Multiple sequence alignment - TraesCS4A01G017200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G017200 chr4A 100.000 3770 0 0 1 3770 11645568 11649337 0.000000e+00 6962
1 TraesCS4A01G017200 chr4B 82.137 1993 144 95 414 2334 570243468 570241616 0.000000e+00 1513
2 TraesCS4A01G017200 chr4B 84.211 1026 70 35 2481 3436 570241344 570240341 0.000000e+00 913
3 TraesCS4A01G017200 chr4B 86.275 153 14 4 3 149 570244101 570243950 3.900000e-35 159
4 TraesCS4A01G017200 chr4B 77.818 275 22 18 141 387 570243798 570243535 2.360000e-27 134
5 TraesCS4A01G017200 chr4D 87.803 1115 63 40 2333 3425 456088020 456086957 0.000000e+00 1238
6 TraesCS4A01G017200 chr4D 85.307 1157 64 44 734 1845 456089824 456088729 0.000000e+00 1098
7 TraesCS4A01G017200 chr4D 87.500 496 33 11 1842 2334 456088692 456088223 2.560000e-151 545
8 TraesCS4A01G017200 chr4D 83.037 619 41 17 8 565 456090537 456089922 1.560000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G017200 chr4A 11645568 11649337 3769 False 6962.00 6962 100.00000 1 3770 1 chr4A.!!$F1 3769
1 TraesCS4A01G017200 chr4B 570240341 570244101 3760 True 679.75 1513 82.61025 3 3436 4 chr4B.!!$R1 3433
2 TraesCS4A01G017200 chr4D 456086957 456090537 3580 True 846.00 1238 85.91175 8 3425 4 chr4D.!!$R1 3417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 327 0.035317 TCCGCAACTGTCAGCTGATT 59.965 50.0 21.47 7.53 0.00 2.57 F
829 1113 0.178990 AGTTTTGCAGAGACCACCCC 60.179 55.0 0.00 0.00 0.00 4.95 F
2149 2547 0.034767 ATGATGATGGGCCCTATGCG 60.035 55.0 25.70 0.00 42.61 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1375 0.037882 TGAACTCTCGCAAGCAGGAG 60.038 55.0 8.89 8.89 35.47 3.69 R
2558 3171 0.179094 TAGATAACCAGGTTGCGCGG 60.179 55.0 15.82 0.00 0.00 6.46 R
3084 3722 0.036952 AGATGGACGTGTTGGAGCTG 60.037 55.0 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 1.693606 CCCAACCAACAAAGCTCCATT 59.306 47.619 0.00 0.00 0.00 3.16
102 104 2.577059 CCTTGCCCGCGAAGTCTA 59.423 61.111 8.23 0.00 0.00 2.59
103 105 1.519455 CCTTGCCCGCGAAGTCTAG 60.519 63.158 8.23 0.00 0.00 2.43
104 106 2.125673 TTGCCCGCGAAGTCTAGC 60.126 61.111 8.23 0.00 0.00 3.42
105 107 2.835701 CTTGCCCGCGAAGTCTAGCA 62.836 60.000 8.23 1.54 0.00 3.49
108 110 1.141881 CCCGCGAAGTCTAGCACAT 59.858 57.895 8.23 0.00 0.00 3.21
121 128 7.147143 AGTCTAGCACATAGTATAATCCACG 57.853 40.000 0.00 0.00 32.85 4.94
124 131 3.000727 GCACATAGTATAATCCACGCCC 58.999 50.000 0.00 0.00 0.00 6.13
131 138 2.631160 ATAATCCACGCCCGAATCAA 57.369 45.000 0.00 0.00 0.00 2.57
132 139 1.658994 TAATCCACGCCCGAATCAAC 58.341 50.000 0.00 0.00 0.00 3.18
153 320 3.226242 AGGTGTCCGCAACTGTCA 58.774 55.556 0.00 0.00 41.90 3.58
155 322 2.607892 GGTGTCCGCAACTGTCAGC 61.608 63.158 0.00 0.00 0.00 4.26
160 327 0.035317 TCCGCAACTGTCAGCTGATT 59.965 50.000 21.47 7.53 0.00 2.57
161 328 1.275010 TCCGCAACTGTCAGCTGATTA 59.725 47.619 21.47 11.43 0.00 1.75
168 335 4.946478 ACTGTCAGCTGATTATACTCCC 57.054 45.455 21.47 3.84 0.00 4.30
199 366 6.179948 TTCTTATTCAGAACCGGACCTCCG 62.180 50.000 9.46 6.77 46.60 4.63
245 412 1.231958 GCACGAAACCCCAATCGACA 61.232 55.000 1.84 0.00 41.43 4.35
246 413 0.515564 CACGAAACCCCAATCGACAC 59.484 55.000 1.84 0.00 41.43 3.67
247 414 0.604511 ACGAAACCCCAATCGACACC 60.605 55.000 1.84 0.00 41.43 4.16
248 415 0.604243 CGAAACCCCAATCGACACCA 60.604 55.000 0.00 0.00 41.43 4.17
356 562 1.671379 GACCTTTCTCGCCGCCTTT 60.671 57.895 0.00 0.00 0.00 3.11
357 563 1.228154 ACCTTTCTCGCCGCCTTTT 60.228 52.632 0.00 0.00 0.00 2.27
358 564 1.235281 ACCTTTCTCGCCGCCTTTTC 61.235 55.000 0.00 0.00 0.00 2.29
359 565 1.132640 CTTTCTCGCCGCCTTTTCG 59.867 57.895 0.00 0.00 0.00 3.46
400 641 2.919228 AGAAAGAAAGCCGTGTGAAGT 58.081 42.857 0.00 0.00 0.00 3.01
535 808 3.788766 CGCACAACGGGCAGTAGC 61.789 66.667 0.00 0.00 38.44 3.58
548 825 1.730501 CAGTAGCACCACATCCACAG 58.269 55.000 0.00 0.00 0.00 3.66
553 830 1.301637 CACCACATCCACAGCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
555 832 2.382746 CCACATCCACAGCGTCACG 61.383 63.158 0.00 0.00 0.00 4.35
582 859 1.344942 GCGGCCATAGACTAATCGCG 61.345 60.000 2.24 0.00 32.72 5.87
584 861 1.014564 GGCCATAGACTAATCGCGGC 61.015 60.000 6.13 0.00 37.49 6.53
592 869 0.738389 ACTAATCGCGGCCCAAATTG 59.262 50.000 6.13 0.00 0.00 2.32
594 871 2.010582 TAATCGCGGCCCAAATTGCC 62.011 55.000 6.13 0.00 45.70 4.52
604 881 4.206477 GCCCAAATTGCCAAGTTATTCT 57.794 40.909 0.00 0.00 0.00 2.40
606 883 5.351458 GCCCAAATTGCCAAGTTATTCTAG 58.649 41.667 0.00 0.00 0.00 2.43
607 884 5.127031 GCCCAAATTGCCAAGTTATTCTAGA 59.873 40.000 0.00 0.00 0.00 2.43
608 885 6.564328 CCCAAATTGCCAAGTTATTCTAGAC 58.436 40.000 0.00 0.00 0.00 2.59
611 888 7.253422 CAAATTGCCAAGTTATTCTAGACAGG 58.747 38.462 0.00 0.00 0.00 4.00
612 889 4.487714 TGCCAAGTTATTCTAGACAGGG 57.512 45.455 0.00 0.00 0.00 4.45
613 890 3.199946 TGCCAAGTTATTCTAGACAGGGG 59.800 47.826 0.00 0.00 0.00 4.79
614 891 3.454812 GCCAAGTTATTCTAGACAGGGGA 59.545 47.826 0.00 0.00 0.00 4.81
616 893 4.717280 CCAAGTTATTCTAGACAGGGGAGT 59.283 45.833 0.00 0.00 0.00 3.85
617 894 5.395768 CCAAGTTATTCTAGACAGGGGAGTG 60.396 48.000 0.00 0.00 0.00 3.51
618 895 5.208294 AGTTATTCTAGACAGGGGAGTGA 57.792 43.478 0.00 0.00 0.00 3.41
619 896 5.782925 AGTTATTCTAGACAGGGGAGTGAT 58.217 41.667 0.00 0.00 0.00 3.06
620 897 6.206042 AGTTATTCTAGACAGGGGAGTGATT 58.794 40.000 0.00 0.00 0.00 2.57
621 898 7.363031 AGTTATTCTAGACAGGGGAGTGATTA 58.637 38.462 0.00 0.00 0.00 1.75
622 899 7.507616 AGTTATTCTAGACAGGGGAGTGATTAG 59.492 40.741 0.00 0.00 0.00 1.73
623 900 3.567397 TCTAGACAGGGGAGTGATTAGC 58.433 50.000 0.00 0.00 0.00 3.09
626 903 1.227674 CAGGGGAGTGATTAGCGGC 60.228 63.158 0.00 0.00 0.00 6.53
636 913 3.400599 ATTAGCGGCGGAGGGGTTG 62.401 63.158 9.78 0.00 0.00 3.77
648 925 4.434483 GGGTTGGTTAAGCCCTGG 57.566 61.111 1.51 0.00 46.40 4.45
695 978 2.311287 CTGATTACCAGCTGGGGGT 58.689 57.895 35.42 20.50 42.91 4.95
701 984 3.889692 CCAGCTGGGGGTGTGTGT 61.890 66.667 26.14 0.00 39.09 3.72
702 985 2.595463 CAGCTGGGGGTGTGTGTG 60.595 66.667 5.57 0.00 36.34 3.82
703 986 2.772191 AGCTGGGGGTGTGTGTGA 60.772 61.111 0.00 0.00 0.00 3.58
704 987 2.194597 GCTGGGGGTGTGTGTGAA 59.805 61.111 0.00 0.00 0.00 3.18
707 990 0.961019 CTGGGGGTGTGTGTGAATTG 59.039 55.000 0.00 0.00 0.00 2.32
708 991 1.112315 TGGGGGTGTGTGTGAATTGC 61.112 55.000 0.00 0.00 0.00 3.56
709 992 1.112315 GGGGGTGTGTGTGAATTGCA 61.112 55.000 0.00 0.00 0.00 4.08
710 993 0.749649 GGGGTGTGTGTGAATTGCAA 59.250 50.000 0.00 0.00 0.00 4.08
711 994 1.137872 GGGGTGTGTGTGAATTGCAAA 59.862 47.619 1.71 0.00 0.00 3.68
712 995 2.419297 GGGGTGTGTGTGAATTGCAAAA 60.419 45.455 1.71 0.00 0.00 2.44
713 996 3.265791 GGGTGTGTGTGAATTGCAAAAA 58.734 40.909 1.71 0.00 0.00 1.94
714 997 3.309410 GGGTGTGTGTGAATTGCAAAAAG 59.691 43.478 1.71 0.00 0.00 2.27
715 998 3.932089 GGTGTGTGTGAATTGCAAAAAGT 59.068 39.130 1.71 0.00 0.00 2.66
716 999 4.391523 GGTGTGTGTGAATTGCAAAAAGTT 59.608 37.500 1.71 0.00 0.00 2.66
717 1000 5.106752 GGTGTGTGTGAATTGCAAAAAGTTT 60.107 36.000 1.71 0.00 0.00 2.66
718 1001 5.789512 GTGTGTGTGAATTGCAAAAAGTTTG 59.210 36.000 1.71 0.00 0.00 2.93
719 1002 5.106791 TGTGTGTGAATTGCAAAAAGTTTGG 60.107 36.000 1.71 0.00 0.00 3.28
720 1003 4.999950 TGTGTGAATTGCAAAAAGTTTGGT 59.000 33.333 1.71 0.00 0.00 3.67
721 1004 5.471456 TGTGTGAATTGCAAAAAGTTTGGTT 59.529 32.000 1.71 0.00 0.00 3.67
722 1005 6.020984 GTGTGAATTGCAAAAAGTTTGGTTC 58.979 36.000 1.71 0.00 0.00 3.62
723 1006 5.936956 TGTGAATTGCAAAAAGTTTGGTTCT 59.063 32.000 1.71 0.00 0.00 3.01
724 1007 6.429385 TGTGAATTGCAAAAAGTTTGGTTCTT 59.571 30.769 1.71 0.00 0.00 2.52
725 1008 7.040823 TGTGAATTGCAAAAAGTTTGGTTCTTT 60.041 29.630 1.71 0.00 36.81 2.52
726 1009 7.807433 GTGAATTGCAAAAAGTTTGGTTCTTTT 59.193 29.630 1.71 0.00 43.86 2.27
774 1057 2.107141 GCCCCGTCGATCTCCTTG 59.893 66.667 0.00 0.00 0.00 3.61
778 1061 1.066587 CCGTCGATCTCCTTGCTCC 59.933 63.158 0.00 0.00 0.00 4.70
789 1072 4.329545 TTGCTCCGCCCAGTCACC 62.330 66.667 0.00 0.00 0.00 4.02
797 1080 3.068881 CCCAGTCACCGTCCACAT 58.931 61.111 0.00 0.00 0.00 3.21
809 1093 2.682856 CCGTCCACATACATTTCCTTGG 59.317 50.000 0.00 0.00 0.00 3.61
817 1101 5.634859 CACATACATTTCCTTGGAGTTTTGC 59.365 40.000 0.00 0.00 0.00 3.68
818 1102 5.304101 ACATACATTTCCTTGGAGTTTTGCA 59.696 36.000 0.00 0.00 0.00 4.08
819 1103 4.326504 ACATTTCCTTGGAGTTTTGCAG 57.673 40.909 0.00 0.00 0.00 4.41
820 1104 3.960102 ACATTTCCTTGGAGTTTTGCAGA 59.040 39.130 0.00 0.00 0.00 4.26
821 1105 4.038402 ACATTTCCTTGGAGTTTTGCAGAG 59.962 41.667 0.00 0.00 0.00 3.35
827 1111 1.239347 GGAGTTTTGCAGAGACCACC 58.761 55.000 0.00 0.00 0.00 4.61
