGAAGA 58.057 42.857 0.00 0.00 0.00 2.87
3131 11600 3.703556 TGCATCAGGTTTTGTGGAAGAAA 59.296 39.130 0.00 0.00 0.00 2.52
3135 11604 3.052036 CAGGTTTTGTGGAAGAAATGCG 58.948 45.455 0.00 0.00 0.00 4.73
3204 11673 3.326836 TGTCGACATTTGGCATCACTA 57.673 42.857 15.76 0.00 0.00 2.74
3228 11697 6.441274 ATGACAAATCAGTGTGACAATTCAC 58.559 36.000 0.00 0.00 44.65 3.18
3286 11762 0.096976 GGCGTTGGATGTGATTGTCG 59.903 55.000 0.00 0.00 0.00 4.35
3290 11766 1.024046 TTGGATGTGATTGTCGGCGG 61.024 55.000 7.21 0.00 0.00 6.13
3296 11772 3.115892 GATTGTCGGCGGCGTTGA 61.116 61.111 31.06 17.40 0.00 3.18
3298 11774 4.893601 TTGTCGGCGGCGTTGACA 62.894 61.111 31.06 24.19 40.62 3.58
3305 11781 1.738099 GCGGCGTTGACATCTCTGT 60.738 57.895 9.37 0.00 38.67 3.41
3323 11799 2.125952 CGATGACTGGCTCGTGCA 60.126 61.111 12.07 0.00 41.91 4.57
3324 11800 1.737735 CGATGACTGGCTCGTGCAA 60.738 57.895 12.07 0.00 41.91 4.08
3415 11891 2.666207 CGGGGGTGTCGGAATTGA 59.334 61.111 0.00 0.00 0.00 2.57
3417 11893 1.683441 GGGGGTGTCGGAATTGACT 59.317 57.895 0.00 0.00 39.64 3.41
3422 11898 3.259902 GGGTGTCGGAATTGACTCTTAC 58.740 50.000 0.00 0.00 39.64 2.34
3429 11905 3.055385 CGGAATTGACTCTTACAAGGGGA 60.055 47.826 0.00 0.00 0.00 4.81
3475 11951 0.233074 ATTGCTAATGCGCGATGTCG 59.767 50.000 12.10 0.00 43.34 4.35
3501 11977 4.365514 TGCTCTATTCCTTGTTTGTGGA 57.634 40.909 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.088104 ACCACTCCTTGACAGTCAGA 57.912 50.000 2.82 0.00 0.00 3.27
1 2 2.918712 AACCACTCCTTGACAGTCAG 57.081 50.000 2.82 0.00 0.00 3.51
2 3 3.491964 CGTAAACCACTCCTTGACAGTCA 60.492 47.826 0.00 0.00 0.00 3.41
3 4 3.057734 CGTAAACCACTCCTTGACAGTC 58.942 50.000 0.00 0.00 0.00 3.51
4 5 2.696707 TCGTAAACCACTCCTTGACAGT 59.303 45.455 0.00 0.00 0.00 3.55
5 6 3.057734 GTCGTAAACCACTCCTTGACAG 58.942 50.000 0.00 0.00 0.00 3.51
6 7 2.431419 TGTCGTAAACCACTCCTTGACA 59.569 45.455 0.00 0.00 33.14 3.58
7 8 3.102052 TGTCGTAAACCACTCCTTGAC 57.898 47.619 0.00 0.00 0.00 3.18
8 9 3.322541 TGATGTCGTAAACCACTCCTTGA 59.677 43.478 0.00 0.00 0.00 3.02
9 10 3.659786 TGATGTCGTAAACCACTCCTTG 58.340 45.455 0.00 0.00 0.00 3.61
10 11 4.062991 GTTGATGTCGTAAACCACTCCTT 58.937 43.478 0.00 0.00 0.00 3.36
11 12 3.070446 TGTTGATGTCGTAAACCACTCCT 59.930 43.478 0.00 0.00 0.00 3.69
12 13 3.395639 TGTTGATGTCGTAAACCACTCC 58.604 45.455 0.00 0.00 0.00 3.85
13 14 3.432252 CCTGTTGATGTCGTAAACCACTC 59.568 47.826 0.00 0.00 0.00 3.51
14 15 3.399330 CCTGTTGATGTCGTAAACCACT 58.601 45.455 0.00 0.00 0.00 4.00
15 16 2.482721 CCCTGTTGATGTCGTAAACCAC 59.517 50.000 0.00 0.00 0.00 4.16
16 17 2.551287 CCCCTGTTGATGTCGTAAACCA 60.551 50.000 0.00 0.00 0.00 3.67
17 18 2.081462 CCCCTGTTGATGTCGTAAACC 58.919 52.381 0.00 0.00 0.00 3.27
18 19 2.081462 CCCCCTGTTGATGTCGTAAAC 58.919 52.381 0.00 0.00 0.00 2.01
19 20 1.979308 TCCCCCTGTTGATGTCGTAAA 59.021 47.619 0.00 0.00 0.00 2.01
20 21 1.276989 GTCCCCCTGTTGATGTCGTAA 59.723 52.381 0.00 0.00 0.00 3.18
21 22 0.899720 GTCCCCCTGTTGATGTCGTA 59.100 55.000 0.00 0.00 0.00 3.43
22 23 1.677552 GTCCCCCTGTTGATGTCGT 59.322 57.895 0.00 0.00 0.00 4.34
23 24 1.447838 CGTCCCCCTGTTGATGTCG 60.448 63.158 0.00 0.00 0.00 4.35
24 25 1.078426 CCGTCCCCCTGTTGATGTC 60.078 63.158 0.00 0.00 0.00 3.06
25 26 2.602676 CCCGTCCCCCTGTTGATGT 61.603 63.158 0.00 0.00 0.00 3.06
26 27 1.847798 TTCCCGTCCCCCTGTTGATG 61.848 60.000 0.00 0.00 0.00 3.07
27 28 1.540367 TTCCCGTCCCCCTGTTGAT 60.540 57.895 0.00 0.00 0.00 2.57
28 29 2.122324 TTCCCGTCCCCCTGTTGA 60.122 61.111 0.00 0.00 0.00 3.18
29 30 2.221299 TCTTCCCGTCCCCCTGTTG 61.221 63.158 0.00 0.00 0.00 3.33
30 31 2.206036 TCTTCCCGTCCCCCTGTT 59.794 61.111 0.00 0.00 0.00 3.16
31 32 2.606826 GTCTTCCCGTCCCCCTGT 60.607 66.667 0.00 0.00 0.00 4.00
32 33 2.284699 AGTCTTCCCGTCCCCCTG 60.285 66.667 0.00 0.00 0.00 4.45
33 34 2.039137 GAGTCTTCCCGTCCCCCT 59.961 66.667 0.00 0.00 0.00 4.79
34 35 3.082055 GGAGTCTTCCCGTCCCCC 61.082 72.222 0.00 0.00 37.53 5.40
35 36 1.689582 ATGGAGTCTTCCCGTCCCC 60.690 63.158 0.00 0.00 43.33 4.81
36 37 1.522569 CATGGAGTCTTCCCGTCCC 59.477 63.158 0.00 0.00 43.33 4.46
37 38 1.153349 GCATGGAGTCTTCCCGTCC 60.153 63.158 0.00 0.00 43.33 4.79
38 39 0.460987 CAGCATGGAGTCTTCCCGTC 60.461 60.000 0.00 0.00 43.33 4.79
39 40 1.599047 CAGCATGGAGTCTTCCCGT 59.401 57.895 0.00 0.00 43.33 5.28
40 41 1.817099 GCAGCATGGAGTCTTCCCG 60.817 63.158 0.00 0.00 43.33 5.14
41 42 0.833287 TAGCAGCATGGAGTCTTCCC 59.167 55.000 0.00 0.00 43.33 3.97
42 43 2.926778 ATAGCAGCATGGAGTCTTCC 57.073 50.000 0.00 0.00 44.31 3.46
43 44 4.599047 ACTATAGCAGCATGGAGTCTTC 57.401 45.455 0.00 0.00 35.86 2.87
