Multiple sequence alignment - TraesCS4A01G017700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G017700 chr4A 100.000 3983 0 0 1 3983 11719496 11715514 0.000000e+00 7356.0
1 TraesCS4A01G017700 chr4B 92.316 2889 149 32 1140 3983 570084946 570087806 0.000000e+00 4037.0
2 TraesCS4A01G017700 chr4B 83.278 604 47 31 508 1088 570084255 570084827 1.280000e-139 507.0
3 TraesCS4A01G017700 chr4D 89.334 2747 144 58 413 3080 455891478 455894154 0.000000e+00 3312.0
4 TraesCS4A01G017700 chr4D 95.285 912 33 6 3077 3983 455894234 455895140 0.000000e+00 1437.0
5 TraesCS4A01G017700 chr4D 91.379 116 9 1 310 425 455891050 455891164 1.480000e-34 158.0
6 TraesCS4A01G017700 chr4D 96.610 59 2 0 234 292 455890186 455890244 9.110000e-17 99.0
7 TraesCS4A01G017700 chr4D 89.474 76 5 3 621 695 455784243 455784316 4.240000e-15 93.5
8 TraesCS4A01G017700 chr5D 81.529 157 27 2 1973 2128 475382333 475382488 1.160000e-25 128.0
9 TraesCS4A01G017700 chr5D 81.013 158 26 4 1976 2131 365992579 365992734 5.410000e-24 122.0
10 TraesCS4A01G017700 chr5B 81.013 158 26 4 1976 2131 432323431 432323586 5.410000e-24 122.0
11 TraesCS4A01G017700 chr5B 80.769 156 30 0 1973 2128 582773754 582773909 5.410000e-24 122.0
12 TraesCS4A01G017700 chr3D 83.846 130 19 2 2000 2128 61703528 61703400 5.410000e-24 122.0
13 TraesCS4A01G017700 chr3B 83.846 130 19 2 2000 2128 99171500 99171372 5.410000e-24 122.0
14 TraesCS4A01G017700 chr2D 80.255 157 31 0 1978 2134 512686904 512687060 6.990000e-23 119.0
15 TraesCS4A01G017700 chr6A 80.952 84 12 4 192 273 115312653 115312572 3.320000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G017700 chr4A 11715514 11719496 3982 True 7356.0 7356 100.000 1 3983 1 chr4A.!!$R1 3982
1 TraesCS4A01G017700 chr4B 570084255 570087806 3551 False 2272.0 4037 87.797 508 3983 2 chr4B.!!$F1 3475
2 TraesCS4A01G017700 chr4D 455890186 455895140 4954 False 1251.5 3312 93.152 234 3983 4 chr4D.!!$F2 3749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.107268 AAGTCTAAACCCGTTGCGGT 59.893 50.000 6.82 0.00 46.80 5.68 F
437 1552 0.169009 ACGGAGCGTACGGTAGAAAC 59.831 55.000 21.38 7.27 38.73 2.78 F
1337 2573 0.107654 ACGCAGGTTTAGCTCCCATC 60.108 55.000 0.00 0.00 0.00 3.51 F
1914 3194 1.065926 TCGGCAGCAGATCAACAAGAT 60.066 47.619 0.00 0.00 40.48 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 2555 0.107703 TGATGGGAGCTAAACCTGCG 60.108 55.0 0.0 0.0 35.28 5.18 R
1800 3080 0.171231 GGGCGATTTCTTGCACCTTC 59.829 55.0 0.0 0.0 32.95 3.46 R
2479 3759 0.183731 GAGGGGAAATAGGCAGGTGG 59.816 60.0 0.0 0.0 0.00 4.61 R
3242 4605 0.447801 GGTGCTATCACGCAAAGGTG 59.552 55.0 0.0 0.0 44.03 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.844267 GAGAGATGCTCTTCTTCGAGTAC 58.156 47.826 0.00 0.00 41.35 2.73
25 26 4.523083 AGAGATGCTCTTCTTCGAGTACT 58.477 43.478 0.00 0.00 37.60 2.73
26 27 4.574828 AGAGATGCTCTTCTTCGAGTACTC 59.425 45.833 13.18 13.18 37.60 2.59
27 28 6.700609 AGAGATGCTCTTCTTCGAGTACTCG 61.701 48.000 34.21 34.21 45.24 4.18
40 41 3.973657 GAGTACTCGACAAGAACAACCA 58.026 45.455 7.22 0.00 0.00 3.67
41 42 4.365723 GAGTACTCGACAAGAACAACCAA 58.634 43.478 7.22 0.00 0.00 3.67
42 43 4.957296 AGTACTCGACAAGAACAACCAAT 58.043 39.130 0.00 0.00 0.00 3.16
43 44 4.750098 AGTACTCGACAAGAACAACCAATG 59.250 41.667 0.00 0.00 0.00 2.82
44 45 2.290641 ACTCGACAAGAACAACCAATGC 59.709 45.455 0.00 0.00 0.00 3.56
45 46 2.549754 CTCGACAAGAACAACCAATGCT 59.450 45.455 0.00 0.00 0.00 3.79
46 47 2.548057 TCGACAAGAACAACCAATGCTC 59.452 45.455 0.00 0.00 0.00 4.26
47 48 2.290367 CGACAAGAACAACCAATGCTCA 59.710 45.455 0.00 0.00 0.00 4.26
48 49 3.243035 CGACAAGAACAACCAATGCTCAA 60.243 43.478 0.00 0.00 0.00 3.02
49 50 4.681744 GACAAGAACAACCAATGCTCAAA 58.318 39.130 0.00 0.00 0.00 2.69
50 51 5.280654 ACAAGAACAACCAATGCTCAAAT 57.719 34.783 0.00 0.00 0.00 2.32
51 52 5.673514 ACAAGAACAACCAATGCTCAAATT 58.326 33.333 0.00 0.00 0.00 1.82
52 53 6.114767 ACAAGAACAACCAATGCTCAAATTT 58.885 32.000 0.00 0.00 0.00 1.82
53 54 6.598850 ACAAGAACAACCAATGCTCAAATTTT 59.401 30.769 0.00 0.00 0.00 1.82
54 55 7.768120 ACAAGAACAACCAATGCTCAAATTTTA 59.232 29.630 0.00 0.00 0.00 1.52
55 56 7.951530 AGAACAACCAATGCTCAAATTTTAG 57.048 32.000 0.00 0.00 0.00 1.85
56 57 7.725251 AGAACAACCAATGCTCAAATTTTAGA 58.275 30.769 3.51 0.00 0.00 2.10
57 58 8.203485 AGAACAACCAATGCTCAAATTTTAGAA 58.797 29.630 3.51 0.00 0.00 2.10
58 59 7.951530 ACAACCAATGCTCAAATTTTAGAAG 57.048 32.000 3.51 0.00 0.00 2.85
59 60 6.424812 ACAACCAATGCTCAAATTTTAGAAGC 59.575 34.615 3.51 4.50 0.00 3.86
60 61 5.482006 ACCAATGCTCAAATTTTAGAAGCC 58.518 37.500 3.51 0.00 0.00 4.35
61 62 5.011943 ACCAATGCTCAAATTTTAGAAGCCA 59.988 36.000 3.51 0.00 0.00 4.75
62 63 6.110707 CCAATGCTCAAATTTTAGAAGCCAT 58.889 36.000 3.51 0.00 0.00 4.40
63 64 6.596497 CCAATGCTCAAATTTTAGAAGCCATT 59.404 34.615 3.51 1.43 0.00 3.16
64 65 7.120138 CCAATGCTCAAATTTTAGAAGCCATTT 59.880 33.333 3.51 0.00 0.00 2.32
65 66 7.838771 ATGCTCAAATTTTAGAAGCCATTTC 57.161 32.000 3.51 0.00 35.97 2.17
66 67 6.757237 TGCTCAAATTTTAGAAGCCATTTCA 58.243 32.000 3.51 0.00 38.31 2.69
67 68 7.215789 TGCTCAAATTTTAGAAGCCATTTCAA 58.784 30.769 3.51 0.00 38.31 2.69
68 69 7.171337 TGCTCAAATTTTAGAAGCCATTTCAAC 59.829 33.333 3.51 0.00 38.31 3.18
69 70 7.360353 GCTCAAATTTTAGAAGCCATTTCAACC 60.360 37.037 3.51 0.00 38.31 3.77
70 71 7.504403 TCAAATTTTAGAAGCCATTTCAACCA 58.496 30.769 0.00 0.00 38.31 3.67
71 72 7.989741 TCAAATTTTAGAAGCCATTTCAACCAA 59.010 29.630 0.00 0.00 38.31 3.67
72 73 7.967890 AATTTTAGAAGCCATTTCAACCAAG 57.032 32.000 0.00 0.00 38.31 3.61
73 74 6.723298 TTTTAGAAGCCATTTCAACCAAGA 57.277 33.333 0.00 0.00 38.31 3.02
74 75 6.723298 TTTAGAAGCCATTTCAACCAAGAA 57.277 33.333 0.00 0.00 38.31 2.52
75 76 6.723298 TTAGAAGCCATTTCAACCAAGAAA 57.277 33.333 0.00 0.00 41.31 2.52
76 77 4.948847 AGAAGCCATTTCAACCAAGAAAC 58.051 39.130 0.00 0.00 40.03 2.78
77 78 4.405358 AGAAGCCATTTCAACCAAGAAACA 59.595 37.500 0.00 0.00 40.03 2.83
78 79 4.961438 AGCCATTTCAACCAAGAAACAT 57.039 36.364 0.00 0.00 40.03 2.71
79 80 4.634199 AGCCATTTCAACCAAGAAACATG 58.366 39.130 0.00 0.00 40.03 3.21
