Multiple sequence alignment - TraesCS4A01G017900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G017900 chr4A 100.000 3548 0 0 1 3548 11777119 11773572 0.000000e+00 6553.0
1 TraesCS4A01G017900 chr4D 88.652 2670 180 48 863 3451 455756965 455759592 0.000000e+00 3138.0
2 TraesCS4A01G017900 chr4D 89.600 750 50 5 1 722 293372899 293372150 0.000000e+00 928.0
3 TraesCS4A01G017900 chr4D 89.726 730 55 6 1 712 41720517 41719790 0.000000e+00 915.0
4 TraesCS4A01G017900 chr4D 83.673 98 8 2 783 880 455756857 455756946 6.310000e-13 86.1
5 TraesCS4A01G017900 chr4B 90.654 2065 125 17 780 2806 569761799 569763833 0.000000e+00 2682.0
6 TraesCS4A01G017900 chr4B 87.064 688 72 7 2847 3518 569763825 569764511 0.000000e+00 761.0
7 TraesCS4A01G017900 chr4B 84.072 722 90 14 1 714 646559444 646560148 0.000000e+00 673.0
8 TraesCS4A01G017900 chr7D 89.603 731 54 3 1 710 562193744 562193015 0.000000e+00 909.0
9 TraesCS4A01G017900 chr7D 88.982 717 56 10 17 712 576159809 576160523 0.000000e+00 865.0
10 TraesCS4A01G017900 chr7D 87.364 736 46 16 1 714 565209243 565209953 0.000000e+00 800.0
11 TraesCS4A01G017900 chr7D 97.561 123 3 0 1 123 638445212 638445090 9.980000e-51 211.0
12 TraesCS4A01G017900 chr2D 89.431 738 50 10 1 712 586775773 586776508 0.000000e+00 905.0
13 TraesCS4A01G017900 chr2D 88.889 738 58 7 1 714 6863584 6862847 0.000000e+00 887.0
14 TraesCS4A01G017900 chr2D 88.514 740 61 3 1 716 18302383 18301644 0.000000e+00 874.0
15 TraesCS4A01G017900 chr5D 89.295 738 53 9 1 714 174804609 174805344 0.000000e+00 902.0
16 TraesCS4A01G017900 chr6D 88.451 736 59 5 1 712 452835340 452834607 0.000000e+00 865.0
17 TraesCS4A01G017900 chr6D 87.772 736 51 7 1 712 139291316 139290596 0.000000e+00 824.0
18 TraesCS4A01G017900 chr1D 88.661 732 45 5 1 714 457217099 457217810 0.000000e+00 857.0
19 TraesCS4A01G017900 chr1D 86.406 640 34 12 1 615 310855291 310854680 0.000000e+00 651.0
20 TraesCS4A01G017900 chr1D 88.521 453 17 5 1 431 433909558 433909997 1.890000e-142 516.0
21 TraesCS4A01G017900 chr5A 87.197 742 47 15 1 714 580929342 580930063 0.000000e+00 800.0
22 TraesCS4A01G017900 chr6A 84.000 725 86 10 1 714 530503421 530504126 0.000000e+00 669.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G017900 chr4A 11773572 11777119 3547 True 6553.00 6553 100.0000 1 3548 1 chr4A.!!$R1 3547
1 TraesCS4A01G017900 chr4D 455756857 455759592 2735 False 1612.05 3138 86.1625 783 3451 2 chr4D.!!$F1 2668
2 TraesCS4A01G017900 chr4D 293372150 293372899 749 True 928.00 928 89.6000 1 722 1 chr4D.!!$R2 721
3 TraesCS4A01G017900 chr4D 41719790 41720517 727 True 915.00 915 89.7260 1 712 1 chr4D.!!$R1 711
4 TraesCS4A01G017900 chr4B 569761799 569764511 2712 False 1721.50 2682 88.8590 780 3518 2 chr4B.!!$F2 2738
5 TraesCS4A01G017900 chr4B 646559444 646560148 704 False 673.00 673 84.0720 1 714 1 chr4B.!!$F1 713
6 TraesCS4A01G017900 chr7D 562193015 562193744 729 True 909.00 909 89.6030 1 710 1 chr7D.!!$R1 709
7 TraesCS4A01G017900 chr7D 576159809 576160523 714 False 865.00 865 88.9820 17 712 1 chr7D.!!$F2 695
8 TraesCS4A01G017900 chr7D 565209243 565209953 710 False 800.00 800 87.3640 1 714 1 chr7D.!!$F1 713
9 TraesCS4A01G017900 chr2D 586775773 586776508 735 False 905.00 905 89.4310 1 712 1 chr2D.!!$F1 711
10 TraesCS4A01G017900 chr2D 6862847 6863584 737 True 887.00 887 88.8890 1 714 1 chr2D.!!$R1 713
11 TraesCS4A01G017900 chr2D 18301644 18302383 739 True 874.00 874 88.5140 1 716 1 chr2D.!!$R2 715
12 TraesCS4A01G017900 chr5D 174804609 174805344 735 False 902.00 902 89.2950 1 714 1 chr5D.!!$F1 713
13 TraesCS4A01G017900 chr6D 452834607 452835340 733 True 865.00 865 88.4510 1 712 1 chr6D.!!$R2 711
14 TraesCS4A01G017900 chr6D 139290596 139291316 720 True 824.00 824 87.7720 1 712 1 chr6D.!!$R1 711