44 45 4.895889 TGTACTATAGCAGCATGGAGTCTT 59.104 41.667 0.00 0.00 35.86 3.01
45 46 4.474394 TGTACTATAGCAGCATGGAGTCT 58.526 43.478 0.00 0.00 35.86 3.24
46 47 4.855715 TGTACTATAGCAGCATGGAGTC 57.144 45.455 0.00 0.00 35.86 3.36
47 48 4.835056 TCATGTACTATAGCAGCATGGAGT 59.165 41.667 21.35 0.00 37.92 3.85
48 49 5.397142 TCATGTACTATAGCAGCATGGAG 57.603 43.478 21.35 6.60 37.92 3.86
49 50 5.806654 TTCATGTACTATAGCAGCATGGA 57.193 39.130 21.35 15.29 37.92 3.41
50 51 8.552083 TTATTTCATGTACTATAGCAGCATGG 57.448 34.615 21.35 10.55 37.92 3.66
53 54 9.875691 CCTATTATTTCATGTACTATAGCAGCA 57.124 33.333 0.00 0.00 0.00 4.41
54 55 9.877178 ACCTATTATTTCATGTACTATAGCAGC 57.123 33.333 0.00 0.00 0.00 5.25
74 75 9.551734 AACTGAAAACTACTTTTACGACCTATT 57.448 29.630 0.00 0.00 29.21 1.73
77 78 8.985805 CATAACTGAAAACTACTTTTACGACCT 58.014 33.333 0.00 0.00 29.21 3.85
78 79 8.768019 ACATAACTGAAAACTACTTTTACGACC 58.232 33.333 0.00 0.00 29.21 4.79
95 96 9.176460 TGCTCATGAATGAAATTACATAACTGA 57.824 29.630 0.00 0.00 36.07 3.41
96 97 9.229784 GTGCTCATGAATGAAATTACATAACTG 57.770 33.333 0.00 0.00 36.07 3.16
97 98 8.959548 TGTGCTCATGAATGAAATTACATAACT 58.040 29.630 0.00 0.00 36.07 2.24
98 99 9.571810 TTGTGCTCATGAATGAAATTACATAAC 57.428 29.630 0.00 0.00 36.07 1.89
101 102 9.491675 TTTTTGTGCTCATGAATGAAATTACAT 57.508 25.926 0.00 0.00 36.07 2.29
102 103 8.763356 GTTTTTGTGCTCATGAATGAAATTACA 58.237 29.630 0.00 0.00 36.07 2.41
103 104 8.981647 AGTTTTTGTGCTCATGAATGAAATTAC 58.018 29.630 0.00 0.00 36.07 1.89
105 106 9.715121 ATAGTTTTTGTGCTCATGAATGAAATT 57.285 25.926 0.00 0.00 40.93 1.82
108 109 9.624697 GTTATAGTTTTTGTGCTCATGAATGAA 57.375 29.630 0.00 0.00 36.18 2.57
109 110 9.013229 AGTTATAGTTTTTGTGCTCATGAATGA 57.987 29.630 0.00 0.00 35.16 2.57
113 114 9.665719 TCATAGTTATAGTTTTTGTGCTCATGA 57.334 29.630 0.00 0.00 0.00 3.07
114 115 9.926751 CTCATAGTTATAGTTTTTGTGCTCATG 57.073 33.333 0.00 0.00 0.00 3.07
115 116 9.113838 CCTCATAGTTATAGTTTTTGTGCTCAT 57.886 33.333 0.00 0.00 0.00 2.90
116 117 7.065803 GCCTCATAGTTATAGTTTTTGTGCTCA 59.934 37.037 0.00 0.00 0.00 4.26
117 118 7.281100 AGCCTCATAGTTATAGTTTTTGTGCTC 59.719 37.037 0.00 0.00 0.00 4.26
118 119 7.112779 AGCCTCATAGTTATAGTTTTTGTGCT 58.887 34.615 0.00 0.00 0.00 4.40
119 120 7.065803 TGAGCCTCATAGTTATAGTTTTTGTGC 59.934 37.037 0.00 0.00 0.00 4.57
120 121 8.492673 TGAGCCTCATAGTTATAGTTTTTGTG 57.507 34.615 0.00 0.00 0.00 3.33
127 128 9.988815 CAAGTTTATGAGCCTCATAGTTATAGT 57.011 33.333 13.79 1.02 40.13 2.12
128 129 8.930760 GCAAGTTTATGAGCCTCATAGTTATAG 58.069 37.037 13.79 6.25 40.13 1.31
129 130 7.878127 GGCAAGTTTATGAGCCTCATAGTTATA 59.122 37.037 13.79 0.00 40.13 0.98
130 131 6.712547 GGCAAGTTTATGAGCCTCATAGTTAT 59.287 38.462 13.79 1.38 40.13 1.89
131 132 6.055588 GGCAAGTTTATGAGCCTCATAGTTA 58.944 40.000 13.79 0.00 40.13 2.24
132 133 4.884164 GGCAAGTTTATGAGCCTCATAGTT 59.116 41.667 13.79 7.22 40.13 2.24
133 134 4.455606 GGCAAGTTTATGAGCCTCATAGT 58.544 43.478 13.79 1.74 40.13 2.12
149 150 4.709886 AGGTTACAAGAAAACTTGGCAAGT 59.290 37.500 26.54 26.54 45.46 3.16
150 151 5.262588 AGGTTACAAGAAAACTTGGCAAG 57.737 39.130 25.06 25.06 38.55 4.01
151 152 5.652891 TGTAGGTTACAAGAAAACTTGGCAA 59.347 36.000 13.25 0.00 38.55 4.52
152 153 5.194432 TGTAGGTTACAAGAAAACTTGGCA 58.806 37.500 13.25 0.00 38.55 4.92
153 154 5.761165 TGTAGGTTACAAGAAAACTTGGC 57.239 39.130 13.25 4.62 38.55 4.52
171 172 6.640518 ACCACACATGTCTACCTAATTGTAG 58.359 40.000 0.00 0.00 39.67 2.74
172 173 6.614694 ACCACACATGTCTACCTAATTGTA 57.385 37.500 0.00 0.00 0.00 2.41
173 174 5.499004 ACCACACATGTCTACCTAATTGT 57.501 39.130 0.00 0.00 0.00 2.71
174 175 5.123820 CCAACCACACATGTCTACCTAATTG 59.876 44.000 0.00 0.00 0.00 2.32
175 176 5.013704 TCCAACCACACATGTCTACCTAATT 59.986 40.000 0.00 0.00 0.00 1.40
176 177 4.534500 TCCAACCACACATGTCTACCTAAT 59.466 41.667 0.00 0.00 0.00 1.73
177 178 3.904965 TCCAACCACACATGTCTACCTAA 59.095 43.478 0.00 0.00 0.00 2.69
178 179 3.512496 TCCAACCACACATGTCTACCTA 58.488 45.455 0.00 0.00 0.00 3.08
179 180 2.334977 TCCAACCACACATGTCTACCT 58.665 47.619 0.00 0.00 0.00 3.08
180 181 2.851263 TCCAACCACACATGTCTACC 57.149 50.000 0.00 0.00 0.00 3.18
181 182 5.335661 GGATTTTCCAACCACACATGTCTAC 60.336 44.000 0.00 0.00 36.28 2.59
182 183 4.764823 GGATTTTCCAACCACACATGTCTA 59.235 41.667 0.00 0.00 36.28 2.59
183 184 3.573967 GGATTTTCCAACCACACATGTCT 59.426 43.478 0.00 0.00 36.28 3.41
184 185 3.573967 AGGATTTTCCAACCACACATGTC 59.426 43.478 0.00 0.00 39.61 3.06
185 186 3.573967 GAGGATTTTCCAACCACACATGT 59.426 43.478 0.00 0.00 39.61 3.21
186 187 3.573538 TGAGGATTTTCCAACCACACATG 59.426 43.478 0.00 0.00 39.61 3.21