828 1112 1.239347 GAGTTTTGCAGAGACCACCC 58.761 55.000 0.00 0.00 0.00 4.61
829 1113 0.178990 AGTTTTGCAGAGACCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
830 1114 0.178990 GTTTTGCAGAGACCACCCCT 60.179 55.000 0.00 0.00 0.00 4.79
833 1117 3.403558 GCAGAGACCACCCCTCCC 61.404 72.222 0.00 0.00 0.00 4.30
834 1118 2.452114 CAGAGACCACCCCTCCCT 59.548 66.667 0.00 0.00 0.00 4.20
840 1124 4.825679 CCACCCCTCCCTCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
841 1125 3.700350 CACCCCTCCCTCCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
842 1126 3.369388 ACCCCTCCCTCCCTCCTC 61.369 72.222 0.00 0.00 0.00 3.71
859 1143 1.000731 CCTCTCTCATCCGATCCAAGC 59.999 57.143 0.00 0.00 0.00 4.01
860 1144 1.962807 CTCTCTCATCCGATCCAAGCT 59.037 52.381 0.00 0.00 0.00 3.74
861 1145 3.153130 CTCTCTCATCCGATCCAAGCTA 58.847 50.000 0.00 0.00 0.00 3.32
862 1146 2.887783 TCTCTCATCCGATCCAAGCTAC 59.112 50.000 0.00 0.00 0.00 3.58
863 1147 1.609072 TCTCATCCGATCCAAGCTACG 59.391 52.381 0.00 0.00 0.00 3.51
864 1148 1.609072 CTCATCCGATCCAAGCTACGA 59.391 52.381 0.00 0.00 0.00 3.43
909 1193 1.694133 GGTGCTCCATCTAGCCAGCT 61.694 60.000 0.00 0.00 42.05 4.24
913 1197 1.946081 GCTCCATCTAGCCAGCTTTTC 59.054 52.381 0.00 0.00 36.45 2.29
1040 1328 0.259938 GAGGTGAGCCCAATTCCCAT 59.740 55.000 0.00 0.00 34.66 4.00
1072 1360 3.788766 CCTTCCGGCTTTCGTGCG 61.789 66.667 0.00 0.00 37.11 5.34
1086 1375 0.661780 CGTGCGGAGAGATCGAATCC 60.662 60.000 0.00 4.35 0.00 3.01
1087 1376 0.671251 GTGCGGAGAGATCGAATCCT 59.329 55.000 10.81 0.00 0.00 3.24
1088 1377 0.955178 TGCGGAGAGATCGAATCCTC 59.045 55.000 10.81 0.00 0.00 3.71
1089 1378 0.242555 GCGGAGAGATCGAATCCTCC 59.757 60.000 16.03 16.03 40.44 4.30
1090 1379 1.904287 CGGAGAGATCGAATCCTCCT 58.096 55.000 20.66 2.85 41.07 3.69
1091 1380 1.539388 CGGAGAGATCGAATCCTCCTG 59.461 57.143 20.66 13.75 41.07 3.86
1092 1381 1.272212 GGAGAGATCGAATCCTCCTGC 59.728 57.143 17.77 6.37 40.56 4.85
1093 1382 2.238521 GAGAGATCGAATCCTCCTGCT 58.761 52.381 8.59 0.00 0.00 4.24
1094 1383 2.627699 GAGAGATCGAATCCTCCTGCTT 59.372 50.000 8.59 0.00 0.00 3.91
1095 1384 2.364970 AGAGATCGAATCCTCCTGCTTG 59.635 50.000 8.59 0.00 0.00 4.01
1096 1385 1.202627 AGATCGAATCCTCCTGCTTGC 60.203 52.381 0.00 0.00 0.00 4.01
1097 1386 0.531532 ATCGAATCCTCCTGCTTGCG 60.532 55.000 0.00 0.00 0.00 4.85
1098 1387 1.153568 CGAATCCTCCTGCTTGCGA 60.154 57.895 0.00 0.00 0.00 5.10
1099 1388 1.150567 CGAATCCTCCTGCTTGCGAG 61.151 60.000 0.00 0.00 0.00 5.03
1100 1389 0.176680 GAATCCTCCTGCTTGCGAGA 59.823 55.000 4.70 0.00 0.00 4.04
1101 1390 0.177604 AATCCTCCTGCTTGCGAGAG 59.822 55.000 4.70 0.00 0.00 3.20
1102 1391 0.975040 ATCCTCCTGCTTGCGAGAGT 60.975 55.000 4.70 0.00 0.00 3.24
1103 1392 1.188219 TCCTCCTGCTTGCGAGAGTT 61.188 55.000 4.70 0.00 0.00 3.01
1122 1420 4.089361 AGTTCATCCATGGGTTTCCTTTC 58.911 43.478 13.02 0.00 0.00 2.62
1142 1440 0.744874 CCTTCCTCGCGATCTGGTTA 59.255 55.000 10.36 0.00 0.00 2.85
1145 1443 1.399714 TCCTCGCGATCTGGTTATGT 58.600 50.000 10.36 0.00 0.00 2.29
1155 1453 1.702401 TCTGGTTATGTGGTGGCTTGA 59.298 47.619 0.00 0.00 0.00 3.02
1166 1468 4.701651 TGTGGTGGCTTGATAGAAGATTTG 59.298 41.667 0.00 0.00 0.00 2.32
1376 1683 3.982241 GCCCACCACAAGCAGCAC 61.982 66.667 0.00 0.00 0.00 4.40
1478 1800 2.047655 TCGCCCACCGTAAGCAAG 60.048 61.111 0.00 0.00 38.35 4.01
1484 1806 1.738099 CACCGTAAGCAAGCTCGCT 60.738 57.895 0.00 0.00 46.67 4.93
1485 1807 1.446272 ACCGTAAGCAAGCTCGCTC 60.446 57.895 0.00 0.00 42.89 5.03
1486 1808 2.508891 CCGTAAGCAAGCTCGCTCG 61.509 63.158 0.00 0.00 42.89 5.03
1487 1809 2.698020 GTAAGCAAGCTCGCTCGC 59.302 61.111 0.00 0.00 42.89 5.03
1488 1810 1.807573 GTAAGCAAGCTCGCTCGCT 60.808 57.895 0.00 0.00 42.89 4.93
1489 1811 1.517257 TAAGCAAGCTCGCTCGCTC 60.517 57.895 0.00 0.00 42.89 5.03
1490 1812 1.938657 TAAGCAAGCTCGCTCGCTCT 61.939 55.000 0.00 0.00 42.89 4.09
1491 1813 2.778309 AAGCAAGCTCGCTCGCTCTT 62.778 55.000 0.00 0.00 42.89 2.85
1504 1826 1.261238 CGCTCTTCTTCCCTCCCTGT 61.261 60.000 0.00 0.00 0.00 4.00
1519 1841 1.940613 CCCTGTTGCTTACTATTCGGC 59.059 52.381 0.00 0.00 0.00 5.54
1520 1842 1.940613 CCTGTTGCTTACTATTCGGCC 59.059 52.381 0.00 0.00 0.00 6.13
1540 1862 4.816925 GGCCTGGTAGTTTGATAAGTCATC 59.183 45.833 0.00 0.00 33.56 2.92
1545 1867 8.141909 CCTGGTAGTTTGATAAGTCATCGATTA 58.858 37.037 0.00 0.00 36.33 1.75
1571 1894 1.758592 CCCAACGGTCAAGGAGGAA 59.241 57.895 0.00 0.00 0.00 3.36
1576 1899 0.546747 ACGGTCAAGGAGGAATCCCA 60.547 55.000 0.00 0.00 33.88 4.37
1579 1902 1.685148 GTCAAGGAGGAATCCCATGC 58.315 55.000 0.00 0.00 33.88 4.06
1587 1910 1.329913 GGAATCCCATGCCCACAACC 61.330 60.000 0.00 0.00 0.00 3.77
1591 1914 0.105246 TCCCATGCCCACAACCTTTT 60.105 50.000 0.00 0.00 0.00 2.27
1592 1915 0.321346 CCCATGCCCACAACCTTTTC 59.679 55.000 0.00 0.00 0.00 2.29
1593 1916 1.341080 CCATGCCCACAACCTTTTCT 58.659 50.000 0.00 0.00 0.00 2.52
1595 1918 1.273327 CATGCCCACAACCTTTTCTCC 59.727 52.381 0.00 0.00 0.00 3.71
1596 1919 0.821711 TGCCCACAACCTTTTCTCCG 60.822 55.000 0.00 0.00 0.00 4.63
1597 1920 1.956802 CCCACAACCTTTTCTCCGC 59.043 57.895 0.00 0.00 0.00 5.54
1598 1921 0.537371 CCCACAACCTTTTCTCCGCT 60.537 55.000 0.00 0.00 0.00 5.52
1600 1923 1.266989 CCACAACCTTTTCTCCGCTTC 59.733 52.381 0.00 0.00 0.00 3.86
1602 1925 1.226746 CAACCTTTTCTCCGCTTCGT 58.773 50.000 0.00 0.00 0.00 3.85
1603 1926 1.194772 CAACCTTTTCTCCGCTTCGTC 59.805 52.381 0.00 0.00 0.00 4.20
1650 1973 3.689649 ACTTTTCTCCATTTCGATTCGGG 59.310 43.478 6.18 0.00 0.00 5.14
1656 1979 2.080693 CCATTTCGATTCGGGTGTTCA 58.919 47.619 6.18 0.00 0.00 3.18
1672 1995 1.207329 GTTCATAGCTGACCCGGAACT 59.793 52.381 0.73 0.00 33.65 3.01
1673 1996 2.429610 GTTCATAGCTGACCCGGAACTA 59.570 50.000 0.73 0.00 33.65 2.24
1674 1997 2.307768 TCATAGCTGACCCGGAACTAG 58.692 52.381 0.73 0.00 0.00 2.57
1703 2029 4.333926 GCATAAAGATTCGGACTTTCTGCT 59.666 41.667 20.47 1.01 45.28 4.24
1712 2038 4.232221 TCGGACTTTCTGCTTTAACTACG 58.768 43.478 0.00 0.00 0.00 3.51
1713 2039 3.985925 CGGACTTTCTGCTTTAACTACGT 59.014 43.478 0.00 0.00 0.00 3.57
1714 2040 5.048782 TCGGACTTTCTGCTTTAACTACGTA 60.049 40.000 0.00 0.00 0.00 3.57
1715 2041 5.060200 CGGACTTTCTGCTTTAACTACGTAC 59.940 44.000 0.00 0.00 0.00 3.67
1716 2042 6.155136 GGACTTTCTGCTTTAACTACGTACT 58.845 40.000 0.00 0.00 0.00 2.73
1717 2043 7.308435 GGACTTTCTGCTTTAACTACGTACTA 58.692 38.462 0.00 0.00 0.00 1.82
1718 2044 7.484324 GGACTTTCTGCTTTAACTACGTACTAG 59.516 40.741 0.00 0.00 0.00 2.57
1735 2063 8.498054 ACGTACTAGTATACTTTCAGTAAGCA 57.502 34.615 19.04 0.92 37.37 3.91
1736 2064 8.950210 ACGTACTAGTATACTTTCAGTAAGCAA 58.050 33.333 19.04 0.64 37.37 3.91
1740 2068 8.033626 ACTAGTATACTTTCAGTAAGCAACACC 58.966 37.037 11.40 0.00 37.37 4.16
1741 2069 6.171213 AGTATACTTTCAGTAAGCAACACCC 58.829 40.000 0.00 0.00 37.37 4.61
1742 2070 2.218603 ACTTTCAGTAAGCAACACCCG 58.781 47.619 0.00 0.00 37.37 5.28
1743 2071 2.158871 ACTTTCAGTAAGCAACACCCGA 60.159 45.455 0.00 0.00 37.37 5.14
1744 2072 2.623878 TTCAGTAAGCAACACCCGAA 57.376 45.000 0.00 0.00 0.00 4.30
1745 2073 2.851263 TCAGTAAGCAACACCCGAAT 57.149 45.000 0.00 0.00 0.00 3.34
1746 2074 2.695359 TCAGTAAGCAACACCCGAATC 58.305 47.619 0.00 0.00 0.00 2.52
1748 2076 1.274167 AGTAAGCAACACCCGAATCGA 59.726 47.619 3.36 0.00 0.00 3.59
1749 2077 2.093658 AGTAAGCAACACCCGAATCGAT 60.094 45.455 3.36 0.00 0.00 3.59
1750 2078 1.086696 AAGCAACACCCGAATCGATG 58.913 50.000 3.36 4.70 0.00 3.84
1751 2079 0.249120 AGCAACACCCGAATCGATGA 59.751 50.000 3.36 0.00 0.00 2.92
1752 2080 1.083489 GCAACACCCGAATCGATGAA 58.917 50.000 3.36 0.00 0.00 2.57
1753 2081 1.202031 GCAACACCCGAATCGATGAAC 60.202 52.381 3.36 0.00 0.00 3.18
1769 2099 7.796958 TCGATGAACAGCAGTATAATATTCG 57.203 36.000 0.00 0.00 0.00 3.34
1836 2184 2.488937 TCGTACTCCAACGCACTGATAA 59.511 45.455 0.00 0.00 42.56 1.75
1839 2187 4.328983 CGTACTCCAACGCACTGATAATTT 59.671 41.667 0.00 0.00 35.87 1.82
1840 2188 4.685169 ACTCCAACGCACTGATAATTTG 57.315 40.909 0.00 0.00 0.00 2.32
1845 2234 2.006888 ACGCACTGATAATTTGACCGG 58.993 47.619 0.00 0.00 0.00 5.28
1918 2307 6.484977 ACTTCAAAGAAGTGCTAGGAAAAGAG 59.515 38.462 11.28 0.00 0.00 2.85
1926 2315 5.546526 AGTGCTAGGAAAAGAGAGAACAAG 58.453 41.667 0.00 0.00 0.00 3.16
1957 2346 0.728466 GACTCTGTGTCACGGCGTAC 60.728 60.000 14.22 8.58 44.73 3.67
1959 2348 0.109272 CTCTGTGTCACGGCGTACAT 60.109 55.000 14.22 0.00 0.00 2.29
1961 2350 0.666274 CTGTGTCACGGCGTACATGT 60.666 55.000 14.22 2.69 0.00 3.21
1964 2353 0.946700 TGTCACGGCGTACATGTTGG 60.947 55.000 14.22 0.00 0.00 3.77
1966 2355 0.602060 TCACGGCGTACATGTTGGTA 59.398 50.000 14.22 0.00 0.00 3.25
