Multiple sequence alignment - TraesCS4A01G018100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G018100 chr4A 100.000 3533 0 0 1 3533 11814302 11810770 0.000000e+00 6525.0
1 TraesCS4A01G018100 chr4B 91.365 2096 92 33 621 2659 569628395 569630458 0.000000e+00 2785.0
2 TraesCS4A01G018100 chr4B 93.481 859 47 5 2678 3533 569630443 569631295 0.000000e+00 1267.0
3 TraesCS4A01G018100 chr4D 95.201 1021 40 4 1646 2659 455744840 455745858 0.000000e+00 1605.0
4 TraesCS4A01G018100 chr4D 94.389 998 46 3 637 1632 455743802 455744791 0.000000e+00 1524.0
5 TraesCS4A01G018100 chr4D 94.316 862 43 5 2675 3533 455745840 455746698 0.000000e+00 1315.0
6 TraesCS4A01G018100 chr6D 85.526 76 11 0 1106 1181 97914910 97914835 2.920000e-11 80.5
7 TraesCS4A01G018100 chr6B 85.526 76 11 0 1106 1181 182586235 182586160 2.920000e-11 80.5
8 TraesCS4A01G018100 chr6A 84.848 66 10 0 1111 1176 116920387 116920322 2.280000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G018100 chr4A 11810770 11814302 3532 True 6525.000000 6525 100.000000 1 3533 1 chr4A.!!$R1 3532
1 TraesCS4A01G018100 chr4B 569628395 569631295 2900 False 2026.000000 2785 92.423000 621 3533 2 chr4B.!!$F1 2912
2 TraesCS4A01G018100 chr4D 455743802 455746698 2896 False 1481.333333 1605 94.635333 637 3533 3 chr4D.!!$F1 2896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 581 0.103937 GGTCAAGATCTCCAGCCGAG 59.896 60.0 0.0 0.0 40.3 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2533 2600 0.108138 AGCCACGCTAAGCTACAAGG 60.108 55.0 0.0 0.0 36.99 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 8.974060 AAATAAGGAAAAGGGAAAAAGGAAAC 57.026 30.769 0.00 0.00 0.00 2.78
88 89 5.367945 AAGGAAAAGGGAAAAAGGAAACC 57.632 39.130 0.00 0.00 0.00 3.27
89 90 4.367166 AGGAAAAGGGAAAAAGGAAACCA 58.633 39.130 0.00 0.00 0.00 3.67
90 91 4.975147 AGGAAAAGGGAAAAAGGAAACCAT 59.025 37.500 0.00 0.00 0.00 3.55
91 92 6.147473 AGGAAAAGGGAAAAAGGAAACCATA 58.853 36.000 0.00 0.00 0.00 2.74
92 93 6.042781 AGGAAAAGGGAAAAAGGAAACCATAC 59.957 38.462 0.00 0.00 0.00 2.39
93 94 6.183361 GGAAAAGGGAAAAAGGAAACCATACA 60.183 38.462 0.00 0.00 0.00 2.29
94 95 6.816616 AAAGGGAAAAAGGAAACCATACAA 57.183 33.333 0.00 0.00 0.00 2.41
95 96 6.816616 AAGGGAAAAAGGAAACCATACAAA 57.183 33.333 0.00 0.00 0.00 2.83
96 97 6.816616 AGGGAAAAAGGAAACCATACAAAA 57.183 33.333 0.00 0.00 0.00 2.44
97 98 7.201702 AGGGAAAAAGGAAACCATACAAAAA 57.798 32.000 0.00 0.00 0.00 1.94
142 143 8.813643 TTTAAAAGACAAACAAAAACCGAAGA 57.186 26.923 0.00 0.00 0.00 2.87
143 144 8.813643 TTAAAAGACAAACAAAAACCGAAGAA 57.186 26.923 0.00 0.00 0.00 2.52
144 145 7.716768 AAAAGACAAACAAAAACCGAAGAAA 57.283 28.000 0.00 0.00 0.00 2.52
145 146 7.716768 AAAGACAAACAAAAACCGAAGAAAA 57.283 28.000 0.00 0.00 0.00 2.29
146 147 7.716768 AAGACAAACAAAAACCGAAGAAAAA 57.283 28.000 0.00 0.00 0.00 1.94
176 177 6.587273 TGGAAACATTTTAAAAGTTGAGGGG 58.413 36.000 6.79 0.00 33.40 4.79
177 178 5.468746 GGAAACATTTTAAAAGTTGAGGGGC 59.531 40.000 6.79 0.00 0.00 5.80
178 179 5.622346 AACATTTTAAAAGTTGAGGGGCA 57.378 34.783 6.79 0.00 0.00 5.36
179 180 5.823861 ACATTTTAAAAGTTGAGGGGCAT 57.176 34.783 6.79 0.00 0.00 4.40
180 181 5.550290 ACATTTTAAAAGTTGAGGGGCATG 58.450 37.500 6.79 0.00 0.00 4.06
181 182 5.306678 ACATTTTAAAAGTTGAGGGGCATGA 59.693 36.000 6.79 0.00 0.00 3.07
182 183 5.878406 TTTTAAAAGTTGAGGGGCATGAA 57.122 34.783 0.00 0.00 0.00 2.57
183 184 5.878406 TTTAAAAGTTGAGGGGCATGAAA 57.122 34.783 0.00 0.00 0.00 2.69
184 185 5.878406 TTAAAAGTTGAGGGGCATGAAAA 57.122 34.783 0.00 0.00 0.00 2.29
185 186 4.769345 AAAAGTTGAGGGGCATGAAAAA 57.231 36.364 0.00 0.00 0.00 1.94
186 187 4.980339 AAAGTTGAGGGGCATGAAAAAT 57.020 36.364 0.00 0.00 0.00 1.82
187 188 4.980339 AAGTTGAGGGGCATGAAAAATT 57.020 36.364 0.00 0.00 0.00 1.82
188 189 6.432403 AAAGTTGAGGGGCATGAAAAATTA 57.568 33.333 0.00 0.00 0.00 1.40
189 190 6.432403 AAGTTGAGGGGCATGAAAAATTAA 57.568 33.333 0.00 0.00 0.00 1.40
190 191 6.432403 AGTTGAGGGGCATGAAAAATTAAA 57.568 33.333 0.00 0.00 0.00 1.52
191 192 7.019656 AGTTGAGGGGCATGAAAAATTAAAT 57.980 32.000 0.00 0.00 0.00 1.40
192 193 8.144862 AGTTGAGGGGCATGAAAAATTAAATA 57.855 30.769 0.00 0.00 0.00 1.40
193 194 8.601546 AGTTGAGGGGCATGAAAAATTAAATAA 58.398 29.630 0.00 0.00 0.00 1.40
194 195 9.225436 GTTGAGGGGCATGAAAAATTAAATAAA 57.775 29.630 0.00 0.00 0.00 1.40
195 196 9.799106 TTGAGGGGCATGAAAAATTAAATAAAA 57.201 25.926 0.00 0.00 0.00 1.52
196 197 9.225436 TGAGGGGCATGAAAAATTAAATAAAAC 57.775 29.630 0.00 0.00 0.00 2.43
197 198 9.225436 GAGGGGCATGAAAAATTAAATAAAACA 57.775 29.630 0.00 0.00 0.00 2.83
198 199 9.008965 AGGGGCATGAAAAATTAAATAAAACAC 57.991 29.630 0.00 0.00 0.00 3.32
199 200 8.787852 GGGGCATGAAAAATTAAATAAAACACA 58.212 29.630 0.00 0.00 0.00 3.72
246 247 3.815856 TGAAAACCAATGAAAGCTGCA 57.184 38.095 1.02 0.00 0.00 4.41
247 248 4.134379 TGAAAACCAATGAAAGCTGCAA 57.866 36.364 1.02 0.00 0.00 4.08
248 249 4.511527 TGAAAACCAATGAAAGCTGCAAA 58.488 34.783 1.02 0.00 0.00 3.68
249 250 4.571580 TGAAAACCAATGAAAGCTGCAAAG 59.428 37.500 1.02 0.00 0.00 2.77
250 251 4.405116 AAACCAATGAAAGCTGCAAAGA 57.595 36.364 1.02 0.00 0.00 2.52
251 252 3.655276 ACCAATGAAAGCTGCAAAGAG 57.345 42.857 1.02 0.00 0.00 2.85
252 253 3.225104 ACCAATGAAAGCTGCAAAGAGA 58.775 40.909 1.02 0.00 0.00 3.10
253 254 3.638160 ACCAATGAAAGCTGCAAAGAGAA 59.362 39.130 1.02 0.00 0.00 2.87
254 255 4.099881 ACCAATGAAAGCTGCAAAGAGAAA 59.900 37.500 1.02 0.00 0.00 2.52
255 256 4.446719 CCAATGAAAGCTGCAAAGAGAAAC 59.553 41.667 1.02 0.00 0.00 2.78
256 257 4.924305 ATGAAAGCTGCAAAGAGAAACA 57.076 36.364 1.02 0.00 0.00 2.83
257 258 4.032703 TGAAAGCTGCAAAGAGAAACAC 57.967 40.909 1.02 0.00 0.00 3.32
258 259 3.443329 TGAAAGCTGCAAAGAGAAACACA 59.557 39.130 1.02 0.00 0.00 3.72
259 260 3.705043 AAGCTGCAAAGAGAAACACAG 57.295 42.857 1.02 0.00 0.00 3.66
260 261 2.923121 AGCTGCAAAGAGAAACACAGA 58.077 42.857 1.02 0.00 0.00 3.41