187 188 3.843422 TGAGGATTTTCCAACCACACAT 58.157 40.909 0.00 0.00 39.61 3.21
188 189 3.304911 TGAGGATTTTCCAACCACACA 57.695 42.857 0.00 0.00 39.61 3.72
189 190 3.826157 TCATGAGGATTTTCCAACCACAC 59.174 43.478 0.00 0.00 39.61 3.82
190 191 3.826157 GTCATGAGGATTTTCCAACCACA 59.174 43.478 0.00 0.00 39.61 4.17
191 192 3.193479 GGTCATGAGGATTTTCCAACCAC 59.807 47.826 0.00 0.00 39.61 4.16
192 193 3.430453 GGTCATGAGGATTTTCCAACCA 58.570 45.455 0.00 0.00 39.61 3.67
193 194 2.760650 GGGTCATGAGGATTTTCCAACC 59.239 50.000 0.00 0.00 39.61 3.77
194 195 3.430453 TGGGTCATGAGGATTTTCCAAC 58.570 45.455 0.00 0.00 39.61 3.77
195 196 3.824001 TGGGTCATGAGGATTTTCCAA 57.176 42.857 0.00 0.00 39.61 3.53
196 197 3.181424 TGTTGGGTCATGAGGATTTTCCA 60.181 43.478 0.00 0.00 39.61 3.53
197 198 3.430453 TGTTGGGTCATGAGGATTTTCC 58.570 45.455 0.00 0.00 36.58 3.13
198 199 4.082125 ACTGTTGGGTCATGAGGATTTTC 58.918 43.478 0.00 0.00 0.00 2.29
199 200 4.118168 ACTGTTGGGTCATGAGGATTTT 57.882 40.909 0.00 0.00 0.00 1.82
200 201 3.814504 ACTGTTGGGTCATGAGGATTT 57.185 42.857 0.00 0.00 0.00 2.17
201 202 3.181429 ACAACTGTTGGGTCATGAGGATT 60.181 43.478 23.15 0.00 34.12 3.01
202 203 2.376518 ACAACTGTTGGGTCATGAGGAT 59.623 45.455 23.15 0.00 34.12 3.24
203 204 1.774254 ACAACTGTTGGGTCATGAGGA 59.226 47.619 23.15 0.00 34.12 3.71
204 205 2.276732 ACAACTGTTGGGTCATGAGG 57.723 50.000 23.15 0.00 34.12 3.86
205 206 4.836825 AGATACAACTGTTGGGTCATGAG 58.163 43.478 23.15 0.00 34.12 2.90
206 207 4.908601 AGATACAACTGTTGGGTCATGA 57.091 40.909 23.15 0.00 34.12 3.07
207 208 6.348498 TCATAGATACAACTGTTGGGTCATG 58.652 40.000 23.15 20.51 34.12 3.07
208 209 6.560003 TCATAGATACAACTGTTGGGTCAT 57.440 37.500 23.15 11.14 34.12 3.06
209 210 6.170506 GTTCATAGATACAACTGTTGGGTCA 58.829 40.000 23.15 11.66 34.12 4.02
210 211 5.291128 CGTTCATAGATACAACTGTTGGGTC 59.709 44.000 23.15 18.75 34.12 4.46
211 212 5.175859 CGTTCATAGATACAACTGTTGGGT 58.824 41.667 23.15 11.83 34.12 4.51
212 213 5.175859 ACGTTCATAGATACAACTGTTGGG 58.824 41.667 23.15 0.95 34.12 4.12
213 214 6.534059 CAACGTTCATAGATACAACTGTTGG 58.466 40.000 23.15 6.91 34.53 3.77
214 215 6.015504 GCAACGTTCATAGATACAACTGTTG 58.984 40.000 18.44 18.44 37.46 3.33
215 216 5.932303 AGCAACGTTCATAGATACAACTGTT 59.068 36.000 0.00 0.00 0.00 3.16
216 217 5.479306 AGCAACGTTCATAGATACAACTGT 58.521 37.500 0.00 0.00 0.00 3.55
217 218 6.408858 AAGCAACGTTCATAGATACAACTG 57.591 37.500 0.00 0.00 0.00 3.16
218 219 6.128282 CCAAAGCAACGTTCATAGATACAACT 60.128 38.462 0.00 0.00 0.00 3.16
219 220 6.021596 CCAAAGCAACGTTCATAGATACAAC 58.978 40.000 0.00 0.00 0.00 3.32
220 221 5.935206 TCCAAAGCAACGTTCATAGATACAA 59.065 36.000 0.00 0.00 0.00 2.41
221 222 5.483811 TCCAAAGCAACGTTCATAGATACA 58.516 37.500 0.00 0.00 0.00 2.29
222 223 6.417191 TTCCAAAGCAACGTTCATAGATAC 57.583 37.500 0.00 0.00 0.00 2.24
223 224 8.725405 TTATTCCAAAGCAACGTTCATAGATA 57.275 30.769 0.00 0.00 0.00 1.98
224 225 7.624360 TTATTCCAAAGCAACGTTCATAGAT 57.376 32.000 0.00 0.00 0.00 1.98
225 226 7.441890 TTTATTCCAAAGCAACGTTCATAGA 57.558 32.000 0.00 0.00 0.00 1.98
226 227 8.514136 TTTTTATTCCAAAGCAACGTTCATAG 57.486 30.769 0.00 0.00 0.00 2.23
227 228 8.514136 CTTTTTATTCCAAAGCAACGTTCATA 57.486 30.769 0.00 0.00 0.00 2.15
228 229 7.406799 CTTTTTATTCCAAAGCAACGTTCAT 57.593 32.000 0.00 0.00 0.00 2.57
229 230 6.820470 CTTTTTATTCCAAAGCAACGTTCA 57.180 33.333 0.00 0.00 0.00 3.18
238 239 8.822652 AACTCATCAAGCTTTTTATTCCAAAG 57.177 30.769 0.00 0.00 34.80 2.77
239 240 9.612066 AAAACTCATCAAGCTTTTTATTCCAAA 57.388 25.926 0.00 0.00 0.00 3.28
240 241 9.260002 GAAAACTCATCAAGCTTTTTATTCCAA 57.740 29.630 0.00 0.00 0.00 3.53
241 242 8.641541 AGAAAACTCATCAAGCTTTTTATTCCA 58.358 29.630 0.00 0.00 0.00 3.53
242 243 9.133627 GAGAAAACTCATCAAGCTTTTTATTCC 57.866 33.333 0.00 0.00 0.00 3.01
243 244 9.683069 TGAGAAAACTCATCAAGCTTTTTATTC 57.317 29.630 0.00 0.00 0.00 1.75
246 247 9.868277 TTTTGAGAAAACTCATCAAGCTTTTTA 57.132 25.926 0.00 0.00 34.64 1.52
247 248 8.776376 TTTTGAGAAAACTCATCAAGCTTTTT 57.224 26.923 0.00 0.00 34.64 1.94
248 249 8.776376 TTTTTGAGAAAACTCATCAAGCTTTT 57.224 26.923 0.00 0.00 34.64 2.27
275 276 6.986231 CCATAAGTTTGAAGCCTCTTGTTTTT 59.014 34.615 0.00 0.00 0.00 1.94
276 277 6.098266 ACCATAAGTTTGAAGCCTCTTGTTTT 59.902 34.615 0.00 0.00 0.00 2.43
277 278 5.598417 ACCATAAGTTTGAAGCCTCTTGTTT 59.402 36.000 0.00 0.00 0.00 2.83
278 279 5.010012 CACCATAAGTTTGAAGCCTCTTGTT 59.990 40.000 0.00 0.00 0.00 2.83
279 280 4.520492 CACCATAAGTTTGAAGCCTCTTGT 59.480 41.667 0.00 0.00 0.00 3.16
280 281 4.616835 GCACCATAAGTTTGAAGCCTCTTG 60.617 45.833 0.00 0.00 0.00 3.02