15 TraesCS4A01G017900 chr1D 457217099 457217810 711 False 857.00 857 88.6610 1 714 1 chr1D.!!$F2 713
16 TraesCS4A01G017900 chr1D 310854680 310855291 611 True 651.00 651 86.4060 1 615 1 chr1D.!!$R1 614
17 TraesCS4A01G017900 chr5A 580929342 580930063 721 False 800.00 800 87.1970 1 714 1 chr5A.!!$F1 713
18 TraesCS4A01G017900 chr6A 530503421 530504126 705 False 669.00 669 84.0000 1 714 1 chr6A.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 694 0.324738 TGGGCCGCCATTTTTATCCA 60.325 50.0 12.58 0.0 0.00 3.41 F
918 993 0.394352 CAGAGGGTGGGGGAATTTCG 60.394 60.0 0.00 0.0 0.00 3.46 F
1623 1719 0.827368 CCTTCTCAGGGCTACTCACC 59.173 60.0 0.00 0.0 36.36 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2208 0.249741 ATCCGTACGCCATAAGCACC 60.250 55.0 10.49 0.0 44.04 5.01 R
2368 2464 0.326264 CTTAACTCCTGCACAGCCCT 59.674 55.0 0.00 0.0 0.00 5.19 R
3475 3646 0.597568 TGCGAACAAGGAATTGCCAG 59.402 50.0 0.00 0.0 40.02 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.690219 GAGTCGGGCATCACCATCCT 61.690 60.000 0.00 0.00 42.05 3.24
174 188 1.675641 GCGGGCATTGGTGAACTCT 60.676 57.895 0.00 0.00 0.00 3.24
474 504 4.500716 GGGAGCGTTTTTGGAGAAAATGAA 60.501 41.667 7.44 0.00 31.07 2.57
489 519 4.476628 AAATGAAGGGAAATGATGGTGC 57.523 40.909 0.00 0.00 0.00 5.01
655 694 0.324738 TGGGCCGCCATTTTTATCCA 60.325 50.000 12.58 0.00 0.00 3.41
704 743 3.435327 CGAAATGAGTCGTCCCATTGAAA 59.565 43.478 0.00 0.00 36.26 2.69
716 755 5.106157 CGTCCCATTGAAATTGCTCTAAACT 60.106 40.000 0.00 0.00 0.00 2.66
717 756 6.095377 GTCCCATTGAAATTGCTCTAAACTG 58.905 40.000 0.00 0.00 0.00 3.16
719 758 6.267471 TCCCATTGAAATTGCTCTAAACTGTT 59.733 34.615 0.00 0.00 0.00 3.16
722 761 8.277713 CCATTGAAATTGCTCTAAACTGTTTTG 58.722 33.333 11.48 9.64 0.00 2.44
723 762 9.033481 CATTGAAATTGCTCTAAACTGTTTTGA 57.967 29.630 11.48 13.44 0.00 2.69
724 763 7.985634 TGAAATTGCTCTAAACTGTTTTGAC 57.014 32.000 11.48 9.79 0.00 3.18
725 764 6.690957 TGAAATTGCTCTAAACTGTTTTGACG 59.309 34.615 11.48 9.59 0.00 4.35
726 765 3.602390 TGCTCTAAACTGTTTTGACGC 57.398 42.857 11.48 17.41 0.00 5.19
727 766 3.202906 TGCTCTAAACTGTTTTGACGCT 58.797 40.909 23.73 3.52 0.00 5.07
728 767 3.002246 TGCTCTAAACTGTTTTGACGCTG 59.998 43.478 23.73 13.94 0.00 5.18
729 768 3.002348 GCTCTAAACTGTTTTGACGCTGT 59.998 43.478 11.48 0.00 0.00 4.40
730 769 4.518217 CTCTAAACTGTTTTGACGCTGTG 58.482 43.478 11.48 0.00 0.00 3.66
731 770 3.936453 TCTAAACTGTTTTGACGCTGTGT 59.064 39.130 11.48 0.00 0.00 3.72
732 771 2.542766 AACTGTTTTGACGCTGTGTG 57.457 45.000 0.00 0.00 0.00 3.82
733 772 0.732571 ACTGTTTTGACGCTGTGTGG 59.267 50.000 0.00 0.00 0.00 4.17
734 773 1.013596 CTGTTTTGACGCTGTGTGGA 58.986 50.000 0.00 0.00 0.00 4.02
735 774 1.400142 CTGTTTTGACGCTGTGTGGAA 59.600 47.619 0.00 0.00 0.00 3.53
736 775 2.020720 TGTTTTGACGCTGTGTGGAAT 58.979 42.857 0.00 0.00 0.00 3.01
737 776 3.206964 TGTTTTGACGCTGTGTGGAATA 58.793 40.909 0.00 0.00 0.00 1.75
738 777 3.818210 TGTTTTGACGCTGTGTGGAATAT 59.182 39.130 0.00 0.00 0.00 1.28
739 778 4.083537 TGTTTTGACGCTGTGTGGAATATC 60.084 41.667 0.00 0.00 0.00 1.63
740 779 3.610040 TTGACGCTGTGTGGAATATCT 57.390 42.857 0.00 0.00 0.00 1.98
741 780 4.729227 TTGACGCTGTGTGGAATATCTA 57.271 40.909 0.00 0.00 0.00 1.98
742 781 4.041740 TGACGCTGTGTGGAATATCTAC 57.958 45.455 0.00 0.00 0.00 2.59
743 782 3.445805 TGACGCTGTGTGGAATATCTACA 59.554 43.478 0.00 0.00 35.44 2.74
744 783 4.081917 TGACGCTGTGTGGAATATCTACAA 60.082 41.667 0.00 0.00 39.57 2.41
745 784 5.023533 ACGCTGTGTGGAATATCTACAAT 57.976 39.130 0.00 0.00 39.57 2.71
746 785 6.156748 ACGCTGTGTGGAATATCTACAATA 57.843 37.500 0.00 0.00 39.57 1.90
747 786 6.759272 ACGCTGTGTGGAATATCTACAATAT 58.241 36.000 0.00 0.00 39.57 1.28
748 787 6.868864 ACGCTGTGTGGAATATCTACAATATC 59.131 38.462 0.00 0.00 39.57 1.63