261 262 3.282021 AGCTGCAAAGAGAAACACAGAA 58.718 40.909 1.02 0.00 0.00 3.02
262 263 3.696051 AGCTGCAAAGAGAAACACAGAAA 59.304 39.130 1.02 0.00 0.00 2.52
263 264 4.158394 AGCTGCAAAGAGAAACACAGAAAA 59.842 37.500 1.02 0.00 0.00 2.29
264 265 4.864247 GCTGCAAAGAGAAACACAGAAAAA 59.136 37.500 0.00 0.00 0.00 1.94
265 266 5.005107 GCTGCAAAGAGAAACACAGAAAAAG 59.995 40.000 0.00 0.00 0.00 2.27
266 267 6.266168 TGCAAAGAGAAACACAGAAAAAGA 57.734 33.333 0.00 0.00 0.00 2.52
267 268 6.686630 TGCAAAGAGAAACACAGAAAAAGAA 58.313 32.000 0.00 0.00 0.00 2.52
268 269 7.151308 TGCAAAGAGAAACACAGAAAAAGAAA 58.849 30.769 0.00 0.00 0.00 2.52
269 270 7.655328 TGCAAAGAGAAACACAGAAAAAGAAAA 59.345 29.630 0.00 0.00 0.00 2.29
270 271 8.495148 GCAAAGAGAAACACAGAAAAAGAAAAA 58.505 29.630 0.00 0.00 0.00 1.94
343 344 8.812147 AAATCTATGGAAACGAAAAGAAAACC 57.188 30.769 0.00 0.00 0.00 3.27
344 345 6.945938 TCTATGGAAACGAAAAGAAAACCA 57.054 33.333 0.00 0.00 0.00 3.67
345 346 7.519032 TCTATGGAAACGAAAAGAAAACCAT 57.481 32.000 0.00 0.00 39.64 3.55
346 347 8.624367 TCTATGGAAACGAAAAGAAAACCATA 57.376 30.769 0.00 0.00 37.86 2.74
347 348 8.895932 CTATGGAAACGAAAAGAAAACCATAG 57.104 34.615 0.33 0.33 44.75 2.23
348 349 6.945938 TGGAAACGAAAAGAAAACCATAGA 57.054 33.333 0.00 0.00 0.00 1.98
349 350 7.336161 TGGAAACGAAAAGAAAACCATAGAA 57.664 32.000 0.00 0.00 0.00 2.10
350 351 7.773149 TGGAAACGAAAAGAAAACCATAGAAA 58.227 30.769 0.00 0.00 0.00 2.52
351 352 8.417884 TGGAAACGAAAAGAAAACCATAGAAAT 58.582 29.630 0.00 0.00 0.00 2.17
352 353 9.256477 GGAAACGAAAAGAAAACCATAGAAATT 57.744 29.630 0.00 0.00 0.00 1.82
354 355 9.594478 AAACGAAAAGAAAACCATAGAAATTGT 57.406 25.926 0.00 0.00 0.00 2.71
381 382 9.921637 AAAGAAACACATAAAAGAAAGAACACA 57.078 25.926 0.00 0.00 0.00 3.72
382 383 9.921637 AAGAAACACATAAAAGAAAGAACACAA 57.078 25.926 0.00 0.00 0.00 3.33
383 384 9.921637 AGAAACACATAAAAGAAAGAACACAAA 57.078 25.926 0.00 0.00 0.00 2.83
386 387 8.474006 ACACATAAAAGAAAGAACACAAAACC 57.526 30.769 0.00 0.00 0.00 3.27
387 388 8.311109 ACACATAAAAGAAAGAACACAAAACCT 58.689 29.630 0.00 0.00 0.00 3.50
388 389 8.594687 CACATAAAAGAAAGAACACAAAACCTG 58.405 33.333 0.00 0.00 0.00 4.00
389 390 8.527810 ACATAAAAGAAAGAACACAAAACCTGA 58.472 29.630 0.00 0.00 0.00 3.86
390 391 9.533253 CATAAAAGAAAGAACACAAAACCTGAT 57.467 29.630 0.00 0.00 0.00 2.90
393 394 9.936759 AAAAGAAAGAACACAAAACCTGATAAA 57.063 25.926 0.00 0.00 0.00 1.40
394 395 9.936759 AAAGAAAGAACACAAAACCTGATAAAA 57.063 25.926 0.00 0.00 0.00 1.52
395 396 9.936759 AAGAAAGAACACAAAACCTGATAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
437 438 5.847670 AAAGAGAAGAAAGACGAAATCCG 57.152 39.130 0.00 0.00 45.44 4.18
438 439 4.785511 AGAGAAGAAAGACGAAATCCGA 57.214 40.909 0.00 0.00 41.76 4.55
439 440 5.331876 AGAGAAGAAAGACGAAATCCGAT 57.668 39.130 0.00 0.00 41.76 4.18
440 441 5.105752 AGAGAAGAAAGACGAAATCCGATG 58.894 41.667 0.00 0.00 41.76 3.84
441 442 5.073311 AGAAGAAAGACGAAATCCGATGA 57.927 39.130 0.00 0.00 41.76 2.92
442 443 5.479306 AGAAGAAAGACGAAATCCGATGAA 58.521 37.500 0.00 0.00 41.76 2.57
443 444 5.932303 AGAAGAAAGACGAAATCCGATGAAA 59.068 36.000 0.00 0.00 41.76 2.69
444 445 6.426937 AGAAGAAAGACGAAATCCGATGAAAA 59.573 34.615 0.00 0.00 41.76 2.29
445 446 5.928153 AGAAAGACGAAATCCGATGAAAAC 58.072 37.500 0.00 0.00 41.76 2.43
446 447 4.680171 AAGACGAAATCCGATGAAAACC 57.320 40.909 0.00 0.00 41.76 3.27
447 448 2.671396 AGACGAAATCCGATGAAAACCG 59.329 45.455 0.00 0.00 41.76 4.44
448 449 1.735571 ACGAAATCCGATGAAAACCGG 59.264 47.619 0.00 0.00 46.57 5.28
454 455 3.226884 CGATGAAAACCGGACCAGT 57.773 52.632 9.46 0.00 0.00 4.00
455 456 1.076332 CGATGAAAACCGGACCAGTC 58.924 55.000 9.46 0.00 0.00 3.51
456 457 1.450025 GATGAAAACCGGACCAGTCC 58.550 55.000 9.46 6.77 46.18 3.85
466 467 2.633860 GACCAGTCCAAGCAACAGG 58.366 57.895 0.00 0.00 0.00 4.00
467 468 1.518903 GACCAGTCCAAGCAACAGGC 61.519 60.000 0.00 0.00 45.30 4.85
478 479 2.869233 GCAACAGGCAGAAACAAGAA 57.131 45.000 0.00 0.00 43.97 2.52
479 480 3.163630 GCAACAGGCAGAAACAAGAAA 57.836 42.857 0.00 0.00 43.97 2.52
480 481 3.520569 GCAACAGGCAGAAACAAGAAAA 58.479 40.909 0.00 0.00 43.97 2.29
481 482 3.932089 GCAACAGGCAGAAACAAGAAAAA 59.068 39.130 0.00 0.00 43.97 1.94
482 483 4.033243 GCAACAGGCAGAAACAAGAAAAAG 59.967 41.667 0.00 0.00 43.97 2.27
483 484 5.410067 CAACAGGCAGAAACAAGAAAAAGA 58.590 37.500 0.00 0.00 0.00 2.52
484 485 5.859205 ACAGGCAGAAACAAGAAAAAGAT 57.141 34.783 0.00 0.00 0.00 2.40
485 486 6.225981 ACAGGCAGAAACAAGAAAAAGATT 57.774 33.333 0.00 0.00 0.00 2.40
486 487 6.276091 ACAGGCAGAAACAAGAAAAAGATTC 58.724 36.000 0.00 0.00 0.00 2.52
487 488 5.693555 CAGGCAGAAACAAGAAAAAGATTCC 59.306 40.000 0.00 0.00 0.00 3.01
488 489 4.991056 GGCAGAAACAAGAAAAAGATTCCC 59.009 41.667 0.00 0.00 0.00 3.97
489 490 5.221521 GGCAGAAACAAGAAAAAGATTCCCT 60.222 40.000 0.00 0.00 0.00 4.20
490 491 5.923114 GCAGAAACAAGAAAAAGATTCCCTC 59.077 40.000 0.00 0.00 0.00 4.30
491 492 6.461509 GCAGAAACAAGAAAAAGATTCCCTCA 60.462 38.462 0.00 0.00 0.00 3.86
492 493 7.491682 CAGAAACAAGAAAAAGATTCCCTCAA 58.508 34.615 0.00 0.00 0.00 3.02
493 494 7.981225 CAGAAACAAGAAAAAGATTCCCTCAAA 59.019 33.333 0.00 0.00 0.00 2.69
494 495 8.539544 AGAAACAAGAAAAAGATTCCCTCAAAA 58.460 29.630 0.00 0.00 0.00 2.44
495 496 9.161629 GAAACAAGAAAAAGATTCCCTCAAAAA 57.838 29.630 0.00 0.00 0.00 1.94
517 518 7.716768 AAAAACAAGAAAAAGAACCAACGAA 57.283 28.000 0.00 0.00 0.00 3.85
518 519 7.716768 AAAACAAGAAAAAGAACCAACGAAA 57.283 28.000 0.00 0.00 0.00 3.46
519 520 6.699895 AACAAGAAAAAGAACCAACGAAAC 57.300 33.333 0.00 0.00 0.00 2.78
520 521 6.020971 ACAAGAAAAAGAACCAACGAAACT 57.979 33.333 0.00 0.00 0.00 2.66
521 522 6.090783 ACAAGAAAAAGAACCAACGAAACTC 58.909 36.000 0.00 0.00 0.00 3.01
522 523 6.072119 ACAAGAAAAAGAACCAACGAAACTCT 60.072 34.615 0.00 0.00 0.00 3.24