281 282 3.507622 GCACCATAAGTTTGAAGCCTCTT 59.492 43.478 0.00 0.00 0.00 2.85
282 283 3.084786 GCACCATAAGTTTGAAGCCTCT 58.915 45.455 0.00 0.00 0.00 3.69
283 284 3.084786 AGCACCATAAGTTTGAAGCCTC 58.915 45.455 0.00 0.00 0.00 4.70
284 285 3.160679 AGCACCATAAGTTTGAAGCCT 57.839 42.857 0.00 0.00 0.00 4.58
285 286 3.942130 AAGCACCATAAGTTTGAAGCC 57.058 42.857 0.00 0.00 0.00 4.35
286 287 5.629079 ACTAAGCACCATAAGTTTGAAGC 57.371 39.130 0.00 0.00 0.00 3.86
314 315 9.939424 GTTCCTACCTCCCAGTATATATCTATT 57.061 37.037 0.00 0.00 0.00 1.73
315 316 9.081508 TGTTCCTACCTCCCAGTATATATCTAT 57.918 37.037 0.00 0.00 0.00 1.98
316 317 8.472682 TGTTCCTACCTCCCAGTATATATCTA 57.527 38.462 0.00 0.00 0.00 1.98
317 318 7.358255 TGTTCCTACCTCCCAGTATATATCT 57.642 40.000 0.00 0.00 0.00 1.98
318 319 7.070074 CCATGTTCCTACCTCCCAGTATATATC 59.930 44.444 0.00 0.00 0.00 1.63
319 320 6.903534 CCATGTTCCTACCTCCCAGTATATAT 59.096 42.308 0.00 0.00 0.00 0.86
320 321 6.261435 CCATGTTCCTACCTCCCAGTATATA 58.739 44.000 0.00 0.00 0.00 0.86
321 322 5.094387 CCATGTTCCTACCTCCCAGTATAT 58.906 45.833 0.00 0.00 0.00 0.86
322 323 4.489737 CCATGTTCCTACCTCCCAGTATA 58.510 47.826 0.00 0.00 0.00 1.47
323 324 3.318313 CCATGTTCCTACCTCCCAGTAT 58.682 50.000 0.00 0.00 0.00 2.12
324 325 2.759355 CCATGTTCCTACCTCCCAGTA 58.241 52.381 0.00 0.00 0.00 2.74
325 326 1.584724 CCATGTTCCTACCTCCCAGT 58.415 55.000 0.00 0.00 0.00 4.00
326 327 0.181350 GCCATGTTCCTACCTCCCAG 59.819 60.000 0.00 0.00 0.00 4.45
327 328 1.622607 CGCCATGTTCCTACCTCCCA 61.623 60.000 0.00 0.00 0.00 4.37
328 329 1.146263 CGCCATGTTCCTACCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
329 330 0.462047 CACGCCATGTTCCTACCTCC 60.462 60.000 0.00 0.00 0.00 4.30
330 331 0.535335 TCACGCCATGTTCCTACCTC 59.465 55.000 0.00 0.00 0.00 3.85
331 332 0.537188 CTCACGCCATGTTCCTACCT 59.463 55.000 0.00 0.00 0.00 3.08
332 333 1.090052 GCTCACGCCATGTTCCTACC 61.090 60.000 0.00 0.00 0.00 3.18
333 334 0.108138 AGCTCACGCCATGTTCCTAC 60.108 55.000 0.00 0.00 36.60 3.18
334 335 0.108186 CAGCTCACGCCATGTTCCTA 60.108 55.000 0.00 0.00 36.60 2.94
335 336 1.376424 CAGCTCACGCCATGTTCCT 60.376 57.895 0.00 0.00 36.60 3.36
336 337 0.955428 TTCAGCTCACGCCATGTTCC 60.955 55.000 0.00 0.00 36.60 3.62
337 338 0.874390 TTTCAGCTCACGCCATGTTC 59.126 50.000 0.00 0.00 36.60 3.18
338 339 0.877071 CTTTCAGCTCACGCCATGTT 59.123 50.000 0.00 0.00 36.60 2.71
339 340 0.957395 CCTTTCAGCTCACGCCATGT 60.957 55.000 0.00 0.00 36.60 3.21
340 341 1.651240 CCCTTTCAGCTCACGCCATG 61.651 60.000 0.00 0.00 36.60 3.66
341 342 1.377725 CCCTTTCAGCTCACGCCAT 60.378 57.895 0.00 0.00 36.60 4.40
342 343 2.032528 CCCTTTCAGCTCACGCCA 59.967 61.111 0.00 0.00 36.60 5.69
343 344 2.032681 ACCCTTTCAGCTCACGCC 59.967 61.111 0.00 0.00 36.60 5.68
344 345 2.970974 GCACCCTTTCAGCTCACGC 61.971 63.158 0.00 0.00 0.00 5.34
345 346 1.302033 AGCACCCTTTCAGCTCACG 60.302 57.895 0.00 0.00 32.05 4.35
346 347 1.239968 CCAGCACCCTTTCAGCTCAC 61.240 60.000 0.00 0.00 36.26 3.51
347 348 1.073722 CCAGCACCCTTTCAGCTCA 59.926 57.895 0.00 0.00 36.26 4.26
348 349 1.676967 CCCAGCACCCTTTCAGCTC 60.677 63.158 0.00 0.00 36.26 4.09
349 350 1.133809 TACCCAGCACCCTTTCAGCT 61.134 55.000 0.00 0.00 39.63 4.24
350 351 0.034089 ATACCCAGCACCCTTTCAGC 60.034 55.000 0.00 0.00 0.00 4.26
351 352 2.025887 AGAATACCCAGCACCCTTTCAG 60.026 50.000 0.00 0.00 0.00 3.02
352 353 1.992557 AGAATACCCAGCACCCTTTCA 59.007 47.619 0.00 0.00 0.00 2.69
353 354 2.808906 AGAATACCCAGCACCCTTTC 57.191 50.000 0.00 0.00 0.00 2.62
354 355 4.881157 AATAGAATACCCAGCACCCTTT 57.119 40.909 0.00 0.00 0.00 3.11
355 356 4.229582 TCAAATAGAATACCCAGCACCCTT 59.770 41.667 0.00 0.00 0.00 3.95
356 357 3.785887 TCAAATAGAATACCCAGCACCCT 59.214 43.478 0.00 0.00 0.00 4.34
357 358 4.164843 TCAAATAGAATACCCAGCACCC 57.835 45.455 0.00 0.00 0.00 4.61
358 359 6.715347 AATTCAAATAGAATACCCAGCACC 57.285 37.500 0.00 0.00 46.09 5.01
372 373 9.562583 GCAACAAACTCCGTATAAATTCAAATA 57.437 29.630 0.00 0.00 0.00 1.40
373 374 7.544217 GGCAACAAACTCCGTATAAATTCAAAT 59.456 33.333 0.00 0.00 0.00 2.32
374 375 6.864165 GGCAACAAACTCCGTATAAATTCAAA 59.136 34.615 0.00 0.00 0.00 2.69
375 376 6.207810 AGGCAACAAACTCCGTATAAATTCAA 59.792 34.615 0.00 0.00 41.41 2.69
376 377 5.708230 AGGCAACAAACTCCGTATAAATTCA 59.292 36.000 0.00 0.00 41.41 2.57
377 378 6.190954 AGGCAACAAACTCCGTATAAATTC 57.809 37.500 0.00 0.00 41.41 2.17
378 379 7.338449 ACATAGGCAACAAACTCCGTATAAATT 59.662 33.333 0.00 0.00 41.41 1.82
379 380 6.826741 ACATAGGCAACAAACTCCGTATAAAT 59.173 34.615 0.00 0.00 41.41 1.40
380 381 6.174760 ACATAGGCAACAAACTCCGTATAAA 58.825 36.000 0.00 0.00 41.41 1.40