80 81 3.187022 GCCATTTCAACCAAGAAACATGC 59.813 43.478 0.00 0.00 40.03 4.06
81 82 4.634199 CCATTTCAACCAAGAAACATGCT 58.366 39.130 0.00 0.00 40.03 3.79
82 83 5.058490 CCATTTCAACCAAGAAACATGCTT 58.942 37.500 0.00 0.00 40.03 3.91
83 84 5.178067 CCATTTCAACCAAGAAACATGCTTC 59.822 40.000 0.33 0.33 40.03 3.86
84 85 4.320608 TTCAACCAAGAAACATGCTTCC 57.679 40.909 5.23 0.00 0.00 3.46
85 86 3.565307 TCAACCAAGAAACATGCTTCCT 58.435 40.909 5.23 0.00 0.00 3.36
86 87 3.318839 TCAACCAAGAAACATGCTTCCTG 59.681 43.478 5.23 3.07 0.00 3.86
87 88 3.228188 ACCAAGAAACATGCTTCCTGA 57.772 42.857 8.69 0.00 0.00 3.86
88 89 3.565307 ACCAAGAAACATGCTTCCTGAA 58.435 40.909 8.69 0.00 0.00 3.02
89 90 4.154942 ACCAAGAAACATGCTTCCTGAAT 58.845 39.130 8.69 0.00 0.00 2.57
90 91 4.021719 ACCAAGAAACATGCTTCCTGAATG 60.022 41.667 8.69 0.83 37.72 2.67
91 92 4.021719 CCAAGAAACATGCTTCCTGAATGT 60.022 41.667 8.69 0.00 46.60 2.71
95 96 3.446442 ACATGCTTCCTGAATGTTCCT 57.554 42.857 0.00 0.00 42.12 3.36
96 97 3.350833 ACATGCTTCCTGAATGTTCCTC 58.649 45.455 0.00 0.00 42.12 3.71
97 98 3.245016 ACATGCTTCCTGAATGTTCCTCA 60.245 43.478 0.00 0.00 42.12 3.86
98 99 3.726557 TGCTTCCTGAATGTTCCTCAT 57.273 42.857 0.00 0.00 38.57 2.90
99 100 3.349927 TGCTTCCTGAATGTTCCTCATG 58.650 45.455 0.00 0.00 36.81 3.07
100 101 2.098770 GCTTCCTGAATGTTCCTCATGC 59.901 50.000 0.00 0.00 36.81 4.06
101 102 2.425143 TCCTGAATGTTCCTCATGCC 57.575 50.000 0.00 0.00 36.81 4.40
102 103 1.634973 TCCTGAATGTTCCTCATGCCA 59.365 47.619 0.00 0.00 36.81 4.92
103 104 2.041485 TCCTGAATGTTCCTCATGCCAA 59.959 45.455 0.00 0.00 36.81 4.52
104 105 2.827322 CCTGAATGTTCCTCATGCCAAA 59.173 45.455 0.00 0.00 36.81 3.28
105 106 3.119245 CCTGAATGTTCCTCATGCCAAAG 60.119 47.826 0.00 0.00 36.81 2.77
106 107 2.231964 TGAATGTTCCTCATGCCAAAGC 59.768 45.455 0.00 0.00 36.81 3.51
107 108 2.226962 ATGTTCCTCATGCCAAAGCT 57.773 45.000 0.00 0.00 40.80 3.74
108 109 1.538047 TGTTCCTCATGCCAAAGCTC 58.462 50.000 0.00 0.00 40.80 4.09
109 110 0.813821 GTTCCTCATGCCAAAGCTCC 59.186 55.000 0.00 0.00 40.80 4.70
110 111 0.700564 TTCCTCATGCCAAAGCTCCT 59.299 50.000 0.00 0.00 40.80 3.69
111 112 1.583556 TCCTCATGCCAAAGCTCCTA 58.416 50.000 0.00 0.00 40.80 2.94
112 113 2.130193 TCCTCATGCCAAAGCTCCTAT 58.870 47.619 0.00 0.00 40.80 2.57
113 114 3.317406 TCCTCATGCCAAAGCTCCTATA 58.683 45.455 0.00 0.00 40.80 1.31
114 115 3.326006 TCCTCATGCCAAAGCTCCTATAG 59.674 47.826 0.00 0.00 40.80 1.31
128 129 4.671377 CTCCTATAGCAATCGATCTCTGC 58.329 47.826 11.75 11.75 36.29 4.26
129 130 4.082125 TCCTATAGCAATCGATCTCTGCA 58.918 43.478 19.71 8.60 38.58 4.41
130 131 4.082517 TCCTATAGCAATCGATCTCTGCAC 60.083 45.833 19.71 0.00 38.58 4.57
131 132 3.740631 ATAGCAATCGATCTCTGCACA 57.259 42.857 19.71 9.50 38.58 4.57
132 133 2.391616 AGCAATCGATCTCTGCACAA 57.608 45.000 19.71 0.00 38.58 3.33
133 134 2.277969 AGCAATCGATCTCTGCACAAG 58.722 47.619 19.71 0.00 38.58 3.16
134 135 2.005451 GCAATCGATCTCTGCACAAGT 58.995 47.619 14.23 0.00 36.09 3.16
135 136 2.030213 GCAATCGATCTCTGCACAAGTC 59.970 50.000 14.23 0.00 36.09 3.01
136 137 3.519579 CAATCGATCTCTGCACAAGTCT 58.480 45.455 0.00 0.00 0.00 3.24
137 138 4.676546 CAATCGATCTCTGCACAAGTCTA 58.323 43.478 0.00 0.00 0.00 2.59
138 139 4.991153 ATCGATCTCTGCACAAGTCTAA 57.009 40.909 0.00 0.00 0.00 2.10
139 140 4.783764 TCGATCTCTGCACAAGTCTAAA 57.216 40.909 0.00 0.00 0.00 1.85
140 141 4.486090 TCGATCTCTGCACAAGTCTAAAC 58.514 43.478 0.00 0.00 0.00 2.01
141 142 3.614616 CGATCTCTGCACAAGTCTAAACC 59.385 47.826 0.00 0.00 0.00 3.27
142 143 3.402628 TCTCTGCACAAGTCTAAACCC 57.597 47.619 0.00 0.00 0.00 4.11
143 144 2.069273 CTCTGCACAAGTCTAAACCCG 58.931 52.381 0.00 0.00 0.00 5.28
144 145 1.414919 TCTGCACAAGTCTAAACCCGT 59.585 47.619 0.00 0.00 0.00 5.28
145 146 2.158871 TCTGCACAAGTCTAAACCCGTT 60.159 45.455 0.00 0.00 0.00 4.44
146 147 1.944024 TGCACAAGTCTAAACCCGTTG 59.056 47.619 0.00 0.00 0.00 4.10
147 148 1.334689 GCACAAGTCTAAACCCGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
148 149 1.070175 CACAAGTCTAAACCCGTTGCG 60.070 52.381 0.00 0.00 0.00 4.85
150 151 0.107268 AAGTCTAAACCCGTTGCGGT 59.893 50.000 6.82 0.00 46.80 5.68
155 156 2.716864 AACCCGTTGCGGTTTTCG 59.283 55.556 6.82 0.00 43.88 3.46
156 157 1.818785 AACCCGTTGCGGTTTTCGA 60.819 52.632 6.82 0.00 43.88 3.71
157 158 1.778027 AACCCGTTGCGGTTTTCGAG 61.778 55.000 6.82 0.00 43.88 4.04
158 159 2.554272 CCGTTGCGGTTTTCGAGG 59.446 61.111 0.00 0.00 42.73 4.63
159 160 2.127383 CGTTGCGGTTTTCGAGGC 60.127 61.111 0.00 0.00 42.43 4.70
160 161 2.127383 GTTGCGGTTTTCGAGGCG 60.127 61.111 0.00 0.00 42.43 5.52
161 162 2.589442 TTGCGGTTTTCGAGGCGT 60.589 55.556 0.00 0.00 42.43 5.68
162 163 2.887889 TTGCGGTTTTCGAGGCGTG 61.888 57.895 0.00 0.00 42.43 5.34
163 164 4.736631 GCGGTTTTCGAGGCGTGC 62.737 66.667 0.00 0.00 42.43 5.34
164 165 3.041940 CGGTTTTCGAGGCGTGCT 61.042 61.111 0.00 0.00 42.43 4.40
165 166 1.735198 CGGTTTTCGAGGCGTGCTA 60.735 57.895 0.00 0.00 42.43 3.49
166 167 1.785951 GGTTTTCGAGGCGTGCTAC 59.214 57.895 0.00 0.00 0.00 3.58
167 168 0.669625 GGTTTTCGAGGCGTGCTACT 60.670 55.000 0.00 0.00 0.00 2.57
168 169 0.714439 GTTTTCGAGGCGTGCTACTC 59.286 55.000 0.00 0.00 0.00 2.59
169 170 0.389426 TTTTCGAGGCGTGCTACTCC 60.389 55.000 0.00 0.00 0.00 3.85
170 171 2.221906 TTTCGAGGCGTGCTACTCCC 62.222 60.000 0.00 0.00 0.00 4.30
171 172 4.208686 CGAGGCGTGCTACTCCCC 62.209 72.222 0.00 0.00 0.00 4.81
172 173 2.760385 GAGGCGTGCTACTCCCCT 60.760 66.667 0.00 0.00 0.00 4.79
173 174 2.284699 AGGCGTGCTACTCCCCTT 60.285 61.111 0.00 0.00 0.00 3.95
174 175 2.125106 GGCGTGCTACTCCCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
175 176 2.663196 GCGTGCTACTCCCCTTGT 59.337 61.111 0.00 0.00 0.00 3.16
176 177 1.003718 GCGTGCTACTCCCCTTGTT 60.004 57.895 0.00 0.00 0.00 2.83
177 178 1.019805 GCGTGCTACTCCCCTTGTTC 61.020 60.000 0.00 0.00 0.00 3.18
178 179 0.391263 CGTGCTACTCCCCTTGTTCC 60.391 60.000 0.00 0.00 0.00 3.62
179 180 0.690762 GTGCTACTCCCCTTGTTCCA 59.309 55.000 0.00 0.00 0.00 3.53
180 181 1.073284 GTGCTACTCCCCTTGTTCCAA 59.927 52.381 0.00 0.00 0.00 3.53
