Multiple sequence alignment - TraesCS4A01G017500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G017500 chr4A 100.000 3090 0 0 1 3090 11705010 11708099 0.000000e+00 5707.0
1 TraesCS4A01G017500 chr4A 91.474 821 60 4 1449 2260 319831736 319830917 0.000000e+00 1120.0
2 TraesCS4A01G017500 chr4A 89.744 624 34 14 586 1207 28272559 28273154 0.000000e+00 771.0
3 TraesCS4A01G017500 chr4A 94.776 134 7 0 412 545 381219943 381219810 3.120000e-50 209.0
4 TraesCS4A01G017500 chr6A 96.310 2683 58 18 412 3090 233812389 233815034 0.000000e+00 4368.0
5 TraesCS4A01G017500 chr6A 95.489 133 5 1 413 545 610384081 610383950 8.680000e-51 211.0
6 TraesCS4A01G017500 chr2B 92.953 2597 92 22 508 3089 621182126 621184646 0.000000e+00 3698.0
7 TraesCS4A01G017500 chr7D 97.842 1668 31 3 1424 3089 66988406 66986742 0.000000e+00 2876.0
8 TraesCS4A01G017500 chr7D 98.048 461 9 0 841 1301 66989312 66988852 0.000000e+00 802.0
9 TraesCS4A01G017500 chr7D 92.892 408 15 4 413 817 66989677 66989281 5.740000e-162 580.0
10 TraesCS4A01G017500 chr4B 90.049 1638 147 10 1449 3074 550673906 550675539 0.000000e+00 2108.0
11 TraesCS4A01G017500 chr4B 91.217 1537 121 8 1449 2975 16551846 16553378 0.000000e+00 2078.0
12 TraesCS4A01G017500 chr4B 94.118 221 10 2 413 631 104746182 104745963 1.780000e-87 333.0
13 TraesCS4A01G017500 chr4B 82.400 375 44 11 1 359 570103946 570103578 1.080000e-79 307.0
14 TraesCS4A01G017500 chr4B 87.037 54 6 1 355 408 91567946 91567894 3.330000e-05 60.2
15 TraesCS4A01G017500 chr7A 89.872 1639 145 14 1449 3072 228677161 228675529 0.000000e+00 2087.0
16 TraesCS4A01G017500 chr7A 90.987 821 64 4 1449 2260 439798394 439797575 0.000000e+00 1098.0
17 TraesCS4A01G017500 chr7A 95.489 133 6 0 413 545 520797407 520797275 2.410000e-51 213.0
18 TraesCS4A01G017500 chr3B 91.152 1537 122 8 1449 2975 511031358 511029826 0.000000e+00 2073.0
19 TraesCS4A01G017500 chr3B 90.909 748 37 13 461 1207 395846863 395846146 0.000000e+00 976.0
20 TraesCS4A01G017500 chr3B 91.837 49 4 0 356 404 557519718 557519766 5.530000e-08 69.4
21 TraesCS4A01G017500 chr2A 96.388 1246 40 5 1848 3090 642960941 642959698 0.000000e+00 2047.0
22 TraesCS4A01G017500 chr2A 95.464 463 21 0 831 1293 642962115 642961653 0.000000e+00 739.0
23 TraesCS4A01G017500 chr2A 93.047 489 17 4 1333 1804 642961430 642960942 0.000000e+00 699.0
24 TraesCS4A01G017500 chr2A 90.881 329 24 5 412 739 642962444 642962121 1.320000e-118 436.0
25 TraesCS4A01G017500 chr1A 95.608 1275 29 7 1312 2561 121881034 121879762 0.000000e+00 2019.0
26 TraesCS4A01G017500 chr1A 91.202 466 35 6 832 1293 121881818 121881355 2.020000e-176 628.0
27 TraesCS4A01G017500 chr1A 92.414 290 18 3 451 739 121882111 121881825 7.970000e-111 411.0
28 TraesCS4A01G017500 chr7B 93.578 872 53 3 2220 3090 725790700 725791569 0.000000e+00 1297.0
29 TraesCS4A01G017500 chr7B 95.939 394 16 0 814 1207 553229368 553229761 9.340000e-180 640.0
30 TraesCS4A01G017500 chrUn 89.263 624 37 15 586 1207 391724490 391725085 0.000000e+00 754.0
31 TraesCS4A01G017500 chr4D 86.010 386 24 8 1 359 455910372 455909990 1.340000e-103 387.0
32 TraesCS4A01G017500 chr5A 96.970 132 4 0 414 545 554337233 554337364 4.010000e-54 222.0
33 TraesCS4A01G017500 chr5A 91.379 58 5 0 349 406 489912698 489912755 2.550000e-11 80.5
34 TraesCS4A01G017500 chr3A 90.566 53 3 2 346 396 699473731 699473679 5.530000e-08 69.4
35 TraesCS4A01G017500 chr2D 96.875 32 0 1 351 382 74984677 74984707 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G017500 chr4A 11705010 11708099 3089 False 5707.000000 5707 100.000000 1 3090 1 chr4A.!!$F1 3089
1 TraesCS4A01G017500 chr4A 319830917 319831736 819 True 1120.000000 1120 91.474000 1449 2260 1 chr4A.!!$R1 811
2 TraesCS4A01G017500 chr4A 28272559 28273154 595 False 771.000000 771 89.744000 586 1207 1 chr4A.!!$F2 621
3 TraesCS4A01G017500 chr6A 233812389 233815034 2645 False 4368.000000 4368 96.310000 412 3090 1 chr6A.!!$F1 2678
4 TraesCS4A01G017500 chr2B 621182126 621184646 2520 False 3698.000000 3698 92.953000 508 3089 1 chr2B.!!$F1 2581
5 TraesCS4A01G017500 chr7D 66986742 66989677 2935 True 1419.333333 2876 96.260667 413 3089 3 chr7D.!!$R1 2676
6 TraesCS4A01G017500 chr4B 550673906 550675539 1633 False 2108.000000 2108 90.049000 1449 3074 1 chr4B.!!$F2 1625
7 TraesCS4A01G017500 chr4B 16551846 16553378 1532 False 2078.000000 2078 91.217000 1449 2975 1 chr4B.!!$F1 1526
8 TraesCS4A01G017500 chr7A 228675529 228677161 1632 True 2087.000000 2087 89.872000 1449 3072 1 chr7A.!!$R1 1623
9 TraesCS4A01G017500 chr7A 439797575 439798394 819 True 1098.000000 1098 90.987000 1449 2260 1 chr7A.!!$R2 811
10 TraesCS4A01G017500 chr3B 511029826 511031358 1532 True 2073.000000 2073 91.152000 1449 2975 1 chr3B.!!$R2 1526
11 TraesCS4A01G017500 chr3B 395846146 395846863 717 True 976.000000 976 90.909000 461 1207 1 chr3B.!!$R1 746
12 TraesCS4A01G017500 chr2A 642959698 642962444 2746 True 980.250000 2047 93.945000 412 3090 4 chr2A.!!$R1 2678
13 TraesCS4A01G017500 chr1A 121879762 121882111 2349 True 1019.333333 2019 93.074667 451 2561 3 chr1A.!!$R1 2110
14 TraesCS4A01G017500 chr7B 725790700 725791569 869 False 1297.000000 1297 93.578000 2220 3090 1 chr7B.!!$F2 870
15 TraesCS4A01G017500 chrUn 391724490 391725085 595 False 754.000000 754 89.263000 586 1207 1 chrUn.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.034089 ATGCCTGTGCTCCTTAACCC 60.034 55.000 0.0 0.0 38.71 4.11 F
283 284 0.323629 CCTGTGCTCCTTAACCCGAA 59.676 55.000 0.0 0.0 0.00 4.30 F
287 288 1.001633 GTGCTCCTTAACCCGAAGTGA 59.998 52.381 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1786 3.127548 GCAAACACTGTGTCATGATAGGG 59.872 47.826 23.01 1.88 0.0 3.53 R
1614 2009 3.892284 ACACACACATCCAAAACACCTA 58.108 40.909 0.00 0.00 0.0 3.08 R
2336 2749 8.196771 AGCAAACAAGAAAATGACATCTAAACA 58.803 29.630 0.00 0.00 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.601243 CTCGACGCTATGATTTTTAATTTGTT 57.399 30.769 0.00 0.00 0.00 2.83
26 27 8.595781 TCGACGCTATGATTTTTAATTTGTTC 57.404 30.769 0.00 0.00 0.00 3.18
27 28 8.231161 TCGACGCTATGATTTTTAATTTGTTCA 58.769 29.630 0.00 0.00 0.00 3.18
28 29 9.009327 CGACGCTATGATTTTTAATTTGTTCAT 57.991 29.630 0.00 0.00 0.00 2.57