523 524 7.120138 ACAAGAAAAAGAACCAACGAAACTCTA 59.880 33.333 0.00 0.00 0.00 2.43
524 525 7.012959 AGAAAAAGAACCAACGAAACTCTAC 57.987 36.000 0.00 0.00 0.00 2.59
525 526 6.596497 AGAAAAAGAACCAACGAAACTCTACA 59.404 34.615 0.00 0.00 0.00 2.74
526 527 5.986004 AAAGAACCAACGAAACTCTACAG 57.014 39.130 0.00 0.00 0.00 2.74
527 528 3.391049 AGAACCAACGAAACTCTACAGC 58.609 45.455 0.00 0.00 0.00 4.40
528 529 1.779569 ACCAACGAAACTCTACAGCG 58.220 50.000 0.00 0.00 0.00 5.18
529 530 1.338973 ACCAACGAAACTCTACAGCGA 59.661 47.619 0.00 0.00 0.00 4.93
530 531 1.986378 CCAACGAAACTCTACAGCGAG 59.014 52.381 0.00 0.00 37.07 5.03
531 532 1.387084 CAACGAAACTCTACAGCGAGC 59.613 52.381 0.00 0.00 34.35 5.03
532 533 0.882474 ACGAAACTCTACAGCGAGCT 59.118 50.000 0.00 0.00 34.35 4.09
533 534 2.082231 ACGAAACTCTACAGCGAGCTA 58.918 47.619 0.00 0.00 34.35 3.32
534 535 2.096174 ACGAAACTCTACAGCGAGCTAG 59.904 50.000 0.00 0.00 34.35 3.42
535 536 2.456010 GAAACTCTACAGCGAGCTAGC 58.544 52.381 11.29 11.29 34.35 3.42
548 549 2.579514 GCTAGCTAGCGAACGAACC 58.420 57.895 28.89 1.73 39.82 3.62
549 550 0.179145 GCTAGCTAGCGAACGAACCA 60.179 55.000 28.89 0.00 39.82 3.67
550 551 1.734707 GCTAGCTAGCGAACGAACCAA 60.735 52.381 28.89 0.00 39.82 3.67
551 552 2.602878 CTAGCTAGCGAACGAACCAAA 58.397 47.619 8.05 0.00 0.00 3.28
552 553 1.873698 AGCTAGCGAACGAACCAAAA 58.126 45.000 9.55 0.00 0.00 2.44
553 554 2.215196 AGCTAGCGAACGAACCAAAAA 58.785 42.857 9.55 0.00 0.00 1.94
573 574 2.491675 AAAACCCGGTCAAGATCTCC 57.508 50.000 0.00 0.00 0.00 3.71
574 575 1.358152 AAACCCGGTCAAGATCTCCA 58.642 50.000 0.00 0.00 0.00 3.86
575 576 0.905357 AACCCGGTCAAGATCTCCAG 59.095 55.000 0.00 0.00 0.00 3.86
576 577 1.144936 CCCGGTCAAGATCTCCAGC 59.855 63.158 0.00 0.00 0.00 4.85
577 578 1.144936 CCGGTCAAGATCTCCAGCC 59.855 63.158 0.00 0.00 0.00 4.85
578 579 1.227089 CGGTCAAGATCTCCAGCCG 60.227 63.158 11.62 11.62 0.00 5.52
579 580 1.667154 CGGTCAAGATCTCCAGCCGA 61.667 60.000 17.52 0.00 40.04 5.54
580 581 0.103937 GGTCAAGATCTCCAGCCGAG 59.896 60.000 0.00 0.00 40.30 4.63
586 587 4.843624 TCTCCAGCCGAGACTTCA 57.156 55.556 0.00 0.00 42.97 3.02
587 588 2.268022 TCTCCAGCCGAGACTTCAC 58.732 57.895 0.00 0.00 42.97 3.18
588 589 0.251386 TCTCCAGCCGAGACTTCACT 60.251 55.000 0.00 0.00 42.97 3.41
589 590 0.605589 CTCCAGCCGAGACTTCACTT 59.394 55.000 0.00 0.00 41.63 3.16
590 591 1.819288 CTCCAGCCGAGACTTCACTTA 59.181 52.381 0.00 0.00 41.63 2.24
591 592 1.544691 TCCAGCCGAGACTTCACTTAC 59.455 52.381 0.00 0.00 0.00 2.34
592 593 1.618861 CAGCCGAGACTTCACTTACG 58.381 55.000 0.00 0.00 0.00 3.18
593 594 0.109226 AGCCGAGACTTCACTTACGC 60.109 55.000 0.00 0.00 0.00 4.42
594 595 0.109226 GCCGAGACTTCACTTACGCT 60.109 55.000 0.00 0.00 0.00 5.07
595 596 1.669211 GCCGAGACTTCACTTACGCTT 60.669 52.381 0.00 0.00 0.00 4.68
596 597 2.251893 CCGAGACTTCACTTACGCTTC 58.748 52.381 0.00 0.00 0.00 3.86
597 598 1.905687 CGAGACTTCACTTACGCTTCG 59.094 52.381 0.00 0.00 0.00 3.79
598 599 2.664971 CGAGACTTCACTTACGCTTCGT 60.665 50.000 0.00 0.00 44.35 3.85
599 600 2.909863 GAGACTTCACTTACGCTTCGTC 59.090 50.000 0.00 0.00 41.54 4.20
600 601 2.292569 AGACTTCACTTACGCTTCGTCA 59.707 45.455 0.00 0.00 41.54 4.35
601 602 3.057456 AGACTTCACTTACGCTTCGTCAT 60.057 43.478 0.00 0.00 41.54 3.06
602 603 2.987149 ACTTCACTTACGCTTCGTCATG 59.013 45.455 0.00 0.00 41.54 3.07
603 604 3.242518 CTTCACTTACGCTTCGTCATGA 58.757 45.455 0.00 0.00 41.54 3.07
604 605 2.863739 TCACTTACGCTTCGTCATGAG 58.136 47.619 0.00 0.00 41.54 2.90
605 606 1.321743 CACTTACGCTTCGTCATGAGC 59.678 52.381 0.00 0.00 41.54 4.26
611 612 1.840181 GCTTCGTCATGAGCGATACA 58.160 50.000 17.13 6.04 38.21 2.29
612 613 2.398498 GCTTCGTCATGAGCGATACAT 58.602 47.619 17.13 0.00 38.21 2.29
613 614 3.565516 GCTTCGTCATGAGCGATACATA 58.434 45.455 17.13 5.49 38.21 2.29
614 615 3.605916 GCTTCGTCATGAGCGATACATAG 59.394 47.826 17.13 13.13 38.21 2.23
615 616 4.613850 GCTTCGTCATGAGCGATACATAGA 60.614 45.833 17.13 4.42 38.21 1.98
616 617 5.432885 TTCGTCATGAGCGATACATAGAA 57.567 39.130 17.13 2.33 38.21 2.10
617 618 5.629079 TCGTCATGAGCGATACATAGAAT 57.371 39.130 13.87 0.00 33.09 2.40
618 619 6.737254 TCGTCATGAGCGATACATAGAATA 57.263 37.500 13.87 0.00 33.09 1.75
619 620 6.776094 TCGTCATGAGCGATACATAGAATAG 58.224 40.000 13.87 0.00 33.09 1.73
635 636 7.332926 ACATAGAATAGTTTGCAGTGAACTCAG 59.667 37.037 5.55 0.00 38.28 3.35
637 638 2.338577 AGTTTGCAGTGAACTCAGCT 57.661 45.000 0.00 0.00 32.04 4.24
642 643 1.860484 GCAGTGAACTCAGCTTGGGC 61.860 60.000 0.00 0.00 39.06 5.36
699 703 1.419922 GTGTGCGCCACGACATAAG 59.580 57.895 4.18 0.00 37.14 1.73
762 766 1.025812 CAGTTAACCACACCCGCAAA 58.974 50.000 0.88 0.00 0.00 3.68
763 767 1.026584 AGTTAACCACACCCGCAAAC 58.973 50.000 0.88 0.00 0.00 2.93
764 768 1.026584 GTTAACCACACCCGCAAACT 58.973 50.000 0.00 0.00 0.00 2.66
765 769 1.025812 TTAACCACACCCGCAAACTG 58.974 50.000 0.00 0.00 0.00 3.16
766 770 0.107116 TAACCACACCCGCAAACTGT 60.107 50.000 0.00 0.00 0.00 3.55
767 771 0.968393 AACCACACCCGCAAACTGTT 60.968 50.000 0.00 0.00 0.00 3.16
768 772 0.968393 ACCACACCCGCAAACTGTTT 60.968 50.000 0.00 0.00 0.00 2.83
769 773 1.025812 CCACACCCGCAAACTGTTTA 58.974 50.000 5.31 0.00 0.00 2.01
831 835 1.643292 CGCTACGGCATGAACCATG 59.357 57.895 0.00 2.77 43.91 3.66
909 913 4.624117 TCGTGCGGCGATCGATCC 62.624 66.667 21.57 10.69 45.68 3.36
923 930 0.386113 CGATCCCGTCTTCTTCCTCC 59.614 60.000 0.00 0.00 0.00 4.30
929 936 2.159028 CCCGTCTTCTTCCTCCTGATTC 60.159 54.545 0.00 0.00 0.00 2.52
943 950 0.809385 TGATTCTCGACCGAGGTGTC 59.191 55.000 17.92 13.52 42.20 3.67
1353 1378 1.766461 CGGGCCCTACATCTTCCCT 60.766 63.158 22.43 0.00 34.84 4.20
1360 1385 2.422093 CCCTACATCTTCCCTCAAAGGC 60.422 54.545 0.00 0.00 32.73 4.35
1415 1440 1.376424 ATGCGAGCTGAACTGGTGG 60.376 57.895 0.00 0.00 0.00 4.61
1423 1448 1.267806 GCTGAACTGGTGGTTGATGTG 59.732 52.381 0.00 0.00 38.41 3.21
