Multiple sequence alignment - TraesCS4A01G017100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G017100 chr4A 100.000 2111 0 0 1 2111 11623868 11621758 0.000000e+00 3899
1 TraesCS4A01G017100 chr4A 87.805 410 36 7 855 1259 21844250 21844650 3.170000e-128 468
2 TraesCS4A01G017100 chr4A 85.106 423 44 13 861 1266 6033682 6033262 4.190000e-112 414
3 TraesCS4A01G017100 chr4A 87.037 216 26 2 141 355 692357615 692357829 2.090000e-60 243
4 TraesCS4A01G017100 chr7B 92.866 799 57 0 1313 2111 23727026 23727824 0.000000e+00 1160
5 TraesCS4A01G017100 chr7B 84.664 789 118 3 1314 2101 598420083 598420869 0.000000e+00 784
6 TraesCS4A01G017100 chr1B 90.613 799 75 0 1313 2111 570850440 570849642 0.000000e+00 1061
7 TraesCS4A01G017100 chr1B 81.395 731 120 6 1313 2040 368660868 368660151 1.090000e-162 582
8 TraesCS4A01G017100 chr3B 89.014 801 79 2 1311 2111 58464970 58464179 0.000000e+00 983
9 TraesCS4A01G017100 chr5B 85.769 780 109 2 1313 2091 603796596 603797374 0.000000e+00 824
10 TraesCS4A01G017100 chr4B 90.717 474 42 1 1638 2111 568588187 568587716 3.820000e-177 630
11 TraesCS4A01G017100 chr4B 93.030 330 23 0 1313 1642 568599577 568599248 1.130000e-132 483
12 TraesCS4A01G017100 chr4B 87.879 396 35 8 877 1263 579103366 579103757 8.880000e-124 453
13 TraesCS4A01G017100 chr4B 88.859 368 33 6 842 1207 570346595 570346956 1.490000e-121 446
14 TraesCS4A01G017100 chr4B 86.260 393 42 9 879 1263 579390550 579390938 1.170000e-112 416
15 TraesCS4A01G017100 chr4B 87.838 296 34 2 865 1158 604141362 604141657 1.550000e-91 346
16 TraesCS4A01G017100 chr4D 91.353 451 27 9 868 1315 456124197 456124638 6.440000e-170 606
17 TraesCS4A01G017100 chr4D 87.000 400 39 11 874 1261 477914189 477914587 2.490000e-119 438
18 TraesCS4A01G017100 chr4D 86.650 397 37 12 879 1263 463402298 463402690 1.940000e-115 425
19 TraesCS4A01G017100 chr4D 86.260 262 22 8 362 613 456123766 456124023 2.670000e-69 272
20 TraesCS4A01G017100 chr4D 80.905 199 26 10 1091 1282 444522482 444522675 1.690000e-31 147
21 TraesCS4A01G017100 chr6B 91.525 236 18 2 127 361 412573313 412573547 7.260000e-85 324
22 TraesCS4A01G017100 chr1A 91.139 237 21 0 129 365 261380680 261380444 2.610000e-84 322
23 TraesCS4A01G017100 chr1A 87.634 186 23 0 125 310 477428028 477427843 1.270000e-52 217
24 TraesCS4A01G017100 chr7D 91.371 197 17 0 161 357 427004845 427004649 9.600000e-69 270
25 TraesCS4A01G017100 chr5D 89.952 209 21 0 125 333 10516641 10516433 9.600000e-69 270
26 TraesCS4A01G017100 chr7A 90.148 203 20 0 158 360 244476653 244476855 4.470000e-67 265
27 TraesCS4A01G017100 chr2B 87.097 217 26 2 117 332 463226126 463225911 5.820000e-61 244
28 TraesCS4A01G017100 chr6D 86.014 143 9 2 158 300 437108276 437108407 2.180000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G017100 chr4A 11621758 11623868 2110 True 3899 3899 100.0000 1 2111 1 chr4A.!!$R2 2110
1 TraesCS4A01G017100 chr7B 23727026 23727824 798 False 1160 1160 92.8660 1313 2111 1 chr7B.!!$F1 798
2 TraesCS4A01G017100 chr7B 598420083 598420869 786 False 784 784 84.6640 1314 2101 1 chr7B.!!$F2 787
3 TraesCS4A01G017100 chr1B 570849642 570850440 798 True 1061 1061 90.6130 1313 2111 1 chr1B.!!$R2 798
4 TraesCS4A01G017100 chr1B 368660151 368660868 717 True 582 582 81.3950 1313 2040 1 chr1B.!!$R1 727
5 TraesCS4A01G017100 chr3B 58464179 58464970 791 True 983 983 89.0140 1311 2111 1 chr3B.!!$R1 800
6 TraesCS4A01G017100 chr5B 603796596 603797374 778 False 824 824 85.7690 1313 2091 1 chr5B.!!$F1 778
7 TraesCS4A01G017100 chr4D 456123766 456124638 872 False 439 606 88.8065 362 1315 2 chr4D.!!$F4 953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 898 0.032615 TTCAGTGCTTTGGTTGGGGT 60.033 50.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 1916 0.034059 CCCGTGCCATCATAGTCCTC 59.966 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.163630 TCAAAGAAGCCAAAACTGCAC 57.836 42.857 0.00 0.00 0.00 4.57
22 23 2.159114 TCAAAGAAGCCAAAACTGCACC 60.159 45.455 0.00 0.00 0.00 5.01
23 24 1.484038 AAGAAGCCAAAACTGCACCA 58.516 45.000 0.00 0.00 0.00 4.17
24 25 0.746659 AGAAGCCAAAACTGCACCAC 59.253 50.000 0.00 0.00 0.00 4.16
25 26 0.459489 GAAGCCAAAACTGCACCACA 59.541 50.000 0.00 0.00 0.00 4.17
26 27 0.175531 AAGCCAAAACTGCACCACAC 59.824 50.000 0.00 0.00 0.00 3.82
27 28 1.588667 GCCAAAACTGCACCACACG 60.589 57.895 0.00 0.00 0.00 4.49
28 29 1.065600 CCAAAACTGCACCACACGG 59.934 57.895 0.00 0.00 38.77 4.94
29 30 1.065600 CAAAACTGCACCACACGGG 59.934 57.895 0.00 0.00 44.81 5.28
38 39 2.978824 CCACACGGGTCTGGGTAG 59.021 66.667 0.00 0.00 0.00 3.18
39 40 2.656069 CCACACGGGTCTGGGTAGG 61.656 68.421 0.00 0.00 0.00 3.18
40 41 1.911766 CACACGGGTCTGGGTAGGT 60.912 63.158 0.00 0.00 0.00 3.08
41 42 0.612732 CACACGGGTCTGGGTAGGTA 60.613 60.000 0.00 0.00 0.00 3.08
42 43 0.114954 ACACGGGTCTGGGTAGGTAA 59.885 55.000 0.00 0.00 0.00 2.85
43 44 1.273438 ACACGGGTCTGGGTAGGTAAT 60.273 52.381 0.00 0.00 0.00 1.89
44 45 2.024080 ACACGGGTCTGGGTAGGTAATA 60.024 50.000 0.00 0.00 0.00 0.98
45 46 3.236896 CACGGGTCTGGGTAGGTAATAT 58.763 50.000 0.00 0.00 0.00 1.28
46 47 3.006537 CACGGGTCTGGGTAGGTAATATG 59.993 52.174 0.00 0.00 0.00 1.78
47 48 2.028385 CGGGTCTGGGTAGGTAATATGC 60.028 54.545 0.00 0.00 0.00 3.14
48 49 2.976882 GGGTCTGGGTAGGTAATATGCA 59.023 50.000 0.00 0.00 0.00 3.96
49 50 3.008049 GGGTCTGGGTAGGTAATATGCAG 59.992 52.174 0.00 0.00 0.00 4.41
50 51 3.008049 GGTCTGGGTAGGTAATATGCAGG 59.992 52.174 0.00 0.00 0.00 4.85
51 52 2.637872 TCTGGGTAGGTAATATGCAGGC 59.362 50.000 0.00 0.00 0.00 4.85
52 53 1.702957 TGGGTAGGTAATATGCAGGCC 59.297 52.381 0.00 0.00 0.00 5.19
53 54 1.702957 GGGTAGGTAATATGCAGGCCA 59.297 52.381 5.01 0.00 0.00 5.36
54 55 2.552373 GGGTAGGTAATATGCAGGCCAC 60.552 54.545 5.01 0.00 0.00 5.01
55 56 2.552373 GGTAGGTAATATGCAGGCCACC 60.552 54.545 5.01 0.00 0.00 4.61
56 57 1.221635 AGGTAATATGCAGGCCACCA 58.778 50.000 5.01 0.54 0.00 4.17
57 58 1.568597 AGGTAATATGCAGGCCACCAA 59.431 47.619 5.01 0.00 0.00 3.67
58 59 1.681264 GGTAATATGCAGGCCACCAAC 59.319 52.381 5.01 0.00 0.00 3.77
59 60 1.681264 GTAATATGCAGGCCACCAACC 59.319 52.381 5.01 0.00 0.00 3.77
60 61 1.037030 AATATGCAGGCCACCAACCG 61.037 55.000 5.01 0.00 0.00 4.44
78 79 4.606071 CGCAGCTAGCTTTCCTGT 57.394 55.556 16.46 0.00 42.61 4.00
79 80 2.084844 CGCAGCTAGCTTTCCTGTG 58.915 57.895 16.46 7.32 42.61 3.66
80 81 0.671781 CGCAGCTAGCTTTCCTGTGT 60.672 55.000 16.46 0.00 42.61 3.72
81 82 0.801251 GCAGCTAGCTTTCCTGTGTG 59.199 55.000 16.46 2.13 41.15 3.82
82 83 1.879796 GCAGCTAGCTTTCCTGTGTGT 60.880 52.381 16.46 0.00 41.15 3.72
83 84 2.612972 GCAGCTAGCTTTCCTGTGTGTA 60.613 50.000 16.46 0.00 41.15 2.90
84 85 2.996621 CAGCTAGCTTTCCTGTGTGTAC 59.003 50.000 16.46 0.00 0.00 2.90
85 86 2.028020 AGCTAGCTTTCCTGTGTGTACC 60.028 50.000 12.68 0.00 0.00 3.34
86 87 2.028020 GCTAGCTTTCCTGTGTGTACCT 60.028 50.000 7.70 0.00 0.00 3.08
87 88 3.557264 GCTAGCTTTCCTGTGTGTACCTT 60.557 47.826 7.70 0.00 0.00 3.50
88 89 3.127425 AGCTTTCCTGTGTGTACCTTC 57.873 47.619 0.00 0.00 0.00 3.46
89 90 2.706190 AGCTTTCCTGTGTGTACCTTCT 59.294 45.455 0.00 0.00 0.00 2.85
90 91 3.067833 GCTTTCCTGTGTGTACCTTCTC 58.932 50.000 0.00 0.00 0.00 2.87
91 92 3.244249 GCTTTCCTGTGTGTACCTTCTCT 60.244 47.826 0.00 0.00 0.00 3.10
92 93 4.310769 CTTTCCTGTGTGTACCTTCTCTG 58.689 47.826 0.00 0.00 0.00 3.35
93 94 1.618837 TCCTGTGTGTACCTTCTCTGC 59.381 52.381 0.00 0.00 0.00 4.26
94 95 1.620819 CCTGTGTGTACCTTCTCTGCT 59.379 52.381 0.00 0.00 0.00 4.24
95 96 2.826128 CCTGTGTGTACCTTCTCTGCTA 59.174 50.000 0.00 0.00 0.00 3.49
96 97 3.258372 CCTGTGTGTACCTTCTCTGCTAA 59.742 47.826 0.00 0.00 0.00 3.09
97 98 4.081420 CCTGTGTGTACCTTCTCTGCTAAT 60.081 45.833 0.00 0.00 0.00 1.73
98 99 4.820897 TGTGTGTACCTTCTCTGCTAATG 58.179 43.478 0.00 0.00 0.00 1.90
99 100 3.619038 GTGTGTACCTTCTCTGCTAATGC 59.381 47.826 0.00 0.00 40.20 3.56
121 122 9.719355 AATGCATATAGGTTATGTATGAAACGA 57.281 29.630 0.00 0.00 35.56 3.85
122 123 9.719355 ATGCATATAGGTTATGTATGAAACGAA 57.281 29.630 0.00 0.00 35.56 3.85
123 124 9.203421 TGCATATAGGTTATGTATGAAACGAAG 57.797 33.333 0.00 0.00 35.56 3.79
124 125 8.656849 GCATATAGGTTATGTATGAAACGAAGG 58.343 37.037 0.00 0.00 35.56 3.46
125 126 9.151471 CATATAGGTTATGTATGAAACGAAGGG 57.849 37.037 0.00 0.00 35.56 3.95
126 127 4.777463 AGGTTATGTATGAAACGAAGGGG 58.223 43.478 0.00 0.00 0.00 4.79
127 128 3.314357 GGTTATGTATGAAACGAAGGGGC 59.686 47.826 0.00 0.00 0.00 5.80
128 129 1.663695 ATGTATGAAACGAAGGGGCG 58.336 50.000 0.00 0.00 37.29 6.13
130 131 0.725117 GTATGAAACGAAGGGGCGTG 59.275 55.000 0.00 0.00 44.86 5.34
131 132 0.322322 TATGAAACGAAGGGGCGTGT 59.678 50.000 0.00 0.00 44.86 4.49
132 133 0.536460 ATGAAACGAAGGGGCGTGTT 60.536 50.000 0.00 0.00 44.86 3.32