38 39 9.783081 ATTTTTAATTTGTTCATTCTTCCTGCT 57.217 25.926 0.00 0.00 0.00 4.24
39 40 8.816640 TTTTAATTTGTTCATTCTTCCTGCTC 57.183 30.769 0.00 0.00 0.00 4.26
40 41 7.523293 TTAATTTGTTCATTCTTCCTGCTCA 57.477 32.000 0.00 0.00 0.00 4.26
41 42 4.836125 TTTGTTCATTCTTCCTGCTCAC 57.164 40.909 0.00 0.00 0.00 3.51
42 43 2.416747 TGTTCATTCTTCCTGCTCACG 58.583 47.619 0.00 0.00 0.00 4.35
43 44 2.224281 TGTTCATTCTTCCTGCTCACGT 60.224 45.455 0.00 0.00 0.00 4.49
44 45 2.808543 GTTCATTCTTCCTGCTCACGTT 59.191 45.455 0.00 0.00 0.00 3.99
45 46 2.416747 TCATTCTTCCTGCTCACGTTG 58.583 47.619 0.00 0.00 0.00 4.10
46 47 2.037121 TCATTCTTCCTGCTCACGTTGA 59.963 45.455 0.00 0.00 0.00 3.18
47 48 2.839486 TTCTTCCTGCTCACGTTGAT 57.161 45.000 0.00 0.00 0.00 2.57
48 49 3.953712 TTCTTCCTGCTCACGTTGATA 57.046 42.857 0.00 0.00 0.00 2.15
49 50 3.953712 TCTTCCTGCTCACGTTGATAA 57.046 42.857 0.00 0.00 0.00 1.75
50 51 3.585862 TCTTCCTGCTCACGTTGATAAC 58.414 45.455 0.00 0.00 0.00 1.89
51 52 3.258372 TCTTCCTGCTCACGTTGATAACT 59.742 43.478 0.00 0.00 0.00 2.24
52 53 2.959516 TCCTGCTCACGTTGATAACTG 58.040 47.619 0.00 0.00 0.00 3.16
53 54 2.002586 CCTGCTCACGTTGATAACTGG 58.997 52.381 0.00 0.00 0.00 4.00
54 55 2.353704 CCTGCTCACGTTGATAACTGGA 60.354 50.000 0.00 0.00 0.00 3.86
55 56 3.525537 CTGCTCACGTTGATAACTGGAT 58.474 45.455 0.00 0.00 0.00 3.41
56 57 3.521560 TGCTCACGTTGATAACTGGATC 58.478 45.455 0.00 0.00 0.00 3.36
57 58 2.535984 GCTCACGTTGATAACTGGATCG 59.464 50.000 0.00 0.00 0.00 3.69
58 59 3.116300 CTCACGTTGATAACTGGATCGG 58.884 50.000 0.00 0.00 0.00 4.18
59 60 2.494471 TCACGTTGATAACTGGATCGGT 59.506 45.455 0.00 0.00 0.00 4.69
60 61 3.056393 TCACGTTGATAACTGGATCGGTT 60.056 43.478 7.62 7.62 36.81 4.44
61 62 3.306166 CACGTTGATAACTGGATCGGTTC 59.694 47.826 6.06 0.00 34.54 3.62
62 63 3.194968 ACGTTGATAACTGGATCGGTTCT 59.805 43.478 6.06 0.00 34.54 3.01
63 64 4.181578 CGTTGATAACTGGATCGGTTCTT 58.818 43.478 6.06 0.00 34.54 2.52
64 65 4.032900 CGTTGATAACTGGATCGGTTCTTG 59.967 45.833 6.06 0.00 34.54 3.02
65 66 3.531538 TGATAACTGGATCGGTTCTTGC 58.468 45.455 6.06 0.00 34.54 4.01
66 67 2.004583 TAACTGGATCGGTTCTTGCG 57.995 50.000 6.06 0.00 34.54 4.85
67 68 0.034896 AACTGGATCGGTTCTTGCGT 59.965 50.000 0.00 0.00 0.00 5.24
68 69 0.670546 ACTGGATCGGTTCTTGCGTG 60.671 55.000 0.00 0.00 0.00 5.34
69 70 1.970917 CTGGATCGGTTCTTGCGTGC 61.971 60.000 0.00 0.00 0.00 5.34
70 71 2.750888 GGATCGGTTCTTGCGTGCC 61.751 63.158 0.00 0.00 0.00 5.01
71 72 3.083600 GATCGGTTCTTGCGTGCCG 62.084 63.158 0.00 0.00 44.95 5.69
78 79 4.101790 CTTGCGTGCCGGCGAATT 62.102 61.111 23.90 0.00 35.06 2.17
79 80 4.096558 TTGCGTGCCGGCGAATTC 62.097 61.111 23.90 9.45 35.06 2.17
81 82 3.876198 GCGTGCCGGCGAATTCAT 61.876 61.111 23.90 0.00 0.00 2.57
82 83 2.791256 CGTGCCGGCGAATTCATT 59.209 55.556 23.90 0.00 0.00 2.57
83 84 1.583451 CGTGCCGGCGAATTCATTG 60.583 57.895 23.90 0.00 0.00 2.82
84 85 1.800032 GTGCCGGCGAATTCATTGA 59.200 52.632 23.90 0.00 0.00 2.57
85 86 0.170116 GTGCCGGCGAATTCATTGAA 59.830 50.000 23.90 0.75 0.00 2.69
86 87 0.884514 TGCCGGCGAATTCATTGAAA 59.115 45.000 23.90 0.00 0.00 2.69
87 88 1.476085 TGCCGGCGAATTCATTGAAAT 59.524 42.857 23.90 0.00 0.00 2.17
88 89 2.119457 GCCGGCGAATTCATTGAAATC 58.881 47.619 12.58 3.79 0.00 2.17
89 90 2.479389 GCCGGCGAATTCATTGAAATCA 60.479 45.455 12.58 0.00 0.00 2.57
90 91 3.768406 CCGGCGAATTCATTGAAATCAA 58.232 40.909 9.30 0.00 40.51 2.57
91 92 4.172505 CCGGCGAATTCATTGAAATCAAA 58.827 39.130 9.30 0.00 39.55 2.69
92 93 4.805192 CCGGCGAATTCATTGAAATCAAAT 59.195 37.500 9.30 0.00 39.55 2.32
93 94 5.291614 CCGGCGAATTCATTGAAATCAAATT 59.708 36.000 9.30 0.00 39.55 1.82
94 95 6.183360 CCGGCGAATTCATTGAAATCAAATTT 60.183 34.615 9.30 0.00 39.55 1.82
95 96 6.679500 CGGCGAATTCATTGAAATCAAATTTG 59.320 34.615 12.15 12.15 39.55 2.32
96 97 6.962678 GGCGAATTCATTGAAATCAAATTTGG 59.037 34.615 17.90 0.00 39.55 3.28
97 98 6.466730 GCGAATTCATTGAAATCAAATTTGGC 59.533 34.615 17.90 6.59 39.55 4.52
98 99 6.679500 CGAATTCATTGAAATCAAATTTGGCG 59.320 34.615 17.90 0.00 39.55 5.69
99 100 4.925061 TCATTGAAATCAAATTTGGCGC 57.075 36.364 17.90 0.00 39.55 6.53
100 101 3.683822 TCATTGAAATCAAATTTGGCGCC 59.316 39.130 22.73 22.73 39.55 6.53
101 102 2.827800 TGAAATCAAATTTGGCGCCA 57.172 40.000 29.03 29.03 31.47 5.69
102 103 3.331478 TGAAATCAAATTTGGCGCCAT 57.669 38.095 33.25 14.69 31.47 4.40
103 104 3.001414 TGAAATCAAATTTGGCGCCATG 58.999 40.909 33.25 25.47 31.47 3.66
104 105 1.371595 AATCAAATTTGGCGCCATGC 58.628 45.000 33.25 1.08 45.38 4.06
105 106 0.538118 ATCAAATTTGGCGCCATGCT 59.462 45.000 33.25 14.58 45.43 3.79
106 107 1.180907 TCAAATTTGGCGCCATGCTA 58.819 45.000 33.25 13.29 45.43 3.49
107 108 1.547820 TCAAATTTGGCGCCATGCTAA 59.452 42.857 33.25 22.38 42.92 3.09
110 111 3.283303 TTGGCGCCATGCTAAACC 58.717 55.556 33.25 0.00 41.53 3.27
111 112 1.604879 TTGGCGCCATGCTAAACCA 60.605 52.632 33.25 9.15 41.53 3.67
112 113 1.594194 TTGGCGCCATGCTAAACCAG 61.594 55.000 33.25 0.00 41.53 4.00
113 114 1.748879 GGCGCCATGCTAAACCAGA 60.749 57.895 24.80 0.00 45.43 3.86
114 115 1.312371 GGCGCCATGCTAAACCAGAA 61.312 55.000 24.80 0.00 45.43 3.02
115 116 0.179163 GCGCCATGCTAAACCAGAAC 60.179 55.000 0.00 0.00 41.73 3.01
116 117 1.453155 CGCCATGCTAAACCAGAACT 58.547 50.000 0.00 0.00 0.00 3.01
117 118 1.812571 CGCCATGCTAAACCAGAACTT 59.187 47.619 0.00 0.00 0.00 2.66
118 119 2.414559 CGCCATGCTAAACCAGAACTTG 60.415 50.000 0.00 0.00 0.00 3.16
119 120 2.819608 GCCATGCTAAACCAGAACTTGA 59.180 45.455 0.00 0.00 0.00 3.02
120 121 3.119708 GCCATGCTAAACCAGAACTTGAG 60.120 47.826 0.00 0.00 0.00 3.02
121 122 4.074970 CCATGCTAAACCAGAACTTGAGT 58.925 43.478 0.00 0.00 0.00 3.41
122 123 4.520492 CCATGCTAAACCAGAACTTGAGTT 59.480 41.667 0.00 0.00 41.64 3.01
123 124 5.010012 CCATGCTAAACCAGAACTTGAGTTT 59.990 40.000 0.00 0.00 38.56 2.66
124 125 6.206634 CCATGCTAAACCAGAACTTGAGTTTA 59.793 38.462 0.00 0.00 38.56 2.01
125 126 7.094205 CCATGCTAAACCAGAACTTGAGTTTAT 60.094 37.037 0.00 0.00 38.56 1.40
126 127 7.817418 TGCTAAACCAGAACTTGAGTTTATT 57.183 32.000 0.00 0.00 38.56 1.40
127 128 7.871853 TGCTAAACCAGAACTTGAGTTTATTC 58.128 34.615 0.00 0.00 38.56 1.75
128 129 7.500892 TGCTAAACCAGAACTTGAGTTTATTCA 59.499 33.333 0.00 0.00 38.56 2.57
129 130 8.017946 GCTAAACCAGAACTTGAGTTTATTCAG 58.982 37.037 0.00 0.00 38.56 3.02