1426 1451 1.608590 GAACTGGTGGTTGATGTGTGG 59.391 52.381 0.00 0.00 38.41 4.17
1431 1456 2.238521 GGTGGTTGATGTGTGGATTGT 58.761 47.619 0.00 0.00 0.00 2.71
1432 1457 2.030007 GGTGGTTGATGTGTGGATTGTG 60.030 50.000 0.00 0.00 0.00 3.33
1438 1463 2.553602 TGATGTGTGGATTGTGTTGAGC 59.446 45.455 0.00 0.00 0.00 4.26
1497 1522 4.208686 GAGGCGGCCGAGGTACAG 62.209 72.222 33.48 0.00 0.00 2.74
1632 1657 5.993441 TCATCTTCTCCACATACGACGTATA 59.007 40.000 19.53 4.27 0.00 1.47
1633 1658 6.653740 TCATCTTCTCCACATACGACGTATAT 59.346 38.462 19.53 6.57 0.00 0.86
1634 1659 7.820872 TCATCTTCTCCACATACGACGTATATA 59.179 37.037 19.53 5.59 0.00 0.86
1635 1660 8.613482 CATCTTCTCCACATACGACGTATATAT 58.387 37.037 19.53 6.49 0.00 0.86
1900 1967 0.603569 AATCAAGCGTCTGTCCGTCT 59.396 50.000 0.00 0.00 0.00 4.18
1957 2024 2.735663 CACTGATGAACTGAGCTGTGAC 59.264 50.000 0.00 0.00 34.23 3.67
1961 2028 3.561310 TGATGAACTGAGCTGTGACAAAC 59.439 43.478 0.00 0.00 0.00 2.93
2035 2102 1.681327 GAGGAGCTGTACCCGGTGA 60.681 63.158 0.00 0.00 0.00 4.02
2065 2132 2.281484 GCGGCAAGTTCCTGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
2076 2143 2.509336 CTGGTGATGTCCGTCGGC 60.509 66.667 6.34 2.31 0.00 5.54
2148 2215 1.897615 GGGCATCATCAGCTGGCTC 60.898 63.158 15.13 4.77 36.74 4.70
2190 2257 2.985957 TCATCGACATCTTCATGGCA 57.014 45.000 0.00 0.00 38.04 4.92
2489 2556 0.681564 GAGAGGAGGACAAGGCTCGA 60.682 60.000 0.00 0.00 0.00 4.04
2533 2600 2.370281 TCTGAAATCCAGACGCTGAC 57.630 50.000 8.20 0.00 46.38 3.51
2546 2613 1.281899 CGCTGACCTTGTAGCTTAGC 58.718 55.000 0.00 0.00 37.78 3.09
2594 2668 8.607713 TCTATATAAATTTTTGGCGGGGATAGA 58.392 33.333 0.00 0.00 0.00 1.98
2607 2681 4.262678 GCGGGGATAGATAGAGAAAGCTTT 60.263 45.833 12.53 12.53 0.00 3.51
2608 2682 5.743422 GCGGGGATAGATAGAGAAAGCTTTT 60.743 44.000 14.05 3.35 0.00 2.27
2633 2707 8.771521 TCACATGGATAATGAAAGGAAATGAT 57.228 30.769 0.00 0.00 38.72 2.45
2637 2711 7.281040 TGGATAATGAAAGGAAATGATGAGC 57.719 36.000 0.00 0.00 0.00 4.26
2640 2714 7.230108 GGATAATGAAAGGAAATGATGAGCTCA 59.770 37.037 20.79 20.79 38.53 4.26
2641 2715 6.845758 AATGAAAGGAAATGATGAGCTCAA 57.154 33.333 22.50 5.35 37.44 3.02
2642 2716 5.892160 TGAAAGGAAATGATGAGCTCAAG 57.108 39.130 22.50 0.00 37.44 3.02
2643 2717 5.563592 TGAAAGGAAATGATGAGCTCAAGA 58.436 37.500 22.50 10.64 37.44 3.02
2644 2718 6.005823 TGAAAGGAAATGATGAGCTCAAGAA 58.994 36.000 22.50 9.69 37.44 2.52
2645 2719 6.491062 TGAAAGGAAATGATGAGCTCAAGAAA 59.509 34.615 22.50 6.98 37.44 2.52
2646 2720 6.906157 AAGGAAATGATGAGCTCAAGAAAA 57.094 33.333 22.50 5.07 37.44 2.29
2647 2721 6.906157 AGGAAATGATGAGCTCAAGAAAAA 57.094 33.333 22.50 3.20 37.44 1.94
2648 2722 7.477945 AGGAAATGATGAGCTCAAGAAAAAT 57.522 32.000 22.50 1.08 37.44 1.82
2649 2723 8.585471 AGGAAATGATGAGCTCAAGAAAAATA 57.415 30.769 22.50 1.48 37.44 1.40
2650 2724 9.028284 AGGAAATGATGAGCTCAAGAAAAATAA 57.972 29.630 22.50 0.00 37.44 1.40
2651 2725 9.080915 GGAAATGATGAGCTCAAGAAAAATAAC 57.919 33.333 22.50 5.64 37.44 1.89
2652 2726 9.630098 GAAATGATGAGCTCAAGAAAAATAACA 57.370 29.630 22.50 8.38 37.44 2.41
2653 2727 9.985730 AAATGATGAGCTCAAGAAAAATAACAA 57.014 25.926 22.50 0.00 37.44 2.83
2654 2728 8.976986 ATGATGAGCTCAAGAAAAATAACAAC 57.023 30.769 22.50 0.00 37.44 3.32
2655 2729 7.939782 TGATGAGCTCAAGAAAAATAACAACA 58.060 30.769 22.50 0.00 0.00 3.33
2656 2730 7.862372 TGATGAGCTCAAGAAAAATAACAACAC 59.138 33.333 22.50 0.00 0.00 3.32
2657 2731 7.333528 TGAGCTCAAGAAAAATAACAACACT 57.666 32.000 15.67 0.00 0.00 3.55
2658 2732 7.771183 TGAGCTCAAGAAAAATAACAACACTT 58.229 30.769 15.67 0.00 0.00 3.16
2659 2733 8.250332 TGAGCTCAAGAAAAATAACAACACTTT 58.750 29.630 15.67 0.00 0.00 2.66
2660 2734 9.087424 GAGCTCAAGAAAAATAACAACACTTTT 57.913 29.630 9.40 0.00 0.00 2.27
2661 2735 9.435688 AGCTCAAGAAAAATAACAACACTTTTT 57.564 25.926 0.00 0.00 35.42 1.94
2708 2782 5.754890 ACAAGACTTGATGAAACCAAAATGC 59.245 36.000 21.95 0.00 0.00 3.56
2725 2799 0.770499 TGCCTCTCAATTGGTCACCA 59.230 50.000 5.42 0.00 0.00 4.17
2745 2819 5.305128 CACCATGGCAATTGTATATCCCTTT 59.695 40.000 13.04 0.00 0.00 3.11
2749 2823 4.819630 TGGCAATTGTATATCCCTTTCGAC 59.180 41.667 7.40 0.00 0.00 4.20
2758 2832 7.323420 TGTATATCCCTTTCGACATCATCATC 58.677 38.462 0.00 0.00 0.00 2.92
2760 2834 4.694760 TCCCTTTCGACATCATCATCAT 57.305 40.909 0.00 0.00 0.00 2.45
2761 2835 4.383173 TCCCTTTCGACATCATCATCATG 58.617 43.478 0.00 0.00 0.00 3.07
2762 2836 4.101430 TCCCTTTCGACATCATCATCATGA 59.899 41.667 0.00 0.00 43.45 3.07
2763 2837 4.818005 CCCTTTCGACATCATCATCATGAA 59.182 41.667 0.00 0.00 42.53 2.57
2764 2838 5.472478 CCCTTTCGACATCATCATCATGAAT 59.528 40.000 0.00 0.00 42.53 2.57
2765 2839 6.652062 CCCTTTCGACATCATCATCATGAATA 59.348 38.462 0.00 0.00 42.53 1.75
2782 2856 9.850628 ATCATGAATAAATCAACAGTGAACAAG 57.149 29.630 0.00 0.00 42.54 3.16
2785 2859 8.675705 TGAATAAATCAACAGTGAACAAGAGA 57.324 30.769 0.00 0.00 37.30 3.10
2821 2895 7.354751 ACAAAAATTTACACAAAGCCTCCTA 57.645 32.000 0.00 0.00 0.00 2.94
2829 2903 4.844884 ACACAAAGCCTCCTACCTATTTC 58.155 43.478 0.00 0.00 0.00 2.17
2885 2961 8.137437 CAGCATAGAAAGAAAAGAAAAACCTGA 58.863 33.333 0.00 0.00 0.00 3.86
2918 2994 2.762535 ACACTGGGAACATCGGTTAG 57.237 50.000 0.00 0.00 41.51 2.34
2968 3045 0.936764 CTTCAGTCCGCGGATCATCG 60.937 60.000 33.58 17.55 0.00 3.84
3186 3263 6.659242 GGACAGAAGATGTAAAATTCTCCCAA 59.341 38.462 0.00 0.00 44.17 4.12
3234 3311 8.120140 AGTCTATAAGTTCAACTAGTTTCCGT 57.880 34.615 5.07 0.00 0.00 4.69
3480 3557 3.620488 AGTTTCGCCATGTTACCATCAT 58.380 40.909 0.00 0.00 0.00 2.45
3482 3559 4.816385 AGTTTCGCCATGTTACCATCATAG 59.184 41.667 0.00 0.00 0.00 2.23
3494 3571 6.099269 TGTTACCATCATAGGTAGGAAGGAAC 59.901 42.308 0.25 2.22 44.48 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.996644 GGTTTCCTTTTTCCCTTTTCCTTATTT 59.003 33.333 0.00 0.00 0.00 1.40
63 64 7.128109 TGGTTTCCTTTTTCCCTTTTCCTTATT 59.872 33.333 0.00 0.00 0.00 1.40