749 788 7.093354 CGCTGTGTGGAATATCTACAATATCT 58.907 38.462 0.00 0.00 39.57 1.98
750 789 7.600375 CGCTGTGTGGAATATCTACAATATCTT 59.400 37.037 0.00 0.00 39.57 2.40
751 790 9.929180 GCTGTGTGGAATATCTACAATATCTTA 57.071 33.333 0.00 0.00 39.57 2.10
767 806 9.388506 ACAATATCTTACAAAAGTGATCAGAGG 57.611 33.333 0.00 0.00 34.13 3.69
768 807 9.605275 CAATATCTTACAAAAGTGATCAGAGGA 57.395 33.333 0.00 0.00 34.13 3.71
770 809 9.829507 ATATCTTACAAAAGTGATCAGAGGAAG 57.170 33.333 0.00 0.00 34.13 3.46
771 810 5.934625 TCTTACAAAAGTGATCAGAGGAAGC 59.065 40.000 0.00 0.00 34.13 3.86
772 811 4.090761 ACAAAAGTGATCAGAGGAAGCA 57.909 40.909 0.00 0.00 0.00 3.91
773 812 4.070716 ACAAAAGTGATCAGAGGAAGCAG 58.929 43.478 0.00 0.00 0.00 4.24
774 813 4.070716 CAAAAGTGATCAGAGGAAGCAGT 58.929 43.478 0.00 0.00 0.00 4.40
775 814 5.221722 ACAAAAGTGATCAGAGGAAGCAGTA 60.222 40.000 0.00 0.00 0.00 2.74
776 815 5.489792 AAAGTGATCAGAGGAAGCAGTAA 57.510 39.130 0.00 0.00 0.00 2.24
777 816 5.690464 AAGTGATCAGAGGAAGCAGTAAT 57.310 39.130 0.00 0.00 0.00 1.89
778 817 5.690464 AGTGATCAGAGGAAGCAGTAATT 57.310 39.130 0.00 0.00 0.00 1.40
779 818 6.059787 AGTGATCAGAGGAAGCAGTAATTT 57.940 37.500 0.00 0.00 0.00 1.82
780 819 6.479884 AGTGATCAGAGGAAGCAGTAATTTT 58.520 36.000 0.00 0.00 0.00 1.82
781 820 6.597280 AGTGATCAGAGGAAGCAGTAATTTTC 59.403 38.462 0.00 0.00 0.00 2.29
869 908 2.626266 GGGGAAAAACAACCAGTACAGG 59.374 50.000 2.14 2.14 0.00 4.00
870 909 2.626266 GGGAAAAACAACCAGTACAGGG 59.374 50.000 9.37 5.66 0.00 4.45
881 955 2.146342 CAGTACAGGGCACTTCACTTG 58.854 52.381 0.00 0.00 0.00 3.16
918 993 0.394352 CAGAGGGTGGGGGAATTTCG 60.394 60.000 0.00 0.00 0.00 3.46
924 999 1.304052 TGGGGGAATTTCGGCTGTG 60.304 57.895 0.00 0.00 0.00 3.66
942 1017 2.489938 TGGTACAGCCACATTCTTCC 57.510 50.000 0.00 0.00 43.61 3.46
1402 1498 0.955919 CGCCTTCACCTTCACCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
1458 1554 1.299976 GTTGCCTTCCGACCTCCAT 59.700 57.895 0.00 0.00 0.00 3.41
1496 1592 4.277593 CTGCCTCGGCGAGCTAGG 62.278 72.222 30.55 19.29 45.51 3.02
1623 1719 0.827368 CCTTCTCAGGGCTACTCACC 59.173 60.000 0.00 0.00 36.36 4.02
1672 1768 3.047877 CCCGCCTTGTGTTCGACC 61.048 66.667 0.00 0.00 0.00 4.79
1685 1781 1.191489 TTCGACCAGATGCCTCACCA 61.191 55.000 0.00 0.00 0.00 4.17
1812 1908 3.270877 GACCATGGTGAGTATTGTGTCC 58.729 50.000 25.52 0.00 0.00 4.02
1842 1938 1.282157 ACACTAGGGGATCTTGCAACC 59.718 52.381 0.00 0.00 0.00 3.77
1894 1990 1.265236 TGGTTTTGGATGGATGGTGC 58.735 50.000 0.00 0.00 0.00 5.01
1911 2007 1.286880 GCCACTTCGCAATGCACTT 59.713 52.632 5.91 0.00 0.00 3.16
1923 2019 4.601019 GCAATGCACTTATGGACATGTAC 58.399 43.478 0.00 0.00 0.00 2.90
1926 2022 2.276201 GCACTTATGGACATGTACGCA 58.724 47.619 3.00 0.00 0.00 5.24
1932 2028 0.871722 TGGACATGTACGCAAAGTGC 59.128 50.000 3.00 0.00 40.69 4.40
1965 2061 3.753842 TGAAACACGAGCTTTGTTTGAC 58.246 40.909 24.42 15.06 45.16 3.18
1966 2062 3.189495 TGAAACACGAGCTTTGTTTGACA 59.811 39.130 24.42 16.82 45.16 3.58
1973 2069 3.438087 CGAGCTTTGTTTGACAGGATGAT 59.562 43.478 0.00 0.00 39.69 2.45
2094 2190 1.668151 GAACACTGTGAGGCCGGAC 60.668 63.158 15.86 0.00 0.00 4.79
2129 2225 2.235016 CGGTGCTTATGGCGTACGG 61.235 63.158 18.39 0.00 45.43 4.02
2136 2232 3.125316 GCTTATGGCGTACGGATACAAA 58.875 45.455 18.39 0.00 0.00 2.83
2140 2236 1.156034 GGCGTACGGATACAAAGGCC 61.156 60.000 18.39 0.00 42.39 5.19
2281 2377 4.346709 TCGAGGAGGCATACCAAATGATTA 59.653 41.667 0.00 0.00 39.06 1.75
2285 2381 4.320494 GGAGGCATACCAAATGATTAAGCG 60.320 45.833 0.00 0.00 39.06 4.68
2298 2394 2.842208 TTAAGCGAATGCCAATTCCG 57.158 45.000 0.00 0.00 44.31 4.30
2322 2418 4.783621 GCTGTGATCTGGGGCGCA 62.784 66.667 10.83 3.57 0.00 6.09
2368 2464 2.373169 GGGGATATTGACATGGCAGAGA 59.627 50.000 0.00 0.00 0.00 3.10