130 131 7.881775 AAACCAGAACTTGAGTTTATTCAGT 57.118 32.000 0.00 0.00 38.56 3.41
131 132 8.974060 AAACCAGAACTTGAGTTTATTCAGTA 57.026 30.769 0.00 0.00 38.56 2.74
132 133 8.974060 AACCAGAACTTGAGTTTATTCAGTAA 57.026 30.769 0.00 0.00 38.56 2.24
133 134 8.379457 ACCAGAACTTGAGTTTATTCAGTAAC 57.621 34.615 0.00 0.00 38.56 2.50
134 135 8.211629 ACCAGAACTTGAGTTTATTCAGTAACT 58.788 33.333 0.00 0.00 38.56 2.24
135 136 8.499162 CCAGAACTTGAGTTTATTCAGTAACTG 58.501 37.037 0.00 0.00 38.56 3.16
136 137 9.261180 CAGAACTTGAGTTTATTCAGTAACTGA 57.739 33.333 0.00 0.00 38.56 3.41
137 138 9.832445 AGAACTTGAGTTTATTCAGTAACTGAA 57.168 29.630 3.42 3.42 44.85 3.02
138 139 9.865484 GAACTTGAGTTTATTCAGTAACTGAAC 57.135 33.333 3.20 0.00 44.24 3.18
139 140 9.614792 AACTTGAGTTTATTCAGTAACTGAACT 57.385 29.630 3.20 0.00 43.01 3.01
149 150 7.490962 TTCAGTAACTGAACTACACCAAATG 57.509 36.000 0.00 0.00 44.27 2.32
150 151 5.995282 TCAGTAACTGAACTACACCAAATGG 59.005 40.000 0.00 0.00 37.57 3.16
151 152 5.763204 CAGTAACTGAACTACACCAAATGGT 59.237 40.000 0.00 0.00 40.84 3.55
152 153 6.262273 CAGTAACTGAACTACACCAAATGGTT 59.738 38.462 1.39 0.00 39.12 3.67
153 154 7.201785 CAGTAACTGAACTACACCAAATGGTTT 60.202 37.037 1.39 0.00 39.12 3.27
165 166 4.809673 CCAAATGGTTTCAGACTTTAGGC 58.190 43.478 0.00 0.00 0.00 3.93
166 167 4.280677 CCAAATGGTTTCAGACTTTAGGCA 59.719 41.667 0.00 0.00 0.00 4.75
167 168 5.047092 CCAAATGGTTTCAGACTTTAGGCAT 60.047 40.000 0.00 0.00 0.00 4.40
168 169 6.458210 CAAATGGTTTCAGACTTTAGGCATT 58.542 36.000 0.00 0.00 0.00 3.56
169 170 5.649782 ATGGTTTCAGACTTTAGGCATTG 57.350 39.130 0.00 0.00 0.00 2.82
170 171 3.255642 TGGTTTCAGACTTTAGGCATTGC 59.744 43.478 0.00 0.00 0.00 3.56
180 181 3.595819 GGCATTGCCTGTCACTCC 58.404 61.111 20.66 0.00 46.69 3.85
181 182 2.401766 GGCATTGCCTGTCACTCCG 61.402 63.158 20.66 0.00 46.69 4.63
182 183 3.044059 GCATTGCCTGTCACTCCGC 62.044 63.158 0.00 0.00 0.00 5.54
183 184 2.045926 ATTGCCTGTCACTCCGCC 60.046 61.111 0.00 0.00 0.00 6.13
184 185 3.628646 ATTGCCTGTCACTCCGCCC 62.629 63.158 0.00 0.00 0.00 6.13
188 189 4.379243 CTGTCACTCCGCCCGCTT 62.379 66.667 0.00 0.00 0.00 4.68
189 190 2.992689 TGTCACTCCGCCCGCTTA 60.993 61.111 0.00 0.00 0.00 3.09
190 191 2.202756 GTCACTCCGCCCGCTTAG 60.203 66.667 0.00 0.00 0.00 2.18
191 192 2.678934 TCACTCCGCCCGCTTAGT 60.679 61.111 0.00 0.00 0.00 2.24
192 193 2.264794 CACTCCGCCCGCTTAGTT 59.735 61.111 0.00 0.00 0.00 2.24
193 194 0.966875 TCACTCCGCCCGCTTAGTTA 60.967 55.000 0.00 0.00 0.00 2.24
194 195 0.104304 CACTCCGCCCGCTTAGTTAT 59.896 55.000 0.00 0.00 0.00 1.89
195 196 0.388294 ACTCCGCCCGCTTAGTTATC 59.612 55.000 0.00 0.00 0.00 1.75
196 197 0.319641 CTCCGCCCGCTTAGTTATCC 60.320 60.000 0.00 0.00 0.00 2.59
197 198 0.757935 TCCGCCCGCTTAGTTATCCT 60.758 55.000 0.00 0.00 0.00 3.24
198 199 0.106149 CCGCCCGCTTAGTTATCCTT 59.894 55.000 0.00 0.00 0.00 3.36
199 200 1.474498 CCGCCCGCTTAGTTATCCTTT 60.474 52.381 0.00 0.00 0.00 3.11
200 201 1.865340 CGCCCGCTTAGTTATCCTTTC 59.135 52.381 0.00 0.00 0.00 2.62
201 202 2.483188 CGCCCGCTTAGTTATCCTTTCT 60.483 50.000 0.00 0.00 0.00 2.52
202 203 3.243636 CGCCCGCTTAGTTATCCTTTCTA 60.244 47.826 0.00 0.00 0.00 2.10
203 204 4.056740 GCCCGCTTAGTTATCCTTTCTAC 58.943 47.826 0.00 0.00 0.00 2.59
204 205 4.202233 GCCCGCTTAGTTATCCTTTCTACT 60.202 45.833 0.00 0.00 0.00 2.57
205 206 5.530712 CCCGCTTAGTTATCCTTTCTACTC 58.469 45.833 0.00 0.00 0.00 2.59
206 207 5.068723 CCCGCTTAGTTATCCTTTCTACTCA 59.931 44.000 0.00 0.00 0.00 3.41
207 208 6.406624 CCCGCTTAGTTATCCTTTCTACTCAA 60.407 42.308 0.00 0.00 0.00 3.02
208 209 7.039882 CCGCTTAGTTATCCTTTCTACTCAAA 58.960 38.462 0.00 0.00 0.00 2.69
209 210 7.010275 CCGCTTAGTTATCCTTTCTACTCAAAC 59.990 40.741 0.00 0.00 0.00 2.93
210 211 7.010275 CGCTTAGTTATCCTTTCTACTCAAACC 59.990 40.741 0.00 0.00 0.00 3.27
211 212 7.280428 GCTTAGTTATCCTTTCTACTCAAACCC 59.720 40.741 0.00 0.00 0.00 4.11
212 213 6.063496 AGTTATCCTTTCTACTCAAACCCC 57.937 41.667 0.00 0.00 0.00 4.95
213 214 5.045066 AGTTATCCTTTCTACTCAAACCCCC 60.045 44.000 0.00 0.00 0.00 5.40
227 228 4.397348 CCCCCTTGAACGGTTCTG 57.603 61.111 20.53 13.22 0.00 3.02
228 229 1.303317 CCCCCTTGAACGGTTCTGG 60.303 63.158 20.53 19.85 0.00 3.86
229 230 1.758592 CCCCTTGAACGGTTCTGGA 59.241 57.895 24.45 11.41 0.00 3.86
230 231 0.109723 CCCCTTGAACGGTTCTGGAA 59.890 55.000 24.45 11.60 0.00 3.53
231 232 1.235724 CCCTTGAACGGTTCTGGAAC 58.764 55.000 24.45 5.02 40.45 3.62
232 233 1.476110 CCCTTGAACGGTTCTGGAACA 60.476 52.381 24.45 4.76 42.85 3.18
233 234 2.504367 CCTTGAACGGTTCTGGAACAT 58.496 47.619 20.53 0.70 42.85 2.71
234 235 2.226437 CCTTGAACGGTTCTGGAACATG 59.774 50.000 20.53 8.93 42.85 3.21
235 236 2.631160 TGAACGGTTCTGGAACATGT 57.369 45.000 20.53 9.47 42.85 3.21
236 237 3.755112 TGAACGGTTCTGGAACATGTA 57.245 42.857 20.53 0.00 42.85 2.29
237 238 3.395639 TGAACGGTTCTGGAACATGTAC 58.604 45.455 20.53 0.00 42.85 2.90
238 239 2.074547 ACGGTTCTGGAACATGTACG 57.925 50.000 14.25 10.42 42.85 3.67
239 240 1.337447 ACGGTTCTGGAACATGTACGG 60.337 52.381 14.25 0.34 42.85 4.02
240 241 1.337447 CGGTTCTGGAACATGTACGGT 60.337 52.381 14.25 0.00 42.85 4.83
241 242 2.094597 CGGTTCTGGAACATGTACGGTA 60.095 50.000 14.25 0.00 42.85 4.02
242 243 3.429822 CGGTTCTGGAACATGTACGGTAT 60.430 47.826 14.25 0.00 42.85 2.73
243 244 3.869246 GGTTCTGGAACATGTACGGTATG 59.131 47.826 14.25 0.00 42.85 2.39
244 245 3.173668 TCTGGAACATGTACGGTATGC 57.826 47.619 0.00 0.00 38.20 3.14
245 246 2.764010 TCTGGAACATGTACGGTATGCT 59.236 45.455 0.00 0.00 38.20 3.79
246 247 3.196901 TCTGGAACATGTACGGTATGCTT 59.803 43.478 0.00 0.00 38.20 3.91
247 248 3.266636 TGGAACATGTACGGTATGCTTG 58.733 45.455 0.00 0.00 0.00 4.01
248 249 2.031683 GGAACATGTACGGTATGCTTGC 59.968 50.000 0.00 0.00 0.00 4.01
249 250 2.394930 ACATGTACGGTATGCTTGCA 57.605 45.000 0.00 0.00 0.00 4.08
250 251 2.705730 ACATGTACGGTATGCTTGCAA 58.294 42.857 0.00 0.00 0.00 4.08
251 252 2.677836 ACATGTACGGTATGCTTGCAAG 59.322 45.455 22.44 22.44 0.00 4.01
252 253 2.465860 TGTACGGTATGCTTGCAAGT 57.534 45.000 26.55 11.36 0.00 3.16
253 254 2.343101 TGTACGGTATGCTTGCAAGTC 58.657 47.619 26.55 18.78 0.00 3.01
254 255 2.289133 TGTACGGTATGCTTGCAAGTCA 60.289 45.455 26.55 23.24 0.00 3.41
255 256 1.442769 ACGGTATGCTTGCAAGTCAG 58.557 50.000 26.55 16.58 0.00 3.51