64 65 6.617784 TGGTTTCCTTTTTCCCTTTTCCTTAT 59.382 34.615 0.00 0.00 0.00 1.73
65 66 5.965091 TGGTTTCCTTTTTCCCTTTTCCTTA 59.035 36.000 0.00 0.00 0.00 2.69
66 67 4.785914 TGGTTTCCTTTTTCCCTTTTCCTT 59.214 37.500 0.00 0.00 0.00 3.36
67 68 4.367166 TGGTTTCCTTTTTCCCTTTTCCT 58.633 39.130 0.00 0.00 0.00 3.36
68 69 4.764050 TGGTTTCCTTTTTCCCTTTTCC 57.236 40.909 0.00 0.00 0.00 3.13
69 70 6.822442 TGTATGGTTTCCTTTTTCCCTTTTC 58.178 36.000 0.00 0.00 0.00 2.29
70 71 6.816616 TGTATGGTTTCCTTTTTCCCTTTT 57.183 33.333 0.00 0.00 0.00 2.27
71 72 6.816616 TTGTATGGTTTCCTTTTTCCCTTT 57.183 33.333 0.00 0.00 0.00 3.11
72 73 6.816616 TTTGTATGGTTTCCTTTTTCCCTT 57.183 33.333 0.00 0.00 0.00 3.95
73 74 6.816616 TTTTGTATGGTTTCCTTTTTCCCT 57.183 33.333 0.00 0.00 0.00 4.20
116 117 9.425577 TCTTCGGTTTTTGTTTGTCTTTTAAAT 57.574 25.926 0.00 0.00 0.00 1.40
117 118 8.813643 TCTTCGGTTTTTGTTTGTCTTTTAAA 57.186 26.923 0.00 0.00 0.00 1.52
118 119 8.813643 TTCTTCGGTTTTTGTTTGTCTTTTAA 57.186 26.923 0.00 0.00 0.00 1.52
119 120 8.813643 TTTCTTCGGTTTTTGTTTGTCTTTTA 57.186 26.923 0.00 0.00 0.00 1.52
120 121 7.716768 TTTCTTCGGTTTTTGTTTGTCTTTT 57.283 28.000 0.00 0.00 0.00 2.27
121 122 7.716768 TTTTCTTCGGTTTTTGTTTGTCTTT 57.283 28.000 0.00 0.00 0.00 2.52
122 123 7.716768 TTTTTCTTCGGTTTTTGTTTGTCTT 57.283 28.000 0.00 0.00 0.00 3.01
146 147 9.757227 TCAACTTTTAAAATGTTTCCATCGATT 57.243 25.926 0.09 0.00 0.00 3.34
147 148 9.410556 CTCAACTTTTAAAATGTTTCCATCGAT 57.589 29.630 0.09 0.00 0.00 3.59
148 149 7.865385 CCTCAACTTTTAAAATGTTTCCATCGA 59.135 33.333 0.09 0.00 0.00 3.59
149 150 7.116233 CCCTCAACTTTTAAAATGTTTCCATCG 59.884 37.037 0.09 0.00 0.00 3.84
150 151 7.387673 CCCCTCAACTTTTAAAATGTTTCCATC 59.612 37.037 0.09 0.00 0.00 3.51
151 152 7.223584 CCCCTCAACTTTTAAAATGTTTCCAT 58.776 34.615 0.09 0.00 0.00 3.41
152 153 6.587273 CCCCTCAACTTTTAAAATGTTTCCA 58.413 36.000 0.09 0.00 0.00 3.53
153 154 5.468746 GCCCCTCAACTTTTAAAATGTTTCC 59.531 40.000 0.09 0.00 0.00 3.13
154 155 6.052360 TGCCCCTCAACTTTTAAAATGTTTC 58.948 36.000 0.09 0.00 0.00 2.78
155 156 5.995446 TGCCCCTCAACTTTTAAAATGTTT 58.005 33.333 0.09 0.00 0.00 2.83
156 157 5.622346 TGCCCCTCAACTTTTAAAATGTT 57.378 34.783 0.09 5.67 0.00 2.71
157 158 5.306678 TCATGCCCCTCAACTTTTAAAATGT 59.693 36.000 0.09 0.00 0.00 2.71
158 159 5.792741 TCATGCCCCTCAACTTTTAAAATG 58.207 37.500 0.09 0.00 0.00 2.32
159 160 6.432403 TTCATGCCCCTCAACTTTTAAAAT 57.568 33.333 0.09 0.00 0.00 1.82
160 161 5.878406 TTCATGCCCCTCAACTTTTAAAA 57.122 34.783 0.00 0.00 0.00 1.52
161 162 5.878406 TTTCATGCCCCTCAACTTTTAAA 57.122 34.783 0.00 0.00 0.00 1.52
162 163 5.878406 TTTTCATGCCCCTCAACTTTTAA 57.122 34.783 0.00 0.00 0.00 1.52
163 164 5.878406 TTTTTCATGCCCCTCAACTTTTA 57.122 34.783 0.00 0.00 0.00 1.52
164 165 4.769345 TTTTTCATGCCCCTCAACTTTT 57.231 36.364 0.00 0.00 0.00 2.27
165 166 4.980339 ATTTTTCATGCCCCTCAACTTT 57.020 36.364 0.00 0.00 0.00 2.66
166 167 4.980339 AATTTTTCATGCCCCTCAACTT 57.020 36.364 0.00 0.00 0.00 2.66
167 168 6.432403 TTTAATTTTTCATGCCCCTCAACT 57.568 33.333 0.00 0.00 0.00 3.16
168 169 8.785329 TTATTTAATTTTTCATGCCCCTCAAC 57.215 30.769 0.00 0.00 0.00 3.18
169 170 9.799106 TTTTATTTAATTTTTCATGCCCCTCAA 57.201 25.926 0.00 0.00 0.00 3.02
170 171 9.225436 GTTTTATTTAATTTTTCATGCCCCTCA 57.775 29.630 0.00 0.00 0.00 3.86
171 172 9.225436 TGTTTTATTTAATTTTTCATGCCCCTC 57.775 29.630 0.00 0.00 0.00 4.30
172 173 9.008965 GTGTTTTATTTAATTTTTCATGCCCCT 57.991 29.630 0.00 0.00 0.00 4.79
173 174 8.787852 TGTGTTTTATTTAATTTTTCATGCCCC 58.212 29.630 0.00 0.00 0.00 5.80
224 225 4.706035 TGCAGCTTTCATTGGTTTTCAAT 58.294 34.783 0.00 0.00 46.24 2.57
225 226 4.134379 TGCAGCTTTCATTGGTTTTCAA 57.866 36.364 0.00 0.00 40.01 2.69
226 227 3.815856 TGCAGCTTTCATTGGTTTTCA 57.184 38.095 0.00 0.00 0.00 2.69
227 228 4.810491 TCTTTGCAGCTTTCATTGGTTTTC 59.190 37.500 0.00 0.00 0.00 2.29
228 229 4.768583 TCTTTGCAGCTTTCATTGGTTTT 58.231 34.783 0.00 0.00 0.00 2.43
229 230 4.099881 TCTCTTTGCAGCTTTCATTGGTTT 59.900 37.500 0.00 0.00 0.00 3.27
230 231 3.638160 TCTCTTTGCAGCTTTCATTGGTT 59.362 39.130 0.00 0.00 0.00 3.67
231 232 3.225104 TCTCTTTGCAGCTTTCATTGGT 58.775 40.909 0.00 0.00 0.00 3.67
232 233 3.928727 TCTCTTTGCAGCTTTCATTGG 57.071 42.857 0.00 0.00 0.00 3.16
233 234 5.045215 TGTTTCTCTTTGCAGCTTTCATTG 58.955 37.500 0.00 0.00 0.00 2.82
234 235 5.045872 GTGTTTCTCTTTGCAGCTTTCATT 58.954 37.500 0.00 0.00 0.00 2.57
235 236 4.098349 TGTGTTTCTCTTTGCAGCTTTCAT 59.902 37.500 0.00 0.00 0.00 2.57
236 237 3.443329 TGTGTTTCTCTTTGCAGCTTTCA 59.557 39.130 0.00 0.00 0.00 2.69
237 238 4.032703 TGTGTTTCTCTTTGCAGCTTTC 57.967 40.909 0.00 0.00 0.00 2.62
238 239 3.696051 TCTGTGTTTCTCTTTGCAGCTTT 59.304 39.130 0.00 0.00 0.00 3.51
239 240 3.282021 TCTGTGTTTCTCTTTGCAGCTT 58.718 40.909 0.00 0.00 0.00 3.74
240 241 2.923121 TCTGTGTTTCTCTTTGCAGCT 58.077 42.857 0.00 0.00 0.00 4.24
241 242 3.698029 TTCTGTGTTTCTCTTTGCAGC 57.302 42.857 0.00 0.00 0.00 5.25
242 243 6.324819 TCTTTTTCTGTGTTTCTCTTTGCAG 58.675 36.000 0.00 0.00 0.00 4.41
243 244 6.266168 TCTTTTTCTGTGTTTCTCTTTGCA 57.734 33.333 0.00 0.00 0.00 4.08
244 245 7.581011 TTTCTTTTTCTGTGTTTCTCTTTGC 57.419 32.000 0.00 0.00 0.00 3.68
317 318 9.256477 GGTTTTCTTTTCGTTTCCATAGATTTT 57.744 29.630 0.00 0.00 0.00 1.82
318 319 8.417884 TGGTTTTCTTTTCGTTTCCATAGATTT 58.582 29.630 0.00 0.00 0.00 2.17
319 320 7.947282 TGGTTTTCTTTTCGTTTCCATAGATT 58.053 30.769 0.00 0.00 0.00 2.40
320 321 7.519032 TGGTTTTCTTTTCGTTTCCATAGAT 57.481 32.000 0.00 0.00 0.00 1.98
321 322 6.945938 TGGTTTTCTTTTCGTTTCCATAGA 57.054 33.333 0.00 0.00 0.00 1.98
322 323 8.726988 TCTATGGTTTTCTTTTCGTTTCCATAG 58.273 33.333 16.84 16.84 46.97 2.23
323 324 8.624367 TCTATGGTTTTCTTTTCGTTTCCATA 57.376 30.769 0.00 0.00 36.17 2.74
324 325 7.519032 TCTATGGTTTTCTTTTCGTTTCCAT 57.481 32.000 0.00 0.00 37.96 3.41