133 134 0.748729 TGAAACGAAGGGGCGTGTTT 60.749 50.000 0.00 0.00 44.86 2.83
134 135 0.317519 GAAACGAAGGGGCGTGTTTG 60.318 55.000 0.00 0.00 44.86 2.93
135 136 1.730451 AAACGAAGGGGCGTGTTTGG 61.730 55.000 0.00 0.00 44.86 3.28
136 137 2.593436 CGAAGGGGCGTGTTTGGT 60.593 61.111 0.00 0.00 0.00 3.67
137 138 2.190841 CGAAGGGGCGTGTTTGGTT 61.191 57.895 0.00 0.00 0.00 3.67
138 139 1.730451 CGAAGGGGCGTGTTTGGTTT 61.730 55.000 0.00 0.00 0.00 3.27
139 140 0.249280 GAAGGGGCGTGTTTGGTTTG 60.249 55.000 0.00 0.00 0.00 2.93
140 141 0.973496 AAGGGGCGTGTTTGGTTTGT 60.973 50.000 0.00 0.00 0.00 2.83
141 142 1.227118 GGGGCGTGTTTGGTTTGTG 60.227 57.895 0.00 0.00 0.00 3.33
142 143 1.668101 GGGGCGTGTTTGGTTTGTGA 61.668 55.000 0.00 0.00 0.00 3.58
143 144 0.526739 GGGCGTGTTTGGTTTGTGAC 60.527 55.000 0.00 0.00 0.00 3.67
144 145 0.454196 GGCGTGTTTGGTTTGTGACT 59.546 50.000 0.00 0.00 0.00 3.41
145 146 1.671845 GGCGTGTTTGGTTTGTGACTA 59.328 47.619 0.00 0.00 0.00 2.59
146 147 2.292292 GGCGTGTTTGGTTTGTGACTAT 59.708 45.455 0.00 0.00 0.00 2.12
147 148 3.296628 GCGTGTTTGGTTTGTGACTATG 58.703 45.455 0.00 0.00 0.00 2.23
148 149 3.296628 CGTGTTTGGTTTGTGACTATGC 58.703 45.455 0.00 0.00 0.00 3.14
149 150 3.242903 CGTGTTTGGTTTGTGACTATGCA 60.243 43.478 0.00 0.00 0.00 3.96
150 151 4.556501 CGTGTTTGGTTTGTGACTATGCAT 60.557 41.667 3.79 3.79 0.00 3.96
151 152 4.681025 GTGTTTGGTTTGTGACTATGCATG 59.319 41.667 10.16 1.82 0.00 4.06
152 153 3.574284 TTGGTTTGTGACTATGCATGC 57.426 42.857 11.82 11.82 0.00 4.06
153 154 1.818060 TGGTTTGTGACTATGCATGCC 59.182 47.619 16.68 0.00 0.00 4.40
154 155 1.818060 GGTTTGTGACTATGCATGCCA 59.182 47.619 16.68 1.80 0.00 4.92
155 156 2.415893 GGTTTGTGACTATGCATGCCAC 60.416 50.000 16.68 15.53 0.00 5.01
156 157 2.197283 TTGTGACTATGCATGCCACA 57.803 45.000 18.87 18.87 36.15 4.17
157 158 1.741528 TGTGACTATGCATGCCACAG 58.258 50.000 18.87 13.72 33.42 3.66
158 159 0.379669 GTGACTATGCATGCCACAGC 59.620 55.000 16.68 2.52 40.48 4.40
159 160 0.253894 TGACTATGCATGCCACAGCT 59.746 50.000 16.68 0.79 40.80 4.24
160 161 1.340308 TGACTATGCATGCCACAGCTT 60.340 47.619 16.68 0.00 40.80 3.74
161 162 1.065102 GACTATGCATGCCACAGCTTG 59.935 52.381 16.68 0.00 44.78 4.01
165 166 3.294750 CATGCCACAGCTTGCCAT 58.705 55.556 0.00 0.00 40.80 4.40
166 167 2.495809 CATGCCACAGCTTGCCATA 58.504 52.632 0.00 0.00 40.80 2.74
167 168 0.384309 CATGCCACAGCTTGCCATAG 59.616 55.000 0.00 0.00 40.80 2.23
168 169 1.389609 ATGCCACAGCTTGCCATAGC 61.390 55.000 0.00 0.00 40.80 2.97
176 177 1.818642 GCTTGCCATAGCTCCCTATG 58.181 55.000 0.00 4.19 46.84 2.23
177 178 1.818642 CTTGCCATAGCTCCCTATGC 58.181 55.000 0.00 2.98 46.24 3.14
178 179 0.401738 TTGCCATAGCTCCCTATGCC 59.598 55.000 0.00 0.00 46.24 4.40
179 180 0.474466 TGCCATAGCTCCCTATGCCT 60.474 55.000 0.00 0.00 46.24 4.75
180 181 1.203300 TGCCATAGCTCCCTATGCCTA 60.203 52.381 0.00 0.00 46.24 3.93
181 182 1.909302 GCCATAGCTCCCTATGCCTAA 59.091 52.381 0.00 0.00 46.24 2.69
182 183 2.305927 GCCATAGCTCCCTATGCCTAAA 59.694 50.000 0.00 0.00 46.24 1.85
183 184 3.870299 GCCATAGCTCCCTATGCCTAAAC 60.870 52.174 0.00 0.00 46.24 2.01
184 185 3.584848 CCATAGCTCCCTATGCCTAAACT 59.415 47.826 0.00 0.00 46.24 2.66
185 186 4.042187 CCATAGCTCCCTATGCCTAAACTT 59.958 45.833 0.00 0.00 46.24 2.66
186 187 5.248477 CCATAGCTCCCTATGCCTAAACTTA 59.752 44.000 0.00 0.00 46.24 2.24
187 188 4.965200 AGCTCCCTATGCCTAAACTTAG 57.035 45.455 0.00 0.00 0.00 2.18
188 189 3.071747 AGCTCCCTATGCCTAAACTTAGC 59.928 47.826 0.00 0.00 0.00 3.09
189 190 3.807561 GCTCCCTATGCCTAAACTTAGCC 60.808 52.174 0.00 0.00 0.00 3.93
190 191 3.648545 CTCCCTATGCCTAAACTTAGCCT 59.351 47.826 0.00 0.00 0.00 4.58
191 192 3.646637 TCCCTATGCCTAAACTTAGCCTC 59.353 47.826 0.00 0.00 0.00 4.70
192 193 3.648545 CCCTATGCCTAAACTTAGCCTCT 59.351 47.826 0.00 0.00 0.00 3.69
193 194 4.503991 CCCTATGCCTAAACTTAGCCTCTG 60.504 50.000 0.00 0.00 0.00 3.35
194 195 4.101741 CCTATGCCTAAACTTAGCCTCTGT 59.898 45.833 0.00 0.00 0.00 3.41
195 196 4.576330 ATGCCTAAACTTAGCCTCTGTT 57.424 40.909 0.00 0.00 0.00 3.16
196 197 4.367039 TGCCTAAACTTAGCCTCTGTTT 57.633 40.909 0.00 0.00 37.60 2.83
197 198 4.072131 TGCCTAAACTTAGCCTCTGTTTG 58.928 43.478 0.00 0.00 35.77 2.93
198 199 3.119814 GCCTAAACTTAGCCTCTGTTTGC 60.120 47.826 0.00 0.00 35.77 3.68
199 200 4.327680 CCTAAACTTAGCCTCTGTTTGCT 58.672 43.478 0.00 0.00 41.57 3.91
200 201 4.762251 CCTAAACTTAGCCTCTGTTTGCTT 59.238 41.667 0.00 0.00 39.00 3.91
201 202 5.241728 CCTAAACTTAGCCTCTGTTTGCTTT 59.758 40.000 0.00 0.00 39.00 3.51
202 203 6.430000 CCTAAACTTAGCCTCTGTTTGCTTTA 59.570 38.462 0.00 0.00 39.00 1.85
203 204 6.901081 AAACTTAGCCTCTGTTTGCTTTAT 57.099 33.333 0.00 0.00 39.00 1.40
204 205 5.886960 ACTTAGCCTCTGTTTGCTTTATG 57.113 39.130 0.00 0.00 39.00 1.90
205 206 4.156739 ACTTAGCCTCTGTTTGCTTTATGC 59.843 41.667 0.00 0.00 39.00 3.14
216 217 2.352503 GCTTTATGCAGGTGTTGTGG 57.647 50.000 0.00 0.00 42.31 4.17
217 218 1.669795 GCTTTATGCAGGTGTTGTGGC 60.670 52.381 0.00 0.00 42.31 5.01
218 219 0.595588 TTTATGCAGGTGTTGTGGCG 59.404 50.000 0.00 0.00 0.00 5.69
219 220 0.536233 TTATGCAGGTGTTGTGGCGT 60.536 50.000 0.00 0.00 0.00 5.68
220 221 1.233950 TATGCAGGTGTTGTGGCGTG 61.234 55.000 0.00 0.00 0.00 5.34
221 222 4.629115 GCAGGTGTTGTGGCGTGC 62.629 66.667 0.00 0.00 38.89 5.34
222 223 3.964875 CAGGTGTTGTGGCGTGCC 61.965 66.667 3.30 3.30 0.00 5.01
235 236 4.927782 GTGCCGCACCACTCACCA 62.928 66.667 12.80 0.00 33.02 4.17
236 237 3.952508 TGCCGCACCACTCACCAT 61.953 61.111 0.00 0.00 0.00 3.55
237 238 2.267642 GCCGCACCACTCACCATA 59.732 61.111 0.00 0.00 0.00 2.74
238 239 1.815421 GCCGCACCACTCACCATAG 60.815 63.158 0.00 0.00 0.00 2.23
239 240 1.153369 CCGCACCACTCACCATAGG 60.153 63.158 0.00 0.00 0.00 2.57
240 241 1.596934 CGCACCACTCACCATAGGT 59.403 57.895 0.00 0.00 35.62 3.08
241 242 0.036388 CGCACCACTCACCATAGGTT 60.036 55.000 0.00 0.00 31.02 3.50
242 243 1.453155 GCACCACTCACCATAGGTTG 58.547 55.000 0.00 0.00 31.02 3.77
243 244 1.453155 CACCACTCACCATAGGTTGC 58.547 55.000 0.00 0.00 31.02 4.17
244 245 1.003580 CACCACTCACCATAGGTTGCT 59.996 52.381 0.00 0.00 31.02 3.91
245 246 2.236146 CACCACTCACCATAGGTTGCTA 59.764 50.000 0.00 0.00 31.02 3.49
246 247 2.501723 ACCACTCACCATAGGTTGCTAG 59.498 50.000 0.00 0.00 31.02 3.42
247 248 2.501723 CCACTCACCATAGGTTGCTAGT 59.498 50.000 0.00 0.00 31.02 2.57
248 249 3.055094 CCACTCACCATAGGTTGCTAGTT 60.055 47.826 0.00 0.00 31.02 2.24
249 250 4.184629 CACTCACCATAGGTTGCTAGTTC 58.815 47.826 0.00 0.00 31.02 3.01
250 251 3.838317 ACTCACCATAGGTTGCTAGTTCA 59.162 43.478 0.00 0.00 31.02 3.18
251 252 4.471386 ACTCACCATAGGTTGCTAGTTCAT 59.529 41.667 0.00 0.00 31.02 2.57
252 253 5.045578 ACTCACCATAGGTTGCTAGTTCATT 60.046 40.000 0.00 0.00 31.02 2.57
253 254 5.815581 TCACCATAGGTTGCTAGTTCATTT 58.184 37.500 0.00 0.00 31.02 2.32
254 255 6.245408 TCACCATAGGTTGCTAGTTCATTTT 58.755 36.000 0.00 0.00 31.02 1.82
255 256 6.719370 TCACCATAGGTTGCTAGTTCATTTTT 59.281 34.615 0.00 0.00 31.02 1.94
256 257 7.029563 CACCATAGGTTGCTAGTTCATTTTTC 58.970 38.462 0.00 0.00 31.02 2.29
257 258 6.719370 ACCATAGGTTGCTAGTTCATTTTTCA 59.281 34.615 0.00 0.00 27.29 2.69
258 259 7.029563 CCATAGGTTGCTAGTTCATTTTTCAC 58.970 38.462 0.00 0.00 0.00 3.18
259 260 5.108385 AGGTTGCTAGTTCATTTTTCACG 57.892 39.130 0.00 0.00 0.00 4.35
260 261 3.668656 GGTTGCTAGTTCATTTTTCACGC 59.331 43.478 0.00 0.00 0.00 5.34
261 262 3.552604 TGCTAGTTCATTTTTCACGCC 57.447 42.857 0.00 0.00 0.00 5.68
262 263 2.881513 TGCTAGTTCATTTTTCACGCCA 59.118 40.909 0.00 0.00 0.00 5.69
263 264 3.234386 GCTAGTTCATTTTTCACGCCAC 58.766 45.455 0.00 0.00 0.00 5.01
264 265 3.304391 GCTAGTTCATTTTTCACGCCACA 60.304 43.478 0.00 0.00 0.00 4.17
265 266 3.791973 AGTTCATTTTTCACGCCACAA 57.208 38.095 0.00 0.00 0.00 3.33
266 267 3.443976 AGTTCATTTTTCACGCCACAAC 58.556 40.909 0.00 0.00 0.00 3.32
267 268 3.130340 AGTTCATTTTTCACGCCACAACT 59.870 39.130 0.00 0.00 0.00 3.16
268 269 3.347958 TCATTTTTCACGCCACAACTC 57.652 42.857 0.00 0.00 0.00 3.01
269 270 2.043411 CATTTTTCACGCCACAACTCG 58.957 47.619 0.00 0.00 0.00 4.18
270 271 1.088306 TTTTTCACGCCACAACTCGT 58.912 45.000 0.00 0.00 39.79 4.18
271 272 0.653636 TTTTCACGCCACAACTCGTC 59.346 50.000 0.00 0.00 36.73 4.20
272 273 1.484227 TTTCACGCCACAACTCGTCG 61.484 55.000 0.00 0.00 36.73 5.12
273 274 2.339100 TTCACGCCACAACTCGTCGA 62.339 55.000 0.00 0.00 36.73 4.20
274 275 1.947146 CACGCCACAACTCGTCGAA 60.947 57.895 0.00 0.00 36.73 3.71
275 276 1.227031 ACGCCACAACTCGTCGAAA 60.227 52.632 0.00 0.00 33.09 3.46
276 277 1.213094 ACGCCACAACTCGTCGAAAG 61.213 55.000 0.00 0.00 33.09 2.62
277 278 1.213094 CGCCACAACTCGTCGAAAGT 61.213 55.000 0.00 0.00 0.00 2.66
278 279 0.232303 GCCACAACTCGTCGAAAGTG 59.768 55.000 12.06 12.06 0.00 3.16
279 280 1.567504 CCACAACTCGTCGAAAGTGT 58.432 50.000 15.71 9.04 0.00 3.55