256 257 1.270839 ACGGTATGCTTGCAAGTCAGT 60.271 47.619 26.55 17.12 0.00 3.41
257 258 1.806542 CGGTATGCTTGCAAGTCAGTT 59.193 47.619 26.55 13.41 0.00 3.16
258 259 3.000041 CGGTATGCTTGCAAGTCAGTTA 59.000 45.455 26.55 12.54 0.00 2.24
259 260 3.062639 CGGTATGCTTGCAAGTCAGTTAG 59.937 47.826 26.55 13.76 0.00 2.34
260 261 4.253685 GGTATGCTTGCAAGTCAGTTAGA 58.746 43.478 26.55 7.82 0.00 2.10
261 262 4.695455 GGTATGCTTGCAAGTCAGTTAGAA 59.305 41.667 26.55 0.00 0.00 2.10
262 263 5.355350 GGTATGCTTGCAAGTCAGTTAGAAT 59.645 40.000 26.55 10.98 0.00 2.40
263 264 4.754372 TGCTTGCAAGTCAGTTAGAATG 57.246 40.909 26.55 0.00 0.00 2.67
264 265 3.058016 TGCTTGCAAGTCAGTTAGAATGC 60.058 43.478 26.55 9.67 40.13 3.56
265 266 3.671702 GCTTGCAAGTCAGTTAGAATGCC 60.672 47.826 26.55 1.94 39.40 4.40
266 267 3.423539 TGCAAGTCAGTTAGAATGCCT 57.576 42.857 0.00 0.00 39.40 4.75
267 268 3.076621 TGCAAGTCAGTTAGAATGCCTG 58.923 45.455 0.00 0.00 39.40 4.85
268 269 3.077359 GCAAGTCAGTTAGAATGCCTGT 58.923 45.455 0.00 0.00 36.08 4.00
269 270 3.120060 GCAAGTCAGTTAGAATGCCTGTG 60.120 47.826 0.00 0.00 36.08 3.66
270 271 2.704572 AGTCAGTTAGAATGCCTGTGC 58.295 47.619 0.00 0.00 38.26 4.57
271 272 2.304180 AGTCAGTTAGAATGCCTGTGCT 59.696 45.455 0.00 0.00 38.71 4.40
272 273 2.675348 GTCAGTTAGAATGCCTGTGCTC 59.325 50.000 0.00 0.00 38.71 4.26
273 274 2.012673 CAGTTAGAATGCCTGTGCTCC 58.987 52.381 0.00 0.00 38.71 4.70
274 275 1.912043 AGTTAGAATGCCTGTGCTCCT 59.088 47.619 0.00 0.00 38.71 3.69
275 276 2.307098 AGTTAGAATGCCTGTGCTCCTT 59.693 45.455 0.00 0.00 38.71 3.36
276 277 3.519510 AGTTAGAATGCCTGTGCTCCTTA 59.480 43.478 0.00 0.00 38.71 2.69
277 278 4.019321 AGTTAGAATGCCTGTGCTCCTTAA 60.019 41.667 0.00 0.00 38.71 1.85
278 279 2.716217 AGAATGCCTGTGCTCCTTAAC 58.284 47.619 0.00 0.00 38.71 2.01
279 280 1.745653 GAATGCCTGTGCTCCTTAACC 59.254 52.381 0.00 0.00 38.71 2.85
280 281 0.034089 ATGCCTGTGCTCCTTAACCC 60.034 55.000 0.00 0.00 38.71 4.11
281 282 1.745489 GCCTGTGCTCCTTAACCCG 60.745 63.158 0.00 0.00 33.53 5.28
282 283 1.980052 CCTGTGCTCCTTAACCCGA 59.020 57.895 0.00 0.00 0.00 5.14
283 284 0.323629 CCTGTGCTCCTTAACCCGAA 59.676 55.000 0.00 0.00 0.00 4.30
284 285 1.676014 CCTGTGCTCCTTAACCCGAAG 60.676 57.143 0.00 0.00 0.00 3.79
285 286 1.002087 CTGTGCTCCTTAACCCGAAGT 59.998 52.381 0.00 0.00 0.00 3.01
286 287 1.270625 TGTGCTCCTTAACCCGAAGTG 60.271 52.381 0.00 0.00 0.00 3.16
287 288 1.001633 GTGCTCCTTAACCCGAAGTGA 59.998 52.381 0.00 0.00 0.00 3.41
288 289 1.695242 TGCTCCTTAACCCGAAGTGAA 59.305 47.619 0.00 0.00 0.00 3.18
289 290 2.289444 TGCTCCTTAACCCGAAGTGAAG 60.289 50.000 0.00 0.00 36.75 3.02
290 291 2.289506 GCTCCTTAACCCGAAGTGAAGT 60.290 50.000 2.97 0.00 35.35 3.01
291 292 3.806157 GCTCCTTAACCCGAAGTGAAGTT 60.806 47.826 2.97 0.00 35.35 2.66
292 293 3.995048 CTCCTTAACCCGAAGTGAAGTTC 59.005 47.826 0.00 0.00 35.35 3.01
293 294 3.644738 TCCTTAACCCGAAGTGAAGTTCT 59.355 43.478 4.17 0.00 35.35 3.01
294 295 4.102054 TCCTTAACCCGAAGTGAAGTTCTT 59.898 41.667 4.17 0.00 35.35 2.52
295 296 4.820173 CCTTAACCCGAAGTGAAGTTCTTT 59.180 41.667 4.17 0.00 35.35 2.52
296 297 5.298527 CCTTAACCCGAAGTGAAGTTCTTTT 59.701 40.000 4.17 0.00 35.35 2.27
297 298 4.632538 AACCCGAAGTGAAGTTCTTTTG 57.367 40.909 4.17 3.22 0.00 2.44
298 299 3.617284 ACCCGAAGTGAAGTTCTTTTGT 58.383 40.909 4.17 0.00 0.00 2.83
299 300 3.377172 ACCCGAAGTGAAGTTCTTTTGTG 59.623 43.478 4.17 0.00 0.00 3.33
300 301 3.377172 CCCGAAGTGAAGTTCTTTTGTGT 59.623 43.478 4.17 0.00 0.00 3.72
301 302 4.342772 CCGAAGTGAAGTTCTTTTGTGTG 58.657 43.478 4.17 0.00 0.00 3.82
302 303 3.786048 CGAAGTGAAGTTCTTTTGTGTGC 59.214 43.478 4.17 0.00 0.00 4.57
303 304 3.405170 AGTGAAGTTCTTTTGTGTGCG 57.595 42.857 4.17 0.00 0.00 5.34
304 305 2.747446 AGTGAAGTTCTTTTGTGTGCGT 59.253 40.909 4.17 0.00 0.00 5.24
305 306 3.098636 GTGAAGTTCTTTTGTGTGCGTC 58.901 45.455 4.17 0.00 0.00 5.19
306 307 3.006940 TGAAGTTCTTTTGTGTGCGTCT 58.993 40.909 4.17 0.00 0.00 4.18
307 308 3.181511 TGAAGTTCTTTTGTGTGCGTCTG 60.182 43.478 4.17 0.00 0.00 3.51
308 309 2.627945 AGTTCTTTTGTGTGCGTCTGA 58.372 42.857 0.00 0.00 0.00 3.27
309 310 3.006940 AGTTCTTTTGTGTGCGTCTGAA 58.993 40.909 0.00 0.00 0.00 3.02
310 311 3.098636 GTTCTTTTGTGTGCGTCTGAAC 58.901 45.455 0.00 0.00 0.00 3.18
311 312 2.627945 TCTTTTGTGTGCGTCTGAACT 58.372 42.857 0.00 0.00 0.00 3.01
312 313 2.351418 TCTTTTGTGTGCGTCTGAACTG 59.649 45.455 0.00 0.00 0.00 3.16
313 314 2.017138 TTTGTGTGCGTCTGAACTGA 57.983 45.000 0.00 0.00 0.00 3.41
314 315 2.017138 TTGTGTGCGTCTGAACTGAA 57.983 45.000 0.00 0.00 0.00 3.02
315 316 1.570813 TGTGTGCGTCTGAACTGAAG 58.429 50.000 0.00 0.00 0.00 3.02
316 317 1.134818 TGTGTGCGTCTGAACTGAAGT 60.135 47.619 0.00 0.00 0.00 3.01
317 318 1.933853 GTGTGCGTCTGAACTGAAGTT 59.066 47.619 0.00 0.00 41.64 2.66
318 319 1.933181 TGTGCGTCTGAACTGAAGTTG 59.067 47.619 0.00 0.00 38.56 3.16
319 320 1.261619 GTGCGTCTGAACTGAAGTTGG 59.738 52.381 0.00 0.00 38.56 3.77
320 321 1.134521 TGCGTCTGAACTGAAGTTGGT 60.135 47.619 0.00 0.00 38.56 3.67
321 322 1.527311 GCGTCTGAACTGAAGTTGGTC 59.473 52.381 0.00 0.00 38.56 4.02
322 323 2.803492 GCGTCTGAACTGAAGTTGGTCT 60.803 50.000 0.00 0.00 38.56 3.85
323 324 3.053455 CGTCTGAACTGAAGTTGGTCTC 58.947 50.000 0.00 0.00 38.56 3.36
324 325 3.490933 CGTCTGAACTGAAGTTGGTCTCA 60.491 47.826 0.00 0.00 38.56 3.27
325 326 3.804873 GTCTGAACTGAAGTTGGTCTCAC 59.195 47.826 0.00 0.00 38.56 3.51
326 327 3.706594 TCTGAACTGAAGTTGGTCTCACT 59.293 43.478 0.00 0.00 38.56 3.41
327 328 4.893524 TCTGAACTGAAGTTGGTCTCACTA 59.106 41.667 0.00 0.00 38.56 2.74
328 329 5.362717 TCTGAACTGAAGTTGGTCTCACTAA 59.637 40.000 0.00 0.00 38.56 2.24
329 330 5.357257 TGAACTGAAGTTGGTCTCACTAAC 58.643 41.667 0.00 0.00 39.49 2.34
330 331 5.105106 TGAACTGAAGTTGGTCTCACTAACA 60.105 40.000 0.00 0.00 41.33 2.41
331 332 4.950050 ACTGAAGTTGGTCTCACTAACAG 58.050 43.478 5.78 0.00 41.33 3.16
332 333 4.649674 ACTGAAGTTGGTCTCACTAACAGA 59.350 41.667 5.78 0.00 41.33 3.41
333 334 5.128827 ACTGAAGTTGGTCTCACTAACAGAA 59.871 40.000 5.78 0.00 41.33 3.02
334 335 5.984725 TGAAGTTGGTCTCACTAACAGAAA 58.015 37.500 5.78 0.00 41.33 2.52
335 336 5.815740 TGAAGTTGGTCTCACTAACAGAAAC 59.184 40.000 5.78 0.00 41.33 2.78
336 337 5.615925 AGTTGGTCTCACTAACAGAAACT 57.384 39.130 5.78 0.00 41.33 2.66