325 326 6.945938 TCTATGGTTTTCTTTTCGTTTCCA 57.054 33.333 0.00 0.00 0.00 3.53
326 327 8.812147 ATTTCTATGGTTTTCTTTTCGTTTCC 57.188 30.769 0.00 0.00 0.00 3.13
328 329 9.594478 ACAATTTCTATGGTTTTCTTTTCGTTT 57.406 25.926 0.00 0.00 0.00 3.60
355 356 9.921637 TGTGTTCTTTCTTTTATGTGTTTCTTT 57.078 25.926 0.00 0.00 0.00 2.52
356 357 9.921637 TTGTGTTCTTTCTTTTATGTGTTTCTT 57.078 25.926 0.00 0.00 0.00 2.52
357 358 9.921637 TTTGTGTTCTTTCTTTTATGTGTTTCT 57.078 25.926 0.00 0.00 0.00 2.52
360 361 8.931775 GGTTTTGTGTTCTTTCTTTTATGTGTT 58.068 29.630 0.00 0.00 0.00 3.32
361 362 8.311109 AGGTTTTGTGTTCTTTCTTTTATGTGT 58.689 29.630 0.00 0.00 0.00 3.72
362 363 8.594687 CAGGTTTTGTGTTCTTTCTTTTATGTG 58.405 33.333 0.00 0.00 0.00 3.21
363 364 8.527810 TCAGGTTTTGTGTTCTTTCTTTTATGT 58.472 29.630 0.00 0.00 0.00 2.29
364 365 8.925161 TCAGGTTTTGTGTTCTTTCTTTTATG 57.075 30.769 0.00 0.00 0.00 1.90
367 368 9.936759 TTTATCAGGTTTTGTGTTCTTTCTTTT 57.063 25.926 0.00 0.00 0.00 2.27
368 369 9.936759 TTTTATCAGGTTTTGTGTTCTTTCTTT 57.063 25.926 0.00 0.00 0.00 2.52
369 370 9.936759 TTTTTATCAGGTTTTGTGTTCTTTCTT 57.063 25.926 0.00 0.00 0.00 2.52
413 414 6.482308 TCGGATTTCGTCTTTCTTCTCTTTTT 59.518 34.615 0.00 0.00 40.32 1.94
414 415 5.989777 TCGGATTTCGTCTTTCTTCTCTTTT 59.010 36.000 0.00 0.00 40.32 2.27
415 416 5.539048 TCGGATTTCGTCTTTCTTCTCTTT 58.461 37.500 0.00 0.00 40.32 2.52
416 417 5.135508 TCGGATTTCGTCTTTCTTCTCTT 57.864 39.130 0.00 0.00 40.32 2.85
417 418 4.785511 TCGGATTTCGTCTTTCTTCTCT 57.214 40.909 0.00 0.00 40.32 3.10
418 419 5.103000 TCATCGGATTTCGTCTTTCTTCTC 58.897 41.667 0.00 0.00 40.32 2.87
419 420 5.073311 TCATCGGATTTCGTCTTTCTTCT 57.927 39.130 0.00 0.00 40.32 2.85
420 421 5.779806 TTCATCGGATTTCGTCTTTCTTC 57.220 39.130 0.00 0.00 40.32 2.87
421 422 6.371389 GTTTTCATCGGATTTCGTCTTTCTT 58.629 36.000 0.00 0.00 40.32 2.52
422 423 5.106673 GGTTTTCATCGGATTTCGTCTTTCT 60.107 40.000 0.00 0.00 40.32 2.52
423 424 5.086727 GGTTTTCATCGGATTTCGTCTTTC 58.913 41.667 0.00 0.00 40.32 2.62
424 425 4.378046 CGGTTTTCATCGGATTTCGTCTTT 60.378 41.667 0.00 0.00 40.32 2.52
425 426 3.124636 CGGTTTTCATCGGATTTCGTCTT 59.875 43.478 0.00 0.00 40.32 3.01
426 427 2.671396 CGGTTTTCATCGGATTTCGTCT 59.329 45.455 0.00 0.00 40.32 4.18
427 428 3.034406 CGGTTTTCATCGGATTTCGTC 57.966 47.619 0.00 0.00 40.32 4.20
435 436 0.321298 ACTGGTCCGGTTTTCATCGG 60.321 55.000 0.00 0.00 46.89 4.18
436 437 1.076332 GACTGGTCCGGTTTTCATCG 58.924 55.000 4.40 0.00 0.00 3.84
437 438 1.450025 GGACTGGTCCGGTTTTCATC 58.550 55.000 4.40 0.00 40.36 2.92
438 439 3.644861 GGACTGGTCCGGTTTTCAT 57.355 52.632 4.40 0.00 40.36 2.57
448 449 1.518903 GCCTGTTGCTTGGACTGGTC 61.519 60.000 0.00 0.00 38.11 4.02
449 450 1.529244 GCCTGTTGCTTGGACTGGT 60.529 57.895 0.00 0.00 38.11 4.00
450 451 1.521450 CTGCCTGTTGCTTGGACTGG 61.521 60.000 0.00 0.00 42.00 4.00
451 452 0.535780 TCTGCCTGTTGCTTGGACTG 60.536 55.000 0.00 0.00 42.00 3.51
452 453 0.183492 TTCTGCCTGTTGCTTGGACT 59.817 50.000 0.00 0.00 42.00 3.85
453 454 1.032014 TTTCTGCCTGTTGCTTGGAC 58.968 50.000 0.00 0.00 42.00 4.02
454 455 1.032014 GTTTCTGCCTGTTGCTTGGA 58.968 50.000 0.00 0.00 42.00 3.53
455 456 0.746063 TGTTTCTGCCTGTTGCTTGG 59.254 50.000 0.00 0.00 42.00 3.61
456 457 2.099592 TCTTGTTTCTGCCTGTTGCTTG 59.900 45.455 0.00 0.00 42.00 4.01
457 458 2.378038 TCTTGTTTCTGCCTGTTGCTT 58.622 42.857 0.00 0.00 42.00 3.91
458 459 2.057137 TCTTGTTTCTGCCTGTTGCT 57.943 45.000 0.00 0.00 42.00 3.91
459 460 2.869233 TTCTTGTTTCTGCCTGTTGC 57.131 45.000 0.00 0.00 41.77 4.17
460 461 5.410067 TCTTTTTCTTGTTTCTGCCTGTTG 58.590 37.500 0.00 0.00 0.00 3.33
461 462 5.659440 TCTTTTTCTTGTTTCTGCCTGTT 57.341 34.783 0.00 0.00 0.00 3.16
462 463 5.859205 ATCTTTTTCTTGTTTCTGCCTGT 57.141 34.783 0.00 0.00 0.00 4.00
463 464 5.693555 GGAATCTTTTTCTTGTTTCTGCCTG 59.306 40.000 0.00 0.00 0.00 4.85
464 465 5.221521 GGGAATCTTTTTCTTGTTTCTGCCT 60.222 40.000 0.00 0.00 0.00 4.75
465 466 4.991056 GGGAATCTTTTTCTTGTTTCTGCC 59.009 41.667 0.00 0.00 0.00 4.85
466 467 5.847304 AGGGAATCTTTTTCTTGTTTCTGC 58.153 37.500 0.00 0.00 0.00 4.26
467 468 7.042797 TGAGGGAATCTTTTTCTTGTTTCTG 57.957 36.000 0.00 0.00 0.00 3.02
468 469 7.660030 TTGAGGGAATCTTTTTCTTGTTTCT 57.340 32.000 0.00 0.00 0.00 2.52
469 470 8.716646 TTTTGAGGGAATCTTTTTCTTGTTTC 57.283 30.769 0.00 0.00 0.00 2.78
493 494 7.716768 TTCGTTGGTTCTTTTTCTTGTTTTT 57.283 28.000 0.00 0.00 0.00 1.94
494 495 7.439955 AGTTTCGTTGGTTCTTTTTCTTGTTTT 59.560 29.630 0.00 0.00 0.00 2.43
495 496 6.926826 AGTTTCGTTGGTTCTTTTTCTTGTTT 59.073 30.769 0.00 0.00 0.00 2.83
496 497 6.452242 AGTTTCGTTGGTTCTTTTTCTTGTT 58.548 32.000 0.00 0.00 0.00 2.83
497 498 6.020971 AGTTTCGTTGGTTCTTTTTCTTGT 57.979 33.333 0.00 0.00 0.00 3.16
498 499 6.322491 AGAGTTTCGTTGGTTCTTTTTCTTG 58.678 36.000 0.00 0.00 0.00 3.02
499 500 6.510879 AGAGTTTCGTTGGTTCTTTTTCTT 57.489 33.333 0.00 0.00 0.00 2.52
500 501 6.596497 TGTAGAGTTTCGTTGGTTCTTTTTCT 59.404 34.615 0.00 0.00 0.00 2.52
501 502 6.778108 TGTAGAGTTTCGTTGGTTCTTTTTC 58.222 36.000 0.00 0.00 0.00 2.29
502 503 6.677187 GCTGTAGAGTTTCGTTGGTTCTTTTT 60.677 38.462 0.00 0.00 0.00 1.94
503 504 5.220796 GCTGTAGAGTTTCGTTGGTTCTTTT 60.221 40.000 0.00 0.00 0.00 2.27
504 505 4.272748 GCTGTAGAGTTTCGTTGGTTCTTT 59.727 41.667 0.00 0.00 0.00 2.52
505 506 3.808174 GCTGTAGAGTTTCGTTGGTTCTT 59.192 43.478 0.00 0.00 0.00 2.52
506 507 3.391049 GCTGTAGAGTTTCGTTGGTTCT 58.609 45.455 0.00 0.00 0.00 3.01
507 508 2.155155 CGCTGTAGAGTTTCGTTGGTTC 59.845 50.000 0.00 0.00 0.00 3.62
508 509 2.132762 CGCTGTAGAGTTTCGTTGGTT 58.867 47.619 0.00 0.00 0.00 3.67
509 510 1.338973 TCGCTGTAGAGTTTCGTTGGT 59.661 47.619 0.00 0.00 0.00 3.67
510 511 1.986378 CTCGCTGTAGAGTTTCGTTGG 59.014 52.381 0.00 0.00 33.75 3.77
511 512 1.387084 GCTCGCTGTAGAGTTTCGTTG 59.613 52.381 4.70 0.00 40.26 4.10
512 513 1.269998 AGCTCGCTGTAGAGTTTCGTT 59.730 47.619 0.00 0.00 40.26 3.85