280 281 1.257936 CCACAACTCGTCGAAAGTGTG 59.742 52.381 18.69 18.69 0.00 3.82
281 282 1.257936 CACAACTCGTCGAAAGTGTGG 59.742 52.381 18.20 5.32 0.00 4.17
282 283 0.232303 CAACTCGTCGAAAGTGTGGC 59.768 55.000 2.70 0.00 0.00 5.01
283 284 1.213094 AACTCGTCGAAAGTGTGGCG 61.213 55.000 2.70 0.00 0.00 5.69
284 285 3.000080 CTCGTCGAAAGTGTGGCGC 62.000 63.158 0.00 0.00 0.00 6.53
285 286 3.036084 CGTCGAAAGTGTGGCGCT 61.036 61.111 7.64 0.00 0.00 5.92
286 287 2.853914 GTCGAAAGTGTGGCGCTC 59.146 61.111 7.64 1.21 0.00 5.03
287 288 2.733218 TCGAAAGTGTGGCGCTCG 60.733 61.111 7.64 7.03 0.00 5.03
288 289 3.036084 CGAAAGTGTGGCGCTCGT 61.036 61.111 7.64 0.00 0.00 4.18
289 290 2.594962 CGAAAGTGTGGCGCTCGTT 61.595 57.895 7.64 0.00 0.00 3.85
290 291 1.647084 GAAAGTGTGGCGCTCGTTT 59.353 52.632 7.64 5.31 0.00 3.60
291 292 0.384353 GAAAGTGTGGCGCTCGTTTC 60.384 55.000 7.64 10.35 0.00 2.78
292 293 2.101209 AAAGTGTGGCGCTCGTTTCG 62.101 55.000 7.64 0.00 0.00 3.46
293 294 3.335534 GTGTGGCGCTCGTTTCGT 61.336 61.111 7.64 0.00 0.00 3.85
294 295 2.586635 TGTGGCGCTCGTTTCGTT 60.587 55.556 7.64 0.00 0.00 3.85
295 296 2.170273 GTGGCGCTCGTTTCGTTC 59.830 61.111 7.64 0.00 0.00 3.95
296 297 3.399770 TGGCGCTCGTTTCGTTCG 61.400 61.111 7.64 0.00 0.00 3.95
297 298 4.771812 GGCGCTCGTTTCGTTCGC 62.772 66.667 7.64 16.41 43.04 4.70
298 299 4.771812 GCGCTCGTTTCGTTCGCC 62.772 66.667 0.00 3.71 40.28 5.54
299 300 4.464043 CGCTCGTTTCGTTCGCCG 62.464 66.667 0.00 0.00 38.13 6.46
300 301 4.771812 GCTCGTTTCGTTCGCCGC 62.772 66.667 0.00 0.00 36.19 6.53
301 302 3.399770 CTCGTTTCGTTCGCCGCA 61.400 61.111 0.00 0.00 36.19 5.69
302 303 3.609422 CTCGTTTCGTTCGCCGCAC 62.609 63.158 0.00 0.00 36.19 5.34
303 304 4.712873 CGTTTCGTTCGCCGCACC 62.713 66.667 0.00 0.00 36.19 5.01
304 305 3.343421 GTTTCGTTCGCCGCACCT 61.343 61.111 0.00 0.00 36.19 4.00
305 306 2.589442 TTTCGTTCGCCGCACCTT 60.589 55.556 0.00 0.00 36.19 3.50
306 307 2.600475 TTTCGTTCGCCGCACCTTC 61.600 57.895 0.00 0.00 36.19 3.46
334 335 3.853330 CATCTTCGGCGTGGCGTG 61.853 66.667 15.55 9.90 0.00 5.34
335 336 4.373116 ATCTTCGGCGTGGCGTGT 62.373 61.111 15.55 0.00 0.00 4.49
336 337 3.876589 ATCTTCGGCGTGGCGTGTT 62.877 57.895 15.55 3.16 0.00 3.32
337 338 4.072088 CTTCGGCGTGGCGTGTTC 62.072 66.667 15.55 0.00 0.00 3.18
338 339 4.595538 TTCGGCGTGGCGTGTTCT 62.596 61.111 15.55 0.00 0.00 3.01
342 343 4.012895 GCGTGGCGTGTTCTGGTG 62.013 66.667 0.00 0.00 0.00 4.17
343 344 2.279851 CGTGGCGTGTTCTGGTGA 60.280 61.111 0.00 0.00 0.00 4.02
344 345 1.667830 CGTGGCGTGTTCTGGTGAT 60.668 57.895 0.00 0.00 0.00 3.06
345 346 0.389296 CGTGGCGTGTTCTGGTGATA 60.389 55.000 0.00 0.00 0.00 2.15
346 347 1.803334 GTGGCGTGTTCTGGTGATAA 58.197 50.000 0.00 0.00 0.00 1.75
347 348 2.147958 GTGGCGTGTTCTGGTGATAAA 58.852 47.619 0.00 0.00 0.00 1.40
348 349 2.747446 GTGGCGTGTTCTGGTGATAAAT 59.253 45.455 0.00 0.00 0.00 1.40
349 350 3.006940 TGGCGTGTTCTGGTGATAAATC 58.993 45.455 0.00 0.00 0.00 2.17
350 351 3.006940 GGCGTGTTCTGGTGATAAATCA 58.993 45.455 0.00 0.00 0.00 2.57
351 352 3.438781 GGCGTGTTCTGGTGATAAATCAA 59.561 43.478 0.00 0.00 38.75 2.57
352 353 4.083003 GGCGTGTTCTGGTGATAAATCAAA 60.083 41.667 0.00 0.00 38.75 2.69
353 354 4.851558 GCGTGTTCTGGTGATAAATCAAAC 59.148 41.667 0.00 0.00 38.75 2.93
354 355 5.561919 GCGTGTTCTGGTGATAAATCAAACA 60.562 40.000 4.57 4.57 38.75 2.83
355 356 5.851177 CGTGTTCTGGTGATAAATCAAACAC 59.149 40.000 19.28 19.28 43.92 3.32
356 357 5.851177 GTGTTCTGGTGATAAATCAAACACG 59.149 40.000 16.55 6.13 41.20 4.49
357 358 4.678509 TCTGGTGATAAATCAAACACGC 57.321 40.909 0.00 0.00 38.75 5.34
358 359 3.438781 TCTGGTGATAAATCAAACACGCC 59.561 43.478 0.00 0.00 38.75 5.68
359 360 2.490115 TGGTGATAAATCAAACACGCCC 59.510 45.455 0.00 0.00 38.75 6.13
360 361 2.490115 GGTGATAAATCAAACACGCCCA 59.510 45.455 0.00 0.00 38.75 5.36
396 397 2.515429 AGGCCAATCATATCCAACCAGT 59.485 45.455 5.01 0.00 0.00 4.00
400 401 4.686944 GCCAATCATATCCAACCAGTCAGA 60.687 45.833 0.00 0.00 0.00 3.27
417 418 4.654262 AGTCAGAGAAGTCCCAAACAGTTA 59.346 41.667 0.00 0.00 0.00 2.24
428 429 6.209788 AGTCCCAAACAGTTAGAGTTAGAGAG 59.790 42.308 0.00 0.00 0.00 3.20
430 431 6.553852 TCCCAAACAGTTAGAGTTAGAGAGTT 59.446 38.462 0.00 0.00 0.00 3.01
431 432 6.869388 CCCAAACAGTTAGAGTTAGAGAGTTC 59.131 42.308 0.00 0.00 0.00 3.01
434 435 9.615295 CAAACAGTTAGAGTTAGAGAGTTCTAC 57.385 37.037 0.00 0.00 35.67 2.59
437 438 9.657419 ACAGTTAGAGTTAGAGAGTTCTACTAC 57.343 37.037 0.00 0.00 35.67 2.73
440 441 9.874205 GTTAGAGTTAGAGAGTTCTACTACAGA 57.126 37.037 0.00 0.00 35.67 3.41
462 463 3.359950 AGAAGCAATCCATCAAAGACCC 58.640 45.455 0.00 0.00 0.00 4.46
473 474 2.616960 TCAAAGACCCGTCGAATCATG 58.383 47.619 0.00 0.00 34.09 3.07
482 483 2.222729 CCGTCGAATCATGAACGAAACC 60.223 50.000 22.98 13.74 37.77 3.27
494 505 7.482474 TCATGAACGAAACCACTACGAATATA 58.518 34.615 0.00 0.00 0.00 0.86
547 558 8.905702 CAATTTTCATCAGTTTTAAAGAGACCG 58.094 33.333 0.00 0.00 0.00 4.79
549 560 5.223449 TCATCAGTTTTAAAGAGACCGGT 57.777 39.130 6.92 6.92 0.00 5.28
580 591 9.846248 GTACTGAATATGATGAAACTTTTGCTT 57.154 29.630 0.00 0.00 0.00 3.91
603 614 5.869753 TTCATAGCAGAAGAAACAAGCTC 57.130 39.130 0.00 0.00 36.80 4.09
617 628 3.406764 ACAAGCTCTGTTTCATCAGACC 58.593 45.455 0.00 0.00 39.20 3.85
619 630 3.331478 AGCTCTGTTTCATCAGACCTG 57.669 47.619 0.00 0.00 39.20 4.00
621 632 3.326006 AGCTCTGTTTCATCAGACCTGAA 59.674 43.478 3.62 0.00 43.58 3.02
622 633 3.683822 GCTCTGTTTCATCAGACCTGAAG 59.316 47.826 3.62 0.00 43.58 3.02
623 634 4.802248 GCTCTGTTTCATCAGACCTGAAGT 60.802 45.833 3.62 0.00 43.58 3.01
624 635 5.567623 GCTCTGTTTCATCAGACCTGAAGTA 60.568 44.000 3.62 0.00 43.58 2.24
625 636 6.611613 TCTGTTTCATCAGACCTGAAGTAT 57.388 37.500 3.62 0.00 43.58 2.12
626 637 7.631594 GCTCTGTTTCATCAGACCTGAAGTATA 60.632 40.741 3.62 0.00 43.58 1.47
628 639 8.035394 TCTGTTTCATCAGACCTGAAGTATAAC 58.965 37.037 3.62 7.08 43.58 1.89
629 640 7.676004 TGTTTCATCAGACCTGAAGTATAACA 58.324 34.615 3.62 9.06 43.58 2.41
631 642 8.821894 GTTTCATCAGACCTGAAGTATAACATC 58.178 37.037 3.62 0.00 43.58 3.06
632 643 7.660030 TCATCAGACCTGAAGTATAACATCA 57.340 36.000 3.62 0.00 43.58 3.07
635 646 6.640518 TCAGACCTGAAGTATAACATCAACC 58.359 40.000 0.00 0.00 36.53 3.77
638 649 6.670027 AGACCTGAAGTATAACATCAACCTCT 59.330 38.462 0.00 0.00 0.00 3.69
639 650 7.181125 AGACCTGAAGTATAACATCAACCTCTT 59.819 37.037 0.00 0.00 0.00 2.85
640 651 7.331791 ACCTGAAGTATAACATCAACCTCTTC 58.668 38.462 0.00 0.00 0.00 2.87
643 654 7.331026 TGAAGTATAACATCAACCTCTTCAGG 58.669 38.462 0.00 0.00 46.87 3.86
644 655 5.675538 AGTATAACATCAACCTCTTCAGGC 58.324 41.667 0.00 0.00 45.05 4.85
645 656 2.206576 AACATCAACCTCTTCAGGCC 57.793 50.000 0.00 0.00 45.05 5.19
646 657 1.366319 ACATCAACCTCTTCAGGCCT 58.634 50.000 0.00 0.00 45.05 5.19
649 660 1.661463 TCAACCTCTTCAGGCCTGAT 58.339 50.000 35.42 18.23 45.05 2.90
651 662 1.280133 CAACCTCTTCAGGCCTGATGA 59.720 52.381 36.13 36.13 45.05 2.92
652 663 1.661463 ACCTCTTCAGGCCTGATGAA 58.339 50.000 37.02 24.08 45.05 2.57
661 672 5.649782 TCAGGCCTGATGAAGAATTTTTC 57.350 39.130 32.00 1.81 34.14 2.29
665 676 4.628766 GGCCTGATGAAGAATTTTTCAAGC 59.371 41.667 14.66 13.92 40.21 4.01
666 677 5.476614 GCCTGATGAAGAATTTTTCAAGCT 58.523 37.500 14.66 0.00 40.21 3.74
667 678 5.347907 GCCTGATGAAGAATTTTTCAAGCTG 59.652 40.000 14.66 12.66 40.21 4.24
669 680 6.365247 CCTGATGAAGAATTTTTCAAGCTGTG 59.635 38.462 14.66 3.92 40.21 3.66
670 681 6.808829 TGATGAAGAATTTTTCAAGCTGTGT 58.191 32.000 14.66 0.00 40.21 3.72
671 682 7.267128 TGATGAAGAATTTTTCAAGCTGTGTT 58.733 30.769 14.66 0.00 40.21 3.32
672 683 7.765360 TGATGAAGAATTTTTCAAGCTGTGTTT 59.235 29.630 14.66 0.00 40.21 2.83
673 684 7.524294 TGAAGAATTTTTCAAGCTGTGTTTC 57.476 32.000 8.86 0.00 34.32 2.78
675 686 7.765360 TGAAGAATTTTTCAAGCTGTGTTTCAT 59.235 29.630 8.86 0.00 34.32 2.57
676 687 7.704789 AGAATTTTTCAAGCTGTGTTTCATC 57.295 32.000 0.00 0.00 0.00 2.92
677 688 7.495055 AGAATTTTTCAAGCTGTGTTTCATCT 58.505 30.769 0.00 0.00 0.00 2.90
678 689 7.437267 AGAATTTTTCAAGCTGTGTTTCATCTG 59.563 33.333 0.00 0.00 0.00 2.90
679 690 5.833406 TTTTCAAGCTGTGTTTCATCTGA 57.167 34.783 0.00 0.00 0.00 3.27
681 692 5.618056 TTCAAGCTGTGTTTCATCTGATC 57.382 39.130 0.00 0.00 0.00 2.92
682 693 4.903054 TCAAGCTGTGTTTCATCTGATCT 58.097 39.130 0.00 0.00 0.00 2.75
683 694 4.694037 TCAAGCTGTGTTTCATCTGATCTG 59.306 41.667 0.00 0.00 0.00 2.90
684 695 4.548451 AGCTGTGTTTCATCTGATCTGA 57.452 40.909 4.63 4.63 0.00 3.27
685 696 4.903054 AGCTGTGTTTCATCTGATCTGAA 58.097 39.130 6.37 0.00 0.00 3.02
686 697 4.936411 AGCTGTGTTTCATCTGATCTGAAG 59.064 41.667 6.37 2.42 34.33 3.02
687 698 4.694509 GCTGTGTTTCATCTGATCTGAAGT 59.305 41.667 6.37 0.00 34.33 3.01
691 702 9.591792 CTGTGTTTCATCTGATCTGAAGTATAA 57.408 33.333 6.37 0.00 34.33 0.98