2403 2499 5.045066 GGAGTTAAGGAACCTAAACCCAGAT 60.045 44.000 0.00 0.00 36.08 2.90
2430 2526 4.379499 GGTGGTTACTACATTTTGCTCAGC 60.379 45.833 0.61 0.00 0.00 4.26
2451 2547 3.552890 GCGATATGTACACATCTGCTGGA 60.553 47.826 17.75 0.00 37.76 3.86
2460 2556 0.678395 CATCTGCTGGACGGATAGCT 59.322 55.000 8.21 0.00 42.84 3.32
2475 2571 1.407936 TAGCTGAGGCCACAGAGATC 58.592 55.000 31.50 14.84 39.94 2.75
2593 2692 5.717078 AAGATCACAATTCACAAGCATGT 57.283 34.783 0.00 0.00 41.61 3.21
2652 2776 3.073678 TGGATTGGTCACATTTGTCTCG 58.926 45.455 0.00 0.00 0.00 4.04
2661 2785 4.058124 TCACATTTGTCTCGGTCTTCTTG 58.942 43.478 0.00 0.00 0.00 3.02
2684 2808 4.217118 GCCAAGGTGTGATGATTGATATCC 59.783 45.833 0.00 0.00 0.00 2.59
2784 2913 1.016627 CATAGACAATGGCCACACCG 58.983 55.000 8.16 0.00 43.94 4.94
2810 2939 4.682860 GCCATTTTCAGTATGTATGCATGC 59.317 41.667 11.82 11.82 37.88 4.06
2811 2940 5.736777 GCCATTTTCAGTATGTATGCATGCA 60.737 40.000 25.04 25.04 39.68 3.96
2812 2941 6.452242 CCATTTTCAGTATGTATGCATGCAT 58.548 36.000 33.92 33.92 39.68 3.96
2813 2942 6.364976 CCATTTTCAGTATGTATGCATGCATG 59.635 38.462 37.43 23.24 39.68 4.06
2819 2948 6.767423 TCAGTATGTATGCATGCATGTTAAGT 59.233 34.615 37.43 21.65 39.68 2.24
2826 2955 4.717877 TGCATGCATGTTAAGTATAGCCT 58.282 39.130 26.79 0.00 0.00 4.58
2829 2958 5.163814 GCATGCATGTTAAGTATAGCCTAGC 60.164 44.000 26.79 3.32 0.00 3.42
2882 3018 3.694072 GCCCATACTTGATGCTTACACAA 59.306 43.478 0.00 0.00 33.79 3.33
2906 3044 1.322538 GGGGCATTTGCAGTACTGGG 61.323 60.000 23.95 0.00 44.36 4.45
2912 3050 1.178534 TTTGCAGTACTGGGCCTTGC 61.179 55.000 23.95 9.39 35.42 4.01
2961 3103 5.103000 CCCAACATCTTAGTCTTGACTACG 58.897 45.833 9.72 8.61 0.00 3.51
2972 3114 1.000163 CTTGACTACGAGGTGCACACT 60.000 52.381 20.43 13.33 0.00 3.55
3013 3163 1.955778 CATGGGTGAGAAACAAGTGCA 59.044 47.619 0.00 0.00 0.00 4.57
3021 3171 5.088739 GTGAGAAACAAGTGCATATTTCGG 58.911 41.667 0.00 0.00 36.41 4.30
3037 3187 5.878406 ATTTCGGAGACCAGTATCATCTT 57.122 39.130 0.00 0.00 34.32 2.40
3070 3227 3.629398 GCTCACTAATAAATGTGGCTGCT 59.371 43.478 0.00 0.00 35.15 4.24
3075 3232 7.109501 TCACTAATAAATGTGGCTGCTAGAAA 58.890 34.615 0.00 0.00 35.15 2.52
3090 3247 3.302740 GCTAGAAAGCGATGAAATCACCG 60.303 47.826 0.00 0.00 45.97 4.94
3121 3278 5.110814 TCAAGTGATTATACCTTGTGGGG 57.889 43.478 0.00 0.00 40.03 4.96
3128 3285 0.844661 ATACCTTGTGGGGTCCAGCA 60.845 55.000 0.00 0.00 40.48 4.41
3140 3297 3.945921 GGGGTCCAGCAATAGTTACTTTC 59.054 47.826 0.00 0.00 0.00 2.62
3148 3305 6.299604 CAGCAATAGTTACTTTCACGAACTG 58.700 40.000 0.00 0.00 35.17 3.16
3201 3358 6.749139 AGTTCTTAAATTTGAACTCTTGCCC 58.251 36.000 14.88 0.00 46.70 5.36
3220 3377 2.422093 CCCTGCTGGTTTTAGAGGGATC 60.422 54.545 9.00 0.00 45.67 3.36
3222 3379 1.300481 GCTGGTTTTAGAGGGATCGC 58.700 55.000 0.54 0.54 0.00 4.58
3223 3380 1.954927 CTGGTTTTAGAGGGATCGCC 58.045 55.000 6.09 0.00 0.00 5.54
3228 3385 0.908910 TTTAGAGGGATCGCCAGCAA 59.091 50.000 6.09 0.00 35.15 3.91
3229 3386 0.178068 TTAGAGGGATCGCCAGCAAC 59.822 55.000 6.09 0.00 35.15 4.17
3232 3389 0.749454 GAGGGATCGCCAGCAACAAT 60.749 55.000 6.09 0.00 35.15 2.71
3233 3390 1.033746 AGGGATCGCCAGCAACAATG 61.034 55.000 6.09 0.00 35.15 2.82
3235 3404 1.378531 GGATCGCCAGCAACAATGTA 58.621 50.000 0.00 0.00 0.00 2.29
3242 3411 3.182173 CGCCAGCAACAATGTAAACTTTG 59.818 43.478 7.07 7.07 37.14 2.77
3249 3419 8.745837 CAGCAACAATGTAAACTTTGTTTAGAG 58.254 33.333 18.93 11.94 45.75 2.43
3252 3422 9.796120 CAACAATGTAAACTTTGTTTAGAGGAA 57.204 29.630 18.93 0.00 45.75 3.36
3302 3472 9.719355 TTCTGTTGAACTATTAGCAAGTGATAA 57.281 29.630 0.00 0.00 0.00 1.75
3303 3473 9.151471 TCTGTTGAACTATTAGCAAGTGATAAC 57.849 33.333 0.00 0.00 0.00 1.89
3353 3524 8.641499 TGTTGAACCATAAATTGACTGTTTTC 57.359 30.769 0.00 0.00 0.00 2.29