513 514 0.882474 AGCTCGCTGTAGAGTTTCGT 59.118 50.000 0.00 0.00 40.26 3.85
514 515 2.710760 CTAGCTCGCTGTAGAGTTTCG 58.289 52.381 0.85 0.00 40.26 3.46
515 516 2.098443 AGCTAGCTCGCTGTAGAGTTTC 59.902 50.000 12.68 0.00 39.16 2.78
516 517 2.096248 AGCTAGCTCGCTGTAGAGTTT 58.904 47.619 12.68 0.00 39.16 2.66
517 518 1.757682 AGCTAGCTCGCTGTAGAGTT 58.242 50.000 12.68 0.00 39.16 3.01
518 519 2.489971 CTAGCTAGCTCGCTGTAGAGT 58.510 52.381 23.26 0.00 41.12 3.24
519 520 1.196808 GCTAGCTAGCTCGCTGTAGAG 59.803 57.143 33.71 16.36 45.62 2.43
520 521 1.231221 GCTAGCTAGCTCGCTGTAGA 58.769 55.000 33.71 6.69 45.62 2.59
521 522 0.110419 CGCTAGCTAGCTCGCTGTAG 60.110 60.000 36.02 19.54 46.85 2.74
522 523 0.532196 TCGCTAGCTAGCTCGCTGTA 60.532 55.000 36.02 17.95 46.85 2.74
523 524 1.377366 TTCGCTAGCTAGCTCGCTGT 61.377 55.000 36.02 8.27 46.85 4.40
524 525 0.932585 GTTCGCTAGCTAGCTCGCTG 60.933 60.000 36.02 25.00 46.85 5.18
525 526 1.357334 GTTCGCTAGCTAGCTCGCT 59.643 57.895 36.02 17.70 46.85 4.93
526 527 2.006587 CGTTCGCTAGCTAGCTCGC 61.007 63.158 36.02 26.83 46.85 5.03
527 528 0.027716 TTCGTTCGCTAGCTAGCTCG 59.972 55.000 36.02 32.71 46.85 5.03
528 529 1.468895 GTTCGTTCGCTAGCTAGCTC 58.531 55.000 36.02 25.54 46.85 4.09
529 530 0.100861 GGTTCGTTCGCTAGCTAGCT 59.899 55.000 36.02 23.12 46.85 3.32
530 531 0.179145 TGGTTCGTTCGCTAGCTAGC 60.179 55.000 31.88 31.88 45.62 3.42
531 532 2.273370 TTGGTTCGTTCGCTAGCTAG 57.727 50.000 16.84 16.84 0.00 3.42
532 533 2.728690 TTTGGTTCGTTCGCTAGCTA 57.271 45.000 13.93 0.00 0.00 3.32
533 534 1.873698 TTTTGGTTCGTTCGCTAGCT 58.126 45.000 13.93 0.00 0.00 3.32
534 535 2.673976 TTTTTGGTTCGTTCGCTAGC 57.326 45.000 4.06 4.06 0.00 3.42
553 554 2.107552 TGGAGATCTTGACCGGGTTTTT 59.892 45.455 6.32 0.00 0.00 1.94
554 555 1.702957 TGGAGATCTTGACCGGGTTTT 59.297 47.619 6.32 0.00 0.00 2.43
555 556 1.279271 CTGGAGATCTTGACCGGGTTT 59.721 52.381 6.32 0.00 0.00 3.27
556 557 0.905357 CTGGAGATCTTGACCGGGTT 59.095 55.000 6.32 0.00 0.00 4.11
557 558 1.617947 GCTGGAGATCTTGACCGGGT 61.618 60.000 6.32 0.00 0.00 5.28
558 559 1.144936 GCTGGAGATCTTGACCGGG 59.855 63.158 6.32 0.00 0.00 5.73
559 560 1.144936 GGCTGGAGATCTTGACCGG 59.855 63.158 0.00 0.00 0.00 5.28
560 561 1.227089 CGGCTGGAGATCTTGACCG 60.227 63.158 11.41 11.41 0.00 4.79
561 562 0.103937 CTCGGCTGGAGATCTTGACC 59.896 60.000 0.00 0.00 46.23 4.02
562 563 1.107114 TCTCGGCTGGAGATCTTGAC 58.893 55.000 0.00 0.00 46.80 3.18
563 564 3.596362 TCTCGGCTGGAGATCTTGA 57.404 52.632 0.00 0.00 46.80 3.02
570 571 0.605589 AAGTGAAGTCTCGGCTGGAG 59.394 55.000 0.00 0.00 44.58 3.86
571 572 1.544691 GTAAGTGAAGTCTCGGCTGGA 59.455 52.381 0.00 0.00 0.00 3.86
572 573 1.732732 CGTAAGTGAAGTCTCGGCTGG 60.733 57.143 0.00 0.00 0.00 4.85
573 574 1.618861 CGTAAGTGAAGTCTCGGCTG 58.381 55.000 0.00 0.00 0.00 4.85
574 575 0.109226 GCGTAAGTGAAGTCTCGGCT 60.109 55.000 0.00 0.00 41.68 5.52
575 576 0.109226 AGCGTAAGTGAAGTCTCGGC 60.109 55.000 0.00 0.00 41.68 5.54
576 577 2.251893 GAAGCGTAAGTGAAGTCTCGG 58.748 52.381 0.00 0.00 41.68 4.63
577 578 1.905687 CGAAGCGTAAGTGAAGTCTCG 59.094 52.381 0.00 0.00 41.68 4.04
578 579 2.909863 GACGAAGCGTAAGTGAAGTCTC 59.090 50.000 0.00 0.00 41.37 3.36
579 580 2.292569 TGACGAAGCGTAAGTGAAGTCT 59.707 45.455 0.00 0.00 41.37 3.24
580 581 2.658285 TGACGAAGCGTAAGTGAAGTC 58.342 47.619 0.00 0.00 41.37 3.01
581 582 2.787601 TGACGAAGCGTAAGTGAAGT 57.212 45.000 0.00 0.00 41.37 3.01
582 583 3.242518 TCATGACGAAGCGTAAGTGAAG 58.757 45.455 0.00 0.00 41.37 3.02
583 584 3.242518 CTCATGACGAAGCGTAAGTGAA 58.757 45.455 0.00 0.00 41.37 3.18
584 585 2.863739 CTCATGACGAAGCGTAAGTGA 58.136 47.619 0.00 0.00 41.37 3.41
585 586 1.321743 GCTCATGACGAAGCGTAAGTG 59.678 52.381 0.00 0.00 41.37 3.16
586 587 1.630148 GCTCATGACGAAGCGTAAGT 58.370 50.000 0.00 0.00 41.37 2.24
587 588 0.567968 CGCTCATGACGAAGCGTAAG 59.432 55.000 16.43 0.00 44.50 2.34
588 589 2.648972 CGCTCATGACGAAGCGTAA 58.351 52.632 16.43 0.00 44.50 3.18
589 590 4.377471 CGCTCATGACGAAGCGTA 57.623 55.556 16.43 0.00 44.50 4.42
592 593 1.840181 TGTATCGCTCATGACGAAGC 58.160 50.000 19.30 15.66 43.71 3.86
593 594 5.035784 TCTATGTATCGCTCATGACGAAG 57.964 43.478 19.30 13.57 43.71 3.79
594 595 5.432885 TTCTATGTATCGCTCATGACGAA 57.567 39.130 19.30 8.15 43.71 3.85
595 596 5.629079 ATTCTATGTATCGCTCATGACGA 57.371 39.130 18.22 18.22 44.75 4.20
596 597 6.547283 ACTATTCTATGTATCGCTCATGACG 58.453 40.000 10.28 10.28 0.00 4.35
597 598 8.642885 CAAACTATTCTATGTATCGCTCATGAC 58.357 37.037 0.00 0.00 0.00 3.06
598 599 7.329471 GCAAACTATTCTATGTATCGCTCATGA 59.671 37.037 0.00 0.00 0.00 3.07
599 600 7.116805 TGCAAACTATTCTATGTATCGCTCATG 59.883 37.037 0.00 0.00 0.00 3.07
600 601 7.154656 TGCAAACTATTCTATGTATCGCTCAT 58.845 34.615 0.00 0.00 0.00 2.90
601 602 6.512297 TGCAAACTATTCTATGTATCGCTCA 58.488 36.000 0.00 0.00 0.00 4.26
602 603 6.642950 ACTGCAAACTATTCTATGTATCGCTC 59.357 38.462 0.00 0.00 0.00 5.03
603 604 6.422100 CACTGCAAACTATTCTATGTATCGCT 59.578 38.462 0.00 0.00 0.00 4.93
604 605 6.420903 TCACTGCAAACTATTCTATGTATCGC 59.579 38.462 0.00 0.00 0.00 4.58
605 606 7.930513 TCACTGCAAACTATTCTATGTATCG 57.069 36.000 0.00 0.00 0.00 2.92
606 607 9.319143 AGTTCACTGCAAACTATTCTATGTATC 57.681 33.333 0.33 0.00 35.25 2.24
607 608 9.319143 GAGTTCACTGCAAACTATTCTATGTAT 57.681 33.333 2.29 0.00 37.10 2.29
608 609 8.311109 TGAGTTCACTGCAAACTATTCTATGTA 58.689 33.333 2.29 0.00 37.10 2.29
609 610 7.161404 TGAGTTCACTGCAAACTATTCTATGT 58.839 34.615 2.29 0.00 37.10 2.29
610 611 7.601073 TGAGTTCACTGCAAACTATTCTATG 57.399 36.000 2.29 0.00 37.10 2.23
611 612 6.314896 GCTGAGTTCACTGCAAACTATTCTAT 59.685 38.462 2.29 0.00 37.10 1.98
612 613 5.639506 GCTGAGTTCACTGCAAACTATTCTA 59.360 40.000 2.29 0.00 37.10 2.10
613 614 4.453819 GCTGAGTTCACTGCAAACTATTCT 59.546 41.667 2.29 0.00 37.10 2.40
614 615 4.453819 AGCTGAGTTCACTGCAAACTATTC 59.546 41.667 2.29 0.00 37.10 1.75