692 703 9.371136 TGTGTTTCATCTGATCTGAAGTATAAC 57.629 33.333 6.37 8.93 34.33 1.89
698 709 9.755804 TCATCTGATCTGAAGTATAACATCAAC 57.244 33.333 6.37 0.00 0.00 3.18
699 710 8.986847 CATCTGATCTGAAGTATAACATCAACC 58.013 37.037 6.37 0.00 0.00 3.77
701 712 8.417106 TCTGATCTGAAGTATAACATCAACCTC 58.583 37.037 0.00 0.00 0.00 3.85
702 713 8.311395 TGATCTGAAGTATAACATCAACCTCT 57.689 34.615 0.00 0.00 0.00 3.69
705 716 8.134202 TCTGAAGTATAACATCAACCTCTTCA 57.866 34.615 0.00 0.00 38.01 3.02
706 717 8.593679 TCTGAAGTATAACATCAACCTCTTCAA 58.406 33.333 0.00 0.00 39.19 2.69
707 718 9.219603 CTGAAGTATAACATCAACCTCTTCAAA 57.780 33.333 0.00 0.00 39.19 2.69
708 719 9.219603 TGAAGTATAACATCAACCTCTTCAAAG 57.780 33.333 0.00 0.00 37.61 2.77
710 721 5.904362 ATAACATCAACCTCTTCAAAGCC 57.096 39.130 0.00 0.00 0.00 4.35
711 722 3.515602 ACATCAACCTCTTCAAAGCCT 57.484 42.857 0.00 0.00 0.00 4.58
712 723 4.640771 ACATCAACCTCTTCAAAGCCTA 57.359 40.909 0.00 0.00 0.00 3.93
713 724 4.985538 ACATCAACCTCTTCAAAGCCTAA 58.014 39.130 0.00 0.00 0.00 2.69
714 725 5.574188 ACATCAACCTCTTCAAAGCCTAAT 58.426 37.500 0.00 0.00 0.00 1.73
715 726 5.416952 ACATCAACCTCTTCAAAGCCTAATG 59.583 40.000 0.00 0.00 0.00 1.90
716 727 5.241403 TCAACCTCTTCAAAGCCTAATGA 57.759 39.130 0.00 0.00 0.00 2.57
717 728 5.630121 TCAACCTCTTCAAAGCCTAATGAA 58.370 37.500 0.00 0.00 34.57 2.57
727 738 8.519492 TTCAAAGCCTAATGAAGAAATTTTCG 57.481 30.769 3.57 0.00 32.14 3.46
728 739 7.657336 TCAAAGCCTAATGAAGAAATTTTCGT 58.343 30.769 3.57 0.30 34.02 3.85
729 740 7.807907 TCAAAGCCTAATGAAGAAATTTTCGTC 59.192 33.333 15.46 15.46 38.43 4.20
730 741 7.454260 AAGCCTAATGAAGAAATTTTCGTCT 57.546 32.000 20.63 8.60 38.69 4.18
731 742 7.454260 AGCCTAATGAAGAAATTTTCGTCTT 57.546 32.000 20.63 14.17 38.69 3.01
732 743 7.886338 AGCCTAATGAAGAAATTTTCGTCTTT 58.114 30.769 20.63 20.86 38.69 2.52
733 744 8.360390 AGCCTAATGAAGAAATTTTCGTCTTTT 58.640 29.630 21.88 17.54 38.69 2.27
734 745 8.427774 GCCTAATGAAGAAATTTTCGTCTTTTG 58.572 33.333 21.88 19.89 38.69 2.44
735 746 9.463443 CCTAATGAAGAAATTTTCGTCTTTTGT 57.537 29.630 21.88 8.90 38.69 2.83
738 749 9.463443 AATGAAGAAATTTTCGTCTTTTGTAGG 57.537 29.630 20.63 0.00 38.69 3.18
739 750 7.422399 TGAAGAAATTTTCGTCTTTTGTAGGG 58.578 34.615 20.63 0.00 38.69 3.53
740 751 6.327279 AGAAATTTTCGTCTTTTGTAGGGG 57.673 37.500 3.57 0.00 34.02 4.79
741 752 5.831525 AGAAATTTTCGTCTTTTGTAGGGGT 59.168 36.000 3.57 0.00 34.02 4.95
742 753 5.447624 AATTTTCGTCTTTTGTAGGGGTG 57.552 39.130 0.00 0.00 0.00 4.61
743 754 2.554370 TTCGTCTTTTGTAGGGGTGG 57.446 50.000 0.00 0.00 0.00 4.61
744 755 1.719529 TCGTCTTTTGTAGGGGTGGA 58.280 50.000 0.00 0.00 0.00 4.02
745 756 2.262637 TCGTCTTTTGTAGGGGTGGAT 58.737 47.619 0.00 0.00 0.00 3.41
746 757 2.027561 TCGTCTTTTGTAGGGGTGGATG 60.028 50.000 0.00 0.00 0.00 3.51
747 758 2.723273 GTCTTTTGTAGGGGTGGATGG 58.277 52.381 0.00 0.00 0.00 3.51
748 759 2.041216 GTCTTTTGTAGGGGTGGATGGT 59.959 50.000 0.00 0.00 0.00 3.55
749 760 2.307686 TCTTTTGTAGGGGTGGATGGTC 59.692 50.000 0.00 0.00 0.00 4.02
750 761 2.053747 TTTGTAGGGGTGGATGGTCT 57.946 50.000 0.00 0.00 0.00 3.85
751 762 2.053747 TTGTAGGGGTGGATGGTCTT 57.946 50.000 0.00 0.00 0.00 3.01
752 763 2.053747 TGTAGGGGTGGATGGTCTTT 57.946 50.000 0.00 0.00 0.00 2.52
753 764 1.913419 TGTAGGGGTGGATGGTCTTTC 59.087 52.381 0.00 0.00 0.00 2.62
754 765 1.212195 GTAGGGGTGGATGGTCTTTCC 59.788 57.143 0.00 0.00 0.00 3.13
772 783 1.134580 TCCAGTTAGCATCAGAGCAGC 60.135 52.381 0.00 0.00 36.85 5.25
774 785 2.353323 CAGTTAGCATCAGAGCAGCAA 58.647 47.619 0.00 0.00 36.85 3.91
779 790 5.826737 AGTTAGCATCAGAGCAGCAATAAAT 59.173 36.000 0.00 0.00 36.85 1.40
780 791 4.832590 AGCATCAGAGCAGCAATAAATC 57.167 40.909 0.00 0.00 36.85 2.17
782 793 4.515944 AGCATCAGAGCAGCAATAAATCTC 59.484 41.667 0.00 0.00 36.85 2.75
784 795 5.749620 CATCAGAGCAGCAATAAATCTCAC 58.250 41.667 0.00 0.00 0.00 3.51
786 797 4.633126 TCAGAGCAGCAATAAATCTCACAC 59.367 41.667 0.00 0.00 0.00 3.82
787 798 3.620374 AGAGCAGCAATAAATCTCACACG 59.380 43.478 0.00 0.00 0.00 4.49
788 799 3.599343 AGCAGCAATAAATCTCACACGA 58.401 40.909 0.00 0.00 0.00 4.35
791 802 2.939103 AGCAATAAATCTCACACGAGCC 59.061 45.455 0.00 0.00 39.30 4.70
792 803 2.032178 GCAATAAATCTCACACGAGCCC 59.968 50.000 0.00 0.00 39.30 5.19
793 804 3.270027 CAATAAATCTCACACGAGCCCA 58.730 45.455 0.00 0.00 39.30 5.36
794 805 2.672961 TAAATCTCACACGAGCCCAG 57.327 50.000 0.00 0.00 39.30 4.45
795 806 0.687354 AAATCTCACACGAGCCCAGT 59.313 50.000 0.00 0.00 39.30 4.00
796 807 0.687354 AATCTCACACGAGCCCAGTT 59.313 50.000 0.00 0.00 39.30 3.16
797 808 0.247736 ATCTCACACGAGCCCAGTTC 59.752 55.000 0.00 0.00 39.30 3.01
798 809 1.112916 TCTCACACGAGCCCAGTTCA 61.113 55.000 0.00 0.00 39.30 3.18
799 810 0.668706 CTCACACGAGCCCAGTTCAG 60.669 60.000 0.00 0.00 31.00 3.02
800 811 1.069765 CACACGAGCCCAGTTCAGT 59.930 57.895 0.00 0.00 0.00 3.41
801 812 0.532862 CACACGAGCCCAGTTCAGTT 60.533 55.000 0.00 0.00 0.00 3.16
802 813 0.180406 ACACGAGCCCAGTTCAGTTT 59.820 50.000 0.00 0.00 0.00 2.66
803 814 1.308998 CACGAGCCCAGTTCAGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
804 815 2.158871 ACACGAGCCCAGTTCAGTTTTA 60.159 45.455 0.00 0.00 0.00 1.52
805 816 3.074412 CACGAGCCCAGTTCAGTTTTAT 58.926 45.455 0.00 0.00 0.00 1.40
806 817 3.502211 CACGAGCCCAGTTCAGTTTTATT 59.498 43.478 0.00 0.00 0.00 1.40
807 818 3.751698 ACGAGCCCAGTTCAGTTTTATTC 59.248 43.478 0.00 0.00 0.00 1.75
808 819 3.751175 CGAGCCCAGTTCAGTTTTATTCA 59.249 43.478 0.00 0.00 0.00 2.57
809 820 4.142816 CGAGCCCAGTTCAGTTTTATTCAG 60.143 45.833 0.00 0.00 0.00 3.02
810 821 4.729868 AGCCCAGTTCAGTTTTATTCAGT 58.270 39.130 0.00 0.00 0.00 3.41
811 822 5.140454 AGCCCAGTTCAGTTTTATTCAGTT 58.860 37.500 0.00 0.00 0.00 3.16
812 823 5.241728 AGCCCAGTTCAGTTTTATTCAGTTC 59.758 40.000 0.00 0.00 0.00 3.01
813 824 5.241728 GCCCAGTTCAGTTTTATTCAGTTCT 59.758 40.000 0.00 0.00 0.00 3.01
814 825 6.672147 CCCAGTTCAGTTTTATTCAGTTCTG 58.328 40.000 0.00 0.00 0.00 3.02
815 826 6.486657 CCCAGTTCAGTTTTATTCAGTTCTGA 59.513 38.462 0.00 0.00 0.00 3.27
821 832 8.327941 TCAGTTTTATTCAGTTCTGATGAAGG 57.672 34.615 3.28 0.00 39.86 3.46
822 833 8.156820 TCAGTTTTATTCAGTTCTGATGAAGGA 58.843 33.333 3.28 0.00 39.86 3.36
836 847 1.933247 GAAGGAGACATCAGCCTTCG 58.067 55.000 14.14 0.00 45.62 3.79
837 848 1.205893 GAAGGAGACATCAGCCTTCGT 59.794 52.381 14.14 0.00 45.62 3.85
838 849 1.270907 AGGAGACATCAGCCTTCGTT 58.729 50.000 0.00 0.00 0.00 3.85
839 850 1.066573 AGGAGACATCAGCCTTCGTTG 60.067 52.381 0.00 0.00 0.00 4.10
842 853 1.160137 GACATCAGCCTTCGTTGCTT 58.840 50.000 0.00 0.00 36.81 3.91
844 855 1.271054 ACATCAGCCTTCGTTGCTTCT 60.271 47.619 0.00 0.00 36.81 2.85
845 856 1.808945 CATCAGCCTTCGTTGCTTCTT 59.191 47.619 0.00 0.00 36.81 2.52
846 857 1.512926 TCAGCCTTCGTTGCTTCTTC 58.487 50.000 0.00 0.00 36.81 2.87
848 859 1.196354 CAGCCTTCGTTGCTTCTTCAG 59.804 52.381 0.00 0.00 36.81 3.02
849 860 0.519077 GCCTTCGTTGCTTCTTCAGG 59.481 55.000 0.00 0.00 0.00 3.86
850 861 1.884235 CCTTCGTTGCTTCTTCAGGT 58.116 50.000 0.00 0.00 0.00 4.00
853 864 0.319555 TCGTTGCTTCTTCAGGTCCG 60.320 55.000 0.00 0.00 0.00 4.79
854 865 0.319555 CGTTGCTTCTTCAGGTCCGA 60.320 55.000 0.00 0.00 0.00 4.55
855 866 1.872237 CGTTGCTTCTTCAGGTCCGAA 60.872 52.381 0.00 0.00 0.00 4.30
856 867 1.801178 GTTGCTTCTTCAGGTCCGAAG 59.199 52.381 13.94 13.94 43.17 3.79
857 868 1.048601 TGCTTCTTCAGGTCCGAAGT 58.951 50.000 17.45 0.00 42.53 3.01
858 869 2.244695 TGCTTCTTCAGGTCCGAAGTA 58.755 47.619 17.45 10.82 42.53 2.24
859 870 2.029290 TGCTTCTTCAGGTCCGAAGTAC 60.029 50.000 17.45 11.46 42.53 2.73
860 871 2.029290 GCTTCTTCAGGTCCGAAGTACA 60.029 50.000 17.45 7.45 42.53 2.90
861 872 3.554337 GCTTCTTCAGGTCCGAAGTACAA 60.554 47.826 17.45 8.52 42.53 2.41
862 873 4.628074 CTTCTTCAGGTCCGAAGTACAAA 58.372 43.478 17.45 8.28 42.53 2.83
863 874 4.884668 TCTTCAGGTCCGAAGTACAAAT 57.115 40.909 17.45 0.00 42.53 2.32
864 875 5.223449 TCTTCAGGTCCGAAGTACAAATT 57.777 39.130 17.45 0.00 42.53 1.82
865 876 5.617252 TCTTCAGGTCCGAAGTACAAATTT 58.383 37.500 17.45 0.00 42.53 1.82
866 877 6.059484 TCTTCAGGTCCGAAGTACAAATTTT 58.941 36.000 17.45 0.00 42.53 1.82
886 897 1.118838 TTTCAGTGCTTTGGTTGGGG 58.881 50.000 0.00 0.00 0.00 4.96
887 898 0.032615 TTCAGTGCTTTGGTTGGGGT 60.033 50.000 0.00 0.00 0.00 4.95
888 899 0.754957 TCAGTGCTTTGGTTGGGGTG 60.755 55.000 0.00 0.00 0.00 4.61
889 900 2.133641 AGTGCTTTGGTTGGGGTGC 61.134 57.895 0.00 0.00 0.00 5.01
890 901 3.222855 TGCTTTGGTTGGGGTGCG 61.223 61.111 0.00 0.00 0.00 5.34
892 903 3.989787 CTTTGGTTGGGGTGCGCC 61.990 66.667 8.12 8.12 0.00 6.53
918 929 0.739813 GGTAGTAGTGCAACGCCTGG 60.740 60.000 0.00 0.00 45.86 4.45
966 977 0.120377 TATTGTGGTGGACCCTCCCT 59.880 55.000 4.84 0.00 35.03 4.20
1003 1014 2.708216 ATATCGTTGTGGGCACATGA 57.292 45.000 0.00 0.00 41.52 3.07