181 182 1.777878 TGCTACTCCCCTTGTTCCAAA 59.222 47.619 0.00 0.00 0.00 3.28
182 183 2.175931 TGCTACTCCCCTTGTTCCAAAA 59.824 45.455 0.00 0.00 0.00 2.44
183 184 3.181423 TGCTACTCCCCTTGTTCCAAAAT 60.181 43.478 0.00 0.00 0.00 1.82
184 185 4.043561 TGCTACTCCCCTTGTTCCAAAATA 59.956 41.667 0.00 0.00 0.00 1.40
185 186 4.398358 GCTACTCCCCTTGTTCCAAAATAC 59.602 45.833 0.00 0.00 0.00 1.89
186 187 4.741928 ACTCCCCTTGTTCCAAAATACT 57.258 40.909 0.00 0.00 0.00 2.12
187 188 5.074746 ACTCCCCTTGTTCCAAAATACTT 57.925 39.130 0.00 0.00 0.00 2.24
188 189 4.832823 ACTCCCCTTGTTCCAAAATACTTG 59.167 41.667 0.00 0.00 0.00 3.16
189 190 5.068215 TCCCCTTGTTCCAAAATACTTGA 57.932 39.130 0.00 0.00 0.00 3.02
190 191 5.459505 TCCCCTTGTTCCAAAATACTTGAA 58.540 37.500 0.00 0.00 0.00 2.69
191 192 6.081356 TCCCCTTGTTCCAAAATACTTGAAT 58.919 36.000 0.00 0.00 0.00 2.57
192 193 6.014669 TCCCCTTGTTCCAAAATACTTGAATG 60.015 38.462 0.00 0.00 0.00 2.67
193 194 6.239572 CCCCTTGTTCCAAAATACTTGAATGT 60.240 38.462 0.00 0.00 0.00 2.71
194 195 6.868339 CCCTTGTTCCAAAATACTTGAATGTC 59.132 38.462 0.00 0.00 0.00 3.06
195 196 6.868339 CCTTGTTCCAAAATACTTGAATGTCC 59.132 38.462 0.00 0.00 0.00 4.02
196 197 6.339587 TGTTCCAAAATACTTGAATGTCCC 57.660 37.500 0.00 0.00 0.00 4.46
197 198 5.048364 TGTTCCAAAATACTTGAATGTCCCG 60.048 40.000 0.00 0.00 0.00 5.14
198 199 4.912586 TCCAAAATACTTGAATGTCCCGA 58.087 39.130 0.00 0.00 0.00 5.14
199 200 4.941263 TCCAAAATACTTGAATGTCCCGAG 59.059 41.667 0.00 0.00 0.00 4.63
200 201 4.438744 CCAAAATACTTGAATGTCCCGAGC 60.439 45.833 0.00 0.00 0.00 5.03
201 202 2.622064 ATACTTGAATGTCCCGAGCC 57.378 50.000 0.00 0.00 0.00 4.70
202 203 1.271856 TACTTGAATGTCCCGAGCCA 58.728 50.000 0.00 0.00 0.00 4.75
203 204 0.400213 ACTTGAATGTCCCGAGCCAA 59.600 50.000 0.00 0.00 0.00 4.52
204 205 1.089920 CTTGAATGTCCCGAGCCAAG 58.910 55.000 0.00 0.00 0.00 3.61
205 206 0.960364 TTGAATGTCCCGAGCCAAGC 60.960 55.000 0.00 0.00 0.00 4.01
206 207 1.078143 GAATGTCCCGAGCCAAGCT 60.078 57.895 0.00 0.00 43.88 3.74
207 208 0.678048 GAATGTCCCGAGCCAAGCTT 60.678 55.000 0.00 0.00 39.88 3.74
208 209 0.678048 AATGTCCCGAGCCAAGCTTC 60.678 55.000 0.00 0.00 39.88 3.86
209 210 1.557269 ATGTCCCGAGCCAAGCTTCT 61.557 55.000 0.00 0.00 39.88 2.85
210 211 1.003233 GTCCCGAGCCAAGCTTCTT 60.003 57.895 0.00 0.00 39.88 2.52
211 212 1.021920 GTCCCGAGCCAAGCTTCTTC 61.022 60.000 0.00 0.00 39.88 2.87
212 213 1.003355 CCCGAGCCAAGCTTCTTCA 60.003 57.895 0.00 0.00 39.88 3.02
213 214 0.606401 CCCGAGCCAAGCTTCTTCAA 60.606 55.000 0.00 0.00 39.88 2.69
214 215 0.801251 CCGAGCCAAGCTTCTTCAAG 59.199 55.000 0.00 0.00 39.88 3.02
215 216 1.517242 CGAGCCAAGCTTCTTCAAGT 58.483 50.000 0.00 0.00 39.88 3.16
216 217 1.876156 CGAGCCAAGCTTCTTCAAGTT 59.124 47.619 0.00 0.00 39.88 2.66
217 218 2.291741 CGAGCCAAGCTTCTTCAAGTTT 59.708 45.455 0.00 0.00 39.88 2.66
218 219 3.636381 GAGCCAAGCTTCTTCAAGTTTG 58.364 45.455 0.00 4.77 45.67 2.93
223 224 4.989279 AAGCTTCTTCAAGTTTGAGCAA 57.011 36.364 0.00 0.00 38.61 3.91
224 225 4.564940 AGCTTCTTCAAGTTTGAGCAAG 57.435 40.909 6.60 7.93 38.61 4.01
225 226 3.950395 AGCTTCTTCAAGTTTGAGCAAGT 59.050 39.130 12.62 2.96 38.61 3.16
226 227 4.036144 AGCTTCTTCAAGTTTGAGCAAGTC 59.964 41.667 12.62 7.94 38.61 3.01
227 228 4.036144 GCTTCTTCAAGTTTGAGCAAGTCT 59.964 41.667 12.62 0.00 38.61 3.24
228 229 5.490139 TTCTTCAAGTTTGAGCAAGTCTG 57.510 39.130 0.00 0.00 38.61 3.51
229 230 4.517285 TCTTCAAGTTTGAGCAAGTCTGT 58.483 39.130 0.00 0.00 38.61 3.41
230 231 5.670485 TCTTCAAGTTTGAGCAAGTCTGTA 58.330 37.500 0.00 0.00 38.61 2.74
231 232 6.112734 TCTTCAAGTTTGAGCAAGTCTGTAA 58.887 36.000 0.00 0.00 38.61 2.41
232 233 5.991328 TCAAGTTTGAGCAAGTCTGTAAG 57.009 39.130 0.00 0.00 32.50 2.34
280 281 9.956720 CACCAAATTAAATCCATTAGAGTCATC 57.043 33.333 0.00 0.00 0.00 2.92
348 1137 8.292448 ACATCAGCACTTGTTTCTATAAAGTTG 58.708 33.333 0.00 0.00 31.88 3.16
368 1157 6.993079 AGTTGGTCAAACTCAAAGAAGTTTT 58.007 32.000 0.00 0.00 46.60 2.43
370 1159 8.749354 AGTTGGTCAAACTCAAAGAAGTTTTAT 58.251 29.630 0.00 0.00 46.60 1.40
374 1163 7.096599 GGTCAAACTCAAAGAAGTTTTATTCGC 60.097 37.037 0.00 0.00 44.95 4.70
416 1205 6.490877 GTTTGACTTGATACAAACCAAACG 57.509 37.500 16.85 0.00 45.41 3.60
425 1540 0.656205 CAAACCAAACGAACGGAGCG 60.656 55.000 0.00 0.00 0.00 5.03
429 1544 1.409579 CAAACGAACGGAGCGTACG 59.590 57.895 11.84 11.84 41.75 3.67
437 1552 0.169009 ACGGAGCGTACGGTAGAAAC 59.831 55.000 21.38 7.27 38.73 2.78
471 1586 0.251634 GCCCAAAGAGGAGAGACCAG 59.748 60.000 0.00 0.00 41.22 4.00
479 1594 2.317594 AGAGGAGAGACCAGGGAAGAAT 59.682 50.000 0.00 0.00 42.04 2.40
492 1607 2.678336 GGGAAGAATAACACCGAGCAAG 59.322 50.000 0.00 0.00 0.00 4.01
559 1684 4.021981 GGGGAGAGATGGAAAACAAAACAG 60.022 45.833 0.00 0.00 0.00 3.16
561 1686 4.550422 GAGAGATGGAAAACAAAACAGGC 58.450 43.478 0.00 0.00 0.00 4.85
570 1703 0.317770 ACAAAACAGGCGAATGTGCG 60.318 50.000 0.00 0.00 32.52 5.34
788 1921 4.486503 CCCTCAGCAGCTCCAGCC 62.487 72.222 0.00 0.00 43.38 4.85
872 2009 4.760840 TGTCTGCGAGCGAGCGTC 62.761 66.667 0.00 0.00 40.67 5.19
885 2022 4.203076 GCGTCGCACGGTAGGGAT 62.203 66.667 13.44 0.00 42.82 3.85
890 2027 1.038681 TCGCACGGTAGGGATTAGCA 61.039 55.000 0.00 0.00 0.00 3.49
891 2028 0.597637 CGCACGGTAGGGATTAGCAG 60.598 60.000 0.00 0.00 0.00 4.24
893 2030 0.464036 CACGGTAGGGATTAGCAGCA 59.536 55.000 0.00 0.00 0.00 4.41
900 2044 1.825622 GGATTAGCAGCAGTGGCCC 60.826 63.158 0.00 0.00 42.56 5.80
912 2056 1.971695 GTGGCCCGGTCCAAGAAAG 60.972 63.158 5.38 0.00 37.96 2.62
913 2057 3.062466 GGCCCGGTCCAAGAAAGC 61.062 66.667 0.00 0.00 0.00 3.51
914 2058 2.282180 GCCCGGTCCAAGAAAGCA 60.282 61.111 0.00 0.00 0.00 3.91
915 2059 1.901464 GCCCGGTCCAAGAAAGCAA 60.901 57.895 0.00 0.00 0.00 3.91
916 2060 1.460273 GCCCGGTCCAAGAAAGCAAA 61.460 55.000 0.00 0.00 0.00 3.68
917 2061 1.036707 CCCGGTCCAAGAAAGCAAAA 58.963 50.000 0.00 0.00 0.00 2.44
918 2062 1.618343 CCCGGTCCAAGAAAGCAAAAT 59.382 47.619 0.00 0.00 0.00 1.82
919 2063 2.037121 CCCGGTCCAAGAAAGCAAAATT 59.963 45.455 0.00 0.00 0.00 1.82