381 382 5.736813 ACATAGGCAACAAACTCCGTATAA 58.263 37.500 0.00 0.00 41.41 0.98
382 383 5.105269 TGACATAGGCAACAAACTCCGTATA 60.105 40.000 0.00 0.00 41.41 1.47
383 384 4.189231 GACATAGGCAACAAACTCCGTAT 58.811 43.478 0.00 0.00 41.41 3.06
384 385 3.007074 TGACATAGGCAACAAACTCCGTA 59.993 43.478 0.00 0.00 41.41 4.02
385 386 2.224426 TGACATAGGCAACAAACTCCGT 60.224 45.455 0.00 0.00 41.41 4.69
386 387 2.422597 TGACATAGGCAACAAACTCCG 58.577 47.619 0.00 0.00 41.41 4.63
387 388 3.821033 ACTTGACATAGGCAACAAACTCC 59.179 43.478 0.00 0.00 41.41 3.85
388 389 6.743575 ATACTTGACATAGGCAACAAACTC 57.256 37.500 0.00 0.00 41.41 3.01
389 390 6.490040 ACAATACTTGACATAGGCAACAAACT 59.510 34.615 0.00 0.00 41.41 2.66
390 391 6.677913 ACAATACTTGACATAGGCAACAAAC 58.322 36.000 0.00 0.00 41.41 2.93
391 392 6.892658 ACAATACTTGACATAGGCAACAAA 57.107 33.333 0.00 0.00 41.41 2.83
392 393 6.714810 AGAACAATACTTGACATAGGCAACAA 59.285 34.615 0.00 0.00 41.41 2.83
393 394 6.237901 AGAACAATACTTGACATAGGCAACA 58.762 36.000 0.00 0.00 41.41 3.33
394 395 6.743575 AGAACAATACTTGACATAGGCAAC 57.256 37.500 0.00 0.00 0.00 4.17
395 396 6.538742 GCTAGAACAATACTTGACATAGGCAA 59.461 38.462 0.00 0.00 0.00 4.52
396 397 6.049149 GCTAGAACAATACTTGACATAGGCA 58.951 40.000 0.00 0.00 0.00 4.75
397 398 5.175856 CGCTAGAACAATACTTGACATAGGC 59.824 44.000 0.00 0.00 0.00 3.93
398 399 6.504398 TCGCTAGAACAATACTTGACATAGG 58.496 40.000 0.00 0.00 0.00 2.57
399 400 9.678941 TTATCGCTAGAACAATACTTGACATAG 57.321 33.333 0.00 0.00 0.00 2.23
401 402 9.197694 GATTATCGCTAGAACAATACTTGACAT 57.802 33.333 0.00 0.00 0.00 3.06
402 403 7.378728 CGATTATCGCTAGAACAATACTTGACA 59.621 37.037 0.46 0.00 31.14 3.58
403 404 7.148950 CCGATTATCGCTAGAACAATACTTGAC 60.149 40.741 9.34 0.00 38.82 3.18
404 405 6.861572 CCGATTATCGCTAGAACAATACTTGA 59.138 38.462 9.34 0.00 38.82 3.02
405 406 6.400091 GCCGATTATCGCTAGAACAATACTTG 60.400 42.308 9.34 0.00 38.82 3.16
406 407 5.634020 GCCGATTATCGCTAGAACAATACTT 59.366 40.000 9.34 0.00 38.82 2.24
407 408 5.162075 GCCGATTATCGCTAGAACAATACT 58.838 41.667 9.34 0.00 38.82 2.12
408 409 4.921515 TGCCGATTATCGCTAGAACAATAC 59.078 41.667 9.34 0.00 38.82 1.89
409 410 5.128992 TGCCGATTATCGCTAGAACAATA 57.871 39.130 9.34 0.00 38.82 1.90
410 411 3.990092 TGCCGATTATCGCTAGAACAAT 58.010 40.909 9.34 0.00 38.82 2.71
411 412 3.446310 TGCCGATTATCGCTAGAACAA 57.554 42.857 9.34 0.00 38.82 2.83
412 413 3.446310 TTGCCGATTATCGCTAGAACA 57.554 42.857 9.34 0.00 38.82 3.18
413 414 4.049186 TCTTTGCCGATTATCGCTAGAAC 58.951 43.478 9.34 0.00 38.82 3.01
414 415 4.049186 GTCTTTGCCGATTATCGCTAGAA 58.951 43.478 9.34 0.71 38.82 2.10
415 416 3.552273 GGTCTTTGCCGATTATCGCTAGA 60.552 47.826 9.34 5.74 38.82 2.43
416 417 2.731976 GGTCTTTGCCGATTATCGCTAG 59.268 50.000 9.34 3.57 38.82 3.42
417 418 2.547218 GGGTCTTTGCCGATTATCGCTA 60.547 50.000 9.34 0.00 38.82 4.26
418 419 1.583054 GGTCTTTGCCGATTATCGCT 58.417 50.000 9.34 0.00 38.82 4.93
419 420 0.586802 GGGTCTTTGCCGATTATCGC 59.413 55.000 9.34 5.66 38.82 4.58
420 421 0.859232 CGGGTCTTTGCCGATTATCG 59.141 55.000 7.74 7.74 40.07 2.92
421 422 1.226746 CCGGGTCTTTGCCGATTATC 58.773 55.000 0.00 0.00 0.00 1.75
422 423 0.818040 GCCGGGTCTTTGCCGATTAT 60.818 55.000 2.18 0.00 0.00 1.28
423 424 1.450669 GCCGGGTCTTTGCCGATTA 60.451 57.895 2.18 0.00 0.00 1.75
424 425 2.750237 GCCGGGTCTTTGCCGATT 60.750 61.111 2.18 0.00 0.00 3.34
443 444 0.945265 TTTACTGGTACACGCGGTGC 60.945 55.000 12.47 9.20 36.98 5.01
444 445 1.717194 ATTTACTGGTACACGCGGTG 58.283 50.000 12.47 9.20 39.75 4.94
445 446 2.159198 CCTATTTACTGGTACACGCGGT 60.159 50.000 12.47 8.38 0.00 5.68
446 447 2.466846 CCTATTTACTGGTACACGCGG 58.533 52.381 12.47 1.27 0.00 6.46
447 448 1.856597 GCCTATTTACTGGTACACGCG 59.143 52.381 3.53 3.53 0.00 6.01
448 449 2.207590 GGCCTATTTACTGGTACACGC 58.792 52.381 0.00 0.00 0.00 5.34
449 450 2.099592 TCGGCCTATTTACTGGTACACG 59.900 50.000 0.00 0.00 0.00 4.49
450 451 3.131755 ACTCGGCCTATTTACTGGTACAC 59.868 47.826 0.00 0.00 0.00 2.90
451 452 3.131577 CACTCGGCCTATTTACTGGTACA 59.868 47.826 0.00 0.00 0.00 2.90
452 453 3.492137 CCACTCGGCCTATTTACTGGTAC 60.492 52.174 0.00 0.00 0.00 3.34
453 454 2.696707 CCACTCGGCCTATTTACTGGTA 59.303 50.000 0.00 0.00 0.00 3.25
454 455 1.485066 CCACTCGGCCTATTTACTGGT 59.515 52.381 0.00 0.00 0.00 4.00
455 456 1.485066 ACCACTCGGCCTATTTACTGG 59.515 52.381 0.00 0.00 34.57 4.00
456 457 2.981859 ACCACTCGGCCTATTTACTG 57.018 50.000 0.00 0.00 34.57 2.74
457 458 3.994931 AAACCACTCGGCCTATTTACT 57.005 42.857 0.00 0.00 34.57 2.24
458 459 5.876460 TCTAAAAACCACTCGGCCTATTTAC 59.124 40.000 0.00 0.00 34.57 2.01