2040 2432 1.559682 AGCCTGTTATGATGAACCGGT 59.440 47.619 0.00 0.00 36.40 5.28
2050 2442 3.283751 TGATGAACCGGTGAAAACAAGT 58.716 40.909 8.52 0.00 0.00 3.16
2051 2443 4.452825 TGATGAACCGGTGAAAACAAGTA 58.547 39.130 8.52 0.00 0.00 2.24
2052 2444 4.513692 TGATGAACCGGTGAAAACAAGTAG 59.486 41.667 8.52 0.00 0.00 2.57
2053 2445 4.139859 TGAACCGGTGAAAACAAGTAGA 57.860 40.909 8.52 0.00 0.00 2.59
2054 2446 4.124238 TGAACCGGTGAAAACAAGTAGAG 58.876 43.478 8.52 0.00 0.00 2.43
2055 2447 3.832615 ACCGGTGAAAACAAGTAGAGT 57.167 42.857 6.12 0.00 0.00 3.24
2056 2448 4.942761 ACCGGTGAAAACAAGTAGAGTA 57.057 40.909 6.12 0.00 0.00 2.59
2057 2449 4.625028 ACCGGTGAAAACAAGTAGAGTAC 58.375 43.478 6.12 0.00 0.00 2.73
2058 2450 3.671928 CCGGTGAAAACAAGTAGAGTACG 59.328 47.826 0.00 0.00 0.00 3.67
2059 2451 4.293415 CGGTGAAAACAAGTAGAGTACGT 58.707 43.478 0.00 0.00 0.00 3.57
2060 2452 5.451908 CGGTGAAAACAAGTAGAGTACGTA 58.548 41.667 0.00 0.00 0.00 3.57
2061 2453 5.340667 CGGTGAAAACAAGTAGAGTACGTAC 59.659 44.000 18.10 18.10 0.00 3.67
2108 2503 3.721087 CCTCTGTTTCAGGGGTAACAT 57.279 47.619 7.45 0.00 46.42 2.71
2109 2504 3.610911 CCTCTGTTTCAGGGGTAACATC 58.389 50.000 7.45 0.00 46.42 3.06
2110 2505 3.009033 CCTCTGTTTCAGGGGTAACATCA 59.991 47.826 7.45 0.00 46.42 3.07
2112 2507 5.255397 TCTGTTTCAGGGGTAACATCATT 57.745 39.130 0.00 0.00 34.41 2.57
2113 2508 5.253330 TCTGTTTCAGGGGTAACATCATTC 58.747 41.667 0.00 0.00 34.41 2.67
2149 2547 0.034767 ATGATGATGGGCCCTATGCG 60.035 55.000 25.70 0.00 42.61 4.73
2157 2555 1.202758 TGGGCCCTATGCGATGTTTAG 60.203 52.381 25.70 0.00 42.61 1.85
2214 2612 3.961408 AGTCGGTTCAGCTGATATAGGTT 59.039 43.478 19.04 0.00 34.17 3.50
2268 2674 3.129287 CCACTCCAACCATTTGCATCTAC 59.871 47.826 0.00 0.00 0.00 2.59
2270 2676 5.185454 CACTCCAACCATTTGCATCTACTA 58.815 41.667 0.00 0.00 0.00 1.82
2271 2677 5.295292 CACTCCAACCATTTGCATCTACTAG 59.705 44.000 0.00 0.00 0.00 2.57
2272 2678 5.045578 ACTCCAACCATTTGCATCTACTAGT 60.046 40.000 0.00 0.00 0.00 2.57
2273 2679 5.185454 TCCAACCATTTGCATCTACTAGTG 58.815 41.667 5.39 0.00 0.00 2.74
2274 2680 4.201950 CCAACCATTTGCATCTACTAGTGC 60.202 45.833 5.39 0.26 41.61 4.40
2275 2681 4.494091 ACCATTTGCATCTACTAGTGCT 57.506 40.909 5.39 0.00 41.78 4.40
2309 2715 1.602888 AGCTGCTTGGCAAGGACAG 60.603 57.895 27.25 24.71 38.41 3.51
2379 2992 4.227864 AGGATTGAAGAAGCCGAGAATT 57.772 40.909 0.00 0.00 42.94 2.17
2380 2993 5.359194 AGGATTGAAGAAGCCGAGAATTA 57.641 39.130 0.00 0.00 42.94 1.40
2381 2994 5.363939 AGGATTGAAGAAGCCGAGAATTAG 58.636 41.667 0.00 0.00 42.94 1.73
2397 3010 5.608449 AGAATTAGTAGTTATCAACGGCCC 58.392 41.667 0.00 0.00 36.23 5.80
2428 3041 0.890542 CTTGCTACAAGCTGGTGCCA 60.891 55.000 3.21 0.00 42.97 4.92
2457 3070 5.538433 TGGCCAAATATACATTAGCTTTCCC 59.462 40.000 0.61 0.00 0.00 3.97
2458 3071 5.775195 GGCCAAATATACATTAGCTTTCCCT 59.225 40.000 0.00 0.00 0.00 4.20
2459 3072 6.267699 GGCCAAATATACATTAGCTTTCCCTT 59.732 38.462 0.00 0.00 0.00 3.95
2460 3073 7.202001 GGCCAAATATACATTAGCTTTCCCTTT 60.202 37.037 0.00 0.00 0.00 3.11
2461 3074 7.867909 GCCAAATATACATTAGCTTTCCCTTTC 59.132 37.037 0.00 0.00 0.00 2.62
2462 3075 8.360390 CCAAATATACATTAGCTTTCCCTTTCC 58.640 37.037 0.00 0.00 0.00 3.13
2507 3120 1.165270 CACCGAACCTTCATCCAACC 58.835 55.000 0.00 0.00 0.00 3.77
2516 3129 3.763897 ACCTTCATCCAACCATAGTTTGC 59.236 43.478 0.00 0.00 32.45 3.68
2574 3187 3.131478 GCCGCGCAACCTGGTTAT 61.131 61.111 12.53 0.00 0.00 1.89
2614 3227 9.710900 AAAGAAGGGAAAATAAAGTTATGCTTG 57.289 29.630 0.00 0.00 37.52 4.01
2630 3253 0.236711 CTTGAACTTCAGCTGTGGCG 59.763 55.000 14.67 3.33 44.37 5.69
2645 3272 1.264288 GTGGCGTGCTATATTCTTGCC 59.736 52.381 0.00 0.00 41.33 4.52
2674 3305 3.497405 CCTGGCTGATGGCTACATGTAAT 60.497 47.826 7.06 0.00 41.46 1.89
2675 3306 3.479489 TGGCTGATGGCTACATGTAATG 58.521 45.455 7.06 0.00 45.52 1.90
2775 3406 1.372087 GCATCAAGGCCTGAAGACCG 61.372 60.000 5.69 1.59 37.67 4.79
2868 3499 2.483538 GGTGTTTGGTCAAGCTTGCAAT 60.484 45.455 21.99 0.00 0.00 3.56
2869 3500 2.540931 GTGTTTGGTCAAGCTTGCAATG 59.459 45.455 21.99 0.00 0.00 2.82
2870 3501 2.429971 TGTTTGGTCAAGCTTGCAATGA 59.570 40.909 21.99 0.51 0.00 2.57
2871 3502 3.118847 TGTTTGGTCAAGCTTGCAATGAA 60.119 39.130 21.99 9.36 0.00 2.57
2872 3503 2.798976 TGGTCAAGCTTGCAATGAAC 57.201 45.000 21.99 12.86 0.00 3.18
2873 3504 1.001487 TGGTCAAGCTTGCAATGAACG 60.001 47.619 21.99 0.00 33.46 3.95
2896 3527 7.349711 ACGAAATGTGTAATATAATTCCACGC 58.650 34.615 0.00 0.00 0.00 5.34
2921 3552 3.057033 TGACGCTACCTGTTTAGAGAACC 60.057 47.826 0.00 0.00 0.00 3.62
3017 3648 2.943690 CTGAGAGAAATGGCATCTGGTG 59.056 50.000 0.00 0.00 0.00 4.17
3025 3656 5.533903 AGAAATGGCATCTGGTGTGATAATC 59.466 40.000 0.00 0.00 0.00 1.75
3037 3668 5.803020 GTGTGATAATCTTGAACACCCTC 57.197 43.478 0.00 0.00 36.07 4.30
3043 3681 2.455674 TCTTGAACACCCTCACATCG 57.544 50.000 0.00 0.00 0.00 3.84
3083 3721 1.550130 CGAGCCACCAGGAACCCTAA 61.550 60.000 0.00 0.00 36.89 2.69
3084 3722 0.035343 GAGCCACCAGGAACCCTAAC 60.035 60.000 0.00 0.00 36.89 2.34
3085 3723 0.770557 AGCCACCAGGAACCCTAACA 60.771 55.000 0.00 0.00 36.89 2.41
3086 3724 0.322546 GCCACCAGGAACCCTAACAG 60.323 60.000 0.00 0.00 36.89 3.16
3087 3725 0.322546 CCACCAGGAACCCTAACAGC 60.323 60.000 0.00 0.00 36.89 4.40
3088 3726 0.693049 CACCAGGAACCCTAACAGCT 59.307 55.000 0.00 0.00 29.64 4.24
3103 3761 0.036952 CAGCTCCAACACGTCCATCT 60.037 55.000 0.00 0.00 0.00 2.90
3121 3782 7.079451 TCCATCTTGGAAGAAAGTAAAGAGT 57.921 36.000 0.00 0.00 45.00 3.24
3145 3806 0.804989 CCCCTAGCTTCAAGCAAACG 59.195 55.000 13.10 0.00 45.56 3.60
3167 3828 3.441922 GTCCAATTTCTCCTCTGCTTTCC 59.558 47.826 0.00 0.00 0.00 3.13
3168 3829 2.757314 CCAATTTCTCCTCTGCTTTCCC 59.243 50.000 0.00 0.00 0.00 3.97
3171 3832 0.987294 TTCTCCTCTGCTTTCCCCAG 59.013 55.000 0.00 0.00 0.00 4.45
3175 3836 1.301293 CTCTGCTTTCCCCAGGACC 59.699 63.158 0.00 0.00 0.00 4.46
3177 3838 1.001641 CTGCTTTCCCCAGGACCAG 60.002 63.158 0.00 0.00 0.00 4.00
3204 3885 3.376859 TGAAACTGCGTCATCAAACAACT 59.623 39.130 0.00 0.00 0.00 3.16
3216 3897 7.413767 CGTCATCAAACAACTCAATCTCATGAT 60.414 37.037 0.00 0.00 33.70 2.45
3280 3961 2.798283 CGACGACCTTTGCAAAGACTTA 59.202 45.455 35.25 3.26 38.28 2.24
3282 3963 4.666655 CGACGACCTTTGCAAAGACTTATG 60.667 45.833 35.25 21.41 38.28 1.90
3283 3964 4.385825 ACGACCTTTGCAAAGACTTATGA 58.614 39.130 35.25 0.90 38.28 2.15
3284 3965 4.452455 ACGACCTTTGCAAAGACTTATGAG 59.548 41.667 35.25 20.12 38.28 2.90
3285 3966 4.452455 CGACCTTTGCAAAGACTTATGAGT 59.548 41.667 35.25 22.84 38.28 3.41
3286 3967 5.637810 CGACCTTTGCAAAGACTTATGAGTA 59.362 40.000 35.25 0.00 38.28 2.59
3287 3968 6.313905 CGACCTTTGCAAAGACTTATGAGTAT 59.686 38.462 35.25 6.17 38.28 2.12
3288 3969 7.491372 CGACCTTTGCAAAGACTTATGAGTATA 59.509 37.037 35.25 0.00 38.28 1.47
3289 3970 9.331282 GACCTTTGCAAAGACTTATGAGTATAT 57.669 33.333 35.25 5.19 38.28 0.86
3290 3971 9.686683 ACCTTTGCAAAGACTTATGAGTATATT 57.313 29.630 35.25 2.16 38.28 1.28
3363 4044 2.040544 GGGCCACCACGAATCTGTG 61.041 63.158 4.39 0.00 39.60 3.66
3386 4068 4.866486 GCTTTGTAGCATTTCATCAAAGGG 59.134 41.667 14.66 0.00 46.95 3.95
3437 4123 3.153024 TTCCTTTGGGAAGCGATCG 57.847 52.632 11.69 11.69 45.72 3.69
3438 4124 0.323629 TTCCTTTGGGAAGCGATCGT 59.676 50.000 17.81 0.00 45.72 3.73
3439 4125 0.323629 TCCTTTGGGAAGCGATCGTT 59.676 50.000 17.81 8.05 38.93 3.85
3440 4126 0.727398 CCTTTGGGAAGCGATCGTTC 59.273 55.000 17.81 17.26 33.58 3.95
3441 4127 2.915220 CCTTTGGGAAGCGATCGTTCG 61.915 57.143 17.81 11.46 40.82 3.95
3452 4138 2.582959 ATCGTTCGCTTCGATCAGC 58.417 52.632 0.00 0.00 43.12 4.26
3453 4139 0.101399 ATCGTTCGCTTCGATCAGCT 59.899 50.000 7.47 0.00 43.12 4.24
3454 4140 0.109272 TCGTTCGCTTCGATCAGCTT 60.109 50.000 7.47 0.00 37.68 3.74
3455 4141 0.024238 CGTTCGCTTCGATCAGCTTG 59.976 55.000 7.47 0.00 37.68 4.01
3456 4142 1.071605 GTTCGCTTCGATCAGCTTGT 58.928 50.000 7.47 0.00 37.68 3.16
3457 4143 2.259618 GTTCGCTTCGATCAGCTTGTA 58.740 47.619 7.47 0.00 37.68 2.41
3458 4144 2.194800 TCGCTTCGATCAGCTTGTAG 57.805 50.000 7.47 0.00 37.68 2.74
3459 4145 0.574454 CGCTTCGATCAGCTTGTAGC 59.426 55.000 7.47 0.00 42.84 3.58
3469 4155 4.077184 CTTGTAGCGCGACCCCCA 62.077 66.667 18.26 0.00 0.00 4.96
3470 4156 3.599285 CTTGTAGCGCGACCCCCAA 62.599 63.158 18.26 4.74 0.00 4.12
3471 4157 2.869503 CTTGTAGCGCGACCCCCAAT 62.870 60.000 18.26 0.00 0.00 3.16
3472 4158 2.895372 GTAGCGCGACCCCCAATG 60.895 66.667 12.10 0.00 0.00 2.82
3473 4159 4.849310 TAGCGCGACCCCCAATGC 62.849 66.667 12.10 0.00 0.00 3.56
3478 4164 4.374584 CGACCCCCAATGCCCCAA 62.375 66.667 0.00 0.00 0.00 4.12
3479 4165 2.368188 GACCCCCAATGCCCCAAT 59.632 61.111 0.00 0.00 0.00 3.16