3395 3566 6.228995 ACAGTTAAAGTCTACTAAGTTGCCC 58.771 40.000 0.00 0.00 0.00 5.36
3405 3576 8.383947 AGTCTACTAAGTTGCCCTAAGATTTTT 58.616 33.333 0.00 0.00 0.00 1.94
3438 3609 5.766590 TGTTCTGAGTATCCCTCACAGATA 58.233 41.667 0.00 0.00 45.34 1.98
3439 3610 6.377080 TGTTCTGAGTATCCCTCACAGATAT 58.623 40.000 0.00 0.00 45.34 1.63
3451 3622 7.445121 TCCCTCACAGATATCATGTTGATTAC 58.555 38.462 5.32 0.00 38.26 1.89
3492 3663 1.879380 TGACTGGCAATTCCTTGTTCG 59.121 47.619 0.00 0.00 34.69 3.95
3500 3671 3.365820 GCAATTCCTTGTTCGCATCTTTG 59.634 43.478 0.00 0.00 34.69 2.77
3503 3674 4.647424 TTCCTTGTTCGCATCTTTGTTT 57.353 36.364 0.00 0.00 0.00 2.83
3513 3684 3.599514 CGCATCTTTGTTTTACAAGCTCG 59.400 43.478 0.00 0.00 39.53 5.03
3518 3689 5.747565 TCTTTGTTTTACAAGCTCGTCATG 58.252 37.500 0.00 0.00 39.53 3.07
3519 3690 5.295787 TCTTTGTTTTACAAGCTCGTCATGT 59.704 36.000 0.00 0.00 39.53 3.21
3520 3691 5.493133 TTGTTTTACAAGCTCGTCATGTT 57.507 34.783 0.00 0.00 32.34 2.71
3521 3692 5.090652 TGTTTTACAAGCTCGTCATGTTC 57.909 39.130 0.00 0.00 0.00 3.18
3522 3693 4.814234 TGTTTTACAAGCTCGTCATGTTCT 59.186 37.500 0.00 0.00 0.00 3.01
3523 3694 4.990543 TTTACAAGCTCGTCATGTTCTG 57.009 40.909 0.00 0.00 0.00 3.02
3524 3695 1.800805 ACAAGCTCGTCATGTTCTGG 58.199 50.000 0.00 0.00 0.00 3.86
3525 3696 1.081892 CAAGCTCGTCATGTTCTGGG 58.918 55.000 0.00 0.00 0.00 4.45
3526 3697 0.976641 AAGCTCGTCATGTTCTGGGA 59.023 50.000 0.00 0.00 0.00 4.37
3527 3698 0.976641 AGCTCGTCATGTTCTGGGAA 59.023 50.000 0.00 0.00 0.00 3.97
3528 3699 1.066573 AGCTCGTCATGTTCTGGGAAG 60.067 52.381 0.00 0.00 0.00 3.46
3529 3700 2.009042 GCTCGTCATGTTCTGGGAAGG 61.009 57.143 0.00 0.00 0.00 3.46
3530 3701 0.613260 TCGTCATGTTCTGGGAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
3531 3702 0.392998 CGTCATGTTCTGGGAAGGGG 60.393 60.000 0.00 0.00 0.00 4.79
3532 3703 0.991920 GTCATGTTCTGGGAAGGGGA 59.008 55.000 0.00 0.00 0.00 4.81
3533 3704 1.566231 GTCATGTTCTGGGAAGGGGAT 59.434 52.381 0.00 0.00 0.00 3.85
3534 3705 2.024941 GTCATGTTCTGGGAAGGGGATT 60.025 50.000 0.00 0.00 0.00 3.01
3535 3706 2.654385 TCATGTTCTGGGAAGGGGATTT 59.346 45.455 0.00 0.00 0.00 2.17
3536 3707 2.899303 TGTTCTGGGAAGGGGATTTC 57.101 50.000 0.00 0.00 0.00 2.17
3537 3708 2.358258 TGTTCTGGGAAGGGGATTTCT 58.642 47.619 0.00 0.00 0.00 2.52
3538 3709 2.721906 TGTTCTGGGAAGGGGATTTCTT 59.278 45.455 0.00 0.00 0.00 2.52
3539 3710 3.245264 TGTTCTGGGAAGGGGATTTCTTC 60.245 47.826 0.00 0.00 39.73 2.87
3540 3711 2.642982 TCTGGGAAGGGGATTTCTTCA 58.357 47.619 6.24 0.00 41.59 3.02
3541 3712 2.308866 TCTGGGAAGGGGATTTCTTCAC 59.691 50.000 6.24 3.11 43.06 3.18
3542 3713 2.310052 CTGGGAAGGGGATTTCTTCACT 59.690 50.000 7.46 0.00 43.14 3.41
3543 3714 2.308866 TGGGAAGGGGATTTCTTCACTC 59.691 50.000 7.46 0.00 43.14 3.51
3544 3715 2.578480 GGGAAGGGGATTTCTTCACTCT 59.422 50.000 6.24 0.00 40.46 3.24
3545 3716 3.615155 GGAAGGGGATTTCTTCACTCTG 58.385 50.000 6.24 0.00 41.59 3.35
3546 3717 3.615155 GAAGGGGATTTCTTCACTCTGG 58.385 50.000 0.00 0.00 40.08 3.86
3547 3718 2.637165 AGGGGATTTCTTCACTCTGGT 58.363 47.619 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.180017 GCTCGTCGGCGTTTCCTA 59.820 61.111 10.18 0.00 39.49 2.94
102 103 4.385405 GCCAGCACAGCGTCCTCT 62.385 66.667 0.00 0.00 0.00 3.69
162 176 0.877071 CGCAGCAAGAGTTCACCAAT 59.123 50.000 0.00 0.00 0.00 3.16
246 263 1.627297 GGGAGTCGGCCAAGAGGAAT 61.627 60.000 2.24 0.00 36.89 3.01
474 504 0.685458 GCAGGCACCATCATTTCCCT 60.685 55.000 0.00 0.00 0.00 4.20
506 536 0.902531 CCTACTCCTCTTTTCGGGCA 59.097 55.000 0.00 0.00 0.00 5.36
512 542 1.448013 GCGCGCCTACTCCTCTTTT 60.448 57.895 23.24 0.00 0.00 2.27
513 543 2.184579 GCGCGCCTACTCCTCTTT 59.815 61.111 23.24 0.00 0.00 2.52
655 694 2.356194 GTACGTTTGGGTCGGCGT 60.356 61.111 6.85 0.00 40.76 5.68