920 2064 3.317150 CCGGTCCAAGAAAGCAAAATTC 58.683 45.455 0.00 0.00 0.00 2.17
926 2070 4.653341 TCCAAGAAAGCAAAATTCCCAAGA 59.347 37.500 0.00 0.00 0.00 3.02
929 2073 4.620982 AGAAAGCAAAATTCCCAAGAACG 58.379 39.130 0.00 0.00 33.97 3.95
935 2079 1.826385 AATTCCCAAGAACGGAGCAG 58.174 50.000 0.00 0.00 33.97 4.24
936 2080 0.678048 ATTCCCAAGAACGGAGCAGC 60.678 55.000 0.00 0.00 33.97 5.25
938 2082 3.121030 CCAAGAACGGAGCAGCGG 61.121 66.667 0.00 0.00 0.00 5.52
963 2107 3.430098 AGCACATAGCCTCGAAAAGAGAG 60.430 47.826 0.00 0.00 45.14 3.20
974 2118 5.414789 TCGAAAAGAGAGAGAGAGAGAGA 57.585 43.478 0.00 0.00 0.00 3.10
976 2120 5.186992 TCGAAAAGAGAGAGAGAGAGAGAGA 59.813 44.000 0.00 0.00 0.00 3.10
977 2121 5.521735 CGAAAAGAGAGAGAGAGAGAGAGAG 59.478 48.000 0.00 0.00 0.00 3.20
978 2122 6.627087 AAAAGAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
979 2123 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
980 2124 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
982 2126 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
983 2127 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
984 2128 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
985 2129 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
986 2130 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
987 2131 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
988 2132 4.614475 AGAGAGAGAGAGAGAGAGAGACA 58.386 47.826 0.00 0.00 0.00 3.41
990 2134 4.614475 AGAGAGAGAGAGAGAGAGACAGA 58.386 47.826 0.00 0.00 0.00 3.41
995 2148 1.933853 GAGAGAGAGAGACAGAGCGAC 59.066 57.143 0.00 0.00 0.00 5.19
997 2150 2.092968 AGAGAGAGAGACAGAGCGACAT 60.093 50.000 0.00 0.00 0.00 3.06
1120 2312 1.138661 CTCATGCACTCCTCCTCCTTC 59.861 57.143 0.00 0.00 0.00 3.46
1137 2329 5.105473 CCTCCTTCGTGTTCTTGTATAGGAA 60.105 44.000 0.00 0.00 30.72 3.36
1160 2392 7.882791 GGAACTTGGGAATTTTGATTGGTTTAT 59.117 33.333 0.00 0.00 0.00 1.40
1161 2393 9.283768 GAACTTGGGAATTTTGATTGGTTTATT 57.716 29.630 0.00 0.00 0.00 1.40
1162 2394 9.639563 AACTTGGGAATTTTGATTGGTTTATTT 57.360 25.926 0.00 0.00 0.00 1.40
1177 2409 4.445879 GGTTTATTTACTGAGCCTAGGGGG 60.446 50.000 11.72 0.00 38.36 5.40
1206 2441 6.044682 AGTTCATTTTGAAGCCTGTTTTCTG 58.955 36.000 0.00 0.00 37.00 3.02
1246 2481 3.821881 CGAGGAGTCGTATTCGGTC 57.178 57.895 0.00 0.00 41.57 4.79
1249 2484 2.475864 CGAGGAGTCGTATTCGGTCTAG 59.524 54.545 0.00 0.00 41.57 2.43
1276 2512 2.239907 GGGTCTTAAGCATGGAGTTCCT 59.760 50.000 0.00 0.00 36.82 3.36
1286 2522 4.907879 CATGGAGTTCCTTGCCTATTTC 57.092 45.455 0.00 0.00 34.93 2.17
1315 2551 7.713750 AGATAGTAGCATCAGTTAAGCGTTAA 58.286 34.615 0.00 0.00 0.00 2.01
1337 2573 0.107654 ACGCAGGTTTAGCTCCCATC 60.108 55.000 0.00 0.00 0.00 3.51
1395 2637 6.091437 AGCAGCAGTTTTTAGTACTACTACG 58.909 40.000 0.91 0.44 28.93 3.51
1428 2670 4.999311 TGTCTGAACATCATCTGGACTTTG 59.001 41.667 0.00 0.00 0.00 2.77
1440 2682 1.953686 TGGACTTTGGAAAGAAAGGCG 59.046 47.619 6.13 0.00 41.30 5.52
1616 2868 7.876068 TCACTAACAGATAAGAACCGAAACATT 59.124 33.333 0.00 0.00 0.00 2.71
1649 2908 9.883142 TTTTTGTCAAATTTTACACTTGGAGAT 57.117 25.926 4.69 0.00 0.00 2.75
1705 2965 4.447138 AAACCATGGGTGTGAACTTCTA 57.553 40.909 18.09 0.00 35.34 2.10
1721 2981 7.995289 TGAACTTCTAAATTCACAGCAAAAGA 58.005 30.769 0.00 0.00 29.89 2.52
1740 3000 3.012518 AGAATTGCAAAGGACCTCATCG 58.987 45.455 1.71 0.00 0.00 3.84
1741 3001 1.755179 ATTGCAAAGGACCTCATCGG 58.245 50.000 1.71 0.00 39.35 4.18
1751 3031 2.092914 GGACCTCATCGGGATTTTCTGT 60.093 50.000 0.00 0.00 36.97 3.41
1780 3060 1.372683 GACCTTCAGCACAGAGGCA 59.627 57.895 0.00 0.00 35.83 4.75
1875 3155 1.372623 GGTTGTGGACGTCGAGGAC 60.373 63.158 12.85 5.50 0.00 3.85
1914 3194 1.065926 TCGGCAGCAGATCAACAAGAT 60.066 47.619 0.00 0.00 40.48 2.40
1926 3206 1.471684 CAACAAGATGAAGAGCAGGGC 59.528 52.381 0.00 0.00 0.00 5.19
2139 3419 1.633852 GCCGCAAGAGCAAGAGTCTG 61.634 60.000 0.00 0.00 42.27 3.51
2142 3422 1.603931 CGCAAGAGCAAGAGTCTGTCA 60.604 52.381 0.00 0.00 42.27 3.58
2205 3485 2.060383 TGATCCTCTCTGCACCCCG 61.060 63.158 0.00 0.00 0.00 5.73
2235 3515 2.980233 GGCACGGTGCTCAGCTTT 60.980 61.111 29.92 0.00 44.28 3.51
2289 3569 6.318144 CAGAACAGATGAAGCACATAAAGGAT 59.682 38.462 0.00 0.00 39.56 3.24
2294 3574 6.203145 CAGATGAAGCACATAAAGGATCTCAG 59.797 42.308 0.00 0.00 39.56 3.35
2386 3666 2.100605 AGAGTCGAGCCAAATGAACC 57.899 50.000 0.00 0.00 0.00 3.62
2478 3758 1.462731 GGCCATTCAGTTGTGCACCA 61.463 55.000 15.69 0.00 0.00 4.17
2479 3759 0.318955 GCCATTCAGTTGTGCACCAC 60.319 55.000 15.69 14.24 34.56 4.16
2688 3968 0.171231 GCTTCCAATCCCGAAAGCAC 59.829 55.000 1.33 0.00 42.80 4.40
2697 3977 0.175989 CCCGAAAGCACCCTAGAGAC 59.824 60.000 0.00 0.00 0.00 3.36
2825 4105 1.602237 GGATCAAGGGCGACAAGGA 59.398 57.895 0.00 0.00 0.00 3.36
2952 4232 1.227943 GAACCCTGCTGCACTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
2961 4241 1.280886 CTGCACTGTCACGCTCAGTC 61.281 60.000 5.06 2.84 43.14 3.51
2970 4250 1.344438 TCACGCTCAGTCAACTTCCAT 59.656 47.619 0.00 0.00 0.00 3.41
3122 4485 9.481340 GTGTTCAACATAGCTATAATCAGATCA 57.519 33.333 5.77 3.83 0.00 2.92
3242 4605 5.596836 TGATTGGAATATTTGGCAGGAAC 57.403 39.130 0.00 0.00 0.00 3.62
3252 4615 2.193536 GGCAGGAACACCTTTGCGT 61.194 57.895 0.00 0.00 30.75 5.24
3295 4658 6.326323 TGGTAGCTGTCTGATTCCATTGTATA 59.674 38.462 0.00 0.00 0.00 1.47
3296 4659 7.147567 TGGTAGCTGTCTGATTCCATTGTATAA 60.148 37.037 0.00 0.00 0.00 0.98
3297 4660 7.171678 GGTAGCTGTCTGATTCCATTGTATAAC 59.828 40.741 0.00 0.00 0.00 1.89
3298 4661 6.653020 AGCTGTCTGATTCCATTGTATAACA 58.347 36.000 0.00 0.00 0.00 2.41
3315 4678 7.675062 TGTATAACAAACAAAAATGAGCCCAT 58.325 30.769 0.00 0.00 33.66 4.00
3338 4701 3.953612 TGCATCCTTGGAAATGTGATACC 59.046 43.478 0.00 0.00 0.00 2.73
3410 4776 6.770746 AGAATTTGCACAGATAGCAGAAAT 57.229 33.333 0.00 0.00 43.75 2.17
3612 4979 4.350368 TCTCCTTCACACATACTGCAAA 57.650 40.909 0.00 0.00 0.00 3.68
3695 5062 6.826741 CCATGCATGGTCTCATATGAATATCA 59.173 38.462 33.68 5.10 43.05 2.15
3728 5096 8.439964 TCCATGGTCATATGAATATCTCAGAA 57.560 34.615 12.58 0.00 37.52 3.02