3480 4166 1.306911 GACCCCCAATGCCCCAATT 60.307 57.895 0.00 0.00 0.00 2.32
3481 4167 0.913934 GACCCCCAATGCCCCAATTT 60.914 55.000 0.00 0.00 0.00 1.82
3482 4168 0.419459 ACCCCCAATGCCCCAATTTA 59.581 50.000 0.00 0.00 0.00 1.40
3483 4169 0.836606 CCCCCAATGCCCCAATTTAC 59.163 55.000 0.00 0.00 0.00 2.01
3484 4170 1.624949 CCCCCAATGCCCCAATTTACT 60.625 52.381 0.00 0.00 0.00 2.24
3485 4171 2.195727 CCCCAATGCCCCAATTTACTT 58.804 47.619 0.00 0.00 0.00 2.24
3486 4172 3.379452 CCCCAATGCCCCAATTTACTTA 58.621 45.455 0.00 0.00 0.00 2.24
3487 4173 3.387699 CCCCAATGCCCCAATTTACTTAG 59.612 47.826 0.00 0.00 0.00 2.18
3488 4174 4.285863 CCCAATGCCCCAATTTACTTAGA 58.714 43.478 0.00 0.00 0.00 2.10
3489 4175 4.099419 CCCAATGCCCCAATTTACTTAGAC 59.901 45.833 0.00 0.00 0.00 2.59
3490 4176 4.709397 CCAATGCCCCAATTTACTTAGACA 59.291 41.667 0.00 0.00 0.00 3.41
3491 4177 5.363580 CCAATGCCCCAATTTACTTAGACAT 59.636 40.000 0.00 0.00 0.00 3.06
3492 4178 6.275335 CAATGCCCCAATTTACTTAGACATG 58.725 40.000 0.00 0.00 0.00 3.21
3493 4179 5.186256 TGCCCCAATTTACTTAGACATGA 57.814 39.130 0.00 0.00 0.00 3.07
3494 4180 4.947388 TGCCCCAATTTACTTAGACATGAC 59.053 41.667 0.00 0.00 0.00 3.06
3495 4181 5.193679 GCCCCAATTTACTTAGACATGACT 58.806 41.667 0.00 0.00 0.00 3.41
3496 4182 5.652452 GCCCCAATTTACTTAGACATGACTT 59.348 40.000 2.34 0.00 0.00 3.01
3497 4183 6.152831 GCCCCAATTTACTTAGACATGACTTT 59.847 38.462 2.34 0.00 0.00 2.66
3498 4184 7.338449 GCCCCAATTTACTTAGACATGACTTTA 59.662 37.037 2.34 0.00 0.00 1.85
3499 4185 9.238368 CCCCAATTTACTTAGACATGACTTTAA 57.762 33.333 2.34 0.00 0.00 1.52
3571 4257 5.376854 AGTGAAAAATCCCATCAAGTTCG 57.623 39.130 0.00 0.00 0.00 3.95
3572 4258 4.218417 AGTGAAAAATCCCATCAAGTTCGG 59.782 41.667 0.00 0.00 0.00 4.30
3573 4259 3.056891 TGAAAAATCCCATCAAGTTCGGC 60.057 43.478 0.00 0.00 0.00 5.54
3574 4260 2.214376 AAATCCCATCAAGTTCGGCA 57.786 45.000 0.00 0.00 0.00 5.69
3575 4261 2.442236 AATCCCATCAAGTTCGGCAT 57.558 45.000 0.00 0.00 0.00 4.40
3576 4262 1.683943 ATCCCATCAAGTTCGGCATG 58.316 50.000 0.00 0.00 0.00 4.06
3577 4263 0.617935 TCCCATCAAGTTCGGCATGA 59.382 50.000 0.00 0.00 0.00 3.07
3578 4264 1.004161 TCCCATCAAGTTCGGCATGAA 59.996 47.619 0.00 0.00 0.00 2.57
3579 4265 2.026641 CCCATCAAGTTCGGCATGAAT 58.973 47.619 0.00 0.00 39.21 2.57
3580 4266 2.428171 CCCATCAAGTTCGGCATGAATT 59.572 45.455 0.00 0.00 39.21 2.17
3581 4267 3.119029 CCCATCAAGTTCGGCATGAATTT 60.119 43.478 0.00 0.00 39.21 1.82
3586 4272 3.788333 AGTTCGGCATGAATTTGATGG 57.212 42.857 0.00 0.00 39.21 3.51
3587 4273 2.428171 AGTTCGGCATGAATTTGATGGG 59.572 45.455 0.00 0.00 39.21 4.00
3588 4274 1.401761 TCGGCATGAATTTGATGGGG 58.598 50.000 0.00 0.00 0.00 4.96
3589 4275 1.064091 TCGGCATGAATTTGATGGGGA 60.064 47.619 0.00 0.00 0.00 4.81
3590 4276 1.755959 CGGCATGAATTTGATGGGGAA 59.244 47.619 0.00 0.00 0.00 3.97
3591 4277 2.168106 CGGCATGAATTTGATGGGGAAA 59.832 45.455 0.00 0.00 0.00 3.13
3592 4278 3.369261 CGGCATGAATTTGATGGGGAAAA 60.369 43.478 0.00 0.00 0.00 2.29
3593 4279 4.683942 CGGCATGAATTTGATGGGGAAAAT 60.684 41.667 0.00 0.00 0.00 1.82
3594 4280 4.577283 GGCATGAATTTGATGGGGAAAATG 59.423 41.667 0.00 0.00 0.00 2.32
3595 4281 4.577283 GCATGAATTTGATGGGGAAAATGG 59.423 41.667 0.00 0.00 0.00 3.16
3596 4282 4.219264 TGAATTTGATGGGGAAAATGGC 57.781 40.909 0.00 0.00 0.00 4.40
3597 4283 3.845398 TGAATTTGATGGGGAAAATGGCT 59.155 39.130 0.00 0.00 0.00 4.75
3598 4284 4.289148 TGAATTTGATGGGGAAAATGGCTT 59.711 37.500 0.00 0.00 0.00 4.35
3599 4285 5.486775 TGAATTTGATGGGGAAAATGGCTTA 59.513 36.000 0.00 0.00 0.00 3.09
3600 4286 6.013032 TGAATTTGATGGGGAAAATGGCTTAA 60.013 34.615 0.00 0.00 0.00 1.85
3601 4287 5.832539 TTTGATGGGGAAAATGGCTTAAA 57.167 34.783 0.00 0.00 0.00 1.52
3602 4288 5.832539 TTGATGGGGAAAATGGCTTAAAA 57.167 34.783 0.00 0.00 0.00 1.52
3603 4289 6.385766 TTGATGGGGAAAATGGCTTAAAAT 57.614 33.333 0.00 0.00 0.00 1.82
3604 4290 6.385766 TGATGGGGAAAATGGCTTAAAATT 57.614 33.333 0.00 0.00 0.00 1.82
3605 4291 7.502060 TGATGGGGAAAATGGCTTAAAATTA 57.498 32.000 0.00 0.00 0.00 1.40
3606 4292 7.334858 TGATGGGGAAAATGGCTTAAAATTAC 58.665 34.615 0.00 0.00 0.00 1.89
3607 4293 6.688073 TGGGGAAAATGGCTTAAAATTACA 57.312 33.333 0.00 0.00 0.00 2.41
3608 4294 7.079451 TGGGGAAAATGGCTTAAAATTACAA 57.921 32.000 0.00 0.00 0.00 2.41
3609 4295 7.518188 TGGGGAAAATGGCTTAAAATTACAAA 58.482 30.769 0.00 0.00 0.00 2.83
3610 4296 7.998964 TGGGGAAAATGGCTTAAAATTACAAAA 59.001 29.630 0.00 0.00 0.00 2.44
3611 4297 8.851145 GGGGAAAATGGCTTAAAATTACAAAAA 58.149 29.630 0.00 0.00 0.00 1.94
3633 4319 8.518430 AAAAATTGCCATTCCAACTTAAAGTT 57.482 26.923 0.00 0.00 39.39 2.66
3634 4320 8.518430 AAAATTGCCATTCCAACTTAAAGTTT 57.482 26.923 0.00 0.00 36.03 2.66
3635 4321 9.620259 AAAATTGCCATTCCAACTTAAAGTTTA 57.380 25.926 0.00 0.00 36.03 2.01
3636 4322 9.791801 AAATTGCCATTCCAACTTAAAGTTTAT 57.208 25.926 0.00 0.00 36.03 1.40
3637 4323 9.791801 AATTGCCATTCCAACTTAAAGTTTATT 57.208 25.926 0.00 0.00 36.03 1.40
3638 4324 9.791801 ATTGCCATTCCAACTTAAAGTTTATTT 57.208 25.926 0.00 0.00 36.03 1.40
3639 4325 9.620259 TTGCCATTCCAACTTAAAGTTTATTTT 57.380 25.926 0.00 0.00 36.03 1.82
3640 4326 9.267084 TGCCATTCCAACTTAAAGTTTATTTTC 57.733 29.630 0.00 0.00 36.03 2.29
3641 4327 9.267084 GCCATTCCAACTTAAAGTTTATTTTCA 57.733 29.630 0.00 0.00 36.03 2.69
3663 4349 9.934784 TTTCATGATATAATGGAAAAGGAAGGA 57.065 29.630 0.00 0.00 0.00 3.36
3701 4387 9.807649 AAAGAGTATCATGATAACAAAATTGCC 57.192 29.630 16.97 1.23 37.82 4.52
3702 4388 8.523915 AGAGTATCATGATAACAAAATTGCCA 57.476 30.769 16.97 0.00 37.82 4.92
3703 4389 9.139734 AGAGTATCATGATAACAAAATTGCCAT 57.860 29.630 16.97 0.00 37.82 4.40
3704 4390 9.188588 GAGTATCATGATAACAAAATTGCCATG 57.811 33.333 16.97 0.00 33.17 3.66
3705 4391 8.145767 AGTATCATGATAACAAAATTGCCATGG 58.854 33.333 16.97 7.63 33.00 3.66
3706 4392 6.297080 TCATGATAACAAAATTGCCATGGT 57.703 33.333 14.67 0.00 33.00 3.55
3707 4393 6.107343 TCATGATAACAAAATTGCCATGGTG 58.893 36.000 14.67 4.82 33.00 4.17
3708 4394 4.252073 TGATAACAAAATTGCCATGGTGC 58.748 39.130 14.67 0.00 0.00 5.01
3709 4395 1.894881 AACAAAATTGCCATGGTGCC 58.105 45.000 14.67 0.00 0.00 5.01
3710 4396 1.058284 ACAAAATTGCCATGGTGCCT 58.942 45.000 14.67 0.00 0.00 4.75
3711 4397 1.420891 ACAAAATTGCCATGGTGCCTT 59.579 42.857 14.67 0.00 0.00 4.35
3712 4398 2.636893 ACAAAATTGCCATGGTGCCTTA 59.363 40.909 14.67 0.00 0.00 2.69
3713 4399 3.002102 CAAAATTGCCATGGTGCCTTAC 58.998 45.455 14.67 0.00 0.00 2.34
3714 4400 1.935799 AATTGCCATGGTGCCTTACA 58.064 45.000 14.67 0.00 0.00 2.41
3715 4401 1.935799 ATTGCCATGGTGCCTTACAA 58.064 45.000 14.67 7.38 0.00 2.41
3716 4402 1.709578 TTGCCATGGTGCCTTACAAA 58.290 45.000 14.67 0.00 0.00 2.83
3717 4403 1.709578 TGCCATGGTGCCTTACAAAA 58.290 45.000 14.67 0.00 0.00 2.44
3718 4404 1.617850 TGCCATGGTGCCTTACAAAAG 59.382 47.619 14.67 0.00 0.00 2.27
3729 4415 4.946784 CCTTACAAAAGGTCGATGAAGG 57.053 45.455 0.00 0.00 46.34 3.46
3730 4416 3.689649 CCTTACAAAAGGTCGATGAAGGG 59.310 47.826 0.00 0.00 46.34 3.95
3731 4417 1.534729 ACAAAAGGTCGATGAAGGGC 58.465 50.000 0.00 0.00 0.00 5.19
3732 4418 0.811281 CAAAAGGTCGATGAAGGGCC 59.189 55.000 0.00 0.00 0.00 5.80
3733 4419 0.698818 AAAAGGTCGATGAAGGGCCT 59.301 50.000 0.00 0.00 0.00 5.19
3734 4420 0.698818 AAAGGTCGATGAAGGGCCTT 59.301 50.000 21.09 21.09 40.86 4.35
3735 4421 0.253327 AAGGTCGATGAAGGGCCTTC 59.747 55.000 34.43 34.43 40.54 3.46
3736 4422 0.618968 AGGTCGATGAAGGGCCTTCT 60.619 55.000 38.24 26.74 40.73 2.85
3737 4423 0.179070 GGTCGATGAAGGGCCTTCTC 60.179 60.000 38.24 30.43 40.73 2.87
3738 4424 0.179070 GTCGATGAAGGGCCTTCTCC 60.179 60.000 38.24 28.90 40.73 3.71
3739 4425 0.325671 TCGATGAAGGGCCTTCTCCT 60.326 55.000 38.24 25.93 40.73 3.69
3740 4426 0.543749 CGATGAAGGGCCTTCTCCTT 59.456 55.000 38.24 23.90 46.37 3.36
3741 4427 1.762957 CGATGAAGGGCCTTCTCCTTA 59.237 52.381 38.24 23.37 43.98 2.69
3742 4428 2.483889 CGATGAAGGGCCTTCTCCTTAC 60.484 54.545 38.24 23.29 43.98 2.34
3743 4429 1.286248 TGAAGGGCCTTCTCCTTACC 58.714 55.000 38.24 17.30 43.98 2.85
3744 4430 0.547075 GAAGGGCCTTCTCCTTACCC 59.453 60.000 33.93 9.40 43.98 3.69
3745 4431 1.798171 AGGGCCTTCTCCTTACCCT 59.202 57.895 0.00 0.00 46.35 4.34
3746 4432 3.648914 GGGCCTTCTCCTTACCCTA 57.351 57.895 0.84 0.00 37.59 3.53
3747 4433 1.425694 GGGCCTTCTCCTTACCCTAG 58.574 60.000 0.84 0.00 37.59 3.02
3748 4434 1.344189 GGGCCTTCTCCTTACCCTAGT 60.344 57.143 0.84 0.00 37.59 2.57
3749 4435 2.090887 GGGCCTTCTCCTTACCCTAGTA 60.091 54.545 0.84 0.00 37.59 1.82
3750 4436 3.232662 GGCCTTCTCCTTACCCTAGTAG 58.767 54.545 0.00 0.00 0.00 2.57