337 338 5.990668 AGTTGGTCTCACTAACAGAAACTT 58.009 37.500 5.78 0.00 41.33 2.66
338 339 6.049790 AGTTGGTCTCACTAACAGAAACTTC 58.950 40.000 5.78 0.00 41.33 3.01
339 340 5.607939 TGGTCTCACTAACAGAAACTTCA 57.392 39.130 0.00 0.00 0.00 3.02
340 341 5.984725 TGGTCTCACTAACAGAAACTTCAA 58.015 37.500 0.00 0.00 0.00 2.69
341 342 5.815740 TGGTCTCACTAACAGAAACTTCAAC 59.184 40.000 0.00 0.00 0.00 3.18
342 343 6.049790 GGTCTCACTAACAGAAACTTCAACT 58.950 40.000 0.00 0.00 0.00 3.16
343 344 6.539103 GGTCTCACTAACAGAAACTTCAACTT 59.461 38.462 0.00 0.00 0.00 2.66
344 345 7.402640 GTCTCACTAACAGAAACTTCAACTTG 58.597 38.462 0.00 0.00 0.00 3.16
345 346 7.064728 GTCTCACTAACAGAAACTTCAACTTGT 59.935 37.037 0.00 0.00 0.00 3.16
346 347 7.606456 TCTCACTAACAGAAACTTCAACTTGTT 59.394 33.333 0.00 0.00 0.00 2.83
347 348 7.748847 TCACTAACAGAAACTTCAACTTGTTC 58.251 34.615 0.00 0.00 0.00 3.18
348 349 7.389330 TCACTAACAGAAACTTCAACTTGTTCA 59.611 33.333 0.00 0.00 0.00 3.18
349 350 8.020819 CACTAACAGAAACTTCAACTTGTTCAA 58.979 33.333 0.00 0.00 0.00 2.69
350 351 8.573035 ACTAACAGAAACTTCAACTTGTTCAAA 58.427 29.630 0.00 0.00 0.00 2.69
351 352 9.405587 CTAACAGAAACTTCAACTTGTTCAAAA 57.594 29.630 0.00 0.00 0.00 2.44
352 353 8.655651 AACAGAAACTTCAACTTGTTCAAAAA 57.344 26.923 0.00 0.00 0.00 1.94
353 354 8.298030 ACAGAAACTTCAACTTGTTCAAAAAG 57.702 30.769 0.00 0.00 0.00 2.27
354 355 8.141268 ACAGAAACTTCAACTTGTTCAAAAAGA 58.859 29.630 0.00 0.00 0.00 2.52
355 356 9.143631 CAGAAACTTCAACTTGTTCAAAAAGAT 57.856 29.630 0.00 0.00 0.00 2.40
359 360 9.788960 AACTTCAACTTGTTCAAAAAGATACTC 57.211 29.630 0.00 0.00 0.00 2.59
360 361 8.406297 ACTTCAACTTGTTCAAAAAGATACTCC 58.594 33.333 0.00 0.00 0.00 3.85
361 362 7.272037 TCAACTTGTTCAAAAAGATACTCCC 57.728 36.000 0.00 0.00 0.00 4.30
362 363 7.060421 TCAACTTGTTCAAAAAGATACTCCCT 58.940 34.615 0.00 0.00 0.00 4.20
363 364 7.228706 TCAACTTGTTCAAAAAGATACTCCCTC 59.771 37.037 0.00 0.00 0.00 4.30
364 365 6.842676 ACTTGTTCAAAAAGATACTCCCTCT 58.157 36.000 0.00 0.00 0.00 3.69
365 366 7.974504 ACTTGTTCAAAAAGATACTCCCTCTA 58.025 34.615 0.00 0.00 0.00 2.43
366 367 8.606830 ACTTGTTCAAAAAGATACTCCCTCTAT 58.393 33.333 0.00 0.00 0.00 1.98
367 368 9.454859 CTTGTTCAAAAAGATACTCCCTCTATT 57.545 33.333 0.00 0.00 0.00 1.73
368 369 9.807921 TTGTTCAAAAAGATACTCCCTCTATTT 57.192 29.630 0.00 0.00 0.00 1.40
369 370 9.449719 TGTTCAAAAAGATACTCCCTCTATTTC 57.550 33.333 0.00 0.00 0.00 2.17
370 371 9.449719 GTTCAAAAAGATACTCCCTCTATTTCA 57.550 33.333 0.00 0.00 0.00 2.69
449 450 1.799933 ATGAAGAGAGGGCGGAGAAT 58.200 50.000 0.00 0.00 0.00 2.40
459 460 2.441001 AGGGCGGAGAATCAAATCATCT 59.559 45.455 0.00 0.00 36.25 2.90
856 868 4.803426 CAGCCGAGCCGTCAGGAC 62.803 72.222 0.00 0.00 41.02 3.85
1144 1183 1.820519 TGATGAATGAAACCTGCAGGC 59.179 47.619 33.06 17.12 39.32 4.85
1239 1291 4.620086 TGATTCCTTGTAGTAGGAGGGA 57.380 45.455 0.00 0.00 44.82 4.20
1614 2009 7.658575 CACAAAGAATCATGGAAACCAGATTTT 59.341 33.333 12.73 7.78 36.75 1.82
1673 2068 7.247019 GCAATGGTTAACAAATGTGTGTTTTT 58.753 30.769 8.10 0.00 41.84 1.94
2336 2749 4.207165 AGCATTTGTTTGAGTGGTGTAGT 58.793 39.130 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.601243 AACAAATTAAAAATCATAGCGTCGAG 57.399 30.769 0.00 0.00 0.00 4.04
1 2 8.231161 TGAACAAATTAAAAATCATAGCGTCGA 58.769 29.630 0.00 0.00 0.00 4.20
12 13 9.783081 AGCAGGAAGAATGAACAAATTAAAAAT 57.217 25.926 0.00 0.00 0.00 1.82
13 14 9.260002 GAGCAGGAAGAATGAACAAATTAAAAA 57.740 29.630 0.00 0.00 0.00 1.94
14 15 8.420222 TGAGCAGGAAGAATGAACAAATTAAAA 58.580 29.630 0.00 0.00 0.00 1.52
15 16 7.867403 GTGAGCAGGAAGAATGAACAAATTAAA 59.133 33.333 0.00 0.00 0.00 1.52
16 17 7.370383 GTGAGCAGGAAGAATGAACAAATTAA 58.630 34.615 0.00 0.00 0.00 1.40
17 18 6.348458 CGTGAGCAGGAAGAATGAACAAATTA 60.348 38.462 0.00 0.00 0.00 1.40
18 19 5.563475 CGTGAGCAGGAAGAATGAACAAATT 60.563 40.000 0.00 0.00 0.00 1.82
19 20 4.083110 CGTGAGCAGGAAGAATGAACAAAT 60.083 41.667 0.00 0.00 0.00 2.32
20 21 3.250762 CGTGAGCAGGAAGAATGAACAAA 59.749 43.478 0.00 0.00 0.00 2.83
21 22 2.807967 CGTGAGCAGGAAGAATGAACAA 59.192 45.455 0.00 0.00 0.00 2.83
22 23 2.224281 ACGTGAGCAGGAAGAATGAACA 60.224 45.455 0.00 0.00 0.00 3.18
23 24 2.417719 ACGTGAGCAGGAAGAATGAAC 58.582 47.619 0.00 0.00 0.00 3.18
24 25 2.807967 CAACGTGAGCAGGAAGAATGAA 59.192 45.455 0.00 0.00 0.00 2.57
25 26 2.037121 TCAACGTGAGCAGGAAGAATGA 59.963 45.455 0.00 0.00 0.00 2.57
26 27 2.416747 TCAACGTGAGCAGGAAGAATG 58.583 47.619 0.00 0.00 0.00 2.67
27 28 2.839486 TCAACGTGAGCAGGAAGAAT 57.161 45.000 0.00 0.00 0.00 2.40
28 29 2.839486 ATCAACGTGAGCAGGAAGAA 57.161 45.000 0.00 0.00 0.00 2.52
29 30 3.258372 AGTTATCAACGTGAGCAGGAAGA 59.742 43.478 0.00 0.00 36.23 2.87
30 31 3.369147 CAGTTATCAACGTGAGCAGGAAG 59.631 47.826 0.00 0.00 36.23 3.46
31 32 3.325870 CAGTTATCAACGTGAGCAGGAA 58.674 45.455 0.00 0.00 36.23 3.36
32 33 2.353704 CCAGTTATCAACGTGAGCAGGA 60.354 50.000 0.00 0.00 36.23 3.86
33 34 2.002586 CCAGTTATCAACGTGAGCAGG 58.997 52.381 0.00 0.00 36.23 4.85
34 35 2.959516 TCCAGTTATCAACGTGAGCAG 58.040 47.619 0.00 0.00 36.23 4.24
35 36 3.521560 GATCCAGTTATCAACGTGAGCA 58.478 45.455 0.00 0.00 36.23 4.26
36 37 2.535984 CGATCCAGTTATCAACGTGAGC 59.464 50.000 0.00 0.00 36.23 4.26
37 38 3.116300 CCGATCCAGTTATCAACGTGAG 58.884 50.000 0.00 0.00 36.23 3.51
38 39 2.494471 ACCGATCCAGTTATCAACGTGA 59.506 45.455 0.00 0.00 36.23 4.35
39 40 2.888594 ACCGATCCAGTTATCAACGTG 58.111 47.619 0.00 0.00 36.23 4.49
40 41 3.194968 AGAACCGATCCAGTTATCAACGT 59.805 43.478 0.00 0.00 36.23 3.99
41 42 3.782046 AGAACCGATCCAGTTATCAACG 58.218 45.455 0.00 0.00 36.23 4.10
42 43 4.201822 GCAAGAACCGATCCAGTTATCAAC 60.202 45.833 0.00 0.00 0.00 3.18
43 44 3.938963 GCAAGAACCGATCCAGTTATCAA 59.061 43.478 0.00 0.00 0.00 2.57
44 45 3.531538 GCAAGAACCGATCCAGTTATCA 58.468 45.455 0.00 0.00 0.00 2.15
45 46 2.540101 CGCAAGAACCGATCCAGTTATC 59.460 50.000 0.00 0.00 43.02 1.75
46 47 2.093658 ACGCAAGAACCGATCCAGTTAT 60.094 45.455 0.00 0.00 43.62 1.89
47 48 1.274167 ACGCAAGAACCGATCCAGTTA 59.726 47.619 0.00 0.00 43.62 2.24
48 49 0.034896 ACGCAAGAACCGATCCAGTT 59.965 50.000 0.00 0.00 43.62 3.16
49 50 0.670546 CACGCAAGAACCGATCCAGT 60.671 55.000 0.00 0.00 43.62 4.00
50 51 1.970917 GCACGCAAGAACCGATCCAG 61.971 60.000 0.00 0.00 43.62 3.86