1083 1094 2.633488 GCCGAGAAAGGTATGCTTCTT 58.367 47.619 0.00 0.00 32.01 2.52
1085 1096 3.198872 CCGAGAAAGGTATGCTTCTTCC 58.801 50.000 0.00 0.00 32.01 3.46
1086 1097 3.118592 CCGAGAAAGGTATGCTTCTTCCT 60.119 47.826 0.00 0.00 32.01 3.36
1116 1127 2.288640 GGGTCTGGTTATATAGCGCGTT 60.289 50.000 8.43 3.54 0.00 4.84
1119 1130 4.084693 GGTCTGGTTATATAGCGCGTTTTC 60.085 45.833 8.43 0.00 0.00 2.29
1130 1141 4.695560 CGTTTTCGCCTCCTTCCT 57.304 55.556 0.00 0.00 36.22 3.36
1133 1144 1.197036 CGTTTTCGCCTCCTTCCTTTC 59.803 52.381 0.00 0.00 36.22 2.62
1142 1153 0.836400 TCCTTCCTTTCTGGCTCCGT 60.836 55.000 0.00 0.00 35.26 4.69
1163 1174 2.637872 TGAGGTGGGACTAAACAAGAGG 59.362 50.000 0.00 0.00 0.00 3.69
1165 1176 1.703513 GGTGGGACTAAACAAGAGGGT 59.296 52.381 0.00 0.00 0.00 4.34
1203 1215 2.349275 TCTGTGTTCCGTTCGTTGTTTC 59.651 45.455 0.00 0.00 0.00 2.78
1205 1217 1.324134 GTGTTCCGTTCGTTGTTTCGA 59.676 47.619 0.00 0.00 38.08 3.71
1209 1221 0.782384 CCGTTCGTTGTTTCGAGAGG 59.218 55.000 0.00 0.00 40.86 3.69
1371 1383 6.406961 CCTGGAACTTTAAAGGAAAAGCTGTT 60.407 38.462 19.14 0.00 39.59 3.16
1408 1430 1.002069 TGGATTCACCAAGCCCTCAT 58.998 50.000 0.00 0.00 46.75 2.90
1455 1477 2.187958 TGGGTTCAGATCCACGATCTT 58.812 47.619 1.34 0.00 45.86 2.40
1471 1493 0.890683 TCTTCCGGACGGTTTCTACC 59.109 55.000 1.83 0.00 41.33 3.18
1497 1519 1.055849 TCAAAGCCCTGTCAGCTACA 58.944 50.000 0.00 0.00 40.49 2.74
1509 1531 4.460263 TGTCAGCTACAGTTGGTGAATTT 58.540 39.130 16.88 0.00 42.42 1.82
1560 1582 1.531578 GAGGGAAACTTTGCTCGTGTC 59.468 52.381 0.00 0.00 0.00 3.67
1633 1655 4.145052 GGTCAAGAGGAAGGAAACAATGT 58.855 43.478 0.00 0.00 0.00 2.71
1725 1747 1.197721 CTGTTCAAGGAATGTGGCGAC 59.802 52.381 0.00 0.00 0.00 5.19
1893 1915 1.138266 CAATACGGTTCCCCTCACGAT 59.862 52.381 0.00 0.00 0.00 3.73
1894 1916 0.750850 ATACGGTTCCCCTCACGATG 59.249 55.000 0.00 0.00 0.00 3.84
2004 2026 0.179234 GAGGCCAGAAAGGAGTAGCC 59.821 60.000 5.01 0.00 41.22 3.93
2013 2035 0.608640 AAGGAGTAGCCACACCGAAG 59.391 55.000 0.00 0.00 40.12 3.79
2060 2082 1.112113 GCTCCGGAGATACCTGTCAA 58.888 55.000 35.69 0.00 36.31 3.18
2066 2088 3.071602 CCGGAGATACCTGTCAATCCATT 59.928 47.826 0.00 0.00 36.31 3.16
2091 2113 5.536161 TGCTAAGCAAGAACCAAAGAGAAAT 59.464 36.000 0.00 0.00 34.76 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.493176 GGTGCAGTTTTGGCTTCTTTGAT 60.493 43.478 0.00 0.00 0.00 2.57
1 2 2.159114 GGTGCAGTTTTGGCTTCTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
2 3 2.204237 GGTGCAGTTTTGGCTTCTTTG 58.796 47.619 0.00 0.00 0.00 2.77
3 4 1.830477 TGGTGCAGTTTTGGCTTCTTT 59.170 42.857 0.00 0.00 0.00 2.52
4 5 1.136891 GTGGTGCAGTTTTGGCTTCTT 59.863 47.619 0.00 0.00 0.00 2.52
5 6 0.746659 GTGGTGCAGTTTTGGCTTCT 59.253 50.000 0.00 0.00 0.00 2.85
6 7 0.459489 TGTGGTGCAGTTTTGGCTTC 59.541 50.000 0.00 0.00 0.00 3.86
7 8 0.175531 GTGTGGTGCAGTTTTGGCTT 59.824 50.000 0.00 0.00 0.00 4.35
8 9 1.815866 GTGTGGTGCAGTTTTGGCT 59.184 52.632 0.00 0.00 0.00 4.75
9 10 1.588667 CGTGTGGTGCAGTTTTGGC 60.589 57.895 0.00 0.00 0.00 4.52
10 11 1.065600 CCGTGTGGTGCAGTTTTGG 59.934 57.895 0.00 0.00 0.00 3.28
11 12 1.065600 CCCGTGTGGTGCAGTTTTG 59.934 57.895 0.00 0.00 0.00 2.44
12 13 3.520402 CCCGTGTGGTGCAGTTTT 58.480 55.556 0.00 0.00 0.00 2.43
21 22 2.656069 CCTACCCAGACCCGTGTGG 61.656 68.421 4.05 4.05 43.07 4.17
22 23 0.612732 TACCTACCCAGACCCGTGTG 60.613 60.000 0.00 0.00 0.00 3.82
23 24 0.114954 TTACCTACCCAGACCCGTGT 59.885 55.000 0.00 0.00 0.00 4.49
24 25 1.492764 ATTACCTACCCAGACCCGTG 58.507 55.000 0.00 0.00 0.00 4.94
25 26 3.236896 CATATTACCTACCCAGACCCGT 58.763 50.000 0.00 0.00 0.00 5.28
26 27 2.028385 GCATATTACCTACCCAGACCCG 60.028 54.545 0.00 0.00 0.00 5.28
27 28 2.976882 TGCATATTACCTACCCAGACCC 59.023 50.000 0.00 0.00 0.00 4.46
28 29 3.008049 CCTGCATATTACCTACCCAGACC 59.992 52.174 0.00 0.00 0.00 3.85
29 30 3.557264 GCCTGCATATTACCTACCCAGAC 60.557 52.174 0.00 0.00 0.00 3.51
30 31 2.637872 GCCTGCATATTACCTACCCAGA 59.362 50.000 0.00 0.00 0.00 3.86
31 32 2.290323 GGCCTGCATATTACCTACCCAG 60.290 54.545 0.00 0.00 0.00 4.45
32 33 1.702957 GGCCTGCATATTACCTACCCA 59.297 52.381 0.00 0.00 0.00 4.51
33 34 1.702957 TGGCCTGCATATTACCTACCC 59.297 52.381 3.32 0.00 0.00 3.69
34 35 2.552373 GGTGGCCTGCATATTACCTACC 60.552 54.545 3.32 0.00 0.00 3.18
35 36 2.105821 TGGTGGCCTGCATATTACCTAC 59.894 50.000 3.32 0.00 0.00 3.18
36 37 2.413601 TGGTGGCCTGCATATTACCTA 58.586 47.619 3.32 0.00 0.00 3.08
37 38 1.221635 TGGTGGCCTGCATATTACCT 58.778 50.000 3.32 0.00 0.00 3.08
38 39 1.681264 GTTGGTGGCCTGCATATTACC 59.319 52.381 3.32 0.00 0.00 2.85
39 40 1.681264 GGTTGGTGGCCTGCATATTAC 59.319 52.381 3.32 0.00 0.00 1.89
40 41 1.748939 CGGTTGGTGGCCTGCATATTA 60.749 52.381 3.32 0.00 0.00 0.98
41 42 1.037030 CGGTTGGTGGCCTGCATATT 61.037 55.000 3.32 0.00 0.00 1.28
42 43 1.453745 CGGTTGGTGGCCTGCATAT 60.454 57.895 3.32 0.00 0.00 1.78
43 44 2.045438 CGGTTGGTGGCCTGCATA 60.045 61.111 3.32 0.00 0.00 3.14
52 53 3.490759 CTAGCTGCGCGGTTGGTG 61.491 66.667 19.23 3.20 0.00 4.17
62 63 0.801251 CACACAGGAAAGCTAGCTGC 59.199 55.000 20.16 13.56 43.29 5.25
63 64 2.175878 ACACACAGGAAAGCTAGCTG 57.824 50.000 20.16 8.81 0.00 4.24
64 65 2.028020 GGTACACACAGGAAAGCTAGCT 60.028 50.000 12.68 12.68 0.00 3.32
65 66 2.028020 AGGTACACACAGGAAAGCTAGC 60.028 50.000 6.62 6.62 0.00 3.42
66 67 3.963428 AGGTACACACAGGAAAGCTAG 57.037 47.619 0.00 0.00 0.00 3.42
67 68 3.901844 AGAAGGTACACACAGGAAAGCTA 59.098 43.478 0.00 0.00 0.00 3.32
68 69 2.706190 AGAAGGTACACACAGGAAAGCT 59.294 45.455 0.00 0.00 0.00 3.74
69 70 3.067833 GAGAAGGTACACACAGGAAAGC 58.932 50.000 0.00 0.00 0.00 3.51
70 71 4.310769 CAGAGAAGGTACACACAGGAAAG 58.689 47.826 0.00 0.00 0.00 2.62
71 72 3.494398 GCAGAGAAGGTACACACAGGAAA 60.494 47.826 0.00 0.00 0.00 3.13
72 73 2.037251 GCAGAGAAGGTACACACAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
73 74 1.618837 GCAGAGAAGGTACACACAGGA 59.381 52.381 0.00 0.00 0.00 3.86
74 75 1.620819 AGCAGAGAAGGTACACACAGG 59.379 52.381 0.00 0.00 0.00 4.00
75 76 4.521130 TTAGCAGAGAAGGTACACACAG 57.479 45.455 0.00 0.00 0.00 3.66
76 77 4.820897 CATTAGCAGAGAAGGTACACACA 58.179 43.478 0.00 0.00 0.00 3.72
77 78 3.619038 GCATTAGCAGAGAAGGTACACAC 59.381 47.826 0.00 0.00 41.58 3.82
78 79 3.861840 GCATTAGCAGAGAAGGTACACA 58.138 45.455 0.00 0.00 41.58 3.72
95 96 9.719355 TCGTTTCATACATAACCTATATGCATT 57.281 29.630 3.54 0.00 0.00 3.56
96 97 9.719355 TTCGTTTCATACATAACCTATATGCAT 57.281 29.630 3.79 3.79 0.00 3.96
97 98 9.203421 CTTCGTTTCATACATAACCTATATGCA 57.797 33.333 0.00 0.00 0.00 3.96
98 99 8.656849 CCTTCGTTTCATACATAACCTATATGC 58.343 37.037 0.00 0.00 0.00 3.14
99 100 9.151471 CCCTTCGTTTCATACATAACCTATATG 57.849 37.037 0.00 0.00 0.00 1.78
100 101 8.319146 CCCCTTCGTTTCATACATAACCTATAT 58.681 37.037 0.00 0.00 0.00 0.86
101 102 7.673180 CCCCTTCGTTTCATACATAACCTATA 58.327 38.462 0.00 0.00 0.00 1.31
102 103 6.531021 CCCCTTCGTTTCATACATAACCTAT 58.469 40.000 0.00 0.00 0.00 2.57
103 104 5.685599 GCCCCTTCGTTTCATACATAACCTA 60.686 44.000 0.00 0.00 0.00 3.08
104 105 4.777463 CCCCTTCGTTTCATACATAACCT 58.223 43.478 0.00 0.00 0.00 3.50
105 106 3.314357 GCCCCTTCGTTTCATACATAACC 59.686 47.826 0.00 0.00 0.00 2.85
106 107 3.001939 CGCCCCTTCGTTTCATACATAAC 59.998 47.826 0.00 0.00 0.00 1.89
107 108 3.199677 CGCCCCTTCGTTTCATACATAA 58.800 45.455 0.00 0.00 0.00 1.90
108 109 2.168936 ACGCCCCTTCGTTTCATACATA 59.831 45.455 0.00 0.00 40.07 2.29
109 110 1.065709 ACGCCCCTTCGTTTCATACAT 60.066 47.619 0.00 0.00 40.07 2.29
110 111 0.322322 ACGCCCCTTCGTTTCATACA 59.678 50.000 0.00 0.00 40.07 2.29
111 112 0.725117 CACGCCCCTTCGTTTCATAC 59.275 55.000 0.00 0.00 41.21 2.39
112 113 0.322322 ACACGCCCCTTCGTTTCATA 59.678 50.000 0.00 0.00 41.21 2.15
113 114 0.536460 AACACGCCCCTTCGTTTCAT 60.536 50.000 0.00 0.00 41.21 2.57
114 115 0.748729 AAACACGCCCCTTCGTTTCA 60.749 50.000 0.00 0.00 41.21 2.69
115 116 0.317519 CAAACACGCCCCTTCGTTTC 60.318 55.000 0.00 0.00 41.21 2.78
116 117 1.730451 CCAAACACGCCCCTTCGTTT 61.730 55.000 0.00 0.00 41.21 3.60
117 118 2.190841 CCAAACACGCCCCTTCGTT 61.191 57.895 0.00 0.00 41.21 3.85
118 119 2.593436 CCAAACACGCCCCTTCGT 60.593 61.111 0.00 0.00 44.35 3.85
119 120 1.730451 AAACCAAACACGCCCCTTCG 61.730 55.000 0.00 0.00 0.00 3.79
120 121 0.249280 CAAACCAAACACGCCCCTTC 60.249 55.000 0.00 0.00 0.00 3.46
121 122 0.973496 ACAAACCAAACACGCCCCTT 60.973 50.000 0.00 0.00 0.00 3.95
122 123 1.380650 ACAAACCAAACACGCCCCT 60.381 52.632 0.00 0.00 0.00 4.79
123 124 1.227118 CACAAACCAAACACGCCCC 60.227 57.895 0.00 0.00 0.00 5.80
124 125 0.526739 GTCACAAACCAAACACGCCC 60.527 55.000 0.00 0.00 0.00 6.13
125 126 0.454196 AGTCACAAACCAAACACGCC 59.546 50.000 0.00 0.00 0.00 5.68
126 127 3.296628 CATAGTCACAAACCAAACACGC 58.703 45.455 0.00 0.00 0.00 5.34