3751 4437 3.373987 GGCCTTCTCCTTACCCTAGTAGT 60.374 52.174 0.00 0.00 0.00 2.73
3752 4438 4.141065 GGCCTTCTCCTTACCCTAGTAGTA 60.141 50.000 0.00 0.00 0.00 1.82
3753 4439 5.459389 GGCCTTCTCCTTACCCTAGTAGTAT 60.459 48.000 0.00 0.00 0.00 2.12
3754 4440 5.711506 GCCTTCTCCTTACCCTAGTAGTATC 59.288 48.000 0.00 0.00 0.00 2.24
3755 4441 6.693565 GCCTTCTCCTTACCCTAGTAGTATCA 60.694 46.154 0.00 0.00 0.00 2.15
3756 4442 6.943718 CCTTCTCCTTACCCTAGTAGTATCAG 59.056 46.154 0.00 0.00 0.00 2.90
3757 4443 5.878627 TCTCCTTACCCTAGTAGTATCAGC 58.121 45.833 0.00 0.00 0.00 4.26
3758 4444 5.611835 TCTCCTTACCCTAGTAGTATCAGCT 59.388 44.000 0.00 0.00 0.00 4.24
3759 4445 6.102910 TCTCCTTACCCTAGTAGTATCAGCTT 59.897 42.308 0.00 0.00 0.00 3.74
3760 4446 7.294245 TCTCCTTACCCTAGTAGTATCAGCTTA 59.706 40.741 0.00 0.00 0.00 3.09
3761 4447 7.997915 TCCTTACCCTAGTAGTATCAGCTTAT 58.002 38.462 0.00 0.00 0.00 1.73
3762 4448 7.889073 TCCTTACCCTAGTAGTATCAGCTTATG 59.111 40.741 0.00 0.00 0.00 1.90
3763 4449 7.670559 CCTTACCCTAGTAGTATCAGCTTATGT 59.329 40.741 0.00 0.00 0.00 2.29
3764 4450 9.080097 CTTACCCTAGTAGTATCAGCTTATGTT 57.920 37.037 0.00 0.00 0.00 2.71
3765 4451 7.527568 ACCCTAGTAGTATCAGCTTATGTTC 57.472 40.000 0.00 0.00 0.00 3.18
3766 4452 7.299134 ACCCTAGTAGTATCAGCTTATGTTCT 58.701 38.462 0.00 0.00 0.00 3.01
3767 4453 7.785506 ACCCTAGTAGTATCAGCTTATGTTCTT 59.214 37.037 0.00 0.00 0.00 2.52
3768 4454 8.301002 CCCTAGTAGTATCAGCTTATGTTCTTC 58.699 40.741 0.00 0.00 0.00 2.87
3769 4455 9.073475 CCTAGTAGTATCAGCTTATGTTCTTCT 57.927 37.037 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.936847 ACTCAGATGTTAATTGGTGTGAAACTA 59.063 33.333 0.00 0.00 38.04 2.24
1 2 6.772716 ACTCAGATGTTAATTGGTGTGAAACT 59.227 34.615 0.00 0.00 38.04 2.66
2 3 6.970484 ACTCAGATGTTAATTGGTGTGAAAC 58.030 36.000 0.00 0.00 37.35 2.78
5 6 4.929211 CGACTCAGATGTTAATTGGTGTGA 59.071 41.667 0.00 0.00 0.00 3.58
7 8 3.684788 GCGACTCAGATGTTAATTGGTGT 59.315 43.478 0.00 0.00 0.00 4.16
9 10 4.184629 GAGCGACTCAGATGTTAATTGGT 58.815 43.478 0.00 0.00 0.00 3.67
10 11 3.243877 CGAGCGACTCAGATGTTAATTGG 59.756 47.826 7.47 0.00 0.00 3.16
11 12 3.243877 CCGAGCGACTCAGATGTTAATTG 59.756 47.826 7.47 0.00 0.00 2.32
12 13 3.130516 TCCGAGCGACTCAGATGTTAATT 59.869 43.478 7.47 0.00 0.00 1.40
13 14 2.688446 TCCGAGCGACTCAGATGTTAAT 59.312 45.455 7.47 0.00 0.00 1.40
14 15 2.089201 TCCGAGCGACTCAGATGTTAA 58.911 47.619 7.47 0.00 0.00 2.01
36 37 4.171878 TGTTGGTTGGGAACACAAGATA 57.828 40.909 0.00 0.00 42.67 1.98
102 104 3.306780 GGGCGTGGATTATACTATGTGCT 60.307 47.826 0.00 0.00 0.00 4.40
103 105 3.000727 GGGCGTGGATTATACTATGTGC 58.999 50.000 0.00 0.00 0.00 4.57
104 106 3.057104 TCGGGCGTGGATTATACTATGTG 60.057 47.826 0.00 0.00 0.00 3.21
105 107 3.159472 TCGGGCGTGGATTATACTATGT 58.841 45.455 0.00 0.00 0.00 2.29
108 110 3.827876 TGATTCGGGCGTGGATTATACTA 59.172 43.478 0.00 0.00 0.00 1.82
124 131 1.635663 GGACACCTGCCGTTGATTCG 61.636 60.000 0.00 0.00 0.00 3.34
153 320 5.099042 ACGTTTTGGGAGTATAATCAGCT 57.901 39.130 2.18 0.00 0.00 4.24
155 322 7.611213 AGAAACGTTTTGGGAGTATAATCAG 57.389 36.000 15.89 0.00 0.00 2.90
160 327 9.158233 CTGAATAAGAAACGTTTTGGGAGTATA 57.842 33.333 15.89 1.10 0.00 1.47
161 328 7.881232 TCTGAATAAGAAACGTTTTGGGAGTAT 59.119 33.333 15.89 4.51 29.54 2.12
199 366 0.985490 AGCTCTGGATGGGAGGGTTC 60.985 60.000 0.00 0.00 0.00 3.62
229 396 0.604243 TGGTGTCGATTGGGGTTTCG 60.604 55.000 0.00 0.00 36.72 3.46
230 397 0.879090 GTGGTGTCGATTGGGGTTTC 59.121 55.000 0.00 0.00 0.00 2.78
237 404 0.586319 GTGTGGTGTGGTGTCGATTG 59.414 55.000 0.00 0.00 0.00 2.67
245 412 2.037772 GAGAGAGAATGTGTGGTGTGGT 59.962 50.000 0.00 0.00 0.00 4.16
246 413 2.301296 AGAGAGAGAATGTGTGGTGTGG 59.699 50.000 0.00 0.00 0.00 4.17
247 414 3.324117 CAGAGAGAGAATGTGTGGTGTG 58.676 50.000 0.00 0.00 0.00 3.82
248 415 2.289320 GCAGAGAGAGAATGTGTGGTGT 60.289 50.000 0.00 0.00 0.00 4.16
356 562 2.342279 CCAGGGAGCACGAACGAA 59.658 61.111 0.14 0.00 0.00 3.85
357 563 4.373116 GCCAGGGAGCACGAACGA 62.373 66.667 0.14 0.00 0.00 3.85
359 565 4.329545 TGGCCAGGGAGCACGAAC 62.330 66.667 0.00 0.00 0.00 3.95
400 641 3.402681 GCCCACTAGCTGGCTGGA 61.403 66.667 16.57 0.00 44.46 3.86
442 705 0.960364 ATTGATGTGCGTGGGGTGTC 60.960 55.000 0.00 0.00 0.00 3.67
448 711 0.297525 CGACGTATTGATGTGCGTGG 59.702 55.000 0.00 0.00 37.71 4.94
475 739 4.385405 AGCGAGGACACAGCTGGC 62.385 66.667 19.93 9.75 40.07 4.85
518 782 3.788766 GCTACTGCCCGTTGTGCG 61.789 66.667 0.00 0.00 40.95 5.34
535 808 1.301637 TGACGCTGTGGATGTGGTG 60.302 57.895 0.00 0.00 0.00 4.17
565 842 1.014564 GCCGCGATTAGTCTATGGCC 61.015 60.000 8.23 0.00 35.01 5.36
566 843 1.014564 GGCCGCGATTAGTCTATGGC 61.015 60.000 8.23 0.00 40.25 4.40
567 844 0.389948 GGGCCGCGATTAGTCTATGG 60.390 60.000 8.23 0.00 0.00 2.74
568 845 0.317160 TGGGCCGCGATTAGTCTATG 59.683 55.000 8.23 0.00 0.00 2.23
569 846 1.045407 TTGGGCCGCGATTAGTCTAT 58.955 50.000 8.23 0.00 0.00 1.98
570 847 0.825410 TTTGGGCCGCGATTAGTCTA 59.175 50.000 8.23 0.00 0.00 2.59
571 848 0.180406 ATTTGGGCCGCGATTAGTCT 59.820 50.000 8.23 0.00 0.00 3.24
572 849 1.021968 AATTTGGGCCGCGATTAGTC 58.978 50.000 8.23 0.00 0.00 2.59
573 850 0.738389 CAATTTGGGCCGCGATTAGT 59.262 50.000 8.23 0.00 0.00 2.24
584 861 6.152661 TGTCTAGAATAACTTGGCAATTTGGG 59.847 38.462 12.51 0.00 33.62 4.12
592 869 3.454812 TCCCCTGTCTAGAATAACTTGGC 59.545 47.826 0.00 0.00 0.00 4.52
594 871 5.422331 TCACTCCCCTGTCTAGAATAACTTG 59.578 44.000 0.00 0.00 0.00 3.16
595 872 5.590818 TCACTCCCCTGTCTAGAATAACTT 58.409 41.667 0.00 0.00 0.00 2.66
596 873 5.208294 TCACTCCCCTGTCTAGAATAACT 57.792 43.478 0.00 0.00 0.00 2.24
597 874 6.487299 AATCACTCCCCTGTCTAGAATAAC 57.513 41.667 0.00 0.00 0.00 1.89
598 875 6.267928 GCTAATCACTCCCCTGTCTAGAATAA 59.732 42.308 0.00 0.00 0.00 1.40
599 876 5.775701 GCTAATCACTCCCCTGTCTAGAATA 59.224 44.000 0.00 0.00 0.00 1.75
600 877 4.591072 GCTAATCACTCCCCTGTCTAGAAT 59.409 45.833 0.00 0.00 0.00 2.40
601 878 3.961408 GCTAATCACTCCCCTGTCTAGAA 59.039 47.826 0.00 0.00 0.00 2.10
602 879 3.567397 GCTAATCACTCCCCTGTCTAGA 58.433 50.000 0.00 0.00 0.00 2.43
603 880 2.294791 CGCTAATCACTCCCCTGTCTAG 59.705 54.545 0.00 0.00 0.00 2.43
604 881 2.307768 CGCTAATCACTCCCCTGTCTA 58.692 52.381 0.00 0.00 0.00 2.59
606 883 0.105039 CCGCTAATCACTCCCCTGTC 59.895 60.000 0.00 0.00 0.00 3.51
607 884 1.972660 GCCGCTAATCACTCCCCTGT 61.973 60.000 0.00 0.00 0.00 4.00
608 885 1.227674 GCCGCTAATCACTCCCCTG 60.228 63.158 0.00 0.00 0.00 4.45
611 888 2.280186 CCGCCGCTAATCACTCCC 60.280 66.667 0.00 0.00 0.00 4.30
612 889 1.300233 CTCCGCCGCTAATCACTCC 60.300 63.158 0.00 0.00 0.00 3.85
613 890 1.300233 CCTCCGCCGCTAATCACTC 60.300 63.158 0.00 0.00 0.00 3.51
614 891 2.797278 CCCTCCGCCGCTAATCACT 61.797 63.158 0.00 0.00 0.00 3.41
616 893 3.546543 CCCCTCCGCCGCTAATCA 61.547 66.667 0.00 0.00 0.00 2.57
617 894 3.103091 AACCCCTCCGCCGCTAATC 62.103 63.158 0.00 0.00 0.00 1.75
618 895 3.087906 AACCCCTCCGCCGCTAAT 61.088 61.111 0.00 0.00 0.00 1.73
619 896 4.090588 CAACCCCTCCGCCGCTAA 62.091 66.667 0.00 0.00 0.00 3.09
623 900 3.256824 TTAACCAACCCCTCCGCCG 62.257 63.158 0.00 0.00 0.00 6.46
626 903 1.378119 GGCTTAACCAACCCCTCCG 60.378 63.158 0.00 0.00 38.86 4.63
636 913 0.902984 CCAAACCCCAGGGCTTAACC 60.903 60.000 0.00 0.00 39.32 2.85
677 954 0.107017 CACCCCCAGCTGGTAATCAG 60.107 60.000 30.63 14.33 46.03 2.90
691 974 0.749649 TTGCAATTCACACACACCCC 59.250 50.000 0.00 0.00 0.00 4.95
693 976 3.932089 ACTTTTTGCAATTCACACACACC 59.068 39.130 0.00 0.00 0.00 4.16
695 978 5.106791 CCAAACTTTTTGCAATTCACACACA 60.107 36.000 0.00 0.00 0.00 3.72
701 984 7.446001 AAAGAACCAAACTTTTTGCAATTCA 57.554 28.000 0.00 0.00 34.50 2.57
732 1015 5.363292 TGTACTTATATAGGTTGACGGCCAA 59.637 40.000 2.24 0.00 0.00 4.52
789 1072 3.605634 TCCAAGGAAATGTATGTGGACG 58.394 45.455 0.00 0.00 30.27 4.79
797 1080 5.136828 TCTGCAAAACTCCAAGGAAATGTA 58.863 37.500 0.00 0.00 0.00 2.29
809 1093 1.239347 GGGTGGTCTCTGCAAAACTC 58.761 55.000 0.00 0.00 0.00 3.01
817 1101 1.687493 GAGGGAGGGGTGGTCTCTG 60.687 68.421 0.00 0.00 0.00 3.35
818 1102 2.781406 GAGGGAGGGGTGGTCTCT 59.219 66.667 0.00 0.00 0.00 3.10
819 1103 2.365768 GGAGGGAGGGGTGGTCTC 60.366 72.222 0.00 0.00 0.00 3.36
820 1104 4.026357 GGGAGGGAGGGGTGGTCT 62.026 72.222 0.00 0.00 0.00 3.85
821 1105 4.026357 AGGGAGGGAGGGGTGGTC 62.026 72.222 0.00 0.00 0.00 4.02
827 1111 2.018086 AGAGAGGAGGGAGGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
828 1112 1.292941 TGAGAGAGGAGGGAGGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
829 1113 0.859760 ATGAGAGAGGAGGGAGGGAG 59.140 60.000 0.00 0.00 0.00 4.30
830 1114 0.856982 GATGAGAGAGGAGGGAGGGA 59.143 60.000 0.00 0.00 0.00 4.20