51 52 2.032634 GCACGCAAGAACCGATCCA 61.033 57.895 0.00 0.00 43.62 3.41
52 53 2.750888 GGCACGCAAGAACCGATCC 61.751 63.158 0.00 0.00 43.62 3.36
53 54 2.785258 GGCACGCAAGAACCGATC 59.215 61.111 0.00 0.00 43.62 3.69
66 67 0.170116 TTCAATGAATTCGCCGGCAC 59.830 50.000 28.98 12.10 0.00 5.01
67 68 0.884514 TTTCAATGAATTCGCCGGCA 59.115 45.000 28.98 8.41 0.00 5.69
68 69 2.119457 GATTTCAATGAATTCGCCGGC 58.881 47.619 19.07 19.07 0.00 6.13
69 70 3.419264 TGATTTCAATGAATTCGCCGG 57.581 42.857 11.67 0.00 0.00 6.13
70 71 5.954434 ATTTGATTTCAATGAATTCGCCG 57.046 34.783 11.67 0.00 35.55 6.46
71 72 6.962678 CCAAATTTGATTTCAATGAATTCGCC 59.037 34.615 19.86 0.00 35.55 5.54
72 73 6.466730 GCCAAATTTGATTTCAATGAATTCGC 59.533 34.615 19.86 4.65 35.55 4.70
73 74 6.679500 CGCCAAATTTGATTTCAATGAATTCG 59.320 34.615 19.86 0.00 35.55 3.34
74 75 6.466730 GCGCCAAATTTGATTTCAATGAATTC 59.533 34.615 19.86 10.06 35.55 2.17
75 76 6.316319 GCGCCAAATTTGATTTCAATGAATT 58.684 32.000 19.86 0.00 35.55 2.17
76 77 5.163733 GGCGCCAAATTTGATTTCAATGAAT 60.164 36.000 24.80 0.00 35.55 2.57
77 78 4.153835 GGCGCCAAATTTGATTTCAATGAA 59.846 37.500 24.80 0.00 35.55 2.57
78 79 3.683822 GGCGCCAAATTTGATTTCAATGA 59.316 39.130 24.80 0.00 35.55 2.57
79 80 3.436015 TGGCGCCAAATTTGATTTCAATG 59.564 39.130 30.74 1.30 35.55 2.82
80 81 3.672808 TGGCGCCAAATTTGATTTCAAT 58.327 36.364 30.74 0.00 35.55 2.57
81 82 3.117491 TGGCGCCAAATTTGATTTCAA 57.883 38.095 30.74 0.00 0.00 2.69
82 83 2.827800 TGGCGCCAAATTTGATTTCA 57.172 40.000 30.74 9.43 0.00 2.69
83 84 2.223089 GCATGGCGCCAAATTTGATTTC 60.223 45.455 36.33 10.21 32.94 2.17
84 85 1.738908 GCATGGCGCCAAATTTGATTT 59.261 42.857 36.33 11.02 32.94 2.17
85 86 1.065998 AGCATGGCGCCAAATTTGATT 60.066 42.857 36.33 15.58 44.04 2.57
86 87 0.538118 AGCATGGCGCCAAATTTGAT 59.462 45.000 36.33 23.60 44.04 2.57
87 88 1.180907 TAGCATGGCGCCAAATTTGA 58.819 45.000 36.33 14.20 44.04 2.69
88 89 2.007360 TTAGCATGGCGCCAAATTTG 57.993 45.000 36.33 27.59 44.04 2.32
89 90 2.345876 GTTTAGCATGGCGCCAAATTT 58.654 42.857 36.33 21.08 44.04 1.82
90 91 1.405391 GGTTTAGCATGGCGCCAAATT 60.405 47.619 36.33 22.95 44.04 1.82
91 92 0.175531 GGTTTAGCATGGCGCCAAAT 59.824 50.000 36.33 23.85 44.04 2.32
92 93 1.181741 TGGTTTAGCATGGCGCCAAA 61.182 50.000 36.33 21.02 44.04 3.28
93 94 1.594194 CTGGTTTAGCATGGCGCCAA 61.594 55.000 36.33 15.14 44.04 4.52
94 95 2.034843 TGGTTTAGCATGGCGCCA 59.965 55.556 34.80 34.80 44.04 5.69
95 96 1.312371 TTCTGGTTTAGCATGGCGCC 61.312 55.000 22.73 22.73 44.04 6.53
96 97 0.179163 GTTCTGGTTTAGCATGGCGC 60.179 55.000 0.00 0.00 42.91 6.53
97 98 1.453155 AGTTCTGGTTTAGCATGGCG 58.547 50.000 0.00 0.00 0.00 5.69
98 99 2.819608 TCAAGTTCTGGTTTAGCATGGC 59.180 45.455 0.00 0.00 0.00 4.40
99 100 4.074970 ACTCAAGTTCTGGTTTAGCATGG 58.925 43.478 0.00 0.00 0.00 3.66
100 101 5.695851 AACTCAAGTTCTGGTTTAGCATG 57.304 39.130 0.00 0.00 31.64 4.06
101 102 8.409358 AATAAACTCAAGTTCTGGTTTAGCAT 57.591 30.769 0.00 0.00 37.25 3.79
102 103 7.500892 TGAATAAACTCAAGTTCTGGTTTAGCA 59.499 33.333 0.00 0.00 37.25 3.49
103 104 7.871853 TGAATAAACTCAAGTTCTGGTTTAGC 58.128 34.615 0.00 0.00 37.25 3.09
104 105 9.057089 ACTGAATAAACTCAAGTTCTGGTTTAG 57.943 33.333 0.00 0.00 37.25 1.85
105 106 8.974060 ACTGAATAAACTCAAGTTCTGGTTTA 57.026 30.769 0.00 0.00 37.25 2.01
106 107 7.881775 ACTGAATAAACTCAAGTTCTGGTTT 57.118 32.000 0.00 0.00 37.25 3.27
107 108 8.837389 GTTACTGAATAAACTCAAGTTCTGGTT 58.163 33.333 0.00 0.00 37.25 3.67
108 109 8.211629 AGTTACTGAATAAACTCAAGTTCTGGT 58.788 33.333 0.00 0.00 37.25 4.00
109 110 8.499162 CAGTTACTGAATAAACTCAAGTTCTGG 58.501 37.037 6.50 0.00 33.72 3.86
110 111 9.261180 TCAGTTACTGAATAAACTCAAGTTCTG 57.739 33.333 13.16 0.00 37.57 3.02
111 112 9.832445 TTCAGTTACTGAATAAACTCAAGTTCT 57.168 29.630 22.16 0.00 44.27 3.01
125 126 6.485313 CCATTTGGTGTAGTTCAGTTACTGAA 59.515 38.462 22.16 22.16 46.50 3.02
126 127 5.995282 CCATTTGGTGTAGTTCAGTTACTGA 59.005 40.000 11.42 11.42 38.87 3.41
127 128 6.241207 CCATTTGGTGTAGTTCAGTTACTG 57.759 41.667 5.94 5.94 0.00 2.74
143 144 4.280677 TGCCTAAAGTCTGAAACCATTTGG 59.719 41.667 0.00 0.00 42.17 3.28
144 145 5.452078 TGCCTAAAGTCTGAAACCATTTG 57.548 39.130 0.00 0.00 0.00 2.32
145 146 6.458210 CAATGCCTAAAGTCTGAAACCATTT 58.542 36.000 0.00 0.00 0.00 2.32
146 147 5.567423 GCAATGCCTAAAGTCTGAAACCATT 60.567 40.000 0.00 0.00 0.00 3.16
147 148 4.082026 GCAATGCCTAAAGTCTGAAACCAT 60.082 41.667 0.00 0.00 0.00 3.55
148 149 3.255642 GCAATGCCTAAAGTCTGAAACCA 59.744 43.478 0.00 0.00 0.00 3.67
149 150 3.367395 GGCAATGCCTAAAGTCTGAAACC 60.367 47.826 18.47 0.00 46.69 3.27
150 151 3.838120 GGCAATGCCTAAAGTCTGAAAC 58.162 45.455 18.47 0.00 46.69 2.78
164 165 3.044059 GCGGAGTGACAGGCAATGC 62.044 63.158 0.00 0.00 0.00 3.56
165 166 2.401766 GGCGGAGTGACAGGCAATG 61.402 63.158 0.00 0.00 38.87 2.82
166 167 2.045926 GGCGGAGTGACAGGCAAT 60.046 61.111 0.00 0.00 38.87 3.56
167 168 4.329545 GGGCGGAGTGACAGGCAA 62.330 66.667 0.00 0.00 40.55 4.52
171 172 2.890847 CTAAGCGGGCGGAGTGACAG 62.891 65.000 0.00 0.00 0.00 3.51
172 173 2.992689 TAAGCGGGCGGAGTGACA 60.993 61.111 0.00 0.00 0.00 3.58
173 174 2.202756 CTAAGCGGGCGGAGTGAC 60.203 66.667 0.00 0.00 0.00 3.67
174 175 0.966875 TAACTAAGCGGGCGGAGTGA 60.967 55.000 0.00 0.00 0.00 3.41
175 176 0.104304 ATAACTAAGCGGGCGGAGTG 59.896 55.000 0.00 0.00 0.00 3.51
176 177 0.388294 GATAACTAAGCGGGCGGAGT 59.612 55.000 0.00 0.00 0.00 3.85
177 178 0.319641 GGATAACTAAGCGGGCGGAG 60.320 60.000 0.00 0.00 0.00 4.63
178 179 0.757935 AGGATAACTAAGCGGGCGGA 60.758 55.000 0.00 0.00 0.00 5.54
179 180 0.106149 AAGGATAACTAAGCGGGCGG 59.894 55.000 0.00 0.00 0.00 6.13
180 181 1.865340 GAAAGGATAACTAAGCGGGCG 59.135 52.381 0.00 0.00 0.00 6.13
181 182 3.195471 AGAAAGGATAACTAAGCGGGC 57.805 47.619 0.00 0.00 0.00 6.13
182 183 5.068723 TGAGTAGAAAGGATAACTAAGCGGG 59.931 44.000 0.00 0.00 0.00 6.13
183 184 6.145338 TGAGTAGAAAGGATAACTAAGCGG 57.855 41.667 0.00 0.00 0.00 5.52
184 185 7.010275 GGTTTGAGTAGAAAGGATAACTAAGCG 59.990 40.741 0.00 0.00 0.00 4.68
185 186 7.280428 GGGTTTGAGTAGAAAGGATAACTAAGC 59.720 40.741 0.00 0.00 0.00 3.09
186 187 7.769507 GGGGTTTGAGTAGAAAGGATAACTAAG 59.230 40.741 0.00 0.00 0.00 2.18
187 188 7.311486 GGGGGTTTGAGTAGAAAGGATAACTAA 60.311 40.741 0.00 0.00 0.00 2.24