670 709 1.446445 CATTTCGTCCGCCCACGTA 60.446 57.895 0.00 0.00 40.79 3.57
694 733 5.774690 ACAGTTTAGAGCAATTTCAATGGGA 59.225 36.000 0.00 0.00 0.00 4.37
704 743 4.275936 AGCGTCAAAACAGTTTAGAGCAAT 59.724 37.500 0.00 0.00 0.00 3.56
716 755 1.454201 TTCCACACAGCGTCAAAACA 58.546 45.000 0.00 0.00 0.00 2.83
717 756 2.774439 ATTCCACACAGCGTCAAAAC 57.226 45.000 0.00 0.00 0.00 2.43
719 758 3.937814 AGATATTCCACACAGCGTCAAA 58.062 40.909 0.00 0.00 0.00 2.69
722 761 4.041740 TGTAGATATTCCACACAGCGTC 57.958 45.455 0.00 0.00 0.00 5.19
723 762 4.465632 TTGTAGATATTCCACACAGCGT 57.534 40.909 0.00 0.00 0.00 5.07
724 763 7.093354 AGATATTGTAGATATTCCACACAGCG 58.907 38.462 0.00 0.00 0.00 5.18
725 764 8.839310 AAGATATTGTAGATATTCCACACAGC 57.161 34.615 0.00 0.00 0.00 4.40
741 780 9.388506 CCTCTGATCACTTTTGTAAGATATTGT 57.611 33.333 0.00 0.00 35.30 2.71
742 781 9.605275 TCCTCTGATCACTTTTGTAAGATATTG 57.395 33.333 0.00 0.00 35.30 1.90
744 783 9.829507 CTTCCTCTGATCACTTTTGTAAGATAT 57.170 33.333 0.00 0.00 35.30 1.63
745 784 7.766278 GCTTCCTCTGATCACTTTTGTAAGATA 59.234 37.037 0.00 0.00 35.30 1.98
746 785 6.597280 GCTTCCTCTGATCACTTTTGTAAGAT 59.403 38.462 0.00 0.00 35.30 2.40
747 786 5.934625 GCTTCCTCTGATCACTTTTGTAAGA 59.065 40.000 0.00 0.00 35.30 2.10
748 787 5.702670 TGCTTCCTCTGATCACTTTTGTAAG 59.297 40.000 0.00 0.00 37.40 2.34
749 788 5.620206 TGCTTCCTCTGATCACTTTTGTAA 58.380 37.500 0.00 0.00 0.00 2.41
750 789 5.221722 ACTGCTTCCTCTGATCACTTTTGTA 60.222 40.000 0.00 0.00 0.00 2.41
751 790 4.070716 CTGCTTCCTCTGATCACTTTTGT 58.929 43.478 0.00 0.00 0.00 2.83
752 791 4.070716 ACTGCTTCCTCTGATCACTTTTG 58.929 43.478 0.00 0.00 0.00 2.44
753 792 4.363991 ACTGCTTCCTCTGATCACTTTT 57.636 40.909 0.00 0.00 0.00 2.27
754 793 5.489792 TTACTGCTTCCTCTGATCACTTT 57.510 39.130 0.00 0.00 0.00 2.66
755 794 5.690464 ATTACTGCTTCCTCTGATCACTT 57.310 39.130 0.00 0.00 0.00 3.16
756 795 5.690464 AATTACTGCTTCCTCTGATCACT 57.310 39.130 0.00 0.00 0.00 3.41
757 796 6.597280 AGAAAATTACTGCTTCCTCTGATCAC 59.403 38.462 0.00 0.00 0.00 3.06
758 797 6.715280 AGAAAATTACTGCTTCCTCTGATCA 58.285 36.000 0.00 0.00 0.00 2.92
759 798 7.622893 AAGAAAATTACTGCTTCCTCTGATC 57.377 36.000 0.00 0.00 0.00 2.92
760 799 9.692325 ATAAAGAAAATTACTGCTTCCTCTGAT 57.308 29.630 0.00 0.00 0.00 2.90
761 800 9.520515 AATAAAGAAAATTACTGCTTCCTCTGA 57.479 29.630 0.00 0.00 0.00 3.27
766 805 9.803315 CCCTTAATAAAGAAAATTACTGCTTCC 57.197 33.333 0.00 0.00 34.37 3.46
769 808 9.309224 ACACCCTTAATAAAGAAAATTACTGCT 57.691 29.630 0.00 0.00 34.37 4.24
770 809 9.923143 AACACCCTTAATAAAGAAAATTACTGC 57.077 29.630 0.00 0.00 34.37 4.40
778 817 8.354426 GCAGTACAAACACCCTTAATAAAGAAA 58.646 33.333 0.00 0.00 34.37 2.52
779 818 7.722285 AGCAGTACAAACACCCTTAATAAAGAA 59.278 33.333 0.00 0.00 34.37 2.52
780 819 7.228590 AGCAGTACAAACACCCTTAATAAAGA 58.771 34.615 0.00 0.00 34.37 2.52
781 820 7.448748 AGCAGTACAAACACCCTTAATAAAG 57.551 36.000 0.00 0.00 0.00 1.85
848 887 2.626266 CCTGTACTGGTTGTTTTTCCCC 59.374 50.000 10.53 0.00 0.00 4.81
849 888 2.626266 CCCTGTACTGGTTGTTTTTCCC 59.374 50.000 16.71 0.00 0.00 3.97
850 889 2.035449 GCCCTGTACTGGTTGTTTTTCC 59.965 50.000 16.71 0.00 0.00 3.13
861 900 2.146342 CAAGTGAAGTGCCCTGTACTG 58.854 52.381 0.00 0.00 0.00 2.74
869 908 4.335594 AGTTGAGTTAACAAGTGAAGTGCC 59.664 41.667 8.61 0.00 41.88 5.01
870 909 5.485662 AGTTGAGTTAACAAGTGAAGTGC 57.514 39.130 8.61 0.00 41.88 4.40
881 955 5.179555 CCCTCTGTAGCAAAGTTGAGTTAAC 59.820 44.000 0.00 0.00 39.65 2.01
924 999 2.084546 GTGGAAGAATGTGGCTGTACC 58.915 52.381 0.00 0.00 39.84 3.34
934 1009 2.028420 TCGCTCCATGTGGAAGAATG 57.972 50.000 2.97 0.00 44.91 2.67
936 1011 1.071542 TGTTCGCTCCATGTGGAAGAA 59.928 47.619 12.67 12.67 44.91 2.52
942 1017 1.462283 CTGTTCTGTTCGCTCCATGTG 59.538 52.381 0.00 0.00 0.00 3.21