833 1117 0.476338 TCGGATGAGAGAGGAGGGAG 59.524 60.000 0.00 0.00 0.00 4.30
834 1118 1.074727 GATCGGATGAGAGAGGAGGGA 59.925 57.143 0.00 0.00 0.00 4.20
840 1124 1.962807 AGCTTGGATCGGATGAGAGAG 59.037 52.381 0.00 0.00 0.00 3.20
841 1125 2.079170 AGCTTGGATCGGATGAGAGA 57.921 50.000 0.00 0.00 0.00 3.10
842 1126 2.351253 CGTAGCTTGGATCGGATGAGAG 60.351 54.545 0.00 0.00 0.00 3.20
864 1148 0.603569 CAGTGCGGGACTTGTCTAGT 59.396 55.000 0.00 0.00 40.71 2.57
909 1193 3.503748 GGAAGCTAAGCTGAGCAAGAAAA 59.496 43.478 25.38 0.00 45.43 2.29
913 1197 2.105006 TGGAAGCTAAGCTGAGCAAG 57.895 50.000 25.38 4.70 45.43 4.01
963 1247 1.865340 GCGGACTCACGGATATTTTCC 59.135 52.381 0.00 0.00 41.59 3.13
977 1261 1.527380 GATCTCCCTCTCGCGGACT 60.527 63.158 6.13 0.00 0.00 3.85
1013 1301 2.360475 GGCTCACCTCCTTGTGGC 60.360 66.667 0.00 0.00 36.87 5.01
1072 1360 1.272212 GCAGGAGGATTCGATCTCTCC 59.728 57.143 16.14 16.14 42.35 3.71
1086 1375 0.037882 TGAACTCTCGCAAGCAGGAG 60.038 55.000 8.89 8.89 35.47 3.69
1087 1376 0.610174 ATGAACTCTCGCAAGCAGGA 59.390 50.000 0.00 0.00 37.18 3.86
1088 1377 1.005340 GATGAACTCTCGCAAGCAGG 58.995 55.000 0.00 0.00 37.18 4.85
1089 1378 1.005340 GGATGAACTCTCGCAAGCAG 58.995 55.000 0.00 0.00 37.18 4.24
1090 1379 0.321346 TGGATGAACTCTCGCAAGCA 59.679 50.000 0.00 0.00 37.18 3.91
1091 1380 1.329906 CATGGATGAACTCTCGCAAGC 59.670 52.381 0.00 0.00 37.18 4.01
1092 1381 1.938577 CCATGGATGAACTCTCGCAAG 59.061 52.381 5.56 0.00 0.00 4.01
1093 1382 1.407299 CCCATGGATGAACTCTCGCAA 60.407 52.381 15.22 0.00 0.00 4.85
1094 1383 0.178767 CCCATGGATGAACTCTCGCA 59.821 55.000 15.22 0.00 0.00 5.10
1095 1384 0.179000 ACCCATGGATGAACTCTCGC 59.821 55.000 15.22 0.00 0.00 5.03
1096 1385 2.698855 AACCCATGGATGAACTCTCG 57.301 50.000 15.22 0.00 0.00 4.04
1097 1386 3.054065 AGGAAACCCATGGATGAACTCTC 60.054 47.826 15.22 0.00 0.00 3.20
1098 1387 2.922283 AGGAAACCCATGGATGAACTCT 59.078 45.455 15.22 0.00 0.00 3.24
1099 1388 3.372440 AGGAAACCCATGGATGAACTC 57.628 47.619 15.22 0.55 0.00 3.01
1100 1389 3.833559 AAGGAAACCCATGGATGAACT 57.166 42.857 15.22 2.65 0.00 3.01
1101 1390 3.195610 GGAAAGGAAACCCATGGATGAAC 59.804 47.826 15.22 0.00 0.00 3.18
1102 1391 3.440127 GGAAAGGAAACCCATGGATGAA 58.560 45.455 15.22 0.00 0.00 2.57
1103 1392 2.292192 GGGAAAGGAAACCCATGGATGA 60.292 50.000 15.22 0.00 44.96 2.92
1122 1420 1.961180 AACCAGATCGCGAGGAAGGG 61.961 60.000 18.70 14.97 0.00 3.95
1142 1440 4.785346 ATCTTCTATCAAGCCACCACAT 57.215 40.909 0.00 0.00 0.00 3.21
1145 1443 4.018506 TCCAAATCTTCTATCAAGCCACCA 60.019 41.667 0.00 0.00 0.00 4.17
1155 1453 2.545526 CGCACGCATCCAAATCTTCTAT 59.454 45.455 0.00 0.00 0.00 1.98
1409 1719 4.673375 AGCTTGGTGGGCTGCTGG 62.673 66.667 0.00 0.00 38.73 4.85
1410 1720 3.060615 GAGCTTGGTGGGCTGCTG 61.061 66.667 0.00 0.00 40.40 4.41
1411 1721 4.711949 CGAGCTTGGTGGGCTGCT 62.712 66.667 0.00 0.00 40.40 4.24
1478 1800 1.876263 GGAAGAAGAGCGAGCGAGC 60.876 63.158 0.00 0.00 37.41 5.03
1484 1806 0.972983 CAGGGAGGGAAGAAGAGCGA 60.973 60.000 0.00 0.00 0.00 4.93
1485 1807 1.261238 ACAGGGAGGGAAGAAGAGCG 61.261 60.000 0.00 0.00 0.00 5.03
1486 1808 0.988063 AACAGGGAGGGAAGAAGAGC 59.012 55.000 0.00 0.00 0.00 4.09
1487 1809 1.339535 GCAACAGGGAGGGAAGAAGAG 60.340 57.143 0.00 0.00 0.00 2.85
1488 1810 0.693049 GCAACAGGGAGGGAAGAAGA 59.307 55.000 0.00 0.00 0.00 2.87
1489 1811 0.695347 AGCAACAGGGAGGGAAGAAG 59.305 55.000 0.00 0.00 0.00 2.85
1490 1812 1.149101 AAGCAACAGGGAGGGAAGAA 58.851 50.000 0.00 0.00 0.00 2.52
1491 1813 1.628846 GTAAGCAACAGGGAGGGAAGA 59.371 52.381 0.00 0.00 0.00 2.87
1504 1826 1.557832 ACCAGGCCGAATAGTAAGCAA 59.442 47.619 0.00 0.00 0.00 3.91
1519 1841 5.902681 TCGATGACTTATCAAACTACCAGG 58.097 41.667 0.00 0.00 38.69 4.45
1520 1842 9.186323 CTAATCGATGACTTATCAAACTACCAG 57.814 37.037 0.00 0.00 38.69 4.00
1565 1888 1.152673 GTGGGCATGGGATTCCTCC 60.153 63.158 2.01 0.00 41.26 4.30
1571 1894 0.116940 AAAGGTTGTGGGCATGGGAT 59.883 50.000 0.00 0.00 0.00 3.85
1576 1899 1.632589 GGAGAAAAGGTTGTGGGCAT 58.367 50.000 0.00 0.00 0.00 4.40
1579 1902 0.537371 AGCGGAGAAAAGGTTGTGGG 60.537 55.000 0.00 0.00 0.00 4.61
1587 1910 3.545633 CTTTTGACGAAGCGGAGAAAAG 58.454 45.455 0.00 0.00 30.60 2.27
1591 1914 0.677288 TCCTTTTGACGAAGCGGAGA 59.323 50.000 0.00 0.00 0.00 3.71
1592 1915 1.508632 TTCCTTTTGACGAAGCGGAG 58.491 50.000 0.00 0.00 0.00 4.63
1593 1916 1.956297 TTTCCTTTTGACGAAGCGGA 58.044 45.000 0.00 0.00 0.00 5.54
1617 1940 6.656632 AATGGAGAAAAGTTTCCTCTTTCC 57.343 37.500 1.60 1.96 36.75 3.13
1622 1945 5.941948 TCGAAATGGAGAAAAGTTTCCTC 57.058 39.130 0.00 0.00 37.92 3.71
1625 1948 5.795441 CCGAATCGAAATGGAGAAAAGTTTC 59.205 40.000 3.36 0.00 37.45 2.78
1650 1973 0.535335 TCCGGGTCAGCTATGAACAC 59.465 55.000 0.00 0.00 45.63 3.32
1656 1979 2.456073 ACTAGTTCCGGGTCAGCTAT 57.544 50.000 0.00 0.00 0.00 2.97
1672 1995 8.461249 AAGTCCGAATCTTTATGCTACTACTA 57.539 34.615 0.00 0.00 0.00 1.82
1673 1996 6.963083 AGTCCGAATCTTTATGCTACTACT 57.037 37.500 0.00 0.00 0.00 2.57
1674 1997 7.921745 AGAAAGTCCGAATCTTTATGCTACTAC 59.078 37.037 0.00 0.00 35.62 2.73
1735 2063 2.346803 CTGTTCATCGATTCGGGTGTT 58.653 47.619 6.18 0.00 0.00 3.32
1736 2064 2.007049 GCTGTTCATCGATTCGGGTGT 61.007 52.381 6.18 0.00 0.00 4.16
1738 2066 0.249120 TGCTGTTCATCGATTCGGGT 59.751 50.000 6.18 0.00 0.00 5.28
1740 2068 1.645034 ACTGCTGTTCATCGATTCGG 58.355 50.000 6.18 0.00 0.00 4.30
1741 2069 6.696825 ATTATACTGCTGTTCATCGATTCG 57.303 37.500 0.09 0.00 0.00 3.34
1743 2071 8.864024 CGAATATTATACTGCTGTTCATCGATT 58.136 33.333 0.09 0.00 0.00 3.34
1744 2072 8.029522 ACGAATATTATACTGCTGTTCATCGAT 58.970 33.333 0.09 0.00 0.00 3.59
1745 2073 7.368059 ACGAATATTATACTGCTGTTCATCGA 58.632 34.615 0.09 0.00 0.00 3.59
1746 2074 7.568267 ACGAATATTATACTGCTGTTCATCG 57.432 36.000 0.09 6.00 0.00 3.84
1748 2076 7.442364 AGCAACGAATATTATACTGCTGTTCAT 59.558 33.333 0.09 0.00 37.28 2.57
1749 2077 6.761242 AGCAACGAATATTATACTGCTGTTCA 59.239 34.615 0.09 0.00 37.28 3.18
1750 2078 7.178712 AGCAACGAATATTATACTGCTGTTC 57.821 36.000 0.09 0.00 37.28 3.18
1751 2079 7.065803 ACAAGCAACGAATATTATACTGCTGTT 59.934 33.333 0.09 3.42 38.59 3.16
1752 2080 6.538742 ACAAGCAACGAATATTATACTGCTGT 59.461 34.615 12.14 0.66 38.59 4.40
1753 2081 6.948353 ACAAGCAACGAATATTATACTGCTG 58.052 36.000 12.14 9.76 38.59 4.41
1769 2099 1.203065 GCTGCTGTTCAACAAGCAAC 58.797 50.000 9.02 4.87 33.40 4.17
1888 2277 6.223852 TCCTAGCACTTCTTTGAAGTACTTG 58.776 40.000 14.14 13.69 0.00 3.16
1918 2307 3.060205 GTCAGTTTCACTCGCTTGTTCTC 60.060 47.826 0.00 0.00 0.00 2.87
1926 2315 1.789464 CACAGAGTCAGTTTCACTCGC 59.211 52.381 0.00 0.00 44.40 5.03
1942 2331 0.666274 ACATGTACGCCGTGACACAG 60.666 55.000 0.00 0.00 34.01 3.66
1946 2335 0.947180 ACCAACATGTACGCCGTGAC 60.947 55.000 0.00 0.00 34.01 3.67
1951 2340 1.810959 TGGTTACCAACATGTACGCC 58.189 50.000 0.00 0.00 0.00 5.68
1966 2355 6.151144 GGTAAATGCAGAGTAACAGAATGGTT 59.849 38.462 0.00 0.00 43.62 3.67
2040 2432 8.153479 TGTAGTACGTACTCTACTTGTTTTCA 57.847 34.615 30.53 6.70 37.83 2.69
2050 2442 4.816392 TCGGTGTTGTAGTACGTACTCTA 58.184 43.478 30.53 18.00 37.73 2.43
2051 2443 3.664107 TCGGTGTTGTAGTACGTACTCT 58.336 45.455 30.53 11.97 37.73 3.24
2052 2444 4.404507 TTCGGTGTTGTAGTACGTACTC 57.595 45.455 30.53 21.12 37.73 2.59
2053 2445 4.829064 TTTCGGTGTTGTAGTACGTACT 57.171 40.909 29.62 29.62 40.24 2.73
2054 2446 4.976116 ACTTTTCGGTGTTGTAGTACGTAC 59.024 41.667 18.10 18.10 0.00 3.67
2055 2447 5.181690 ACTTTTCGGTGTTGTAGTACGTA 57.818 39.130 0.00 0.00 0.00 3.57
2056 2448 4.044426 GACTTTTCGGTGTTGTAGTACGT 58.956 43.478 0.00 0.00 0.00 3.57
2057 2449 3.118482 CGACTTTTCGGTGTTGTAGTACG 59.882 47.826 0.00 0.00 41.89 3.67
2058 2450 4.290155 TCGACTTTTCGGTGTTGTAGTAC 58.710 43.478 0.00 0.00 45.90 2.73
2059 2451 4.566545 TCGACTTTTCGGTGTTGTAGTA 57.433 40.909 0.00 0.00 45.90 1.82
2060 2452 3.441496 TCGACTTTTCGGTGTTGTAGT 57.559 42.857 0.00 0.00 45.90 2.73
2061 2453 3.060070 GGTTCGACTTTTCGGTGTTGTAG 60.060 47.826 0.00 0.00 45.90 2.74
2106 2501 9.880064 CATCATCTAAACTTGCTTAGAATGATG 57.120 33.333 18.28 18.28 40.42 3.07
2108 2503 9.842775 ATCATCATCTAAACTTGCTTAGAATGA 57.157 29.630 8.88 8.88 40.42 2.57
2109 2504 9.880064 CATCATCATCTAAACTTGCTTAGAATG 57.120 33.333 0.00 0.01 40.42 2.67
2110 2505 9.842775 TCATCATCATCTAAACTTGCTTAGAAT 57.157 29.630 0.00 0.00 40.42 2.40
2112 2507 9.269453 CATCATCATCATCTAAACTTGCTTAGA 57.731 33.333 0.00 0.00 41.09 2.10
2113 2508 8.504815 CCATCATCATCATCTAAACTTGCTTAG 58.495 37.037 0.00 0.00 0.00 2.18
2149 2547 1.537562 CGGGTAGACGCCCTAAACATC 60.538 57.143 6.58 0.00 46.47 3.06