3818 5187 2.030805 GTGTCTGAAAGTTGTGCCATCC 60.031 50.000 0.00 0.00 33.76 3.51
3819 5188 1.541588 GTCTGAAAGTTGTGCCATCCC 59.458 52.381 0.00 0.00 33.76 3.85
3883 5260 0.595095 CGGCGGGTATAGACTGGTAC 59.405 60.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.973657 TGGTTGTTCTTGTCGAGTACTC 58.026 45.455 13.18 13.18 0.00 2.59
20 21 4.395959 TTGGTTGTTCTTGTCGAGTACT 57.604 40.909 0.00 0.00 0.00 2.73
21 22 4.610680 GCATTGGTTGTTCTTGTCGAGTAC 60.611 45.833 0.00 0.00 0.00 2.73
22 23 3.496884 GCATTGGTTGTTCTTGTCGAGTA 59.503 43.478 0.00 0.00 0.00 2.59
23 24 2.290641 GCATTGGTTGTTCTTGTCGAGT 59.709 45.455 0.00 0.00 0.00 4.18
24 25 2.549754 AGCATTGGTTGTTCTTGTCGAG 59.450 45.455 0.00 0.00 0.00 4.04
25 26 2.548057 GAGCATTGGTTGTTCTTGTCGA 59.452 45.455 0.00 0.00 33.14 4.20
26 27 2.290367 TGAGCATTGGTTGTTCTTGTCG 59.710 45.455 0.00 0.00 36.59 4.35
27 28 3.988379 TGAGCATTGGTTGTTCTTGTC 57.012 42.857 0.00 0.00 36.59 3.18
28 29 4.734398 TTTGAGCATTGGTTGTTCTTGT 57.266 36.364 0.00 0.00 36.59 3.16
29 30 6.607735 AAATTTGAGCATTGGTTGTTCTTG 57.392 33.333 0.00 0.00 36.59 3.02
30 31 8.203485 TCTAAAATTTGAGCATTGGTTGTTCTT 58.797 29.630 0.00 0.00 36.59 2.52
31 32 7.725251 TCTAAAATTTGAGCATTGGTTGTTCT 58.275 30.769 0.00 0.00 36.59 3.01
32 33 7.945033 TCTAAAATTTGAGCATTGGTTGTTC 57.055 32.000 0.00 0.00 36.21 3.18
33 34 7.041848 GCTTCTAAAATTTGAGCATTGGTTGTT 60.042 33.333 0.00 0.00 0.00 2.83
34 35 6.424812 GCTTCTAAAATTTGAGCATTGGTTGT 59.575 34.615 0.00 0.00 0.00 3.32
35 36 6.128472 GGCTTCTAAAATTTGAGCATTGGTTG 60.128 38.462 14.23 0.00 0.00 3.77
36 37 5.934043 GGCTTCTAAAATTTGAGCATTGGTT 59.066 36.000 14.23 0.00 0.00 3.67
37 38 5.011943 TGGCTTCTAAAATTTGAGCATTGGT 59.988 36.000 14.23 0.00 0.00 3.67
38 39 5.481105 TGGCTTCTAAAATTTGAGCATTGG 58.519 37.500 14.23 0.00 0.00 3.16
39 40 7.605410 AATGGCTTCTAAAATTTGAGCATTG 57.395 32.000 14.23 1.26 0.00 2.82
40 41 7.879160 TGAAATGGCTTCTAAAATTTGAGCATT 59.121 29.630 14.23 8.49 34.86 3.56
41 42 7.388437 TGAAATGGCTTCTAAAATTTGAGCAT 58.612 30.769 14.23 3.98 34.86 3.79
42 43 6.757237 TGAAATGGCTTCTAAAATTTGAGCA 58.243 32.000 14.23 2.14 34.86 4.26
43 44 7.360353 GGTTGAAATGGCTTCTAAAATTTGAGC 60.360 37.037 0.00 3.15 34.86 4.26
44 45 7.656948 TGGTTGAAATGGCTTCTAAAATTTGAG 59.343 33.333 0.00 0.00 34.86 3.02
45 46 7.504403 TGGTTGAAATGGCTTCTAAAATTTGA 58.496 30.769 0.00 0.00 34.86 2.69
46 47 7.727331 TGGTTGAAATGGCTTCTAAAATTTG 57.273 32.000 0.00 0.00 34.86 2.32
47 48 8.210265 TCTTGGTTGAAATGGCTTCTAAAATTT 58.790 29.630 0.00 0.00 34.86 1.82
48 49 7.734942 TCTTGGTTGAAATGGCTTCTAAAATT 58.265 30.769 0.00 0.00 34.86 1.82
49 50 7.301868 TCTTGGTTGAAATGGCTTCTAAAAT 57.698 32.000 0.00 0.00 34.86 1.82
50 51 6.723298 TCTTGGTTGAAATGGCTTCTAAAA 57.277 33.333 0.00 0.00 34.86 1.52
51 52 6.723298 TTCTTGGTTGAAATGGCTTCTAAA 57.277 33.333 0.00 0.00 34.86 1.85
52 53 6.097554 TGTTTCTTGGTTGAAATGGCTTCTAA 59.902 34.615 0.00 0.00 38.09 2.10
53 54 5.596361 TGTTTCTTGGTTGAAATGGCTTCTA 59.404 36.000 0.00 0.00 38.09 2.10
54 55 4.405358 TGTTTCTTGGTTGAAATGGCTTCT 59.595 37.500 0.00 0.00 38.09 2.85
55 56 4.692228 TGTTTCTTGGTTGAAATGGCTTC 58.308 39.130 0.00 0.00 38.09 3.86
56 57 4.751767 TGTTTCTTGGTTGAAATGGCTT 57.248 36.364 0.00 0.00 38.09 4.35
57 58 4.634199 CATGTTTCTTGGTTGAAATGGCT 58.366 39.130 0.00 0.00 38.09 4.75
58 59 3.187022 GCATGTTTCTTGGTTGAAATGGC 59.813 43.478 0.00 0.00 38.09 4.40
59 60 4.634199 AGCATGTTTCTTGGTTGAAATGG 58.366 39.130 0.00 0.00 38.09 3.16
60 61 5.178067 GGAAGCATGTTTCTTGGTTGAAATG 59.822 40.000 19.93 0.00 38.09 2.32
61 62 5.070847 AGGAAGCATGTTTCTTGGTTGAAAT 59.929 36.000 19.93 0.00 38.09 2.17
62 63 4.405358 AGGAAGCATGTTTCTTGGTTGAAA 59.595 37.500 19.93 0.00 35.12 2.69
63 64 3.960102 AGGAAGCATGTTTCTTGGTTGAA 59.040 39.130 19.93 0.00 35.12 2.69
64 65 3.318839 CAGGAAGCATGTTTCTTGGTTGA 59.681 43.478 21.77 0.00 35.12 3.18
65 66 3.318839 TCAGGAAGCATGTTTCTTGGTTG 59.681 43.478 26.50 15.26 35.54 3.77
66 67 3.565307 TCAGGAAGCATGTTTCTTGGTT 58.435 40.909 26.50 0.00 35.54 3.67
67 68 3.228188 TCAGGAAGCATGTTTCTTGGT 57.772 42.857 26.50 7.58 35.54 3.67
68 69 4.021719 ACATTCAGGAAGCATGTTTCTTGG 60.022 41.667 26.50 16.74 35.54 3.61
69 70 5.130292 ACATTCAGGAAGCATGTTTCTTG 57.870 39.130 22.99 22.99 35.99 3.02
70 71 5.279156 GGAACATTCAGGAAGCATGTTTCTT 60.279 40.000 19.93 11.35 40.46 2.52
71 72 4.219288 GGAACATTCAGGAAGCATGTTTCT 59.781 41.667 19.93 5.54 40.46 2.52
72 73 4.219288 AGGAACATTCAGGAAGCATGTTTC 59.781 41.667 13.43 13.43 40.46 2.78
73 74 4.154942 AGGAACATTCAGGAAGCATGTTT 58.845 39.130 0.00 0.00 40.46 2.83
74 75 3.760684 GAGGAACATTCAGGAAGCATGTT 59.239 43.478 0.00 0.00 42.54 2.71
75 76 3.245016 TGAGGAACATTCAGGAAGCATGT 60.245 43.478 0.00 0.00 32.31 3.21
76 77 3.349927 TGAGGAACATTCAGGAAGCATG 58.650 45.455 0.00 0.00 0.00 4.06
77 78 3.726557 TGAGGAACATTCAGGAAGCAT 57.273 42.857 0.00 0.00 0.00 3.79
78 79 3.349927 CATGAGGAACATTCAGGAAGCA 58.650 45.455 0.00 0.00 37.07 3.91
79 80 2.098770 GCATGAGGAACATTCAGGAAGC 59.901 50.000 0.00 0.00 37.07 3.86
80 81 2.686915 GGCATGAGGAACATTCAGGAAG 59.313 50.000 0.00 0.00 37.07 3.46
81 82 2.041485 TGGCATGAGGAACATTCAGGAA 59.959 45.455 0.00 0.00 37.07 3.36
82 83 1.634973 TGGCATGAGGAACATTCAGGA 59.365 47.619 0.00 0.00 37.07 3.86
83 84 2.133281 TGGCATGAGGAACATTCAGG 57.867 50.000 0.00 0.00 37.07 3.86
84 85 3.675228 GCTTTGGCATGAGGAACATTCAG 60.675 47.826 0.00 0.00 37.07 3.02
85 86 2.231964 GCTTTGGCATGAGGAACATTCA 59.768 45.455 0.00 0.00 37.07 2.57
86 87 2.494870 AGCTTTGGCATGAGGAACATTC 59.505 45.455 0.00 0.00 41.70 2.67
87 88 2.494870 GAGCTTTGGCATGAGGAACATT 59.505 45.455 0.00 0.00 41.70 2.71
88 89 2.097825 GAGCTTTGGCATGAGGAACAT 58.902 47.619 0.00 0.00 41.70 2.71
89 90 1.538047 GAGCTTTGGCATGAGGAACA 58.462 50.000 0.00 0.00 41.70 3.18
90 91 0.813821 GGAGCTTTGGCATGAGGAAC 59.186 55.000 0.00 0.00 41.70 3.62
91 92 0.700564 AGGAGCTTTGGCATGAGGAA 59.299 50.000 0.00 0.00 41.70 3.36
92 93 1.583556 TAGGAGCTTTGGCATGAGGA 58.416 50.000 0.00 0.00 41.70 3.71
93 94 2.653234 ATAGGAGCTTTGGCATGAGG 57.347 50.000 0.00 0.00 41.70 3.86