615 616 4.392940 AGCTGAGTTCACTGCAAACTATT 58.607 39.130 2.29 0.00 37.10 1.73
616 617 4.013267 AGCTGAGTTCACTGCAAACTAT 57.987 40.909 2.29 0.00 37.10 2.12
617 618 3.475566 AGCTGAGTTCACTGCAAACTA 57.524 42.857 2.29 0.00 37.10 2.24
618 619 2.338577 AGCTGAGTTCACTGCAAACT 57.661 45.000 1.89 1.89 39.61 2.66
619 620 2.542411 CCAAGCTGAGTTCACTGCAAAC 60.542 50.000 0.00 0.00 37.23 2.93
635 636 1.172812 AAACTGAAGACGGCCCAAGC 61.173 55.000 0.00 0.00 38.76 4.01
637 638 0.821711 CCAAACTGAAGACGGCCCAA 60.822 55.000 0.00 0.00 0.00 4.12
642 643 2.224066 ACTCTGACCAAACTGAAGACGG 60.224 50.000 0.00 0.00 0.00 4.79
683 687 1.693083 GGTCTTATGTCGTGGCGCAC 61.693 60.000 10.83 4.68 0.00 5.34
762 766 3.881089 GGGCACAGTAAACAGTAAACAGT 59.119 43.478 0.00 0.00 0.00 3.55
763 767 4.134563 AGGGCACAGTAAACAGTAAACAG 58.865 43.478 0.00 0.00 0.00 3.16
764 768 4.131596 GAGGGCACAGTAAACAGTAAACA 58.868 43.478 0.00 0.00 0.00 2.83
765 769 4.386711 AGAGGGCACAGTAAACAGTAAAC 58.613 43.478 0.00 0.00 0.00 2.01
766 770 4.347000 AGAGAGGGCACAGTAAACAGTAAA 59.653 41.667 0.00 0.00 0.00 2.01
767 771 3.901844 AGAGAGGGCACAGTAAACAGTAA 59.098 43.478 0.00 0.00 0.00 2.24
768 772 3.507411 AGAGAGGGCACAGTAAACAGTA 58.493 45.455 0.00 0.00 0.00 2.74
769 773 2.300437 GAGAGAGGGCACAGTAAACAGT 59.700 50.000 0.00 0.00 0.00 3.55
823 827 1.303561 GAGTGGCTGCCATGGTTCA 60.304 57.895 26.22 2.41 35.28 3.18
824 828 2.401766 CGAGTGGCTGCCATGGTTC 61.402 63.158 26.22 17.75 35.28 3.62
878 882 1.810532 CACGAGAGGGTAGGCAGAC 59.189 63.158 0.00 0.00 0.00 3.51
903 907 1.390565 GAGGAAGAAGACGGGATCGA 58.609 55.000 0.00 0.00 40.11 3.59
909 913 2.763448 AGAATCAGGAGGAAGAAGACGG 59.237 50.000 0.00 0.00 0.00 4.79
923 930 0.811915 ACACCTCGGTCGAGAATCAG 59.188 55.000 20.34 6.94 44.53 2.90
943 950 1.154980 CGTTGCAAACCGACGTACG 60.155 57.895 15.01 15.01 46.28 3.67
944 951 4.784128 CGTTGCAAACCGACGTAC 57.216 55.556 0.00 0.00 46.28 3.67
951 958 1.852067 ATCAGCCGACGTTGCAAACC 61.852 55.000 0.00 0.00 46.28 3.27
962 973 2.893449 CGTCCGATCGATCAGCCGA 61.893 63.158 24.40 11.06 43.16 5.54
1157 1182 1.915769 AGCTTGGCCTCGAGGAAGT 60.916 57.895 35.69 16.47 37.39 3.01
1353 1378 0.944311 GTTCGTGCTCTCGCCTTTGA 60.944 55.000 0.00 0.00 34.43 2.69
1360 1385 0.097150 TGAGATCGTTCGTGCTCTCG 59.903 55.000 13.92 0.00 37.53 4.04
1415 1440 4.539870 CTCAACACAATCCACACATCAAC 58.460 43.478 0.00 0.00 0.00 3.18
1423 1448 1.335324 GCACAGCTCAACACAATCCAC 60.335 52.381 0.00 0.00 0.00 4.02
1426 1451 0.953727 TGGCACAGCTCAACACAATC 59.046 50.000 0.00 0.00 0.00 2.67
1497 1522 3.788766 CGTGCAGGTACTTGCCGC 61.789 66.667 25.24 17.08 34.60 6.53
1634 1659 9.812347 TCCATGATCCAAGTATAAAATTAGCAT 57.188 29.630 0.00 0.00 0.00 3.79
1635 1660 9.812347 ATCCATGATCCAAGTATAAAATTAGCA 57.188 29.630 0.00 0.00 0.00 3.49
1933 2000 2.366590 ACAGCTCAGTTCATCAGTGTGA 59.633 45.455 0.00 0.00 0.00 3.58
1957 2024 1.497278 CCACCATCGTCTGCGTTTG 59.503 57.895 0.00 0.00 39.49 2.93
1961 2028 4.794439 TCGCCACCATCGTCTGCG 62.794 66.667 0.00 0.00 40.12 5.18
2148 2215 4.440127 GCCATGCCCTTGTTGCGG 62.440 66.667 0.00 0.00 0.00 5.69
2254 2321 0.755698 TCCTGGATGCGGAGGTAGTC 60.756 60.000 0.00 0.00 0.00 2.59
2310 2377 4.015406 ATGTTCTCGGGCGTGGCA 62.015 61.111 0.00 0.00 0.00 4.92
2448 2515 2.817396 GAGAGCTGCCTGGCGAAC 60.817 66.667 14.98 5.72 37.29 3.95
2526 2593 1.404315 GCTAAGCTACAAGGTCAGCGT 60.404 52.381 0.00 0.00 42.74 5.07
2533 2600 0.108138 AGCCACGCTAAGCTACAAGG 60.108 55.000 0.00 0.00 36.99 3.61
2576 2643 5.073144 TCTCTATCTATCCCCGCCAAAAATT 59.927 40.000 0.00 0.00 0.00 1.82
2586 2660 6.708502 GTGAAAAGCTTTCTCTATCTATCCCC 59.291 42.308 13.10 0.00 0.00 4.81
2594 2668 9.638176 ATTATCCATGTGAAAAGCTTTCTCTAT 57.362 29.630 13.10 2.87 0.00 1.98
2607 2681 8.592529 TCATTTCCTTTCATTATCCATGTGAA 57.407 30.769 0.00 0.00 34.06 3.18
2608 2682 8.635328 CATCATTTCCTTTCATTATCCATGTGA 58.365 33.333 0.00 0.00 34.06 3.58
2633 2707 7.333528 AGTGTTGTTATTTTTCTTGAGCTCA 57.666 32.000 13.74 13.74 0.00 4.26
2688 2762 4.886579 AGGCATTTTGGTTTCATCAAGTC 58.113 39.130 0.00 0.00 0.00 3.01
2708 2782 2.372264 CCATGGTGACCAATTGAGAGG 58.628 52.381 9.06 0.00 36.95 3.69
2725 2799 5.473504 GTCGAAAGGGATATACAATTGCCAT 59.526 40.000 5.05 1.78 0.00 4.40
2745 2819 8.836268 TGATTTATTCATGATGATGATGTCGA 57.164 30.769 0.00 0.00 38.43 4.20
2758 2832 9.338291 CTCTTGTTCACTGTTGATTTATTCATG 57.662 33.333 0.00 0.00 33.34 3.07
2760 2834 8.675705 TCTCTTGTTCACTGTTGATTTATTCA 57.324 30.769 0.00 0.00 0.00 2.57
2761 2835 7.748241 GCTCTCTTGTTCACTGTTGATTTATTC 59.252 37.037 0.00 0.00 0.00 1.75
2762 2836 7.229306 TGCTCTCTTGTTCACTGTTGATTTATT 59.771 33.333 0.00 0.00 0.00 1.40
2763 2837 6.712095 TGCTCTCTTGTTCACTGTTGATTTAT 59.288 34.615 0.00 0.00 0.00 1.40
2764 2838 6.054941 TGCTCTCTTGTTCACTGTTGATTTA 58.945 36.000 0.00 0.00 0.00 1.40
2765 2839 4.883585 TGCTCTCTTGTTCACTGTTGATTT 59.116 37.500 0.00 0.00 0.00 2.17
2782 2856 3.414549 TTTTGTTGGTCGTTTGCTCTC 57.585 42.857 0.00 0.00 0.00 3.20
2785 2859 5.869888 TGTAAATTTTTGTTGGTCGTTTGCT 59.130 32.000 0.00 0.00 0.00 3.91
2821 2895 2.489938 TGAAGCTTGCCGAAATAGGT 57.510 45.000 2.10 0.00 0.00 3.08
2829 2903 6.455913 CCATTCATTTATTTTGAAGCTTGCCG 60.456 38.462 2.10 0.00 36.60 5.69
2885 2961 4.164981 TCCCAGTGTTCTGTTGTATAGGT 58.835 43.478 0.00 0.00 39.82 3.08
2918 2994 0.318275 GCAGAGTCCCGATGATCGTC 60.318 60.000 14.27 4.73 38.40 4.20
2968 3045 5.582225 TGCCTGTGCAAGTTACTGTTTGC 62.582 47.826 8.38 8.38 46.66 3.68
3169 3246 9.358872 GACAATTTCTTGGGAGAATTTTACATC 57.641 33.333 0.00 0.00 41.35 3.06
3348 3425 2.165845 GCCATCTTCTGCAGCAAGATTT 59.834 45.455 25.81 13.55 38.33 2.17
3356 3433 6.098679 GTGTAGATATAGCCATCTTCTGCAG 58.901 44.000 7.63 7.63 36.63 4.41
3480 3557 4.684724 AGTGATGTGTTCCTTCCTACCTA 58.315 43.478 0.00 0.00 0.00 3.08
3482 3559 3.983044 AGTGATGTGTTCCTTCCTACC 57.017 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.