2214 2612 2.301870 GGGTTGATATATCTGCCGACCA 59.698 50.000 13.79 0.00 0.00 4.02
2268 2674 3.059325 GTGAGCTGTGACAAAAGCACTAG 60.059 47.826 12.56 0.00 42.06 2.57
2270 2676 1.672881 GTGAGCTGTGACAAAAGCACT 59.327 47.619 12.56 0.00 42.06 4.40
2271 2677 1.401552 TGTGAGCTGTGACAAAAGCAC 59.598 47.619 12.56 7.71 42.06 4.40
2272 2678 1.672363 CTGTGAGCTGTGACAAAAGCA 59.328 47.619 12.56 0.00 42.06 3.91
2273 2679 1.598924 GCTGTGAGCTGTGACAAAAGC 60.599 52.381 0.00 3.66 38.45 3.51
2274 2680 2.396160 GCTGTGAGCTGTGACAAAAG 57.604 50.000 0.00 0.00 38.45 2.27
2356 2969 5.559148 ATTCTCGGCTTCTTCAATCCTAT 57.441 39.130 0.00 0.00 0.00 2.57
2379 2992 3.368248 ACAGGGCCGTTGATAACTACTA 58.632 45.455 12.37 0.00 0.00 1.82
2380 2993 2.185387 ACAGGGCCGTTGATAACTACT 58.815 47.619 12.37 0.00 0.00 2.57
2381 2994 2.685850 ACAGGGCCGTTGATAACTAC 57.314 50.000 12.37 0.00 0.00 2.73
2428 3041 8.482852 AAGCTAATGTATATTTGGCCAAGATT 57.517 30.769 19.48 9.99 0.00 2.40
2441 3054 9.793259 CATAAGGAAAGGGAAAGCTAATGTATA 57.207 33.333 0.00 0.00 0.00 1.47
2457 3070 7.095523 CCAATTTGTGCTTTGTCATAAGGAAAG 60.096 37.037 0.00 0.00 0.00 2.62
2458 3071 6.705381 CCAATTTGTGCTTTGTCATAAGGAAA 59.295 34.615 0.00 0.00 0.00 3.13
2459 3072 6.183360 ACCAATTTGTGCTTTGTCATAAGGAA 60.183 34.615 0.00 0.00 0.00 3.36
2460 3073 5.304101 ACCAATTTGTGCTTTGTCATAAGGA 59.696 36.000 0.00 0.00 0.00 3.36
2461 3074 5.540911 ACCAATTTGTGCTTTGTCATAAGG 58.459 37.500 0.00 0.00 0.00 2.69
2462 3075 6.700960 TCAACCAATTTGTGCTTTGTCATAAG 59.299 34.615 0.00 0.00 36.49 1.73
2507 3120 6.700960 TCTGAAATGTTGTTTGGCAAACTATG 59.299 34.615 35.03 18.17 41.90 2.23
2516 3129 4.431809 TGCAGTTCTGAAATGTTGTTTGG 58.568 39.130 17.77 0.00 0.00 3.28
2558 3171 0.179094 TAGATAACCAGGTTGCGCGG 60.179 55.000 15.82 0.00 0.00 6.46
2614 3227 1.571460 CACGCCACAGCTGAAGTTC 59.429 57.895 23.35 3.53 36.60 3.01
2630 3253 4.389077 GGTGATACGGCAAGAATATAGCAC 59.611 45.833 0.00 0.00 32.69 4.40
2645 3272 0.882042 GCCATCAGCCAGGTGATACG 60.882 60.000 11.71 6.83 35.30 3.06
2677 3308 8.723365 TCCTTCCAGGTCATTACATTATACAAT 58.277 33.333 0.00 0.00 36.53 2.71
2678 3309 8.096621 TCCTTCCAGGTCATTACATTATACAA 57.903 34.615 0.00 0.00 36.53 2.41
2842 3473 1.756538 AGCTTGACCAAACACCAAAGG 59.243 47.619 0.00 0.00 0.00 3.11
2869 3500 9.365311 CGTGGAATTATATTACACATTTCGTTC 57.635 33.333 13.53 0.00 32.58 3.95
2870 3501 7.853929 GCGTGGAATTATATTACACATTTCGTT 59.146 33.333 13.53 0.00 32.58 3.85
2871 3502 7.349711 GCGTGGAATTATATTACACATTTCGT 58.650 34.615 13.53 0.00 32.58 3.85
2872 3503 6.795114 GGCGTGGAATTATATTACACATTTCG 59.205 38.462 13.53 2.51 32.58 3.46
2873 3504 7.040686 AGGGCGTGGAATTATATTACACATTTC 60.041 37.037 13.53 2.49 32.58 2.17
2896 3527 1.822990 TCTAAACAGGTAGCGTCAGGG 59.177 52.381 0.00 0.00 0.00 4.45
2921 3552 2.483014 TCCCCACATAAAACCGTCTG 57.517 50.000 0.00 0.00 0.00 3.51
2999 3630 2.306805 TCACACCAGATGCCATTTCTCT 59.693 45.455 0.00 0.00 0.00 3.10
3017 3648 5.245531 TGTGAGGGTGTTCAAGATTATCAC 58.754 41.667 0.00 0.00 36.08 3.06
3025 3656 2.455674 TCGATGTGAGGGTGTTCAAG 57.544 50.000 0.00 0.00 0.00 3.02
3037 3668 4.264543 GAAGTATTGCCAGTTCGATGTG 57.735 45.455 0.00 0.00 0.00 3.21
3043 3681 3.000322 CGATGTCGAAGTATTGCCAGTTC 60.000 47.826 0.00 0.00 43.02 3.01
3068 3706 0.322546 GCTGTTAGGGTTCCTGGTGG 60.323 60.000 0.00 0.00 34.61 4.61
3071 3709 0.253327 GGAGCTGTTAGGGTTCCTGG 59.747 60.000 0.00 0.00 34.61 4.45
3083 3721 0.320771 GATGGACGTGTTGGAGCTGT 60.321 55.000 0.00 0.00 0.00 4.40
3084 3722 0.036952 AGATGGACGTGTTGGAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
3085 3723 0.687354 AAGATGGACGTGTTGGAGCT 59.313 50.000 0.00 0.00 0.00 4.09
3086 3724 0.798776 CAAGATGGACGTGTTGGAGC 59.201 55.000 0.00 0.00 0.00 4.70
3087 3725 1.001974 TCCAAGATGGACGTGTTGGAG 59.998 52.381 16.49 0.00 44.00 3.86
3088 3726 1.052617 TCCAAGATGGACGTGTTGGA 58.947 50.000 16.49 16.49 45.91 3.53
3103 3761 6.715264 GGGAATCACTCTTTACTTTCTTCCAA 59.285 38.462 0.00 0.00 33.01 3.53
3109 3767 5.818336 GCTAGGGGAATCACTCTTTACTTTC 59.182 44.000 0.00 0.00 0.00 2.62
3110 3768 5.489278 AGCTAGGGGAATCACTCTTTACTTT 59.511 40.000 0.00 0.00 0.00 2.66
3111 3769 5.033522 AGCTAGGGGAATCACTCTTTACTT 58.966 41.667 0.00 0.00 0.00 2.24
3112 3770 4.625963 AGCTAGGGGAATCACTCTTTACT 58.374 43.478 0.00 0.00 0.00 2.24
3113 3771 5.104900 TGAAGCTAGGGGAATCACTCTTTAC 60.105 44.000 0.00 0.00 0.00 2.01
3114 3772 5.030147 TGAAGCTAGGGGAATCACTCTTTA 58.970 41.667 0.00 0.00 0.00 1.85
3121 3782 1.915489 TGCTTGAAGCTAGGGGAATCA 59.085 47.619 18.94 0.00 42.97 2.57
3145 3806 3.441922 GGAAAGCAGAGGAGAAATTGGAC 59.558 47.826 0.00 0.00 0.00 4.02
3167 3828 0.329261 TTTCAGCATCTGGTCCTGGG 59.671 55.000 0.00 0.00 31.51 4.45
3168 3829 1.004044 AGTTTCAGCATCTGGTCCTGG 59.996 52.381 0.00 0.00 31.51 4.45
3171 3832 0.807496 GCAGTTTCAGCATCTGGTCC 59.193 55.000 0.00 0.00 31.51 4.46
3204 3885 4.945543 CAGTGGGTTTGATCATGAGATTGA 59.054 41.667 0.09 0.00 33.72 2.57
3216 3897 0.250467 GCTCTCAGCAGTGGGTTTGA 60.250 55.000 0.00 0.00 41.89 2.69
3261 3942 4.385825 TCATAAGTCTTTGCAAAGGTCGT 58.614 39.130 33.01 25.25 36.67 4.34
3280 3961 6.665992 TCGAGGCCTTTGTAATATACTCAT 57.334 37.500 6.77 0.00 0.00 2.90
3282 3963 5.348997 GCATCGAGGCCTTTGTAATATACTC 59.651 44.000 11.78 0.00 0.00 2.59
3283 3964 5.012148 AGCATCGAGGCCTTTGTAATATACT 59.988 40.000 19.85 0.00 0.00 2.12
3284 3965 5.238583 AGCATCGAGGCCTTTGTAATATAC 58.761 41.667 19.85 0.00 0.00 1.47
3285 3966 5.483685 AGCATCGAGGCCTTTGTAATATA 57.516 39.130 19.85 0.00 0.00 0.86
3286 3967 4.357918 AGCATCGAGGCCTTTGTAATAT 57.642 40.909 19.85 0.00 0.00 1.28
3287 3968 3.838244 AGCATCGAGGCCTTTGTAATA 57.162 42.857 19.85 0.00 0.00 0.98
3288 3969 2.717639 AGCATCGAGGCCTTTGTAAT 57.282 45.000 19.85 0.00 0.00 1.89
3289 3970 2.489938 AAGCATCGAGGCCTTTGTAA 57.510 45.000 19.85 0.00 0.00 2.41
3290 3971 2.489938 AAAGCATCGAGGCCTTTGTA 57.510 45.000 19.85 0.00 0.00 2.41
3291 3972 1.541588 GAAAAGCATCGAGGCCTTTGT 59.458 47.619 21.98 4.88 28.08 2.83
3292 3973 1.466360 CGAAAAGCATCGAGGCCTTTG 60.466 52.381 21.98 14.00 45.48 2.77
3293 3974 0.804989 CGAAAAGCATCGAGGCCTTT 59.195 50.000 17.68 17.68 45.48 3.11
3294 3975 0.321653 ACGAAAAGCATCGAGGCCTT 60.322 50.000 19.85 9.65 45.48 4.35
3295 3976 1.021390 CACGAAAAGCATCGAGGCCT 61.021 55.000 19.85 3.86 45.48 5.19
3386 4068 4.351054 CCAGCCCCATATCCCGGC 62.351 72.222 0.00 0.00 43.35 6.13
3441 4127 0.574454 CGCTACAAGCTGATCGAAGC 59.426 55.000 0.62 0.62 43.88 3.86
3442 4128 0.574454 GCGCTACAAGCTGATCGAAG 59.426 55.000 0.00 0.00 39.60 3.79
3443 4129 1.139816 CGCGCTACAAGCTGATCGAA 61.140 55.000 5.56 0.00 39.60 3.71
3444 4130 1.586303 CGCGCTACAAGCTGATCGA 60.586 57.895 5.56 0.00 39.60 3.59
3445 4131 1.586303 TCGCGCTACAAGCTGATCG 60.586 57.895 5.56 0.00 39.60 3.69
3446 4132 1.483424 GGTCGCGCTACAAGCTGATC 61.483 60.000 14.50 0.00 39.60 2.92
3447 4133 1.519455 GGTCGCGCTACAAGCTGAT 60.519 57.895 14.50 0.00 39.60 2.90
3448 4134 2.126071 GGTCGCGCTACAAGCTGA 60.126 61.111 14.50 0.00 39.60 4.26
3449 4135 3.188786 GGGTCGCGCTACAAGCTG 61.189 66.667 14.50 0.00 39.60 4.24
3450 4136 4.452733 GGGGTCGCGCTACAAGCT 62.453 66.667 14.50 0.00 39.60 3.74
3452 4138 2.869503 ATTGGGGGTCGCGCTACAAG 62.870 60.000 14.50 0.00 0.00 3.16
3453 4139 2.961893 ATTGGGGGTCGCGCTACAA 61.962 57.895 14.50 6.13 0.00 2.41
3454 4140 3.395702 ATTGGGGGTCGCGCTACA 61.396 61.111 14.50 0.00 0.00 2.74
3455 4141 2.895372 CATTGGGGGTCGCGCTAC 60.895 66.667 5.56 4.17 0.00 3.58
3456 4142 4.849310 GCATTGGGGGTCGCGCTA 62.849 66.667 5.56 0.00 0.00 4.26
3461 4147 3.677480 ATTGGGGCATTGGGGGTCG 62.677 63.158 0.00 0.00 0.00 4.79
3462 4148 0.913934 AAATTGGGGCATTGGGGGTC 60.914 55.000 0.00 0.00 0.00 4.46
3463 4149 0.419459 TAAATTGGGGCATTGGGGGT 59.581 50.000 0.00 0.00 0.00 4.95
3464 4150 0.836606 GTAAATTGGGGCATTGGGGG 59.163 55.000 0.00 0.00 0.00 5.40
3465 4151 1.878211 AGTAAATTGGGGCATTGGGG 58.122 50.000 0.00 0.00 0.00 4.96
3466 4152 4.099419 GTCTAAGTAAATTGGGGCATTGGG 59.901 45.833 0.00 0.00 0.00 4.12
3467 4153 4.709397 TGTCTAAGTAAATTGGGGCATTGG 59.291 41.667 0.00 0.00 0.00 3.16
3468 4154 5.913137 TGTCTAAGTAAATTGGGGCATTG 57.087 39.130 0.00 0.00 0.00 2.82
3469 4155 6.096846 GTCATGTCTAAGTAAATTGGGGCATT 59.903 38.462 0.00 0.00 0.00 3.56
3470 4156 5.594317 GTCATGTCTAAGTAAATTGGGGCAT 59.406 40.000 0.00 0.00 0.00 4.40
3471 4157 4.947388 GTCATGTCTAAGTAAATTGGGGCA 59.053 41.667 0.00 0.00 0.00 5.36
3472 4158 5.193679 AGTCATGTCTAAGTAAATTGGGGC 58.806 41.667 0.00 0.00 0.00 5.80
3473 4159 7.703058 AAAGTCATGTCTAAGTAAATTGGGG 57.297 36.000 0.00 0.00 0.00 4.96
3545 4231 8.840321 CGAACTTGATGGGATTTTTCACTATAT 58.160 33.333 0.00 0.00 0.00 0.86
3546 4232 7.282224 CCGAACTTGATGGGATTTTTCACTATA 59.718 37.037 0.00 0.00 0.00 1.31