106 107 4.157472 TGCAGAGATCGATTGCTATAGGAG 59.843 45.833 18.58 1.11 38.60 3.69
107 108 4.082125 TGCAGAGATCGATTGCTATAGGA 58.918 43.478 18.58 0.00 38.60 2.94
108 109 4.172505 GTGCAGAGATCGATTGCTATAGG 58.827 47.826 18.58 1.98 38.60 2.57
109 110 4.802999 TGTGCAGAGATCGATTGCTATAG 58.197 43.478 18.58 0.00 38.60 1.31
110 111 4.853924 TGTGCAGAGATCGATTGCTATA 57.146 40.909 18.58 5.39 38.60 1.31
111 112 3.740631 TGTGCAGAGATCGATTGCTAT 57.259 42.857 18.58 0.00 38.60 2.97
112 113 3.118992 ACTTGTGCAGAGATCGATTGCTA 60.119 43.478 18.58 7.71 38.60 3.49
113 114 2.277969 CTTGTGCAGAGATCGATTGCT 58.722 47.619 18.58 8.31 38.60 3.91
114 115 2.005451 ACTTGTGCAGAGATCGATTGC 58.995 47.619 12.60 12.60 38.30 3.56
115 116 3.519579 AGACTTGTGCAGAGATCGATTG 58.480 45.455 0.00 0.00 0.00 2.67
116 117 3.883830 AGACTTGTGCAGAGATCGATT 57.116 42.857 0.00 0.00 0.00 3.34
117 118 4.991153 TTAGACTTGTGCAGAGATCGAT 57.009 40.909 0.00 0.00 0.00 3.59
118 119 4.486090 GTTTAGACTTGTGCAGAGATCGA 58.514 43.478 4.14 0.00 0.00 3.59
119 120 3.614616 GGTTTAGACTTGTGCAGAGATCG 59.385 47.826 4.14 0.00 0.00 3.69
120 121 3.935828 GGGTTTAGACTTGTGCAGAGATC 59.064 47.826 4.14 0.00 0.00 2.75
121 122 3.617531 CGGGTTTAGACTTGTGCAGAGAT 60.618 47.826 4.14 0.00 0.00 2.75
122 123 2.288825 CGGGTTTAGACTTGTGCAGAGA 60.289 50.000 4.14 0.00 0.00 3.10
123 124 2.069273 CGGGTTTAGACTTGTGCAGAG 58.931 52.381 0.00 0.00 0.00 3.35
124 125 1.414919 ACGGGTTTAGACTTGTGCAGA 59.585 47.619 0.00 0.00 0.00 4.26
125 126 1.878953 ACGGGTTTAGACTTGTGCAG 58.121 50.000 0.00 0.00 0.00 4.41
126 127 1.944024 CAACGGGTTTAGACTTGTGCA 59.056 47.619 0.00 0.00 0.00 4.57
127 128 1.334689 GCAACGGGTTTAGACTTGTGC 60.335 52.381 0.00 0.00 0.00 4.57
128 129 1.070175 CGCAACGGGTTTAGACTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
129 130 1.223187 CGCAACGGGTTTAGACTTGT 58.777 50.000 0.00 0.00 0.00 3.16
130 131 0.515564 CCGCAACGGGTTTAGACTTG 59.484 55.000 0.00 0.00 44.15 3.16
131 132 2.922779 CCGCAACGGGTTTAGACTT 58.077 52.632 0.00 0.00 44.15 3.01
132 133 4.687464 CCGCAACGGGTTTAGACT 57.313 55.556 0.00 0.00 44.15 3.24
142 143 2.127383 GCCTCGAAAACCGCAACG 60.127 61.111 0.00 0.00 38.37 4.10
143 144 2.127383 CGCCTCGAAAACCGCAAC 60.127 61.111 0.00 0.00 38.37 4.17
144 145 2.589442 ACGCCTCGAAAACCGCAA 60.589 55.556 0.00 0.00 38.37 4.85
145 146 3.342627 CACGCCTCGAAAACCGCA 61.343 61.111 0.00 0.00 38.37 5.69
146 147 4.736631 GCACGCCTCGAAAACCGC 62.737 66.667 0.00 0.00 38.37 5.68
147 148 1.735198 TAGCACGCCTCGAAAACCG 60.735 57.895 0.00 0.00 40.25 4.44
148 149 0.669625 AGTAGCACGCCTCGAAAACC 60.670 55.000 0.00 0.00 0.00 3.27
149 150 0.714439 GAGTAGCACGCCTCGAAAAC 59.286 55.000 0.00 0.00 0.00 2.43
150 151 0.389426 GGAGTAGCACGCCTCGAAAA 60.389 55.000 2.66 0.00 35.03 2.29
151 152 1.214589 GGAGTAGCACGCCTCGAAA 59.785 57.895 2.66 0.00 35.03 3.46
152 153 2.707849 GGGAGTAGCACGCCTCGAA 61.708 63.158 8.46 0.00 38.21 3.71
153 154 3.138798 GGGAGTAGCACGCCTCGA 61.139 66.667 8.46 0.00 38.21 4.04
154 155 4.208686 GGGGAGTAGCACGCCTCG 62.209 72.222 8.46 0.00 38.21 4.63
155 156 2.760385 AGGGGAGTAGCACGCCTC 60.760 66.667 8.46 5.24 45.31 4.70
157 158 2.125106 CAAGGGGAGTAGCACGCC 60.125 66.667 0.00 0.00 37.34 5.68
158 159 1.003718 AACAAGGGGAGTAGCACGC 60.004 57.895 0.00 0.00 0.00 5.34
159 160 0.391263 GGAACAAGGGGAGTAGCACG 60.391 60.000 0.00 0.00 0.00 5.34
160 161 0.690762 TGGAACAAGGGGAGTAGCAC 59.309 55.000 0.00 0.00 31.92 4.40
161 162 3.173852 TGGAACAAGGGGAGTAGCA 57.826 52.632 0.00 0.00 31.92 3.49
173 174 5.048364 CGGGACATTCAAGTATTTTGGAACA 60.048 40.000 0.00 0.00 0.00 3.18
174 175 5.182380 TCGGGACATTCAAGTATTTTGGAAC 59.818 40.000 0.00 0.00 0.00 3.62
175 176 5.317808 TCGGGACATTCAAGTATTTTGGAA 58.682 37.500 0.00 0.00 0.00 3.53
176 177 4.912586 TCGGGACATTCAAGTATTTTGGA 58.087 39.130 0.00 0.00 0.00 3.53
177 178 4.438744 GCTCGGGACATTCAAGTATTTTGG 60.439 45.833 0.00 0.00 0.00 3.28
178 179 4.438744 GGCTCGGGACATTCAAGTATTTTG 60.439 45.833 0.00 0.00 0.00 2.44
179 180 3.694566 GGCTCGGGACATTCAAGTATTTT 59.305 43.478 0.00 0.00 0.00 1.82
180 181 3.279434 GGCTCGGGACATTCAAGTATTT 58.721 45.455 0.00 0.00 0.00 1.40
181 182 2.238646 TGGCTCGGGACATTCAAGTATT 59.761 45.455 0.00 0.00 0.00 1.89
182 183 1.837439 TGGCTCGGGACATTCAAGTAT 59.163 47.619 0.00 0.00 0.00 2.12
183 184 1.271856 TGGCTCGGGACATTCAAGTA 58.728 50.000 0.00 0.00 0.00 2.24
184 185 0.400213 TTGGCTCGGGACATTCAAGT 59.600 50.000 0.00 0.00 0.00 3.16
185 186 1.089920 CTTGGCTCGGGACATTCAAG 58.910 55.000 0.00 0.00 0.00 3.02
186 187 0.960364 GCTTGGCTCGGGACATTCAA 60.960 55.000 0.00 0.00 0.00 2.69
187 188 1.377202 GCTTGGCTCGGGACATTCA 60.377 57.895 0.00 0.00 0.00 2.57
188 189 0.678048 AAGCTTGGCTCGGGACATTC 60.678 55.000 0.00 0.00 38.25 2.67
189 190 0.678048 GAAGCTTGGCTCGGGACATT 60.678 55.000 2.10 0.00 38.25 2.71
190 191 1.078143 GAAGCTTGGCTCGGGACAT 60.078 57.895 2.10 0.00 38.25 3.06
191 192 1.768684 AAGAAGCTTGGCTCGGGACA 61.769 55.000 2.10 0.00 38.25 4.02
192 193 1.003233 AAGAAGCTTGGCTCGGGAC 60.003 57.895 2.10 0.00 38.25 4.46
193 194 1.296715 GAAGAAGCTTGGCTCGGGA 59.703 57.895 2.10 0.00 38.25 5.14
194 195 0.606401 TTGAAGAAGCTTGGCTCGGG 60.606 55.000 2.10 0.00 38.25 5.14
195 196 0.801251 CTTGAAGAAGCTTGGCTCGG 59.199 55.000 2.10 0.00 38.25 4.63
196 197 1.517242 ACTTGAAGAAGCTTGGCTCG 58.483 50.000 2.10 0.00 38.25 5.03
197 198 3.316308 TCAAACTTGAAGAAGCTTGGCTC 59.684 43.478 2.10 0.00 36.37 4.70
198 199 3.290710 TCAAACTTGAAGAAGCTTGGCT 58.709 40.909 2.10 0.00 36.37 4.75
199 200 3.636381 CTCAAACTTGAAGAAGCTTGGC 58.364 45.455 2.10 0.00 36.37 4.52
200 201 3.067180 TGCTCAAACTTGAAGAAGCTTGG 59.933 43.478 2.10 0.00 36.37 3.61
201 202 4.297299 TGCTCAAACTTGAAGAAGCTTG 57.703 40.909 2.10 0.00 36.84 4.01
202 203 4.400567 ACTTGCTCAAACTTGAAGAAGCTT 59.599 37.500 0.00 0.00 36.64 3.74
203 204 3.950395 ACTTGCTCAAACTTGAAGAAGCT 59.050 39.130 0.00 0.00 36.64 3.74
204 205 4.036144 AGACTTGCTCAAACTTGAAGAAGC 59.964 41.667 0.00 3.17 36.64 3.86
205 206 5.065731 ACAGACTTGCTCAAACTTGAAGAAG 59.934 40.000 0.00 7.89 36.64 2.85
206 207 4.943705 ACAGACTTGCTCAAACTTGAAGAA 59.056 37.500 0.00 0.00 36.64 2.52