127 128 3.242903 TGCATAGTCACAAACCAAACACG 60.243 43.478 0.00 0.00 0.00 4.49
128 129 4.300189 TGCATAGTCACAAACCAAACAC 57.700 40.909 0.00 0.00 0.00 3.32
129 130 4.795635 GCATGCATAGTCACAAACCAAACA 60.796 41.667 14.21 0.00 0.00 2.83
130 131 3.674753 GCATGCATAGTCACAAACCAAAC 59.325 43.478 14.21 0.00 0.00 2.93
131 132 3.305950 GGCATGCATAGTCACAAACCAAA 60.306 43.478 21.36 0.00 0.00 3.28
132 133 2.230992 GGCATGCATAGTCACAAACCAA 59.769 45.455 21.36 0.00 0.00 3.67
133 134 1.818060 GGCATGCATAGTCACAAACCA 59.182 47.619 21.36 0.00 0.00 3.67
134 135 1.818060 TGGCATGCATAGTCACAAACC 59.182 47.619 21.36 0.00 0.00 3.27
135 136 2.228582 TGTGGCATGCATAGTCACAAAC 59.771 45.455 24.56 7.65 35.72 2.93
136 137 2.488937 CTGTGGCATGCATAGTCACAAA 59.511 45.455 25.75 12.58 37.80 2.83
137 138 2.086094 CTGTGGCATGCATAGTCACAA 58.914 47.619 25.75 15.67 37.80 3.33
138 139 1.741528 CTGTGGCATGCATAGTCACA 58.258 50.000 24.86 24.86 36.94 3.58
139 140 0.379669 GCTGTGGCATGCATAGTCAC 59.620 55.000 21.36 20.16 38.54 3.67
140 141 0.253894 AGCTGTGGCATGCATAGTCA 59.746 50.000 21.36 4.57 41.70 3.41
141 142 1.065102 CAAGCTGTGGCATGCATAGTC 59.935 52.381 21.36 9.93 41.70 2.59
142 143 1.100510 CAAGCTGTGGCATGCATAGT 58.899 50.000 21.36 2.78 41.70 2.12
143 144 3.938653 CAAGCTGTGGCATGCATAG 57.061 52.632 21.36 14.64 41.70 2.23
157 158 1.818642 CATAGGGAGCTATGGCAAGC 58.181 55.000 3.10 11.97 43.11 4.01
158 159 1.818642 GCATAGGGAGCTATGGCAAG 58.181 55.000 3.10 0.00 41.70 4.01
162 163 3.584848 AGTTTAGGCATAGGGAGCTATGG 59.415 47.826 0.00 0.00 37.67 2.74
163 164 4.899352 AGTTTAGGCATAGGGAGCTATG 57.101 45.455 0.00 0.00 39.58 2.23
164 165 5.046231 GCTAAGTTTAGGCATAGGGAGCTAT 60.046 44.000 0.00 0.00 0.00 2.97
165 166 4.283722 GCTAAGTTTAGGCATAGGGAGCTA 59.716 45.833 0.00 0.00 0.00 3.32
166 167 3.071747 GCTAAGTTTAGGCATAGGGAGCT 59.928 47.826 0.00 0.00 0.00 4.09
167 168 3.403968 GCTAAGTTTAGGCATAGGGAGC 58.596 50.000 1.44 0.00 0.00 4.70
177 178 4.327680 AGCAAACAGAGGCTAAGTTTAGG 58.672 43.478 14.15 6.79 38.90 2.69
178 179 5.948992 AAGCAAACAGAGGCTAAGTTTAG 57.051 39.130 14.15 10.74 40.01 1.85
179 180 7.574967 GCATAAAGCAAACAGAGGCTAAGTTTA 60.575 37.037 14.15 2.54 44.79 2.01
180 181 6.681777 CATAAAGCAAACAGAGGCTAAGTTT 58.318 36.000 10.07 10.07 40.01 2.66
181 182 5.335976 GCATAAAGCAAACAGAGGCTAAGTT 60.336 40.000 0.00 0.00 44.79 2.66
182 183 4.156739 GCATAAAGCAAACAGAGGCTAAGT 59.843 41.667 0.00 0.00 44.79 2.24
183 184 4.666237 GCATAAAGCAAACAGAGGCTAAG 58.334 43.478 0.00 0.00 44.79 2.18
184 185 4.701956 GCATAAAGCAAACAGAGGCTAA 57.298 40.909 0.00 0.00 44.79 3.09
197 198 1.669795 GCCACAACACCTGCATAAAGC 60.670 52.381 0.00 0.00 45.96 3.51
198 199 1.401409 CGCCACAACACCTGCATAAAG 60.401 52.381 0.00 0.00 0.00 1.85
199 200 0.595588 CGCCACAACACCTGCATAAA 59.404 50.000 0.00 0.00 0.00 1.40
200 201 0.536233 ACGCCACAACACCTGCATAA 60.536 50.000 0.00 0.00 0.00 1.90
201 202 1.072332 ACGCCACAACACCTGCATA 59.928 52.632 0.00 0.00 0.00 3.14
202 203 2.203337 ACGCCACAACACCTGCAT 60.203 55.556 0.00 0.00 0.00 3.96
203 204 3.208383 CACGCCACAACACCTGCA 61.208 61.111 0.00 0.00 0.00 4.41
204 205 4.629115 GCACGCCACAACACCTGC 62.629 66.667 0.00 0.00 0.00 4.85
205 206 3.964875 GGCACGCCACAACACCTG 61.965 66.667 2.36 0.00 35.81 4.00
218 219 2.796483 TATGGTGAGTGGTGCGGCAC 62.796 60.000 24.43 24.43 0.00 5.01
219 220 2.520465 CTATGGTGAGTGGTGCGGCA 62.520 60.000 0.00 0.00 0.00 5.69
220 221 1.815421 CTATGGTGAGTGGTGCGGC 60.815 63.158 0.00 0.00 0.00 6.53
221 222 1.153369 CCTATGGTGAGTGGTGCGG 60.153 63.158 0.00 0.00 0.00 5.69
222 223 0.036388 AACCTATGGTGAGTGGTGCG 60.036 55.000 0.00 0.00 35.34 5.34
223 224 1.453155 CAACCTATGGTGAGTGGTGC 58.547 55.000 0.00 0.00 35.34 5.01
224 225 1.003580 AGCAACCTATGGTGAGTGGTG 59.996 52.381 0.00 0.00 38.62 4.17
225 226 1.362224 AGCAACCTATGGTGAGTGGT 58.638 50.000 0.00 0.00 38.62 4.16
226 227 2.501723 ACTAGCAACCTATGGTGAGTGG 59.498 50.000 0.00 0.00 40.70 4.00
227 228 3.895232 ACTAGCAACCTATGGTGAGTG 57.105 47.619 0.00 0.00 40.70 3.51
228 229 3.838317 TGAACTAGCAACCTATGGTGAGT 59.162 43.478 0.00 0.00 40.70 3.41
229 230 4.471904 TGAACTAGCAACCTATGGTGAG 57.528 45.455 0.00 0.00 40.70 3.51
230 231 5.435686 AATGAACTAGCAACCTATGGTGA 57.564 39.130 0.00 0.00 40.70 4.02
231 232 6.515272 AAAATGAACTAGCAACCTATGGTG 57.485 37.500 0.00 0.00 40.70 4.17
232 233 6.719370 TGAAAAATGAACTAGCAACCTATGGT 59.281 34.615 0.00 0.00 43.54 3.55
233 234 7.029563 GTGAAAAATGAACTAGCAACCTATGG 58.970 38.462 0.00 0.00 0.00 2.74
234 235 6.742718 CGTGAAAAATGAACTAGCAACCTATG 59.257 38.462 0.00 0.00 0.00 2.23
235 236 6.622896 GCGTGAAAAATGAACTAGCAACCTAT 60.623 38.462 0.00 0.00 0.00 2.57
236 237 5.334569 GCGTGAAAAATGAACTAGCAACCTA 60.335 40.000 0.00 0.00 0.00 3.08
237 238 4.556699 GCGTGAAAAATGAACTAGCAACCT 60.557 41.667 0.00 0.00 0.00 3.50
238 239 3.668656 GCGTGAAAAATGAACTAGCAACC 59.331 43.478 0.00 0.00 0.00 3.77
239 240 3.668656 GGCGTGAAAAATGAACTAGCAAC 59.331 43.478 0.00 0.00 0.00 4.17
240 241 3.316588 TGGCGTGAAAAATGAACTAGCAA 59.683 39.130 0.00 0.00 0.00 3.91
241 242 2.881513 TGGCGTGAAAAATGAACTAGCA 59.118 40.909 0.00 0.00 0.00 3.49
242 243 3.234386 GTGGCGTGAAAAATGAACTAGC 58.766 45.455 0.00 0.00 0.00 3.42
243 244 4.481930 TGTGGCGTGAAAAATGAACTAG 57.518 40.909 0.00 0.00 0.00 2.57
244 245 4.336993 AGTTGTGGCGTGAAAAATGAACTA 59.663 37.500 0.00 0.00 0.00 2.24
245 246 3.130340 AGTTGTGGCGTGAAAAATGAACT 59.870 39.130 0.00 0.00 0.00 3.01
246 247 3.443976 AGTTGTGGCGTGAAAAATGAAC 58.556 40.909 0.00 0.00 0.00 3.18
247 248 3.701241 GAGTTGTGGCGTGAAAAATGAA 58.299 40.909 0.00 0.00 0.00 2.57
248 249 2.286713 CGAGTTGTGGCGTGAAAAATGA 60.287 45.455 0.00 0.00 0.00 2.57
249 250 2.043411 CGAGTTGTGGCGTGAAAAATG 58.957 47.619 0.00 0.00 0.00 2.32
250 251 1.673920 ACGAGTTGTGGCGTGAAAAAT 59.326 42.857 0.00 0.00 39.56 1.82
251 252 1.062880 GACGAGTTGTGGCGTGAAAAA 59.937 47.619 0.00 0.00 41.34 1.94
252 253 0.653636 GACGAGTTGTGGCGTGAAAA 59.346 50.000 0.00 0.00 41.34 2.29
253 254 1.484227 CGACGAGTTGTGGCGTGAAA 61.484 55.000 0.00 0.00 41.34 2.69
254 255 1.947146 CGACGAGTTGTGGCGTGAA 60.947 57.895 0.00 0.00 41.34 3.18
255 256 2.339100 TTCGACGAGTTGTGGCGTGA 62.339 55.000 0.00 0.00 41.34 4.35
256 257 1.484227 TTTCGACGAGTTGTGGCGTG 61.484 55.000 0.00 0.00 41.34 5.34
257 258 1.213094 CTTTCGACGAGTTGTGGCGT 61.213 55.000 0.00 0.00 44.33 5.68
258 259 1.213094 ACTTTCGACGAGTTGTGGCG 61.213 55.000 0.00 0.00 0.00 5.69
259 260 0.232303 CACTTTCGACGAGTTGTGGC 59.768 55.000 14.79 0.00 0.00 5.01
260 261 1.257936 CACACTTTCGACGAGTTGTGG 59.742 52.381 21.79 12.45 0.00 4.17
261 262 1.257936 CCACACTTTCGACGAGTTGTG 59.742 52.381 20.32 20.32 0.00 3.33
262 263 1.567504 CCACACTTTCGACGAGTTGT 58.432 50.000 0.00 0.00 0.00 3.32
263 264 0.232303 GCCACACTTTCGACGAGTTG 59.768 55.000 0.00 0.00 0.00 3.16
264 265 1.213094 CGCCACACTTTCGACGAGTT 61.213 55.000 0.00 0.00 0.00 3.01
265 266 1.660575 CGCCACACTTTCGACGAGT 60.661 57.895 0.00 0.00 0.00 4.18
266 267 3.000080 GCGCCACACTTTCGACGAG 62.000 63.158 0.00 0.00 0.00 4.18
267 268 3.033764 GCGCCACACTTTCGACGA 61.034 61.111 0.00 0.00 0.00 4.20
268 269 3.000080 GAGCGCCACACTTTCGACG 62.000 63.158 2.29 0.00 0.00 5.12
269 270 2.853914 GAGCGCCACACTTTCGAC 59.146 61.111 2.29 0.00 0.00 4.20
270 271 2.733218 CGAGCGCCACACTTTCGA 60.733 61.111 2.29 0.00 33.38 3.71
271 272 2.101209 AAACGAGCGCCACACTTTCG 62.101 55.000 2.29 7.72 37.31 3.46
272 273 0.384353 GAAACGAGCGCCACACTTTC 60.384 55.000 2.29 5.34 0.00 2.62
273 274 1.647084 GAAACGAGCGCCACACTTT 59.353 52.632 2.29 0.00 0.00 2.66
274 275 2.594962 CGAAACGAGCGCCACACTT 61.595 57.895 2.29 0.00 0.00 3.16
275 276 3.036084 CGAAACGAGCGCCACACT 61.036 61.111 2.29 0.00 0.00 3.55
276 277 2.743871 GAACGAAACGAGCGCCACAC 62.744 60.000 2.29 0.00 0.00 3.82
277 278 2.586635 AACGAAACGAGCGCCACA 60.587 55.556 2.29 0.00 0.00 4.17
278 279 2.170273 GAACGAAACGAGCGCCAC 59.830 61.111 2.29 0.00 0.00 5.01
279 280 3.399770 CGAACGAAACGAGCGCCA 61.400 61.111 2.29 0.00 0.00 5.69
280 281 4.771812 GCGAACGAAACGAGCGCC 62.772 66.667 2.29 0.00 42.66 6.53
281 282 4.771812 GGCGAACGAAACGAGCGC 62.772 66.667 19.29 19.29 45.39 5.92
317 318 3.853330 CACGCCACGCCGAAGATG 61.853 66.667 0.00 0.00 0.00 2.90
318 319 3.876589 AACACGCCACGCCGAAGAT 62.877 57.895 0.00 0.00 0.00 2.40
319 320 4.595538 AACACGCCACGCCGAAGA 62.596 61.111 0.00 0.00 0.00 2.87
320 321 4.072088 GAACACGCCACGCCGAAG 62.072 66.667 0.00 0.00 0.00 3.79
321 322 4.595538 AGAACACGCCACGCCGAA 62.596 61.111 0.00 0.00 0.00 4.30
325 326 4.012895 CACCAGAACACGCCACGC 62.013 66.667 0.00 0.00 0.00 5.34
326 327 0.389296 TATCACCAGAACACGCCACG 60.389 55.000 0.00 0.00 0.00 4.94
327 328 1.803334 TTATCACCAGAACACGCCAC 58.197 50.000 0.00 0.00 0.00 5.01
328 329 2.552599 TTTATCACCAGAACACGCCA 57.447 45.000 0.00 0.00 0.00 5.69
329 330 3.006940 TGATTTATCACCAGAACACGCC 58.993 45.455 0.00 0.00 0.00 5.68