459 460 6.052405 TCTAAAAACCACTCGGCCTATTTA 57.948 37.500 0.00 0.00 34.57 1.40
460 461 4.913784 TCTAAAAACCACTCGGCCTATTT 58.086 39.130 0.00 0.00 34.57 1.40
461 462 4.563140 TCTAAAAACCACTCGGCCTATT 57.437 40.909 0.00 0.00 34.57 1.73
462 463 4.514401 CTTCTAAAAACCACTCGGCCTAT 58.486 43.478 0.00 0.00 34.57 2.57
463 464 3.307199 CCTTCTAAAAACCACTCGGCCTA 60.307 47.826 0.00 0.00 34.57 3.93
464 465 2.552373 CCTTCTAAAAACCACTCGGCCT 60.552 50.000 0.00 0.00 34.57 5.19
465 466 1.810755 CCTTCTAAAAACCACTCGGCC 59.189 52.381 0.00 0.00 34.57 6.13
466 467 2.501261 ACCTTCTAAAAACCACTCGGC 58.499 47.619 0.00 0.00 34.57 5.54
467 468 4.891260 AGTACCTTCTAAAAACCACTCGG 58.109 43.478 0.00 0.00 38.77 4.63
468 469 5.780984 AGAGTACCTTCTAAAAACCACTCG 58.219 41.667 0.00 0.00 36.99 4.18
469 470 7.095910 GGTAGAGTACCTTCTAAAAACCACTC 58.904 42.308 0.00 0.00 45.52 3.51
470 471 7.002250 GGTAGAGTACCTTCTAAAAACCACT 57.998 40.000 0.00 0.00 45.52 4.00
483 484 5.838989 GCTCTCTGCTGGGTAGAGTACCT 62.839 56.522 11.22 0.00 41.82 3.08
484 485 3.591225 GCTCTCTGCTGGGTAGAGTACC 61.591 59.091 11.22 0.00 41.82 3.34
485 486 1.679153 GCTCTCTGCTGGGTAGAGTAC 59.321 57.143 11.22 0.00 41.82 2.73
486 487 1.410365 GGCTCTCTGCTGGGTAGAGTA 60.410 57.143 11.22 0.72 41.82 2.59
487 488 0.686112 GGCTCTCTGCTGGGTAGAGT 60.686 60.000 11.22 0.00 41.82 3.24
488 489 0.396974 AGGCTCTCTGCTGGGTAGAG 60.397 60.000 6.36 6.36 42.35 2.43
489 490 0.396417 GAGGCTCTCTGCTGGGTAGA 60.396 60.000 7.40 0.00 42.39 2.59
490 491 0.685785 TGAGGCTCTCTGCTGGGTAG 60.686 60.000 16.72 0.00 42.39 3.18
491 492 0.252239 TTGAGGCTCTCTGCTGGGTA 60.252 55.000 16.72 0.00 42.39 3.69
492 493 0.913451 ATTGAGGCTCTCTGCTGGGT 60.913 55.000 16.72 0.00 42.39 4.51
493 494 0.464013 CATTGAGGCTCTCTGCTGGG 60.464 60.000 16.72 0.00 42.39 4.45
494 495 0.252479 ACATTGAGGCTCTCTGCTGG 59.748 55.000 16.72 1.16 42.39 4.85
495 496 1.738350 CAACATTGAGGCTCTCTGCTG 59.262 52.381 16.72 10.37 42.39 4.41
496 497 1.949547 GCAACATTGAGGCTCTCTGCT 60.950 52.381 16.72 1.68 42.39 4.24
497 498 0.450983 GCAACATTGAGGCTCTCTGC 59.549 55.000 16.72 12.49 41.94 4.26
498 499 0.725686 CGCAACATTGAGGCTCTCTG 59.274 55.000 16.72 14.62 0.00 3.35
499 500 0.322975 ACGCAACATTGAGGCTCTCT 59.677 50.000 16.72 0.00 31.91 3.10
500 501 1.661112 GTACGCAACATTGAGGCTCTC 59.339 52.381 16.72 0.00 31.91 3.20
501 502 1.676014 GGTACGCAACATTGAGGCTCT 60.676 52.381 16.72 0.00 31.91 4.09
502 503 0.727398 GGTACGCAACATTGAGGCTC 59.273 55.000 7.79 7.79 31.91 4.70
503 504 0.676782 GGGTACGCAACATTGAGGCT 60.677 55.000 4.83 0.00 31.91 4.58
504 505 1.800681 GGGTACGCAACATTGAGGC 59.199 57.895 4.83 0.00 31.91 4.70
505 506 0.672401 ACGGGTACGCAACATTGAGG 60.672 55.000 10.84 0.00 46.04 3.86
506 507 1.999048 TACGGGTACGCAACATTGAG 58.001 50.000 10.84 0.00 46.04 3.02
507 508 2.029200 TCTTACGGGTACGCAACATTGA 60.029 45.455 10.84 0.00 46.04 2.57
508 509 2.339418 TCTTACGGGTACGCAACATTG 58.661 47.619 10.84 0.00 46.04 2.82
509 510 2.747396 TCTTACGGGTACGCAACATT 57.253 45.000 10.84 0.00 46.04 2.71
510 511 2.747396 TTCTTACGGGTACGCAACAT 57.253 45.000 10.84 0.00 46.04 2.71
511 512 2.522836 TTTCTTACGGGTACGCAACA 57.477 45.000 10.84 0.00 46.04 3.33
512 513 2.543430 TGTTTTCTTACGGGTACGCAAC 59.457 45.455 10.84 5.56 46.04 4.17
513 514 2.543430 GTGTTTTCTTACGGGTACGCAA 59.457 45.455 10.84 0.00 46.04 4.85
514 515 2.134346 GTGTTTTCTTACGGGTACGCA 58.866 47.619 10.84 0.00 46.04 5.24
515 516 2.407090 AGTGTTTTCTTACGGGTACGC 58.593 47.619 0.00 0.00 46.04 4.42
517 518 3.742882 GTGGAGTGTTTTCTTACGGGTAC 59.257 47.826 0.00 0.00 0.00 3.34
518 519 3.552684 CGTGGAGTGTTTTCTTACGGGTA 60.553 47.826 0.00 0.00 0.00 3.69
519 520 2.804212 CGTGGAGTGTTTTCTTACGGGT 60.804 50.000 0.00 0.00 0.00 5.28
520 521 1.796459 CGTGGAGTGTTTTCTTACGGG 59.204 52.381 0.00 0.00 0.00 5.28
521 522 2.746269 TCGTGGAGTGTTTTCTTACGG 58.254 47.619 0.00 0.00 32.99 4.02
522 523 4.985044 ATTCGTGGAGTGTTTTCTTACG 57.015 40.909 0.00 0.00 33.22 3.18
523 524 5.163884 GGCTATTCGTGGAGTGTTTTCTTAC 60.164 44.000 0.00 0.00 0.00 2.34
524 525 4.933400 GGCTATTCGTGGAGTGTTTTCTTA 59.067 41.667 0.00 0.00 0.00 2.10
525 526 3.751698 GGCTATTCGTGGAGTGTTTTCTT 59.248 43.478 0.00 0.00 0.00 2.52
526 527 3.335579 GGCTATTCGTGGAGTGTTTTCT 58.664 45.455 0.00 0.00 0.00 2.52
527 528 2.093783 CGGCTATTCGTGGAGTGTTTTC 59.906 50.000 0.00 0.00 0.00 2.29
528 529 2.073816 CGGCTATTCGTGGAGTGTTTT 58.926 47.619 0.00 0.00 0.00 2.43
529 530 1.274167 TCGGCTATTCGTGGAGTGTTT 59.726 47.619 0.00 0.00 0.00 2.83
530 531 0.892755 TCGGCTATTCGTGGAGTGTT 59.107 50.000 0.00 0.00 0.00 3.32
531 532 0.892755 TTCGGCTATTCGTGGAGTGT 59.107 50.000 0.00 0.00 0.00 3.55