207 208 4.517285 ACAGACTTGCTCAAACTTGAAGA 58.483 39.130 0.00 0.00 36.64 2.87
208 209 4.889832 ACAGACTTGCTCAAACTTGAAG 57.110 40.909 0.00 0.00 36.64 3.02
209 210 6.112734 TCTTACAGACTTGCTCAAACTTGAA 58.887 36.000 0.00 0.00 36.64 2.69
210 211 5.670485 TCTTACAGACTTGCTCAAACTTGA 58.330 37.500 0.00 0.00 35.57 3.02
211 212 5.991328 TCTTACAGACTTGCTCAAACTTG 57.009 39.130 0.00 0.00 0.00 3.16
212 213 7.094377 TGTTTTCTTACAGACTTGCTCAAACTT 60.094 33.333 0.00 0.00 0.00 2.66
213 214 6.374333 TGTTTTCTTACAGACTTGCTCAAACT 59.626 34.615 0.00 0.00 0.00 2.66
214 215 6.551736 TGTTTTCTTACAGACTTGCTCAAAC 58.448 36.000 0.00 0.00 0.00 2.93
215 216 6.751514 TGTTTTCTTACAGACTTGCTCAAA 57.248 33.333 0.00 0.00 0.00 2.69
216 217 6.942532 ATGTTTTCTTACAGACTTGCTCAA 57.057 33.333 0.00 0.00 0.00 3.02
217 218 6.426937 GGTATGTTTTCTTACAGACTTGCTCA 59.573 38.462 0.00 0.00 39.54 4.26
218 219 6.426937 TGGTATGTTTTCTTACAGACTTGCTC 59.573 38.462 0.00 0.00 39.54 4.26
219 220 6.296026 TGGTATGTTTTCTTACAGACTTGCT 58.704 36.000 0.00 0.00 39.54 3.91
220 221 6.554334 TGGTATGTTTTCTTACAGACTTGC 57.446 37.500 0.00 0.00 39.54 4.01
221 222 7.925993 TGTTGGTATGTTTTCTTACAGACTTG 58.074 34.615 0.00 0.00 39.54 3.16
222 223 8.691661 ATGTTGGTATGTTTTCTTACAGACTT 57.308 30.769 0.00 0.00 39.54 3.01
223 224 8.157476 AGATGTTGGTATGTTTTCTTACAGACT 58.843 33.333 0.00 0.00 39.54 3.24
224 225 8.324163 AGATGTTGGTATGTTTTCTTACAGAC 57.676 34.615 0.00 0.00 39.03 3.51
225 226 9.431887 GTAGATGTTGGTATGTTTTCTTACAGA 57.568 33.333 0.00 0.00 33.73 3.41
226 227 9.214957 TGTAGATGTTGGTATGTTTTCTTACAG 57.785 33.333 0.00 0.00 33.73 2.74
227 228 9.562408 TTGTAGATGTTGGTATGTTTTCTTACA 57.438 29.630 0.00 0.00 33.73 2.41
228 229 9.821662 GTTGTAGATGTTGGTATGTTTTCTTAC 57.178 33.333 0.00 0.00 0.00 2.34
229 230 9.562408 TGTTGTAGATGTTGGTATGTTTTCTTA 57.438 29.630 0.00 0.00 0.00 2.10
230 231 8.349983 GTGTTGTAGATGTTGGTATGTTTTCTT 58.650 33.333 0.00 0.00 0.00 2.52
231 232 7.040686 GGTGTTGTAGATGTTGGTATGTTTTCT 60.041 37.037 0.00 0.00 0.00 2.52
232 233 7.081976 GGTGTTGTAGATGTTGGTATGTTTTC 58.918 38.462 0.00 0.00 0.00 2.29
323 1112 7.752239 CCAACTTTATAGAAACAAGTGCTGATG 59.248 37.037 0.00 0.00 31.00 3.07
326 1115 6.970484 ACCAACTTTATAGAAACAAGTGCTG 58.030 36.000 0.00 0.00 31.00 4.41
328 1117 6.966021 TGACCAACTTTATAGAAACAAGTGC 58.034 36.000 0.00 0.00 31.00 4.40
331 1120 9.665264 GAGTTTGACCAACTTTATAGAAACAAG 57.335 33.333 0.00 0.00 46.53 3.16
348 1137 7.096599 GCGAATAAAACTTCTTTGAGTTTGACC 60.097 37.037 4.01 0.00 46.23 4.02
416 1205 0.447801 TTCTACCGTACGCTCCGTTC 59.552 55.000 10.49 0.00 41.54 3.95
425 1540 1.717645 CGTGTGCAGTTTCTACCGTAC 59.282 52.381 0.00 0.00 0.00 3.67
471 1586 2.396590 TGCTCGGTGTTATTCTTCCC 57.603 50.000 0.00 0.00 0.00 3.97
536 1656 3.895041 TGTTTTGTTTTCCATCTCTCCCC 59.105 43.478 0.00 0.00 0.00 4.81
537 1657 4.021981 CCTGTTTTGTTTTCCATCTCTCCC 60.022 45.833 0.00 0.00 0.00 4.30
542 1667 2.955660 TCGCCTGTTTTGTTTTCCATCT 59.044 40.909 0.00 0.00 0.00 2.90
729 1862 4.454847 GTCCGGTTTTAAGGAGGAAGAAAG 59.545 45.833 0.00 0.00 37.18 2.62
805 1938 0.114168 CGATGGAGGGAGGGAGAGAT 59.886 60.000 0.00 0.00 0.00 2.75
806 1939 1.539165 CGATGGAGGGAGGGAGAGA 59.461 63.158 0.00 0.00 0.00 3.10
807 1940 2.206536 GCGATGGAGGGAGGGAGAG 61.207 68.421 0.00 0.00 0.00 3.20
808 1941 2.123251 GCGATGGAGGGAGGGAGA 60.123 66.667 0.00 0.00 0.00 3.71
809 1942 3.610669 CGCGATGGAGGGAGGGAG 61.611 72.222 0.00 0.00 0.00 4.30
814 1947 2.523168 TATGGCGCGATGGAGGGA 60.523 61.111 15.78 0.00 0.00 4.20
815 1948 2.357517 GTATGGCGCGATGGAGGG 60.358 66.667 15.78 0.00 0.00 4.30
816 1949 2.357517 GGTATGGCGCGATGGAGG 60.358 66.667 15.78 0.00 0.00 4.30
817 1950 1.373497 GAGGTATGGCGCGATGGAG 60.373 63.158 15.78 0.00 0.00 3.86
818 1951 2.734591 GAGGTATGGCGCGATGGA 59.265 61.111 15.78 0.00 0.00 3.41
819 1952 2.734723 CGAGGTATGGCGCGATGG 60.735 66.667 15.78 0.00 0.00 3.51
820 1953 3.406361 GCGAGGTATGGCGCGATG 61.406 66.667 15.78 0.00 43.96 3.84
872 2009 0.597637 CTGCTAATCCCTACCGTGCG 60.598 60.000 0.00 0.00 0.00 5.34
885 2022 4.408821 CCGGGCCACTGCTGCTAA 62.409 66.667 4.39 0.00 37.74 3.09
893 2030 2.411765 CTTTCTTGGACCGGGCCACT 62.412 60.000 34.54 0.00 37.75 4.00
900 2044 3.317150 GGAATTTTGCTTTCTTGGACCG 58.683 45.455 0.00 0.00 0.00 4.79
912 2056 2.926586 GCTCCGTTCTTGGGAATTTTGC 60.927 50.000 0.00 0.00 33.71 3.68
913 2057 2.295909 TGCTCCGTTCTTGGGAATTTTG 59.704 45.455 0.00 0.00 33.71 2.44
914 2058 2.558359 CTGCTCCGTTCTTGGGAATTTT 59.442 45.455 0.00 0.00 33.71 1.82
915 2059 2.162681 CTGCTCCGTTCTTGGGAATTT 58.837 47.619 0.00 0.00 33.71 1.82
916 2060 1.826385 CTGCTCCGTTCTTGGGAATT 58.174 50.000 0.00 0.00 33.71 2.17
917 2061 0.678048 GCTGCTCCGTTCTTGGGAAT 60.678 55.000 0.00 0.00 33.71 3.01
918 2062 1.302511 GCTGCTCCGTTCTTGGGAA 60.303 57.895 0.00 0.00 32.02 3.97
919 2063 2.347490 GCTGCTCCGTTCTTGGGA 59.653 61.111 0.00 0.00 0.00 4.37
920 2064 3.121030 CGCTGCTCCGTTCTTGGG 61.121 66.667 0.00 0.00 0.00 4.12
935 2079 3.816367 GAGGCTATGTGCTCCCCGC 62.816 68.421 0.00 0.00 42.39 6.13
936 2080 2.423446 GAGGCTATGTGCTCCCCG 59.577 66.667 0.00 0.00 42.39 5.73
938 2082 0.178068 TTTCGAGGCTATGTGCTCCC 59.822 55.000 0.00 0.00 42.39 4.30
947 2091 4.080807 TCTCTCTCTCTCTTTTCGAGGCTA 60.081 45.833 0.00 0.00 40.30 3.93
956 2100 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
957 2101 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
959 2103 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
960 2104 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
963 2107 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
967 2111 4.646945 TCTGTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
969 2113 4.739137 GCTCTGTCTCTCTCTCTCTCTCTC 60.739 54.167 0.00 0.00 0.00 3.20
974 2118 1.831106 TCGCTCTGTCTCTCTCTCTCT 59.169 52.381 0.00 0.00 0.00 3.10
976 2120 1.277842 TGTCGCTCTGTCTCTCTCTCT 59.722 52.381 0.00 0.00 0.00 3.10
977 2121 1.732941 TGTCGCTCTGTCTCTCTCTC 58.267 55.000 0.00 0.00 0.00 3.20
978 2122 2.418368 ATGTCGCTCTGTCTCTCTCT 57.582 50.000 0.00 0.00 0.00 3.10
979 2123 3.462982 TCTATGTCGCTCTGTCTCTCTC 58.537 50.000 0.00 0.00 0.00 3.20