330 331 4.678509 TTGATTTATCACCAGAACACGC 57.321 40.909 0.00 0.00 36.36 5.34
331 332 5.851177 GTGTTTGATTTATCACCAGAACACG 59.149 40.000 16.27 0.00 41.20 4.49
332 333 5.851177 CGTGTTTGATTTATCACCAGAACAC 59.149 40.000 18.99 18.99 43.92 3.32
333 334 5.561919 GCGTGTTTGATTTATCACCAGAACA 60.562 40.000 4.43 4.43 36.36 3.18
334 335 4.851558 GCGTGTTTGATTTATCACCAGAAC 59.148 41.667 0.00 0.00 36.36 3.01
335 336 4.083003 GGCGTGTTTGATTTATCACCAGAA 60.083 41.667 0.00 0.00 36.36 3.02
336 337 3.438781 GGCGTGTTTGATTTATCACCAGA 59.561 43.478 0.00 0.00 36.36 3.86
337 338 3.427503 GGGCGTGTTTGATTTATCACCAG 60.428 47.826 0.00 0.00 36.36 4.00
338 339 2.490115 GGGCGTGTTTGATTTATCACCA 59.510 45.455 0.00 0.00 36.36 4.17
339 340 2.490115 TGGGCGTGTTTGATTTATCACC 59.510 45.455 0.00 0.00 36.36 4.02
340 341 3.840890 TGGGCGTGTTTGATTTATCAC 57.159 42.857 0.00 0.00 36.36 3.06
341 342 4.855715 TTTGGGCGTGTTTGATTTATCA 57.144 36.364 0.00 0.00 34.44 2.15
342 343 5.637387 ACATTTTGGGCGTGTTTGATTTATC 59.363 36.000 0.00 0.00 0.00 1.75
343 344 5.407995 CACATTTTGGGCGTGTTTGATTTAT 59.592 36.000 0.00 0.00 0.00 1.40
344 345 4.747108 CACATTTTGGGCGTGTTTGATTTA 59.253 37.500 0.00 0.00 0.00 1.40
345 346 3.559242 CACATTTTGGGCGTGTTTGATTT 59.441 39.130 0.00 0.00 0.00 2.17
346 347 3.129871 CACATTTTGGGCGTGTTTGATT 58.870 40.909 0.00 0.00 0.00 2.57
347 348 2.102252 ACACATTTTGGGCGTGTTTGAT 59.898 40.909 0.00 0.00 40.91 2.57
348 349 1.478510 ACACATTTTGGGCGTGTTTGA 59.521 42.857 0.00 0.00 40.91 2.69
349 350 1.592081 CACACATTTTGGGCGTGTTTG 59.408 47.619 0.00 0.00 41.79 2.93
350 351 1.478510 TCACACATTTTGGGCGTGTTT 59.521 42.857 0.00 0.00 41.79 2.83
351 352 1.107114 TCACACATTTTGGGCGTGTT 58.893 45.000 0.00 0.00 41.79 3.32
352 353 0.383949 GTCACACATTTTGGGCGTGT 59.616 50.000 0.00 0.00 44.45 4.49
353 354 0.667993 AGTCACACATTTTGGGCGTG 59.332 50.000 0.00 0.00 36.70 5.34
354 355 0.667993 CAGTCACACATTTTGGGCGT 59.332 50.000 0.00 0.00 0.00 5.68
355 356 0.039256 CCAGTCACACATTTTGGGCG 60.039 55.000 0.00 0.00 0.00 6.13
356 357 1.270550 CTCCAGTCACACATTTTGGGC 59.729 52.381 0.00 0.00 0.00 5.36
357 358 1.888512 CCTCCAGTCACACATTTTGGG 59.111 52.381 0.00 0.00 0.00 4.12
358 359 1.270550 GCCTCCAGTCACACATTTTGG 59.729 52.381 0.00 0.00 0.00 3.28
359 360 1.270550 GGCCTCCAGTCACACATTTTG 59.729 52.381 0.00 0.00 0.00 2.44
360 361 1.133513 TGGCCTCCAGTCACACATTTT 60.134 47.619 3.32 0.00 0.00 1.82
396 397 4.899457 TCTAACTGTTTGGGACTTCTCTGA 59.101 41.667 0.00 0.00 0.00 3.27
400 401 5.632034 AACTCTAACTGTTTGGGACTTCT 57.368 39.130 8.82 0.00 0.00 2.85
417 418 8.818860 TCTTCTGTAGTAGAACTCTCTAACTCT 58.181 37.037 0.00 0.00 40.43 3.24
428 429 6.398918 TGGATTGCTTCTTCTGTAGTAGAAC 58.601 40.000 0.00 0.00 40.43 3.01
430 431 6.381133 TGATGGATTGCTTCTTCTGTAGTAGA 59.619 38.462 0.00 0.00 0.00 2.59
431 432 6.577103 TGATGGATTGCTTCTTCTGTAGTAG 58.423 40.000 0.00 0.00 0.00 2.57
434 435 6.596888 TCTTTGATGGATTGCTTCTTCTGTAG 59.403 38.462 0.00 0.00 0.00 2.74
437 438 5.392811 GGTCTTTGATGGATTGCTTCTTCTG 60.393 44.000 0.00 0.00 0.00 3.02
440 441 3.766051 GGGTCTTTGATGGATTGCTTCTT 59.234 43.478 0.00 0.00 0.00 2.52
462 463 2.410392 TGGTTTCGTTCATGATTCGACG 59.590 45.455 18.49 14.93 36.89 5.12
523 534 7.230712 ACCGGTCTCTTTAAAACTGATGAAAAT 59.769 33.333 0.00 0.00 0.00 1.82
563 574 8.248117 GCTATGAAAAGCAAAAGTTTCATCAT 57.752 30.769 13.31 5.05 46.52 2.45
580 591 6.000219 AGAGCTTGTTTCTTCTGCTATGAAA 59.000 36.000 0.00 0.00 33.83 2.69
603 614 7.819415 TGTTATACTTCAGGTCTGATGAAACAG 59.181 37.037 17.18 7.07 39.64 3.16
613 624 6.670027 AGAGGTTGATGTTATACTTCAGGTCT 59.330 38.462 0.00 0.00 34.41 3.85
616 627 7.331026 TGAAGAGGTTGATGTTATACTTCAGG 58.669 38.462 0.00 0.00 37.92 3.86
617 628 8.417780 CTGAAGAGGTTGATGTTATACTTCAG 57.582 38.462 15.53 15.53 46.69 3.02
619 630 6.258947 GCCTGAAGAGGTTGATGTTATACTTC 59.741 42.308 0.00 0.00 42.15 3.01
621 632 5.396884 GGCCTGAAGAGGTTGATGTTATACT 60.397 44.000 0.00 0.00 42.15 2.12
622 633 4.816925 GGCCTGAAGAGGTTGATGTTATAC 59.183 45.833 0.00 0.00 42.15 1.47
623 634 4.721776 AGGCCTGAAGAGGTTGATGTTATA 59.278 41.667 3.11 0.00 42.15 0.98
624 635 3.525199 AGGCCTGAAGAGGTTGATGTTAT 59.475 43.478 3.11 0.00 42.15 1.89
625 636 2.912956 AGGCCTGAAGAGGTTGATGTTA 59.087 45.455 3.11 0.00 42.15 2.41
626 637 1.707427 AGGCCTGAAGAGGTTGATGTT 59.293 47.619 3.11 0.00 42.15 2.71
628 639 1.280133 TCAGGCCTGAAGAGGTTGATG 59.720 52.381 33.41 2.84 42.15 3.07
629 640 1.661463 TCAGGCCTGAAGAGGTTGAT 58.339 50.000 33.41 0.00 42.15 2.57
631 642 1.280133 TCATCAGGCCTGAAGAGGTTG 59.720 52.381 38.02 28.58 43.58 3.77
632 643 1.661463 TCATCAGGCCTGAAGAGGTT 58.339 50.000 38.02 18.96 43.58 3.50
638 649 5.539574 TGAAAAATTCTTCATCAGGCCTGAA 59.460 36.000 38.02 21.36 43.58 3.02
639 650 5.078949 TGAAAAATTCTTCATCAGGCCTGA 58.921 37.500 36.73 36.73 44.59 3.86
640 651 5.395682 TGAAAAATTCTTCATCAGGCCTG 57.604 39.130 27.87 27.87 30.31 4.85
643 654 5.347907 CAGCTTGAAAAATTCTTCATCAGGC 59.652 40.000 0.00 0.00 41.68 4.85
644 655 6.365247 CACAGCTTGAAAAATTCTTCATCAGG 59.635 38.462 0.00 0.00 35.31 3.86
645 656 6.921857 ACACAGCTTGAAAAATTCTTCATCAG 59.078 34.615 0.00 0.00 35.31 2.90
646 657 6.808829 ACACAGCTTGAAAAATTCTTCATCA 58.191 32.000 0.00 0.00 35.31 3.07
649 660 7.095910 TGAAACACAGCTTGAAAAATTCTTCA 58.904 30.769 0.00 0.00 33.48 3.02
651 662 7.983484 AGATGAAACACAGCTTGAAAAATTCTT 59.017 29.630 3.37 0.00 43.03 2.52
652 663 7.437267 CAGATGAAACACAGCTTGAAAAATTCT 59.563 33.333 3.37 0.00 43.03 2.40
653 664 7.436080 TCAGATGAAACACAGCTTGAAAAATTC 59.564 33.333 3.37 0.00 43.03 2.17
654 665 7.267128 TCAGATGAAACACAGCTTGAAAAATT 58.733 30.769 3.37 0.00 43.03 1.82
655 666 6.808829 TCAGATGAAACACAGCTTGAAAAAT 58.191 32.000 3.37 0.00 43.03 1.82
656 667 6.206395 TCAGATGAAACACAGCTTGAAAAA 57.794 33.333 3.37 0.00 43.03 1.94
657 668 5.833406 TCAGATGAAACACAGCTTGAAAA 57.167 34.783 3.37 0.00 43.03 2.29
658 669 5.766670 AGATCAGATGAAACACAGCTTGAAA 59.233 36.000 0.00 0.00 43.03 2.69
660 671 4.694037 CAGATCAGATGAAACACAGCTTGA 59.306 41.667 0.00 0.00 43.03 3.02
661 672 4.694037 TCAGATCAGATGAAACACAGCTTG 59.306 41.667 0.00 0.00 43.03 4.01
665 676 9.591792 TTATACTTCAGATCAGATGAAACACAG 57.408 33.333 7.84 0.00 36.30 3.66
666 677 9.371136 GTTATACTTCAGATCAGATGAAACACA 57.629 33.333 7.84 0.00 36.30 3.72
667 678 9.371136 TGTTATACTTCAGATCAGATGAAACAC 57.629 33.333 7.84 1.52 36.30 3.32
672 683 9.755804 GTTGATGTTATACTTCAGATCAGATGA 57.244 33.333 7.84 0.00 34.41 2.92
673 684 8.986847 GGTTGATGTTATACTTCAGATCAGATG 58.013 37.037 0.00 0.00 34.41 2.90
675 686 8.311395 AGGTTGATGTTATACTTCAGATCAGA 57.689 34.615 0.00 0.00 34.41 3.27
676 687 8.420222 AGAGGTTGATGTTATACTTCAGATCAG 58.580 37.037 0.00 0.00 34.41 2.90
677 688 8.311395 AGAGGTTGATGTTATACTTCAGATCA 57.689 34.615 0.00 0.00 34.41 2.92
678 689 9.255304 GAAGAGGTTGATGTTATACTTCAGATC 57.745 37.037 0.00 0.00 34.41 2.75
679 690 8.762645 TGAAGAGGTTGATGTTATACTTCAGAT 58.237 33.333 0.00 0.00 37.92 2.90
681 692 8.777865 TTGAAGAGGTTGATGTTATACTTCAG 57.222 34.615 0.00 0.00 41.67 3.02
682 693 9.219603 CTTTGAAGAGGTTGATGTTATACTTCA 57.780 33.333 0.00 0.00 39.97 3.02
683 694 8.178313 GCTTTGAAGAGGTTGATGTTATACTTC 58.822 37.037 0.00 0.00 34.87 3.01
684 695 7.121315 GGCTTTGAAGAGGTTGATGTTATACTT 59.879 37.037 0.00 0.00 0.00 2.24
685 696 6.599638 GGCTTTGAAGAGGTTGATGTTATACT 59.400 38.462 0.00 0.00 0.00 2.12
686 697 6.599638 AGGCTTTGAAGAGGTTGATGTTATAC 59.400 38.462 0.00 0.00 0.00 1.47
687 698 6.721318 AGGCTTTGAAGAGGTTGATGTTATA 58.279 36.000 0.00 0.00 0.00 0.98
691 702 3.515602 AGGCTTTGAAGAGGTTGATGT 57.484 42.857 0.00 0.00 0.00 3.06
692 703 5.649395 TCATTAGGCTTTGAAGAGGTTGATG 59.351 40.000 0.00 0.00 0.00 3.07
694 705 5.241403 TCATTAGGCTTTGAAGAGGTTGA 57.759 39.130 0.00 0.00 0.00 3.18
695 706 5.964958 TTCATTAGGCTTTGAAGAGGTTG 57.035 39.130 8.09 0.00 0.00 3.77
701 712 8.642020 CGAAAATTTCTTCATTAGGCTTTGAAG 58.358 33.333 23.54 23.54 46.57 3.02
702 713 8.141268 ACGAAAATTTCTTCATTAGGCTTTGAA 58.859 29.630 4.09 10.85 0.00 2.69
705 716 7.886338 AGACGAAAATTTCTTCATTAGGCTTT 58.114 30.769 13.47 0.00 30.97 3.51
706 717 7.454260 AGACGAAAATTTCTTCATTAGGCTT 57.546 32.000 13.47 0.00 30.97 4.35
707 718 7.454260 AAGACGAAAATTTCTTCATTAGGCT 57.546 32.000 13.47 0.00 30.97 4.58
708 719 8.427774 CAAAAGACGAAAATTTCTTCATTAGGC 58.572 33.333 13.47 0.00 30.55 3.93
712 723 9.463443 CCTACAAAAGACGAAAATTTCTTCATT 57.537 29.630 13.47 6.04 30.55 2.57
713 724 8.082242 CCCTACAAAAGACGAAAATTTCTTCAT 58.918 33.333 13.47 0.16 30.55 2.57
714 725 7.422399 CCCTACAAAAGACGAAAATTTCTTCA 58.578 34.615 13.47 0.00 30.55 3.02
715 726 6.861572 CCCCTACAAAAGACGAAAATTTCTTC 59.138 38.462 4.30 4.30 30.55 2.87
716 727 6.322969 ACCCCTACAAAAGACGAAAATTTCTT 59.677 34.615 4.09 0.00 33.32 2.52
717 728 5.831525 ACCCCTACAAAAGACGAAAATTTCT 59.168 36.000 4.09 0.00 0.00 2.52