532 533 1.278238 GTTCGGCTATTCGTGGAGTG 58.722 55.000 0.00 0.00 0.00 3.51
533 534 0.892755 TGTTCGGCTATTCGTGGAGT 59.107 50.000 0.00 0.00 0.00 3.85
534 535 1.135083 AGTGTTCGGCTATTCGTGGAG 60.135 52.381 0.00 0.00 0.00 3.86
535 536 0.892755 AGTGTTCGGCTATTCGTGGA 59.107 50.000 0.00 0.00 0.00 4.02
536 537 2.572191 TAGTGTTCGGCTATTCGTGG 57.428 50.000 0.00 0.00 0.00 4.94
537 538 2.281762 GCTTAGTGTTCGGCTATTCGTG 59.718 50.000 0.00 0.00 0.00 4.35
538 539 2.094390 TGCTTAGTGTTCGGCTATTCGT 60.094 45.455 0.00 0.00 0.00 3.85
539 540 2.536365 TGCTTAGTGTTCGGCTATTCG 58.464 47.619 0.00 0.00 0.00 3.34
540 541 4.630069 TCTTTGCTTAGTGTTCGGCTATTC 59.370 41.667 0.00 0.00 0.00 1.75
541 542 4.392138 GTCTTTGCTTAGTGTTCGGCTATT 59.608 41.667 0.00 0.00 0.00 1.73
542 543 3.933332 GTCTTTGCTTAGTGTTCGGCTAT 59.067 43.478 0.00 0.00 0.00 2.97
543 544 3.243941 TGTCTTTGCTTAGTGTTCGGCTA 60.244 43.478 0.00 0.00 0.00 3.93
544 545 2.143925 GTCTTTGCTTAGTGTTCGGCT 58.856 47.619 0.00 0.00 0.00 5.52
545 546 1.871039 TGTCTTTGCTTAGTGTTCGGC 59.129 47.619 0.00 0.00 0.00 5.54
546 547 3.390135 TCTGTCTTTGCTTAGTGTTCGG 58.610 45.455 0.00 0.00 0.00 4.30
547 548 5.597813 AATCTGTCTTTGCTTAGTGTTCG 57.402 39.130 0.00 0.00 0.00 3.95
548 549 7.614674 CAAAATCTGTCTTTGCTTAGTGTTC 57.385 36.000 0.00 0.00 0.00 3.18
558 559 3.054878 GGTGCAGCAAAATCTGTCTTTG 58.945 45.455 11.86 0.00 36.49 2.77
559 560 2.287788 CGGTGCAGCAAAATCTGTCTTT 60.288 45.455 17.33 0.00 36.49 2.52
572 573 2.671619 TTTAGCCCACGGTGCAGC 60.672 61.111 5.64 5.64 0.00 5.25
576 577 0.322322 TGTACCTTTAGCCCACGGTG 59.678 55.000 0.00 0.00 0.00 4.94
605 606 9.082313 GTGAACAATTTATGATTGGATCCCTAT 57.918 33.333 9.90 2.36 33.56 2.57
620 621 7.095940 CGTTTTAGAGAGGACGTGAACAATTTA 60.096 37.037 0.00 0.00 0.00 1.40
627 628 2.029649 CCCGTTTTAGAGAGGACGTGAA 60.030 50.000 0.00 0.00 33.95 3.18
634 635 2.101082 GACCTAGCCCGTTTTAGAGAGG 59.899 54.545 0.00 0.00 0.00 3.69
680 681 1.303561 ATGCATGCAGGACAACCGT 60.304 52.632 26.69 2.26 41.83 4.83
700 701 1.732077 CGTTTTCAATCCGGGCACATG 60.732 52.381 0.00 0.00 0.00 3.21
701 702 0.525761 CGTTTTCAATCCGGGCACAT 59.474 50.000 0.00 0.00 0.00 3.21
702 703 1.953017 CGTTTTCAATCCGGGCACA 59.047 52.632 0.00 0.00 0.00 4.57
703 704 1.443702 GCGTTTTCAATCCGGGCAC 60.444 57.895 0.00 0.00 0.00 5.01
706 707 1.211709 GGTGCGTTTTCAATCCGGG 59.788 57.895 0.00 0.00 0.00 5.73
707 708 1.154301 CGGTGCGTTTTCAATCCGG 60.154 57.895 0.00 0.00 35.25 5.14
708 709 1.572447 ACGGTGCGTTTTCAATCCG 59.428 52.632 0.00 0.00 36.35 4.18
724 725 2.430956 GCTTGCATGTTCGTGATAACG 58.569 47.619 0.00 0.00 31.76 3.18
746 747 0.761802 TACATATGCATGTGGGCGGA 59.238 50.000 24.94 4.64 45.17 5.54
748 749 1.394572 CGATACATATGCATGTGGGCG 59.605 52.381 24.94 19.87 45.17 6.13
763 764 1.019673 TGCTAGGACACGGTCGATAC 58.980 55.000 0.00 0.00 32.65 2.24
800 801 3.332493 TACTTCACCCTCGTCGCGC 62.332 63.158 0.00 0.00 0.00 6.86
889 3334 3.632145 AGAGATTTTGACACGCCAAAGTT 59.368 39.130 0.00 0.00 37.34 2.66
890 3335 3.214328 AGAGATTTTGACACGCCAAAGT 58.786 40.909 0.00 0.00 37.34 2.66
892 3337 3.629855 TCAAGAGATTTTGACACGCCAAA 59.370 39.130 0.00 0.00 32.39 3.28
893 3338 3.210227 TCAAGAGATTTTGACACGCCAA 58.790 40.909 0.00 0.00 32.39 4.52
894 3339 2.844946 TCAAGAGATTTTGACACGCCA 58.155 42.857 0.00 0.00 32.39 5.69
960 3422 4.961511 TGGCACGTGACGGTCTGC 62.962 66.667 22.23 10.34 0.00 4.26
988 3547 3.686016 CTGTTTATAGTGGGTGCTGGTT 58.314 45.455 0.00 0.00 0.00 3.67
997 3643 0.818040 GCCGGGGCTGTTTATAGTGG 60.818 60.000 2.18 0.00 38.26 4.00
1037 3683 0.675837 ACGATTGATGCTGCTGTGCT 60.676 50.000 0.00 0.00 0.00 4.40
1038 3684 0.247974 GACGATTGATGCTGCTGTGC 60.248 55.000 0.00 0.00 0.00 4.57
1040 3688 1.086067 CGGACGATTGATGCTGCTGT 61.086 55.000 0.00 0.00 0.00 4.40
1043 3691 0.026803 GTTCGGACGATTGATGCTGC 59.973 55.000 0.00 0.00 0.00 5.25
1068 3716 1.242076 GAACAGCCACAAGATGCAGT 58.758 50.000 0.00 0.00 0.00 4.40
1070 3718 1.202794 TCTGAACAGCCACAAGATGCA 60.203 47.619 0.00 0.00 0.00 3.96
1078 3737 2.027745 TCTTCCATCTCTGAACAGCCAC 60.028 50.000 0.00 0.00 0.00 5.01
1502 4168 2.291043 GCCCTCGAGGACCAGGAAA 61.291 63.158 33.39 0.00 38.24 3.13
1724 4390 1.196012 GGAACCCGGATTCAGAGACT 58.804 55.000 11.64 0.00 0.00 3.24
1884 4550 2.780094 CGCAGAGCACCGAGGAGAT 61.780 63.158 0.00 0.00 0.00 2.75
1902 4568 0.672711 GTGAACCCGTAGTTGAGGCC 60.673 60.000 0.00 0.00 39.40 5.19
2360 7429 3.347216 AGTGCCTATGATGTCCAACAAC 58.653 45.455 0.00 0.00 0.00 3.32
2423 8032 9.173021 TGTTTTGTTTGTACTATATGCTAGCAT 57.827 29.630 31.60 31.60 40.19 3.79
2465 10781 8.873215 ATGACCTTCACTTTATCTTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