188 189 6.157471 GGGGGTTTGAGTAGAAAGGATAACTA 59.843 42.308 0.00 0.00 0.00 2.24
189 190 5.045066 GGGGGTTTGAGTAGAAAGGATAACT 60.045 44.000 0.00 0.00 0.00 2.24
190 191 5.191426 GGGGGTTTGAGTAGAAAGGATAAC 58.809 45.833 0.00 0.00 0.00 1.89
191 192 5.446260 GGGGGTTTGAGTAGAAAGGATAA 57.554 43.478 0.00 0.00 0.00 1.75
210 211 1.303317 CCAGAACCGTTCAAGGGGG 60.303 63.158 13.69 3.40 35.02 5.40
211 212 0.109723 TTCCAGAACCGTTCAAGGGG 59.890 55.000 13.69 8.96 35.02 4.79
212 213 1.235724 GTTCCAGAACCGTTCAAGGG 58.764 55.000 13.69 11.18 35.36 3.95
213 214 1.961793 TGTTCCAGAACCGTTCAAGG 58.038 50.000 13.69 13.73 40.46 3.61
214 215 2.878406 ACATGTTCCAGAACCGTTCAAG 59.122 45.455 13.69 5.54 40.46 3.02
215 216 2.925724 ACATGTTCCAGAACCGTTCAA 58.074 42.857 13.69 0.00 40.46 2.69
216 217 2.631160 ACATGTTCCAGAACCGTTCA 57.369 45.000 13.69 0.00 40.46 3.18
217 218 2.410730 CGTACATGTTCCAGAACCGTTC 59.589 50.000 2.30 2.81 40.46 3.95
218 219 2.409975 CGTACATGTTCCAGAACCGTT 58.590 47.619 2.30 0.00 40.46 4.44
219 220 1.337447 CCGTACATGTTCCAGAACCGT 60.337 52.381 2.30 7.75 40.46 4.83
220 221 1.337447 ACCGTACATGTTCCAGAACCG 60.337 52.381 2.30 4.05 40.46 4.44
221 222 2.467566 ACCGTACATGTTCCAGAACC 57.532 50.000 2.30 0.00 40.46 3.62
222 223 3.308866 GCATACCGTACATGTTCCAGAAC 59.691 47.826 2.30 3.52 41.50 3.01
223 224 3.196901 AGCATACCGTACATGTTCCAGAA 59.803 43.478 2.30 0.00 0.00 3.02
224 225 2.764010 AGCATACCGTACATGTTCCAGA 59.236 45.455 2.30 0.00 0.00 3.86
225 226 3.179443 AGCATACCGTACATGTTCCAG 57.821 47.619 2.30 0.00 0.00 3.86
226 227 3.266636 CAAGCATACCGTACATGTTCCA 58.733 45.455 2.30 0.00 0.00 3.53
227 228 2.031683 GCAAGCATACCGTACATGTTCC 59.968 50.000 2.30 0.00 0.00 3.62
228 229 2.675844 TGCAAGCATACCGTACATGTTC 59.324 45.455 2.30 0.00 0.00 3.18
229 230 2.705730 TGCAAGCATACCGTACATGTT 58.294 42.857 2.30 0.00 0.00 2.71
230 231 2.394930 TGCAAGCATACCGTACATGT 57.605 45.000 2.69 2.69 0.00 3.21
231 232 2.677836 ACTTGCAAGCATACCGTACATG 59.322 45.455 26.27 0.00 0.00 3.21
232 233 2.936498 GACTTGCAAGCATACCGTACAT 59.064 45.455 26.27 1.65 0.00 2.29
233 234 2.289133 TGACTTGCAAGCATACCGTACA 60.289 45.455 26.27 9.43 0.00 2.90
234 235 2.343101 TGACTTGCAAGCATACCGTAC 58.657 47.619 26.27 7.18 0.00 3.67
235 236 2.028476 ACTGACTTGCAAGCATACCGTA 60.028 45.455 26.27 3.29 0.00 4.02
236 237 1.270839 ACTGACTTGCAAGCATACCGT 60.271 47.619 26.27 14.76 0.00 4.83
237 238 1.442769 ACTGACTTGCAAGCATACCG 58.557 50.000 26.27 14.20 0.00 4.02
238 239 4.253685 TCTAACTGACTTGCAAGCATACC 58.746 43.478 26.27 10.75 0.00 2.73
239 240 5.862924 TTCTAACTGACTTGCAAGCATAC 57.137 39.130 26.27 14.93 0.00 2.39
240 241 5.163723 GCATTCTAACTGACTTGCAAGCATA 60.164 40.000 26.27 11.57 35.38 3.14
241 242 4.380233 GCATTCTAACTGACTTGCAAGCAT 60.380 41.667 26.27 7.92 35.38 3.79
242 243 3.058016 GCATTCTAACTGACTTGCAAGCA 60.058 43.478 26.27 21.62 35.38 3.91
243 244 3.496155 GCATTCTAACTGACTTGCAAGC 58.504 45.455 26.27 18.37 35.38 4.01
244 245 3.755378 AGGCATTCTAACTGACTTGCAAG 59.245 43.478 24.84 24.84 36.39 4.01
245 246 3.503363 CAGGCATTCTAACTGACTTGCAA 59.497 43.478 0.00 0.00 36.39 4.08
246 247 3.076621 CAGGCATTCTAACTGACTTGCA 58.923 45.455 0.00 0.00 36.39 4.08
247 248 3.077359 ACAGGCATTCTAACTGACTTGC 58.923 45.455 0.00 0.00 36.17 4.01
248 249 3.120060 GCACAGGCATTCTAACTGACTTG 60.120 47.826 0.00 0.00 40.72 3.16
249 250 3.077359 GCACAGGCATTCTAACTGACTT 58.923 45.455 0.00 0.00 40.72 3.01
250 251 2.304180 AGCACAGGCATTCTAACTGACT 59.696 45.455 0.00 0.00 44.61 3.41
251 252 2.675348 GAGCACAGGCATTCTAACTGAC 59.325 50.000 0.00 0.00 44.61 3.51
252 253 2.355108 GGAGCACAGGCATTCTAACTGA 60.355 50.000 0.00 0.00 44.61 3.41
253 254 2.012673 GGAGCACAGGCATTCTAACTG 58.987 52.381 0.00 0.00 44.61 3.16
254 255 1.912043 AGGAGCACAGGCATTCTAACT 59.088 47.619 0.00 0.00 44.61 2.24
255 256 2.409948 AGGAGCACAGGCATTCTAAC 57.590 50.000 0.00 0.00 44.61 2.34
256 257 4.261801 GTTAAGGAGCACAGGCATTCTAA 58.738 43.478 0.00 0.00 44.61 2.10
257 258 3.370527 GGTTAAGGAGCACAGGCATTCTA 60.371 47.826 0.00 0.00 44.61 2.10
258 259 2.619074 GGTTAAGGAGCACAGGCATTCT 60.619 50.000 0.00 0.00 44.61 2.40
259 260 1.745653 GGTTAAGGAGCACAGGCATTC 59.254 52.381 0.00 0.00 44.61 2.67
260 261 1.616994 GGGTTAAGGAGCACAGGCATT 60.617 52.381 0.00 0.00 44.61 3.56
261 262 0.034089 GGGTTAAGGAGCACAGGCAT 60.034 55.000 0.00 0.00 44.61 4.40
262 263 1.378762 GGGTTAAGGAGCACAGGCA 59.621 57.895 0.00 0.00 44.61 4.75
263 264 1.745489 CGGGTTAAGGAGCACAGGC 60.745 63.158 0.00 0.00 41.61 4.85
264 265 0.323629 TTCGGGTTAAGGAGCACAGG 59.676 55.000 0.00 0.00 0.00 4.00
265 266 1.002087 ACTTCGGGTTAAGGAGCACAG 59.998 52.381 0.00 0.00 0.00 3.66
266 267 1.053424 ACTTCGGGTTAAGGAGCACA 58.947 50.000 0.00 0.00 0.00 4.57
267 268 1.001633 TCACTTCGGGTTAAGGAGCAC 59.998 52.381 0.00 0.00 0.00 4.40
268 269 1.344065 TCACTTCGGGTTAAGGAGCA 58.656 50.000 0.00 0.00 0.00 4.26
269 270 2.289506 ACTTCACTTCGGGTTAAGGAGC 60.290 50.000 7.76 0.00 34.46 4.70
270 271 3.679824 ACTTCACTTCGGGTTAAGGAG 57.320 47.619 7.76 0.00 34.46 3.69
271 272 3.644738 AGAACTTCACTTCGGGTTAAGGA 59.355 43.478 7.76 0.00 34.46 3.36
272 273 4.004196 AGAACTTCACTTCGGGTTAAGG 57.996 45.455 7.76 0.00 34.46 2.69
273 274 6.183360 ACAAAAGAACTTCACTTCGGGTTAAG 60.183 38.462 0.00 3.20 35.81 1.85
274 275 5.648960 ACAAAAGAACTTCACTTCGGGTTAA 59.351 36.000 0.00 0.00 0.00 2.01
275 276 5.065474 CACAAAAGAACTTCACTTCGGGTTA 59.935 40.000 0.00 0.00 0.00 2.85
276 277 4.014406 ACAAAAGAACTTCACTTCGGGTT 58.986 39.130 0.00 0.00 0.00 4.11
277 278 3.377172 CACAAAAGAACTTCACTTCGGGT 59.623 43.478 0.00 0.00 0.00 5.28
278 279 3.377172 ACACAAAAGAACTTCACTTCGGG 59.623 43.478 0.00 0.00 0.00 5.14
279 280 4.342772 CACACAAAAGAACTTCACTTCGG 58.657 43.478 0.00 0.00 0.00 4.30
280 281 3.786048 GCACACAAAAGAACTTCACTTCG 59.214 43.478 0.00 0.00 0.00 3.79
281 282 3.786048 CGCACACAAAAGAACTTCACTTC 59.214 43.478 0.00 0.00 0.00 3.01
282 283 3.190535 ACGCACACAAAAGAACTTCACTT 59.809 39.130 0.00 0.00 0.00 3.16
283 284 2.747446 ACGCACACAAAAGAACTTCACT 59.253 40.909 0.00 0.00 0.00 3.41
284 285 3.098636 GACGCACACAAAAGAACTTCAC 58.901 45.455 0.00 0.00 0.00 3.18
285 286 3.006940 AGACGCACACAAAAGAACTTCA 58.993 40.909 0.00 0.00 0.00 3.02
286 287 3.063452 TCAGACGCACACAAAAGAACTTC 59.937 43.478 0.00 0.00 0.00 3.01
287 288 3.006940 TCAGACGCACACAAAAGAACTT 58.993 40.909 0.00 0.00 0.00 2.66