1402 1498 1.904032 GGGAGCAGGACTTGAGGAG 59.096 63.158 0.00 0.00 0.00 3.69
1440 1536 1.026718 CATGGAGGTCGGAAGGCAAC 61.027 60.000 0.00 0.00 37.54 4.17
1443 1539 2.514824 GCATGGAGGTCGGAAGGC 60.515 66.667 0.00 0.00 0.00 4.35
1623 1719 2.393768 ACTGGCTTTGAGATGCGCG 61.394 57.895 0.00 0.00 0.00 6.86
1672 1768 0.545171 ACATCCTGGTGAGGCATCTG 59.455 55.000 0.00 0.00 39.57 2.90
1685 1781 2.872038 GCAGTCCAAGAAACGACATCCT 60.872 50.000 0.00 0.00 0.00 3.24
1827 1923 2.677228 CCGGTTGCAAGATCCCCT 59.323 61.111 0.00 0.00 0.00 4.79
1894 1990 2.478370 CCATAAGTGCATTGCGAAGTGG 60.478 50.000 3.84 5.02 0.00 4.00
1911 2007 2.675844 GCACTTTGCGTACATGTCCATA 59.324 45.455 0.00 0.00 31.71 2.74
1935 2031 0.951040 CTCGTGTTTCAGGGAGGCAC 60.951 60.000 0.00 0.00 0.00 5.01
1937 2033 2.035442 GCTCGTGTTTCAGGGAGGC 61.035 63.158 0.00 0.00 0.00 4.70
1948 2044 1.670811 CCTGTCAAACAAAGCTCGTGT 59.329 47.619 0.00 0.00 0.00 4.49
1950 2046 2.325583 TCCTGTCAAACAAAGCTCGT 57.674 45.000 0.00 0.00 0.00 4.18
1965 2061 1.129917 AGCTCCTCACCATCATCCTG 58.870 55.000 0.00 0.00 0.00 3.86
1966 2062 1.489649 CAAGCTCCTCACCATCATCCT 59.510 52.381 0.00 0.00 0.00 3.24
1973 2069 1.203441 AGATGCCAAGCTCCTCACCA 61.203 55.000 0.00 0.00 0.00 4.17
2021 2117 1.552792 TGTTGTCCAGATCGCCATGTA 59.447 47.619 0.00 0.00 0.00 2.29
2056 2152 1.309950 CCTTCTGCCAGCATCTGATG 58.690 55.000 13.26 13.26 32.44 3.07
2094 2190 3.470567 GCGAGAAGCGTCACACCG 61.471 66.667 1.61 1.31 43.41 4.94
2112 2208 0.249741 ATCCGTACGCCATAAGCACC 60.250 55.000 10.49 0.00 44.04 5.01
2129 2225 1.737793 CCTCAACACGGCCTTTGTATC 59.262 52.381 7.26 0.00 0.00 2.24
2136 2232 3.322466 CCCTCCTCAACACGGCCT 61.322 66.667 0.00 0.00 0.00 5.19
2140 2236 3.649277 CTCGCCCCTCCTCAACACG 62.649 68.421 0.00 0.00 0.00 4.49
2281 2377 0.734889 CTCGGAATTGGCATTCGCTT 59.265 50.000 0.00 0.00 39.99 4.68
2285 2381 2.466846 CATTGCTCGGAATTGGCATTC 58.533 47.619 0.00 0.00 38.54 2.67
2298 2394 1.022735 CCCAGATCACAGCATTGCTC 58.977 55.000 8.54 0.00 36.40 4.26
2322 2418 1.045407 TCCGACAAGCACCAAGTAGT 58.955 50.000 0.00 0.00 0.00 2.73
2368 2464 0.326264 CTTAACTCCTGCACAGCCCT 59.674 55.000 0.00 0.00 0.00 5.19
2403 2499 4.076394 GCAAAATGTAGTAACCACCCTCA 58.924 43.478 0.00 0.00 0.00 3.86
2412 2508 6.761242 ACATATCGCTGAGCAAAATGTAGTAA 59.239 34.615 12.12 0.00 0.00 2.24
2430 2526 3.983988 GTCCAGCAGATGTGTACATATCG 59.016 47.826 22.27 18.31 36.57 2.92
2451 2547 1.680522 CTGTGGCCTCAGCTATCCGT 61.681 60.000 21.14 0.00 39.73 4.69
2460 2556 1.189752 GTCTGATCTCTGTGGCCTCA 58.810 55.000 3.32 5.63 0.00 3.86
2475 2571 2.014335 TCTCATTCATGGCACGTCTG 57.986 50.000 0.00 0.00 0.00 3.51
2652 2776 0.954452 CACACCTTGGCAAGAAGACC 59.046 55.000 28.18 0.00 0.00 3.85
2661 2785 4.217118 GGATATCAATCATCACACCTTGGC 59.783 45.833 4.83 0.00 33.41 4.52
2684 2808 1.660560 GCCAGCAGCCTTACACCATG 61.661 60.000 0.00 0.00 34.35 3.66
2733 2857 5.364157 ACCTGACTCAACTCAACTAGTCTTT 59.636 40.000 0.00 0.00 37.50 2.52
2734 2858 4.896482 ACCTGACTCAACTCAACTAGTCTT 59.104 41.667 0.00 0.00 37.50 3.01
2784 2913 6.135290 TGCATACATACTGAAAATGGCTTC 57.865 37.500 0.00 0.00 0.00 3.86
2791 2920 6.453926 ACATGCATGCATACATACTGAAAA 57.546 33.333 31.73 0.00 33.67 2.29
2810 2939 6.987386 AGTGAGCTAGGCTATACTTAACATG 58.013 40.000 0.00 0.00 39.88 3.21
2811 2940 7.604657 AAGTGAGCTAGGCTATACTTAACAT 57.395 36.000 15.19 0.00 41.20 2.71
2812 2941 7.558807 TGTAAGTGAGCTAGGCTATACTTAACA 59.441 37.037 20.13 17.78 43.31 2.41
2813 2942 7.938715 TGTAAGTGAGCTAGGCTATACTTAAC 58.061 38.462 20.13 16.45 43.31 2.01
2844 2980 7.329746 AGTATGGGCTGGTACATAAATACAT 57.670 36.000 0.00 0.00 38.20 2.29
2861 2997 5.895636 TTTGTGTAAGCATCAAGTATGGG 57.104 39.130 0.00 0.00 35.99 4.00
2882 3018 2.972021 AGTACTGCAAATGCCCCTTTTT 59.028 40.909 2.46 0.00 41.18 1.94
2887 3023 1.322538 CCCAGTACTGCAAATGCCCC 61.323 60.000 17.86 0.00 41.18 5.80