2559 10980 4.847367 CCCAGCAGAATGGCCCCC 62.847 72.222 0.00 0.00 39.17 5.40
2560 10981 4.066139 ACCCAGCAGAATGGCCCC 62.066 66.667 0.00 0.00 39.17 5.80
2561 10982 2.757099 CACCCAGCAGAATGGCCC 60.757 66.667 0.00 0.00 39.17 5.80
2562 10983 2.036256 ACACCCAGCAGAATGGCC 59.964 61.111 0.00 0.00 39.17 5.36
2600 11021 1.644509 CCCACGATCCATATCCTCCA 58.355 55.000 0.00 0.00 0.00 3.86
2602 11023 1.827969 CTCCCCACGATCCATATCCTC 59.172 57.143 0.00 0.00 0.00 3.71
2640 11092 3.634397 TCAAAACATCTCTAGGCCAGG 57.366 47.619 5.01 0.00 0.00 4.45
2647 11099 6.096141 TGCAACAAAGGTTCAAAACATCTCTA 59.904 34.615 0.00 0.00 34.21 2.43
2649 11101 5.108517 TGCAACAAAGGTTCAAAACATCTC 58.891 37.500 0.00 0.00 34.21 2.75
2665 11117 7.362834 CCATAGACAATTATCACCTTGCAACAA 60.363 37.037 0.00 0.00 0.00 2.83
2666 11118 6.095300 CCATAGACAATTATCACCTTGCAACA 59.905 38.462 0.00 0.00 0.00 3.33
2671 11123 4.520492 GGGCCATAGACAATTATCACCTTG 59.480 45.833 4.39 0.00 0.00 3.61
2684 11136 2.109181 GTCAGCCGGGCCATAGAC 59.891 66.667 17.02 14.72 0.00 2.59
2685 11137 3.161450 GGTCAGCCGGGCCATAGA 61.161 66.667 17.02 6.18 0.00 1.98
2686 11138 3.479203 TGGTCAGCCGGGCCATAG 61.479 66.667 17.02 3.58 37.67 2.23
2687 11139 3.792736 GTGGTCAGCCGGGCCATA 61.793 66.667 17.02 0.00 37.67 2.74
2724 11183 0.908910 TTGGCCTTCAGCTCCGATAA 59.091 50.000 3.32 0.00 43.05 1.75
2729 11188 1.075659 AACCTTGGCCTTCAGCTCC 59.924 57.895 3.32 0.00 43.05 4.70
2742 11201 2.840651 AGATGGGACTTCGATCAACCTT 59.159 45.455 0.00 0.00 33.68 3.50
2764 11223 3.733972 CCCCCGCCATTACCACCA 61.734 66.667 0.00 0.00 0.00 4.17
2782 11241 1.738030 GCTGCCAAATCAGGTTGATGC 60.738 52.381 0.00 0.00 37.15 3.91
2784 11243 0.813184 CGCTGCCAAATCAGGTTGAT 59.187 50.000 0.00 0.00 39.09 2.57
2789 11248 1.226859 CATGCGCTGCCAAATCAGG 60.227 57.895 9.73 0.00 34.74 3.86
2812 11271 1.291132 GGCCACAATAGTCGAGCTTC 58.709 55.000 0.00 0.00 0.00 3.86
2830 11289 1.033746 AAGATGCATGTGCGGAAGGG 61.034 55.000 2.46 0.00 45.83 3.95
2839 11298 6.822667 TGTAGTCATTGAAAAGATGCATGT 57.177 33.333 2.46 0.00 0.00 3.21
2897 11357 2.349445 AGTCAAGAAAACCTAGCCCCT 58.651 47.619 0.00 0.00 0.00 4.79
2909 11370 6.879458 GGGTTGAGCTCTTTATTAGTCAAGAA 59.121 38.462 16.19 0.00 0.00 2.52
2910 11371 6.013725 TGGGTTGAGCTCTTTATTAGTCAAGA 60.014 38.462 16.19 0.00 0.00 3.02
2911 11372 6.173339 TGGGTTGAGCTCTTTATTAGTCAAG 58.827 40.000 16.19 0.00 0.00 3.02
2913 11374 5.755409 TGGGTTGAGCTCTTTATTAGTCA 57.245 39.130 16.19 0.00 0.00 3.41
2977 11439 0.672401 TTAGCGGAAAAGCCACCTCG 60.672 55.000 0.00 0.00 38.01 4.63
2996 11458 1.914108 GGTAACCACCTTTAGGGAGCT 59.086 52.381 0.10 0.00 42.11 4.09
3060 11522 1.967066 CTTCGATCTAGGAGGCACCAT 59.033 52.381 3.18 0.00 42.04 3.55
3061 11523 1.342076 ACTTCGATCTAGGAGGCACCA 60.342 52.381 3.18 0.00 42.04 4.17
3129 11598 2.052104 GCCCACCTAAGCCGCATTT 61.052 57.895 0.00 0.00 0.00 2.32
3131 11600 4.856801 CGCCCACCTAAGCCGCAT 62.857 66.667 0.00 0.00 0.00 4.73
3135 11604 2.124695 CCTTCGCCCACCTAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
3169 11638 1.208535 TCGACAACACAGAACACCCTT 59.791 47.619 0.00 0.00 0.00 3.95
3204 11673 6.638096 TGAATTGTCACACTGATTTGTCAT 57.362 33.333 0.00 0.00 0.00 3.06
3230 11699 1.606313 AAGATTGCCCCCACCAACG 60.606 57.895 0.00 0.00 0.00 4.10
3233 11702 2.444696 CCAAGATTGCCCCCACCA 59.555 61.111 0.00 0.00 0.00 4.17
3260 11736 0.734889 CACATCCAACGCCTTGATCC 59.265 55.000 0.00 0.00 0.00 3.36
3269 11745 0.096976 GCCGACAATCACATCCAACG 59.903 55.000 0.00 0.00 0.00 4.10
3286 11762 2.125512 AGAGATGTCAACGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
3290 11766 1.585668 CATCGACAGAGATGTCAACGC 59.414 52.381 8.91 0.00 42.15 4.84
3296 11772 1.135915 GCCAGTCATCGACAGAGATGT 59.864 52.381 6.82 0.00 45.96 3.06
3298 11774 1.680735 GAGCCAGTCATCGACAGAGAT 59.319 52.381 0.00 0.00 34.60 2.75
3305 11781 2.153547 TTGCACGAGCCAGTCATCGA 62.154 55.000 1.39 0.00 41.40 3.59
3323 11799 1.757699 GAGAGGCTTCGAGGGTGTATT 59.242 52.381 0.00 0.00 0.00 1.89
3324 11800 1.063567 AGAGAGGCTTCGAGGGTGTAT 60.064 52.381 0.00 0.00 0.00 2.29
3375 11851 4.349503 ACCGCCTGATGCTGCCAA 62.350 61.111 0.00 0.00 38.05 4.52
3398 11874 1.743995 GTCAATTCCGACACCCCCG 60.744 63.158 0.00 0.00 35.88 5.73
3415 11891 1.349067 AGCGTTCCCCTTGTAAGAGT 58.651 50.000 0.00 0.00 0.00 3.24
3417 11893 4.141869 GGTATTAGCGTTCCCCTTGTAAGA 60.142 45.833 0.00 0.00 0.00 2.10
3422 11898 1.578583 CGGTATTAGCGTTCCCCTTG 58.421 55.000 7.11 0.00 33.95 3.61
3429 11905 3.181463 TGGAAATAGGCGGTATTAGCGTT 60.181 43.478 15.82 8.06 41.74 4.84
3475 11951 5.346822 CACAAACAAGGAATAGAGCATTTGC 59.653 40.000 0.00 0.00 42.49 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.