288 289 2.627945 TCAGACGCACACAAAAGAACT 58.372 42.857 0.00 0.00 0.00 3.01
289 290 3.098636 GTTCAGACGCACACAAAAGAAC 58.901 45.455 0.00 0.00 0.00 3.01
290 291 3.006940 AGTTCAGACGCACACAAAAGAA 58.993 40.909 0.00 0.00 0.00 2.52
291 292 2.351418 CAGTTCAGACGCACACAAAAGA 59.649 45.455 0.00 0.00 0.00 2.52
292 293 2.351418 TCAGTTCAGACGCACACAAAAG 59.649 45.455 0.00 0.00 0.00 2.27
293 294 2.351455 TCAGTTCAGACGCACACAAAA 58.649 42.857 0.00 0.00 0.00 2.44
294 295 2.017138 TCAGTTCAGACGCACACAAA 57.983 45.000 0.00 0.00 0.00 2.83
295 296 1.933181 CTTCAGTTCAGACGCACACAA 59.067 47.619 0.00 0.00 0.00 3.33
296 297 1.134818 ACTTCAGTTCAGACGCACACA 60.135 47.619 0.00 0.00 0.00 3.72
297 298 1.571919 ACTTCAGTTCAGACGCACAC 58.428 50.000 0.00 0.00 0.00 3.82
298 299 1.933181 CAACTTCAGTTCAGACGCACA 59.067 47.619 0.00 0.00 35.83 4.57
299 300 1.261619 CCAACTTCAGTTCAGACGCAC 59.738 52.381 0.00 0.00 35.83 5.34
300 301 1.134521 ACCAACTTCAGTTCAGACGCA 60.135 47.619 0.00 0.00 35.83 5.24
301 302 1.527311 GACCAACTTCAGTTCAGACGC 59.473 52.381 0.00 0.00 35.83 5.19
302 303 3.053455 GAGACCAACTTCAGTTCAGACG 58.947 50.000 0.00 0.00 35.83 4.18
303 304 3.804873 GTGAGACCAACTTCAGTTCAGAC 59.195 47.826 0.00 0.00 35.83 3.51
304 305 3.706594 AGTGAGACCAACTTCAGTTCAGA 59.293 43.478 0.00 0.00 35.83 3.27
305 306 4.065321 AGTGAGACCAACTTCAGTTCAG 57.935 45.455 0.00 0.00 35.83 3.02
306 307 5.105106 TGTTAGTGAGACCAACTTCAGTTCA 60.105 40.000 0.00 0.00 35.83 3.18
307 308 5.357257 TGTTAGTGAGACCAACTTCAGTTC 58.643 41.667 0.00 0.00 35.83 3.01
308 309 5.128827 TCTGTTAGTGAGACCAACTTCAGTT 59.871 40.000 0.00 0.00 39.12 3.16
309 310 4.649674 TCTGTTAGTGAGACCAACTTCAGT 59.350 41.667 0.00 0.00 0.00 3.41
310 311 5.201713 TCTGTTAGTGAGACCAACTTCAG 57.798 43.478 0.00 0.00 0.00 3.02
311 312 5.607939 TTCTGTTAGTGAGACCAACTTCA 57.392 39.130 0.00 0.00 0.00 3.02
312 313 6.049790 AGTTTCTGTTAGTGAGACCAACTTC 58.950 40.000 0.00 0.00 0.00 3.01
313 314 5.990668 AGTTTCTGTTAGTGAGACCAACTT 58.009 37.500 0.00 0.00 0.00 2.66
314 315 5.615925 AGTTTCTGTTAGTGAGACCAACT 57.384 39.130 0.00 0.00 0.00 3.16
315 316 5.815740 TGAAGTTTCTGTTAGTGAGACCAAC 59.184 40.000 0.00 0.00 0.00 3.77
316 317 5.984725 TGAAGTTTCTGTTAGTGAGACCAA 58.015 37.500 0.00 0.00 0.00 3.67
317 318 5.607939 TGAAGTTTCTGTTAGTGAGACCA 57.392 39.130 0.00 0.00 0.00 4.02
318 319 6.049790 AGTTGAAGTTTCTGTTAGTGAGACC 58.950 40.000 0.00 0.00 0.00 3.85
319 320 7.064728 ACAAGTTGAAGTTTCTGTTAGTGAGAC 59.935 37.037 10.54 0.00 0.00 3.36
320 321 7.103641 ACAAGTTGAAGTTTCTGTTAGTGAGA 58.896 34.615 10.54 0.00 0.00 3.27
321 322 7.308782 ACAAGTTGAAGTTTCTGTTAGTGAG 57.691 36.000 10.54 0.00 0.00 3.51
322 323 7.389330 TGAACAAGTTGAAGTTTCTGTTAGTGA 59.611 33.333 10.54 0.00 0.00 3.41
323 324 7.526608 TGAACAAGTTGAAGTTTCTGTTAGTG 58.473 34.615 10.54 0.00 0.00 2.74
324 325 7.681939 TGAACAAGTTGAAGTTTCTGTTAGT 57.318 32.000 10.54 0.00 0.00 2.24
325 326 8.964420 TTTGAACAAGTTGAAGTTTCTGTTAG 57.036 30.769 10.54 0.00 0.00 2.34
326 327 9.751542 TTTTTGAACAAGTTGAAGTTTCTGTTA 57.248 25.926 10.54 0.00 0.00 2.41
327 328 8.655651 TTTTTGAACAAGTTGAAGTTTCTGTT 57.344 26.923 10.54 0.00 0.00 3.16
328 329 8.141268 TCTTTTTGAACAAGTTGAAGTTTCTGT 58.859 29.630 10.54 0.00 0.00 3.41
329 330 8.519492 TCTTTTTGAACAAGTTGAAGTTTCTG 57.481 30.769 10.54 0.00 0.00 3.02
333 334 9.788960 GAGTATCTTTTTGAACAAGTTGAAGTT 57.211 29.630 10.54 0.00 0.00 2.66
334 335 8.406297 GGAGTATCTTTTTGAACAAGTTGAAGT 58.594 33.333 10.54 0.00 33.73 3.01
335 336 7.862873 GGGAGTATCTTTTTGAACAAGTTGAAG 59.137 37.037 10.54 1.62 33.73 3.02
336 337 7.559897 AGGGAGTATCTTTTTGAACAAGTTGAA 59.440 33.333 10.54 0.00 33.73 2.69
337 338 7.060421 AGGGAGTATCTTTTTGAACAAGTTGA 58.940 34.615 10.54 0.00 33.73 3.18
338 339 7.229506 AGAGGGAGTATCTTTTTGAACAAGTTG 59.770 37.037 0.00 0.00 33.73 3.16
339 340 7.290813 AGAGGGAGTATCTTTTTGAACAAGTT 58.709 34.615 0.00 0.00 33.73 2.66
340 341 6.842676 AGAGGGAGTATCTTTTTGAACAAGT 58.157 36.000 0.00 0.00 33.73 3.16
341 342 9.454859 AATAGAGGGAGTATCTTTTTGAACAAG 57.545 33.333 0.00 0.00 33.73 3.16
342 343 9.807921 AAATAGAGGGAGTATCTTTTTGAACAA 57.192 29.630 0.00 0.00 30.11 2.83
343 344 9.449719 GAAATAGAGGGAGTATCTTTTTGAACA 57.550 33.333 0.00 0.00 31.02 3.18
344 345 9.449719 TGAAATAGAGGGAGTATCTTTTTGAAC 57.550 33.333 0.00 0.00 31.02 3.18
392 393 8.040132 AGTAGATAAGAACGACACTACACTAGT 58.960 37.037 0.00 0.00 40.28 2.57
393 394 8.422973 AGTAGATAAGAACGACACTACACTAG 57.577 38.462 0.00 0.00 34.56 2.57
394 395 9.307121 GTAGTAGATAAGAACGACACTACACTA 57.693 37.037 0.00 0.00 37.74 2.74
395 396 7.279758 GGTAGTAGATAAGAACGACACTACACT 59.720 40.741 10.20 0.00 38.93 3.55
396 397 7.405769 GGTAGTAGATAAGAACGACACTACAC 58.594 42.308 10.20 0.00 38.93 2.90
397 398 6.540189 GGGTAGTAGATAAGAACGACACTACA 59.460 42.308 10.20 0.00 38.93 2.74
398 399 6.017523 GGGGTAGTAGATAAGAACGACACTAC 60.018 46.154 0.00 0.00 37.32 2.73
399 400 6.058183 GGGGTAGTAGATAAGAACGACACTA 58.942 44.000 0.00 0.00 0.00 2.74
400 401 4.886489 GGGGTAGTAGATAAGAACGACACT 59.114 45.833 0.00 0.00 0.00 3.55
401 402 4.886489 AGGGGTAGTAGATAAGAACGACAC 59.114 45.833 0.00 0.00 0.00 3.67
402 403 5.121380 AGGGGTAGTAGATAAGAACGACA 57.879 43.478 0.00 0.00 0.00 4.35
403 404 8.854614 TTATAGGGGTAGTAGATAAGAACGAC 57.145 38.462 0.00 0.00 0.00 4.34
404 405 9.866655 TTTTATAGGGGTAGTAGATAAGAACGA 57.133 33.333 0.00 0.00 0.00 3.85
449 450 8.689061 CAGGTTTGAATGGATAAGATGATTTGA 58.311 33.333 0.00 0.00 0.00 2.69
459 460 5.951148 TCAGATTGCAGGTTTGAATGGATAA 59.049 36.000 0.00 0.00 0.00 1.75
535 536 3.030291 GGATTGTAACCCAATGGCATGA 58.970 45.455 0.00 0.00 43.87 3.07
839 851 4.803426 GTCCTGACGGCTCGGCTG 62.803 72.222 2.15 3.50 41.29 4.85
1144 1183 8.469200 AGTAGATCAGAGAAAGAAAGAGATGTG 58.531 37.037 0.00 0.00 0.00 3.21
1239 1291 5.059161 CACATACTCGGATCCAATGTGATT 58.941 41.667 26.88 9.90 46.57 2.57
1421 1786 3.127548 GCAAACACTGTGTCATGATAGGG 59.872 47.826 23.01 1.88 0.00 3.53
1614 2009 3.892284 ACACACACATCCAAAACACCTA 58.108 40.909 0.00 0.00 0.00 3.08
2336 2749 8.196771 AGCAAACAAGAAAATGACATCTAAACA 58.803 29.630 0.00 0.00 0.00 2.83
2598 3016 5.992217 GCATGGAGTTTTATAGTCGGAGATT 59.008 40.000 0.00 0.00 40.67 2.40
3064 3485 5.073144 GGGATTAGTGGGATTAGGATGTTGA 59.927 44.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.