2888 3024 1.948721 GCCCAGTACTGCAAATGCCC 61.949 60.000 17.86 0.00 41.18 5.36
2912 3050 4.340950 TGGTTTTAAAGAAGTTCAGGCCTG 59.659 41.667 27.87 27.87 0.00 4.85
2961 3103 2.028112 TCCTAATGACAGTGTGCACCTC 60.028 50.000 15.69 7.72 0.00 3.85
2972 3114 3.565764 CCAGAGGCAATCCTAATGACA 57.434 47.619 0.00 0.00 44.46 3.58
2999 3149 5.000591 TCCGAAATATGCACTTGTTTCTCA 58.999 37.500 7.62 0.00 0.00 3.27
3013 3163 7.546250 AAGATGATACTGGTCTCCGAAATAT 57.454 36.000 0.00 0.00 0.00 1.28
3021 3171 6.276847 CACAAGGTAAGATGATACTGGTCTC 58.723 44.000 0.00 0.00 0.00 3.36
3090 3247 9.994432 CAAGGTATAATCACTTGAAGTTCATTC 57.006 33.333 6.36 0.00 43.13 2.67
3121 3278 4.927425 TCGTGAAAGTAACTATTGCTGGAC 59.073 41.667 0.00 0.00 0.00 4.02
3128 3285 6.854496 TTGCAGTTCGTGAAAGTAACTATT 57.146 33.333 0.00 0.00 32.35 1.73
3140 3297 4.295870 TCACTACTTACTTGCAGTTCGTG 58.704 43.478 0.00 0.00 0.00 4.35
3148 3305 9.595823 TGGAAATACTATTCACTACTTACTTGC 57.404 33.333 0.00 0.00 0.00 4.01
3180 3337 5.278957 GCAGGGCAAGAGTTCAAATTTAAGA 60.279 40.000 0.00 0.00 0.00 2.10
3201 3358 2.555199 CGATCCCTCTAAAACCAGCAG 58.445 52.381 0.00 0.00 0.00 4.24
3220 3377 2.704725 AGTTTACATTGTTGCTGGCG 57.295 45.000 0.00 0.00 0.00 5.69
3222 3379 6.660887 AAACAAAGTTTACATTGTTGCTGG 57.339 33.333 14.60 0.00 44.01 4.85
3223 3380 8.627487 TCTAAACAAAGTTTACATTGTTGCTG 57.373 30.769 14.60 9.36 44.01 4.41
3235 3404 9.143155 ACCACATTATTCCTCTAAACAAAGTTT 57.857 29.630 0.51 0.51 0.00 2.66
3242 3411 9.310716 GTAGTGTACCACATTATTCCTCTAAAC 57.689 37.037 0.00 0.00 36.74 2.01
3249 3419 8.677148 ATGATTGTAGTGTACCACATTATTCC 57.323 34.615 0.00 0.00 36.74 3.01
3253 3423 9.733556 AGAAAATGATTGTAGTGTACCACATTA 57.266 29.630 0.00 0.00 36.74 1.90
3255 3425 7.665559 ACAGAAAATGATTGTAGTGTACCACAT 59.334 33.333 0.00 0.00 36.74 3.21
3279 3449 9.502091 AAGTTATCACTTGCTAATAGTTCAACA 57.498 29.630 0.00 0.00 42.05 3.33
3302 3472 9.679661 AACCACCAAATTAATTCAAAGAAAAGT 57.320 25.926 0.10 0.00 0.00 2.66
3303 3473 9.934190 CAACCACCAAATTAATTCAAAGAAAAG 57.066 29.630 0.10 0.00 0.00 2.27
3311 3481 7.778470 GTTCAACAACCACCAAATTAATTCA 57.222 32.000 0.10 0.00 0.00 2.57
3370 3541 6.709397 GGGCAACTTAGTAGACTTTAACTGTT 59.291 38.462 0.00 0.00 0.00 3.16
3405 3576 9.832445 GAGGGATACTCAGAACATGTTAAAATA 57.168 33.333 11.95 1.55 45.85 1.40
3422 3593 6.784473 TCAACATGATATCTGTGAGGGATACT 59.216 38.462 0.00 0.00 0.00 2.12
3457 3628 4.655649 TGCCAGTCATACATAGAGAATGGT 59.344 41.667 9.46 0.00 46.18 3.55
3458 3629 5.219343 TGCCAGTCATACATAGAGAATGG 57.781 43.478 3.98 3.98 46.93 3.16
3475 3646 0.597568 TGCGAACAAGGAATTGCCAG 59.402 50.000 0.00 0.00 40.02 4.85
3492 3663 4.537015 ACGAGCTTGTAAAACAAAGATGC 58.463 39.130 4.25 0.00 37.69 3.91
3500 3671 5.140177 CAGAACATGACGAGCTTGTAAAAC 58.860 41.667 6.58 0.00 34.14 2.43
3503 3674 3.325870 CCAGAACATGACGAGCTTGTAA 58.674 45.455 6.58 0.00 34.14 2.41
3513 3684 0.991920 TCCCCTTCCCAGAACATGAC 59.008 55.000 0.00 0.00 0.00 3.06
3518 3689 3.245264 TGAAGAAATCCCCTTCCCAGAAC 60.245 47.826 0.00 0.00 39.30 3.01
3519 3690 2.993146 TGAAGAAATCCCCTTCCCAGAA 59.007 45.455 0.00 0.00 39.30 3.02
3520 3691 2.308866 GTGAAGAAATCCCCTTCCCAGA 59.691 50.000 0.00 0.00 39.30 3.86
3521 3692 2.310052 AGTGAAGAAATCCCCTTCCCAG 59.690 50.000 0.00 0.00 39.30 4.45
3522 3693 2.308866 GAGTGAAGAAATCCCCTTCCCA 59.691 50.000 0.00 0.00 39.30 4.37
3523 3694 2.578480 AGAGTGAAGAAATCCCCTTCCC 59.422 50.000 0.00 0.00 39.30 3.97
3524 3695 3.615155 CAGAGTGAAGAAATCCCCTTCC 58.385 50.000 0.00 0.00 39.30 3.46
3525 3696 3.009584 ACCAGAGTGAAGAAATCCCCTTC 59.990 47.826 0.00 0.00 40.19 3.46
3526 3697 2.989571 ACCAGAGTGAAGAAATCCCCTT 59.010 45.455 0.00 0.00 0.00 3.95
3527 3698 2.637165 ACCAGAGTGAAGAAATCCCCT 58.363 47.619 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.