3547 4233 6.095440 CCGAACTTGATGGGATTTTTCACTAT 59.905 38.462 0.00 0.00 0.00 2.12
3548 4234 5.414454 CCGAACTTGATGGGATTTTTCACTA 59.586 40.000 0.00 0.00 0.00 2.74
3549 4235 4.218417 CCGAACTTGATGGGATTTTTCACT 59.782 41.667 0.00 0.00 0.00 3.41
3550 4236 4.485163 CCGAACTTGATGGGATTTTTCAC 58.515 43.478 0.00 0.00 0.00 3.18
3551 4237 3.056891 GCCGAACTTGATGGGATTTTTCA 60.057 43.478 0.00 0.00 0.00 2.69
3552 4238 3.056891 TGCCGAACTTGATGGGATTTTTC 60.057 43.478 0.00 0.00 0.00 2.29
3553 4239 2.896685 TGCCGAACTTGATGGGATTTTT 59.103 40.909 0.00 0.00 0.00 1.94
3554 4240 2.524306 TGCCGAACTTGATGGGATTTT 58.476 42.857 0.00 0.00 0.00 1.82
3555 4241 2.214376 TGCCGAACTTGATGGGATTT 57.786 45.000 0.00 0.00 0.00 2.17
3556 4242 2.026641 CATGCCGAACTTGATGGGATT 58.973 47.619 0.00 0.00 30.70 3.01
3557 4243 1.212688 TCATGCCGAACTTGATGGGAT 59.787 47.619 0.00 0.00 33.71 3.85
3558 4244 0.617935 TCATGCCGAACTTGATGGGA 59.382 50.000 0.00 0.00 0.00 4.37
3559 4245 1.462616 TTCATGCCGAACTTGATGGG 58.537 50.000 0.00 0.00 32.89 4.00
3560 4246 3.788333 AATTCATGCCGAACTTGATGG 57.212 42.857 0.00 0.00 36.12 3.51
3561 4247 4.735985 TCAAATTCATGCCGAACTTGATG 58.264 39.130 5.93 0.00 43.08 3.07
3564 4250 3.861113 CCATCAAATTCATGCCGAACTTG 59.139 43.478 1.85 1.85 41.21 3.16
3565 4251 3.119029 CCCATCAAATTCATGCCGAACTT 60.119 43.478 0.00 0.00 36.12 2.66
3566 4252 2.428171 CCCATCAAATTCATGCCGAACT 59.572 45.455 0.00 0.00 36.12 3.01
3567 4253 2.481795 CCCCATCAAATTCATGCCGAAC 60.482 50.000 0.00 0.00 36.12 3.95
3568 4254 1.755959 CCCCATCAAATTCATGCCGAA 59.244 47.619 0.00 0.00 38.22 4.30
3569 4255 1.064091 TCCCCATCAAATTCATGCCGA 60.064 47.619 0.00 0.00 0.00 5.54
3570 4256 1.401761 TCCCCATCAAATTCATGCCG 58.598 50.000 0.00 0.00 0.00 5.69
3571 4257 3.910568 TTTCCCCATCAAATTCATGCC 57.089 42.857 0.00 0.00 0.00 4.40
3572 4258 4.577283 CCATTTTCCCCATCAAATTCATGC 59.423 41.667 0.00 0.00 0.00 4.06
3573 4259 4.577283 GCCATTTTCCCCATCAAATTCATG 59.423 41.667 0.00 0.00 0.00 3.07
3574 4260 4.475747 AGCCATTTTCCCCATCAAATTCAT 59.524 37.500 0.00 0.00 0.00 2.57
3575 4261 3.845398 AGCCATTTTCCCCATCAAATTCA 59.155 39.130 0.00 0.00 0.00 2.57
3576 4262 4.492494 AGCCATTTTCCCCATCAAATTC 57.508 40.909 0.00 0.00 0.00 2.17
3577 4263 4.932911 AAGCCATTTTCCCCATCAAATT 57.067 36.364 0.00 0.00 0.00 1.82
3578 4264 6.385766 TTTAAGCCATTTTCCCCATCAAAT 57.614 33.333 0.00 0.00 0.00 2.32
3579 4265 5.832539 TTTAAGCCATTTTCCCCATCAAA 57.167 34.783 0.00 0.00 0.00 2.69
3580 4266 5.832539 TTTTAAGCCATTTTCCCCATCAA 57.167 34.783 0.00 0.00 0.00 2.57
3581 4267 6.385766 AATTTTAAGCCATTTTCCCCATCA 57.614 33.333 0.00 0.00 0.00 3.07
3582 4268 7.334858 TGTAATTTTAAGCCATTTTCCCCATC 58.665 34.615 0.00 0.00 0.00 3.51
3583 4269 7.264294 TGTAATTTTAAGCCATTTTCCCCAT 57.736 32.000 0.00 0.00 0.00 4.00
3584 4270 6.688073 TGTAATTTTAAGCCATTTTCCCCA 57.312 33.333 0.00 0.00 0.00 4.96
3585 4271 7.987750 TTTGTAATTTTAAGCCATTTTCCCC 57.012 32.000 0.00 0.00 0.00 4.81
3608 4294 8.518430 AACTTTAAGTTGGAATGGCAATTTTT 57.482 26.923 9.77 0.00 37.00 1.94
3609 4295 8.518430 AAACTTTAAGTTGGAATGGCAATTTT 57.482 26.923 11.35 0.00 38.66 1.82
3610 4296 9.791801 ATAAACTTTAAGTTGGAATGGCAATTT 57.208 25.926 11.35 0.00 38.66 1.82
3611 4297 9.791801 AATAAACTTTAAGTTGGAATGGCAATT 57.208 25.926 11.35 0.00 38.66 2.32
3612 4298 9.791801 AAATAAACTTTAAGTTGGAATGGCAAT 57.208 25.926 11.35 0.00 38.66 3.56
3613 4299 9.620259 AAAATAAACTTTAAGTTGGAATGGCAA 57.380 25.926 11.35 0.00 38.66 4.52
3614 4300 9.267084 GAAAATAAACTTTAAGTTGGAATGGCA 57.733 29.630 11.35 0.00 38.66 4.92
3615 4301 9.267084 TGAAAATAAACTTTAAGTTGGAATGGC 57.733 29.630 11.35 0.47 38.66 4.40
3637 4323 9.934784 TCCTTCCTTTTCCATTATATCATGAAA 57.065 29.630 0.00 0.00 0.00 2.69
3675 4361 9.807649 GGCAATTTTGTTATCATGATACTCTTT 57.192 29.630 15.10 2.67 0.00 2.52
3676 4362 8.970020 TGGCAATTTTGTTATCATGATACTCTT 58.030 29.630 15.10 1.55 0.00 2.85
3677 4363 8.523915 TGGCAATTTTGTTATCATGATACTCT 57.476 30.769 15.10 0.00 0.00 3.24
3678 4364 9.188588 CATGGCAATTTTGTTATCATGATACTC 57.811 33.333 15.10 11.52 34.26 2.59
3679 4365 8.145767 CCATGGCAATTTTGTTATCATGATACT 58.854 33.333 15.10 0.00 34.26 2.12
3680 4366 7.927629 ACCATGGCAATTTTGTTATCATGATAC 59.072 33.333 15.10 10.76 34.26 2.24
3681 4367 7.927092 CACCATGGCAATTTTGTTATCATGATA 59.073 33.333 13.04 11.49 34.26 2.15
3682 4368 6.764085 CACCATGGCAATTTTGTTATCATGAT 59.236 34.615 13.04 13.81 34.26 2.45
3683 4369 6.107343 CACCATGGCAATTTTGTTATCATGA 58.893 36.000 13.04 0.00 34.26 3.07
3684 4370 5.220700 GCACCATGGCAATTTTGTTATCATG 60.221 40.000 13.04 0.00 0.00 3.07
3685 4371 4.877251 GCACCATGGCAATTTTGTTATCAT 59.123 37.500 13.04 0.00 0.00 2.45
3686 4372 4.252073 GCACCATGGCAATTTTGTTATCA 58.748 39.130 13.04 0.00 0.00 2.15
3687 4373 3.622612 GGCACCATGGCAATTTTGTTATC 59.377 43.478 13.04 0.00 43.14 1.75
3688 4374 3.263937 AGGCACCATGGCAATTTTGTTAT 59.736 39.130 13.04 0.00 46.46 1.89
3689 4375 2.636893 AGGCACCATGGCAATTTTGTTA 59.363 40.909 13.04 0.00 46.46 2.41
3690 4376 1.420891 AGGCACCATGGCAATTTTGTT 59.579 42.857 13.04 0.00 46.46 2.83
3691 4377 1.058284 AGGCACCATGGCAATTTTGT 58.942 45.000 13.04 0.00 46.46 2.83
3692 4378 2.188062 AAGGCACCATGGCAATTTTG 57.812 45.000 13.04 2.04 46.46 2.44
3693 4379 2.636893 TGTAAGGCACCATGGCAATTTT 59.363 40.909 13.04 3.01 46.46 1.82
3694 4380 2.255406 TGTAAGGCACCATGGCAATTT 58.745 42.857 13.04 4.52 46.46 1.82
3695 4381 1.935799 TGTAAGGCACCATGGCAATT 58.064 45.000 13.04 4.46 46.46 2.32
3696 4382 1.935799 TTGTAAGGCACCATGGCAAT 58.064 45.000 13.04 0.00 46.46 3.56
3697 4383 1.709578 TTTGTAAGGCACCATGGCAA 58.290 45.000 13.04 2.88 46.46 4.52
3698 4384 1.617850 CTTTTGTAAGGCACCATGGCA 59.382 47.619 13.04 0.00 46.46 4.92
3699 4385 1.066929 CCTTTTGTAAGGCACCATGGC 60.067 52.381 13.04 0.00 44.27 4.40
3709 4395 3.127030 GCCCTTCATCGACCTTTTGTAAG 59.873 47.826 0.00 0.00 0.00 2.34
3710 4396 3.078837 GCCCTTCATCGACCTTTTGTAA 58.921 45.455 0.00 0.00 0.00 2.41
3711 4397 2.617021 GGCCCTTCATCGACCTTTTGTA 60.617 50.000 0.00 0.00 0.00 2.41
3712 4398 1.534729 GCCCTTCATCGACCTTTTGT 58.465 50.000 0.00 0.00 0.00 2.83
3713 4399 0.811281 GGCCCTTCATCGACCTTTTG 59.189 55.000 0.00 0.00 0.00 2.44
3714 4400 0.698818 AGGCCCTTCATCGACCTTTT 59.301 50.000 0.00 0.00 0.00 2.27
3715 4401 0.698818 AAGGCCCTTCATCGACCTTT 59.301 50.000 0.00 0.00 37.45 3.11
3716 4402 0.253327 GAAGGCCCTTCATCGACCTT 59.747 55.000 18.74 1.17 43.33 3.50
3717 4403 0.618968 AGAAGGCCCTTCATCGACCT 60.619 55.000 24.89 0.00 42.37 3.85
3718 4404 0.179070 GAGAAGGCCCTTCATCGACC 60.179 60.000 24.89 3.70 42.37 4.79
3719 4405 0.179070 GGAGAAGGCCCTTCATCGAC 60.179 60.000 24.89 10.33 42.37 4.20
3720 4406 0.325671 AGGAGAAGGCCCTTCATCGA 60.326 55.000 24.89 0.00 42.37 3.59
3721 4407 0.543749 AAGGAGAAGGCCCTTCATCG 59.456 55.000 24.89 0.00 42.37 3.84
3722 4408 2.158740 GGTAAGGAGAAGGCCCTTCATC 60.159 54.545 24.89 17.57 42.63 2.92
3723 4409 1.847088 GGTAAGGAGAAGGCCCTTCAT 59.153 52.381 24.89 10.38 42.63 2.57
3724 4410 1.286248 GGTAAGGAGAAGGCCCTTCA 58.714 55.000 24.89 1.04 42.63 3.02
3725 4411 0.547075 GGGTAAGGAGAAGGCCCTTC 59.453 60.000 15.99 15.99 42.63 3.46
3726 4412 0.121402 AGGGTAAGGAGAAGGCCCTT 59.879 55.000 0.00 0.00 46.80 3.95
3727 4413 1.798171 AGGGTAAGGAGAAGGCCCT 59.202 57.895 0.00 0.00 44.32 5.19
3728 4414 1.344189 ACTAGGGTAAGGAGAAGGCCC 60.344 57.143 0.00 0.00 39.60 5.80
3729 4415 2.177811 ACTAGGGTAAGGAGAAGGCC 57.822 55.000 0.00 0.00 0.00 5.19
3730 4416 3.913509 ACTACTAGGGTAAGGAGAAGGC 58.086 50.000 0.00 0.00 31.30 4.35
3731 4417 6.850234 TGATACTACTAGGGTAAGGAGAAGG 58.150 44.000 0.00 0.00 31.30 3.46
3732 4418 6.431852 GCTGATACTACTAGGGTAAGGAGAAG 59.568 46.154 0.00 0.00 31.30 2.85
3733 4419 6.102910 AGCTGATACTACTAGGGTAAGGAGAA 59.897 42.308 0.00 0.00 31.30 2.87
3734 4420 5.611835 AGCTGATACTACTAGGGTAAGGAGA 59.388 44.000 0.00 0.00 31.30 3.71
3735 4421 5.883180 AGCTGATACTACTAGGGTAAGGAG 58.117 45.833 0.00 0.00 33.24 3.69
3736 4422 5.926580 AGCTGATACTACTAGGGTAAGGA 57.073 43.478 0.00 0.00 0.00 3.36
3737 4423 7.670559 ACATAAGCTGATACTACTAGGGTAAGG 59.329 40.741 0.00 0.00 0.00 2.69
3738 4424 8.638629 ACATAAGCTGATACTACTAGGGTAAG 57.361 38.462 0.00 0.00 0.00 2.34
3739 4425 9.075678 GAACATAAGCTGATACTACTAGGGTAA 57.924 37.037 0.00 0.00 0.00 2.85
3740 4426 8.446394 AGAACATAAGCTGATACTACTAGGGTA 58.554 37.037 0.00 0.00 0.00 3.69
3741 4427 7.299134 AGAACATAAGCTGATACTACTAGGGT 58.701 38.462 0.00 0.00 0.00 4.34
3742 4428 7.768807 AGAACATAAGCTGATACTACTAGGG 57.231 40.000 0.00 0.00 0.00 3.53
3743 4429 9.073475 AGAAGAACATAAGCTGATACTACTAGG 57.927 37.037 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.