980 2124 3.552132 TCTATGTCGCTCTGTCTCTCT 57.448 47.619 0.00 0.00 0.00 3.10
982 2126 2.884012 CCATCTATGTCGCTCTGTCTCT 59.116 50.000 0.00 0.00 0.00 3.10
983 2127 2.030363 CCCATCTATGTCGCTCTGTCTC 60.030 54.545 0.00 0.00 0.00 3.36
984 2128 1.959985 CCCATCTATGTCGCTCTGTCT 59.040 52.381 0.00 0.00 0.00 3.41
985 2129 1.000283 CCCCATCTATGTCGCTCTGTC 60.000 57.143 0.00 0.00 0.00 3.51
986 2130 1.043816 CCCCATCTATGTCGCTCTGT 58.956 55.000 0.00 0.00 0.00 3.41
987 2131 0.320247 GCCCCATCTATGTCGCTCTG 60.320 60.000 0.00 0.00 0.00 3.35
988 2132 0.760567 TGCCCCATCTATGTCGCTCT 60.761 55.000 0.00 0.00 0.00 4.09
990 2134 1.750930 CTGCCCCATCTATGTCGCT 59.249 57.895 0.00 0.00 0.00 4.93
995 2148 0.036448 CCTGAGCTGCCCCATCTATG 59.964 60.000 0.00 0.00 0.00 2.23
997 2150 1.767672 CCCTGAGCTGCCCCATCTA 60.768 63.158 0.00 0.00 0.00 1.98
1120 2312 4.630069 CCCAAGTTCCTATACAAGAACACG 59.370 45.833 5.76 0.00 43.89 4.49
1177 2409 4.202253 ACAGGCTTCAAAATGAACTTTCCC 60.202 41.667 0.00 0.00 32.21 3.97
1178 2410 4.948847 ACAGGCTTCAAAATGAACTTTCC 58.051 39.130 0.00 0.00 32.21 3.13
1179 2411 6.908870 AAACAGGCTTCAAAATGAACTTTC 57.091 33.333 0.00 0.00 32.21 2.62
1184 2416 5.811613 CACAGAAAACAGGCTTCAAAATGAA 59.188 36.000 0.00 0.00 34.79 2.57
1186 2418 4.508861 CCACAGAAAACAGGCTTCAAAATG 59.491 41.667 0.00 0.00 0.00 2.32
1187 2419 4.696455 CCACAGAAAACAGGCTTCAAAAT 58.304 39.130 0.00 0.00 0.00 1.82
1206 2441 2.165030 CCATGATCAACTCCAAAGCCAC 59.835 50.000 0.00 0.00 0.00 5.01
1242 2477 1.390565 AAGACCCGATGACTAGACCG 58.609 55.000 0.00 0.00 0.00 4.79
1246 2481 4.302455 CATGCTTAAGACCCGATGACTAG 58.698 47.826 6.67 0.00 0.00 2.57
1249 2484 2.158957 TCCATGCTTAAGACCCGATGAC 60.159 50.000 6.67 0.00 0.00 3.06
1276 2512 4.021368 GCTACTATCTCCCGAAATAGGCAA 60.021 45.833 0.00 0.00 31.11 4.52
1286 2522 5.704888 CTTAACTGATGCTACTATCTCCCG 58.295 45.833 0.00 0.00 0.00 5.14
1315 2551 1.376037 GGAGCTAAACCTGCGTGCT 60.376 57.895 0.00 0.00 36.63 4.40
1319 2555 0.107703 TGATGGGAGCTAAACCTGCG 60.108 55.000 0.00 0.00 35.28 5.18
1337 2573 3.240069 CAAAGGCGAAATTCTCTTGCTG 58.760 45.455 0.00 0.00 0.00 4.41
1395 2637 7.222417 CAGATGATGTTCAGACAACTAGATCAC 59.778 40.741 0.00 0.00 39.66 3.06
1428 2670 4.966005 GCCAACGCCTTTCTTTCC 57.034 55.556 0.00 0.00 0.00 3.13
1440 2682 2.163613 CGACCCATTAAAAGAGGCCAAC 59.836 50.000 5.01 0.00 0.00 3.77
1456 2698 2.759519 GAAGCACGCGAAAACGACCC 62.760 60.000 15.93 0.00 36.70 4.46
1623 2875 9.883142 ATCTCCAAGTGTAAAATTTGACAAAAA 57.117 25.926 10.07 0.00 0.00 1.94
1684 2943 3.312736 AGAAGTTCACACCCATGGTTT 57.687 42.857 11.73 0.00 31.02 3.27
1705 2965 6.680874 TTGCAATTCTTTTGCTGTGAATTT 57.319 29.167 11.18 0.00 45.13 1.82
1714 2974 3.732212 AGGTCCTTTGCAATTCTTTTGC 58.268 40.909 0.00 3.44 45.11 3.68
1720 2980 2.098117 CCGATGAGGTCCTTTGCAATTC 59.902 50.000 0.00 0.00 34.51 2.17
1721 2981 2.094675 CCGATGAGGTCCTTTGCAATT 58.905 47.619 0.00 0.00 34.51 2.32
1733 2993 4.708177 ACATACAGAAAATCCCGATGAGG 58.292 43.478 0.00 0.00 40.63 3.86
1751 3031 4.041075 TGTGCTGAAGGTCCTGTAAACATA 59.959 41.667 0.00 0.00 0.00 2.29
1800 3080 0.171231 GGGCGATTTCTTGCACCTTC 59.829 55.000 0.00 0.00 32.95 3.46
1875 3155 2.045045 TTCTTGGCAGCGGATGGG 60.045 61.111 0.00 0.00 0.00 4.00
1914 3194 2.343758 GTGTCGCCCTGCTCTTCA 59.656 61.111 0.00 0.00 0.00 3.02
1926 3206 2.355363 TTCTGGTTCGCCGTGTCG 60.355 61.111 0.00 0.00 41.18 4.35
1935 3215 3.007398 TCTTGAGCTTCTCCTTCTGGTTC 59.993 47.826 0.00 0.00 34.23 3.62
1989 3269 0.892358 ACTTGGTGTCCATGCTGCTG 60.892 55.000 0.00 0.00 32.73 4.41
2139 3419 3.959991 GAAGTGGGAGGCGGCTGAC 62.960 68.421 19.63 10.37 0.00 3.51
2205 3485 2.719354 GTGCCGTTGGTGTTGACC 59.281 61.111 0.00 0.00 43.48 4.02
2235 3515 4.451150 GTGGACGCATCGGAGCCA 62.451 66.667 0.00 0.00 0.00 4.75
2386 3666 1.515020 CTGCAACTCTCTCCCTCGG 59.485 63.158 0.00 0.00 0.00 4.63
2478 3758 0.552615 AGGGGAAATAGGCAGGTGGT 60.553 55.000 0.00 0.00 0.00 4.16
2479 3759 0.183731 GAGGGGAAATAGGCAGGTGG 59.816 60.000 0.00 0.00 0.00 4.61
2688 3968 1.133761 TCCTCATCACCGTCTCTAGGG 60.134 57.143 0.00 0.00 36.67 3.53
2697 3977 3.384789 TGGTATCTCTTTCCTCATCACCG 59.615 47.826 0.00 0.00 0.00 4.94
2751 4031 2.501261 TCTACGTCATCGATCCGGATT 58.499 47.619 20.22 0.00 40.62 3.01
2825 4105 2.091994 CCTTTGCCATCATCCTTCTCCT 60.092 50.000 0.00 0.00 0.00 3.69
2940 4220 2.662857 GAGCGTGACAGTGCAGCA 60.663 61.111 0.00 0.00 0.00 4.41
2952 4232 1.344438 TCATGGAAGTTGACTGAGCGT 59.656 47.619 0.00 0.00 0.00 5.07
2961 4241 4.571580 GCTCAAGATCTCTCATGGAAGTTG 59.428 45.833 0.00 0.00 0.00 3.16
2970 4250 3.132467 CAGATGGTGCTCAAGATCTCTCA 59.868 47.826 0.00 0.00 0.00 3.27
3122 4485 7.833183 AGTTACCTAGTACAGCTACAGTTACAT 59.167 37.037 0.00 0.00 0.00 2.29
3242 4605 0.447801 GGTGCTATCACGCAAAGGTG 59.552 55.000 0.00 0.00 44.03 4.00
3252 4615 3.417101 ACCAATTGTTTCGGTGCTATCA 58.583 40.909 4.43 0.00 0.00 2.15
3295 4658 4.036616 GCAATGGGCTCATTTTTGTTTGTT 59.963 37.500 9.73 0.00 41.29 2.83
3296 4659 3.565063 GCAATGGGCTCATTTTTGTTTGT 59.435 39.130 9.73 0.00 41.29 2.83
3297 4660 3.564644 TGCAATGGGCTCATTTTTGTTTG 59.435 39.130 9.73 0.00 41.29 2.93
3298 4661 3.818180 TGCAATGGGCTCATTTTTGTTT 58.182 36.364 9.73 0.00 41.29 2.83
3315 4678 4.402155 GGTATCACATTTCCAAGGATGCAA 59.598 41.667 0.00 0.00 0.00 4.08
3338 4701 3.211865 ACAAGCTGGAGATATGCACATG 58.788 45.455 0.00 0.00 0.00 3.21
3384 4748 7.870509 TTCTGCTATCTGTGCAAATTCTTAT 57.129 32.000 0.00 0.00 40.13 1.73
3612 4979 4.469657 TGGTTTTCTTTATGCAGGACAGT 58.530 39.130 0.00 0.00 0.00 3.55
3704 5072 7.280428 GCTTCTGAGATATTCATATGACCATGG 59.720 40.741 11.19 11.19 34.68 3.66
3728 5096 8.773404 AAAATGTTGATCTACTTAAGTACGCT 57.227 30.769 11.38 0.00 0.00 5.07
3737 5105 9.466497 ACCACATGATAAAATGTTGATCTACTT 57.534 29.630 8.74 0.00 38.75 2.24
3762 5130 5.105310 TCAGCTCCTGATGTTACTTCCTTAC 60.105 44.000 0.00 0.00 35.39 2.34
3818 5187 4.389374 ACTACCAGTGTCTTTGTTGATGG 58.611 43.478 0.00 0.00 0.00 3.51
3819 5188 4.452455 GGACTACCAGTGTCTTTGTTGATG 59.548 45.833 0.00 0.00 35.04 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.