718 729 5.918576 CACCCCTACAAAAGACGAAAATTTC 59.081 40.000 0.00 0.00 0.00 2.17
719 730 5.221362 CCACCCCTACAAAAGACGAAAATTT 60.221 40.000 0.00 0.00 0.00 1.82
720 731 4.279922 CCACCCCTACAAAAGACGAAAATT 59.720 41.667 0.00 0.00 0.00 1.82
721 732 3.824443 CCACCCCTACAAAAGACGAAAAT 59.176 43.478 0.00 0.00 0.00 1.82
722 733 3.117963 TCCACCCCTACAAAAGACGAAAA 60.118 43.478 0.00 0.00 0.00 2.29
723 734 2.438763 TCCACCCCTACAAAAGACGAAA 59.561 45.455 0.00 0.00 0.00 3.46
724 735 2.048601 TCCACCCCTACAAAAGACGAA 58.951 47.619 0.00 0.00 0.00 3.85
725 736 1.719529 TCCACCCCTACAAAAGACGA 58.280 50.000 0.00 0.00 0.00 4.20
726 737 2.356135 CATCCACCCCTACAAAAGACG 58.644 52.381 0.00 0.00 0.00 4.18
727 738 2.041216 ACCATCCACCCCTACAAAAGAC 59.959 50.000 0.00 0.00 0.00 3.01
728 739 2.307686 GACCATCCACCCCTACAAAAGA 59.692 50.000 0.00 0.00 0.00 2.52
729 740 2.308866 AGACCATCCACCCCTACAAAAG 59.691 50.000 0.00 0.00 0.00 2.27
730 741 2.354328 AGACCATCCACCCCTACAAAA 58.646 47.619 0.00 0.00 0.00 2.44
731 742 2.053747 AGACCATCCACCCCTACAAA 57.946 50.000 0.00 0.00 0.00 2.83
732 743 2.053747 AAGACCATCCACCCCTACAA 57.946 50.000 0.00 0.00 0.00 2.41
733 744 1.913419 GAAAGACCATCCACCCCTACA 59.087 52.381 0.00 0.00 0.00 2.74
734 745 1.212195 GGAAAGACCATCCACCCCTAC 59.788 57.143 0.00 0.00 36.92 3.18
735 746 1.203505 TGGAAAGACCATCCACCCCTA 60.204 52.381 0.00 0.00 44.64 3.53
736 747 0.477597 TGGAAAGACCATCCACCCCT 60.478 55.000 0.00 0.00 44.64 4.79
737 748 2.083715 TGGAAAGACCATCCACCCC 58.916 57.895 0.00 0.00 44.64 4.95
746 757 4.187694 CTCTGATGCTAACTGGAAAGACC 58.812 47.826 0.00 0.00 39.54 3.85
747 758 3.620821 GCTCTGATGCTAACTGGAAAGAC 59.379 47.826 0.00 0.00 0.00 3.01
748 759 3.261643 TGCTCTGATGCTAACTGGAAAGA 59.738 43.478 0.00 0.00 0.00 2.52
749 760 3.603532 TGCTCTGATGCTAACTGGAAAG 58.396 45.455 0.00 0.00 0.00 2.62
750 761 3.603532 CTGCTCTGATGCTAACTGGAAA 58.396 45.455 0.00 0.00 0.00 3.13
751 762 2.679059 GCTGCTCTGATGCTAACTGGAA 60.679 50.000 0.00 0.00 0.00 3.53
752 763 1.134580 GCTGCTCTGATGCTAACTGGA 60.135 52.381 0.00 0.00 0.00 3.86
753 764 1.297664 GCTGCTCTGATGCTAACTGG 58.702 55.000 0.00 0.00 0.00 4.00
754 765 2.019948 TGCTGCTCTGATGCTAACTG 57.980 50.000 0.00 0.00 0.00 3.16
755 766 2.775911 TTGCTGCTCTGATGCTAACT 57.224 45.000 0.00 0.00 0.00 2.24
756 767 5.490139 TTTATTGCTGCTCTGATGCTAAC 57.510 39.130 0.00 0.00 0.00 2.34
757 768 6.060136 AGATTTATTGCTGCTCTGATGCTAA 58.940 36.000 0.00 0.00 0.00 3.09
758 769 5.618236 AGATTTATTGCTGCTCTGATGCTA 58.382 37.500 0.00 0.00 0.00 3.49
759 770 4.462133 AGATTTATTGCTGCTCTGATGCT 58.538 39.130 0.00 0.00 0.00 3.79
760 771 4.275196 TGAGATTTATTGCTGCTCTGATGC 59.725 41.667 0.00 0.00 0.00 3.91
761 772 5.296035 TGTGAGATTTATTGCTGCTCTGATG 59.704 40.000 0.00 0.00 0.00 3.07
762 773 5.296283 GTGTGAGATTTATTGCTGCTCTGAT 59.704 40.000 0.00 0.00 0.00 2.90
763 774 4.633126 GTGTGAGATTTATTGCTGCTCTGA 59.367 41.667 0.00 0.00 0.00 3.27
764 775 4.493708 CGTGTGAGATTTATTGCTGCTCTG 60.494 45.833 0.00 0.00 0.00 3.35
772 783 3.270027 TGGGCTCGTGTGAGATTTATTG 58.730 45.455 0.00 0.00 45.57 1.90
774 785 2.501723 ACTGGGCTCGTGTGAGATTTAT 59.498 45.455 0.00 0.00 45.57 1.40
779 790 1.112916 TGAACTGGGCTCGTGTGAGA 61.113 55.000 0.00 0.00 45.57 3.27
780 791 0.668706 CTGAACTGGGCTCGTGTGAG 60.669 60.000 0.00 0.00 45.49 3.51
782 793 0.532862 AACTGAACTGGGCTCGTGTG 60.533 55.000 0.00 0.00 0.00 3.82
784 795 1.308998 AAAACTGAACTGGGCTCGTG 58.691 50.000 0.00 0.00 0.00 4.35
786 797 3.751175 TGAATAAAACTGAACTGGGCTCG 59.249 43.478 0.00 0.00 0.00 5.03
787 798 4.762251 ACTGAATAAAACTGAACTGGGCTC 59.238 41.667 0.00 0.00 0.00 4.70
788 799 4.729868 ACTGAATAAAACTGAACTGGGCT 58.270 39.130 0.00 0.00 0.00 5.19
791 802 7.496529 TCAGAACTGAATAAAACTGAACTGG 57.503 36.000 1.79 0.00 36.53 4.00
792 803 8.777413 TCATCAGAACTGAATAAAACTGAACTG 58.223 33.333 8.59 0.00 43.58 3.16
793 804 8.908786 TCATCAGAACTGAATAAAACTGAACT 57.091 30.769 8.59 0.00 43.58 3.01
794 805 9.604626 CTTCATCAGAACTGAATAAAACTGAAC 57.395 33.333 8.59 0.00 43.58 3.18
795 806 8.786898 CCTTCATCAGAACTGAATAAAACTGAA 58.213 33.333 8.59 10.40 43.58 3.02
796 807 8.156820 TCCTTCATCAGAACTGAATAAAACTGA 58.843 33.333 8.59 0.00 43.58 3.41
797 808 8.327941 TCCTTCATCAGAACTGAATAAAACTG 57.672 34.615 8.59 1.53 43.58 3.16
798 809 8.378565 TCTCCTTCATCAGAACTGAATAAAACT 58.621 33.333 8.59 0.00 43.58 2.66
799 810 8.447053 GTCTCCTTCATCAGAACTGAATAAAAC 58.553 37.037 8.59 0.00 43.58 2.43
800 811 8.156820 TGTCTCCTTCATCAGAACTGAATAAAA 58.843 33.333 8.59 1.35 43.58 1.52
801 812 7.679783 TGTCTCCTTCATCAGAACTGAATAAA 58.320 34.615 8.59 3.45 43.58 1.40
802 813 7.244886 TGTCTCCTTCATCAGAACTGAATAA 57.755 36.000 8.59 5.57 43.58 1.40
803 814 6.857437 TGTCTCCTTCATCAGAACTGAATA 57.143 37.500 8.59 0.00 43.58 1.75
804 815 5.752036 TGTCTCCTTCATCAGAACTGAAT 57.248 39.130 8.59 0.00 43.58 2.57
805 816 5.246883 TGATGTCTCCTTCATCAGAACTGAA 59.753 40.000 8.59 0.00 44.14 3.02
806 817 4.774200 TGATGTCTCCTTCATCAGAACTGA 59.226 41.667 6.98 6.98 44.14 3.41
807 818 5.082251 TGATGTCTCCTTCATCAGAACTG 57.918 43.478 4.77 0.00 44.14 3.16
813 824 2.475155 AGGCTGATGTCTCCTTCATCA 58.525 47.619 8.06 8.06 45.93 3.07
814 825 3.557228 AAGGCTGATGTCTCCTTCATC 57.443 47.619 0.00 0.00 41.16 2.92
821 832 0.723981 GCAACGAAGGCTGATGTCTC 59.276 55.000 0.00 0.00 0.00 3.36
822 833 0.322975 AGCAACGAAGGCTGATGTCT 59.677 50.000 0.00 0.00 40.80 3.41
830 841 0.519077 CCTGAAGAAGCAACGAAGGC 59.481 55.000 0.00 0.00 0.00 4.35
831 842 1.801178 GACCTGAAGAAGCAACGAAGG 59.199 52.381 0.00 0.00 0.00 3.46
836 847 1.801178 CTTCGGACCTGAAGAAGCAAC 59.199 52.381 16.44 0.00 46.64 4.17
837 848 1.416401 ACTTCGGACCTGAAGAAGCAA 59.584 47.619 23.89 0.00 46.64 3.91
838 849 1.048601 ACTTCGGACCTGAAGAAGCA 58.951 50.000 23.89 0.00 46.64 3.91
839 850 2.029290 TGTACTTCGGACCTGAAGAAGC 60.029 50.000 23.89 15.94 46.64 3.86
842 853 4.884668 ATTTGTACTTCGGACCTGAAGA 57.115 40.909 23.89 11.08 46.64 2.87
844 855 6.702716 AAAAATTTGTACTTCGGACCTGAA 57.297 33.333 0.00 0.00 0.00 3.02
865 876 2.093235 CCCCAACCAAAGCACTGAAAAA 60.093 45.455 0.00 0.00 0.00 1.94
866 877 1.484240 CCCCAACCAAAGCACTGAAAA 59.516 47.619 0.00 0.00 0.00 2.29
871 882 2.133641 GCACCCCAACCAAAGCACT 61.134 57.895 0.00 0.00 0.00 4.40
872 883 2.421314 GCACCCCAACCAAAGCAC 59.579 61.111 0.00 0.00 0.00 4.40
889 900 3.912907 CTACTACCTGGGCCGGCG 61.913 72.222 22.54 9.21 0.00 6.46
890 901 2.762875 ACTACTACCTGGGCCGGC 60.763 66.667 21.18 21.18 0.00 6.13
892 903 1.895020 TTGCACTACTACCTGGGCCG 61.895 60.000 0.00 0.00 0.00 6.13
901 912 1.594833 CCCAGGCGTTGCACTACTA 59.405 57.895 0.00 0.00 0.00 1.82
927 938 3.965539 CTTGCTGCTGGGGTCCTCG 62.966 68.421 0.00 0.00 0.00 4.63
928 939 2.045536 CTTGCTGCTGGGGTCCTC 60.046 66.667 0.00 0.00 0.00 3.71
949 960 1.846124 GAGGGAGGGTCCACCACAA 60.846 63.158 5.86 0.00 43.89 3.33
953 964 1.591768 TTTATGAGGGAGGGTCCACC 58.408 55.000 0.00 0.00 38.64 4.61
989 1000 3.365535 GGGTCATGTGCCCACAAC 58.634 61.111 18.74 0.24 45.41 3.32
996 1007 3.198409 TCTGATATGTGGGTCATGTGC 57.802 47.619 0.00 0.00 37.91 4.57
1031 1042 7.650104 GGCTAAGATCAAGTGTAGTATCTGTTC 59.350 40.741 0.00 0.00 0.00 3.18
1083 1094 4.664267 AGACCCAGGCCAGCAGGA 62.664 66.667 5.01 0.00 36.89 3.86
1085 1096 4.421515 CCAGACCCAGGCCAGCAG 62.422 72.222 5.01 0.00 0.00 4.24
1116 1127 1.271379 CCAGAAAGGAAGGAGGCGAAA 60.271 52.381 0.00 0.00 41.22 3.46
1119 1130 1.746991 GCCAGAAAGGAAGGAGGCG 60.747 63.158 0.00 0.00 41.22 5.52
1130 1141 1.371183 CACCTCACGGAGCCAGAAA 59.629 57.895 0.00 0.00 0.00 2.52
1133 1144 4.087892 CCCACCTCACGGAGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
1142 1153 2.637872 CCTCTTGTTTAGTCCCACCTCA 59.362 50.000 0.00 0.00 0.00 3.86
1177 1188 1.862806 GAACGGAACACAGAGCTGC 59.137 57.895 0.00 0.00 0.00 5.25
1203 1215 1.878656 AAACCGACCAGAGCCTCTCG 61.879 60.000 0.00 0.00 35.36 4.04
1205 1217 1.674057 CAAACCGACCAGAGCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
1209 1221 1.576421 CAAGCAAACCGACCAGAGC 59.424 57.895 0.00 0.00 0.00 4.09
1261 1273 0.958382 GCTTACGGCAATCACCACCA 60.958 55.000 0.00 0.00 41.35 4.17
1262 1274 1.800681 GCTTACGGCAATCACCACC 59.199 57.895 0.00 0.00 41.35 4.61
1284 1296 2.123854 CATGAGCTGCCAGGCCAT 60.124 61.111 9.64 1.51 0.00 4.40
1371 1383 0.250424 CATCATAGGGCGCCATGACA 60.250 55.000 30.85 6.64 34.15 3.58
1408 1430 2.897436 CATCTTGTTGAGCTCGATGGA 58.103 47.619 16.48 11.40 0.00 3.41
1471 1493 1.272092 TGACAGGGCTTTGATCTTGGG 60.272 52.381 0.00 0.00 0.00 4.12
1497 1519 7.415206 GGTTCTGCGAATATAAATTCACCAACT 60.415 37.037 0.00 0.00 41.44 3.16
1509 1531 5.295787 GTGTGATTTGGGTTCTGCGAATATA 59.704 40.000 0.00 0.00 0.00 0.86
1560 1582 2.353579 GGTAACATCGATTTTCACCCGG 59.646 50.000 0.00 0.00 0.00 5.73
1893 1915 0.752658 CCGTGCCATCATAGTCCTCA 59.247 55.000 0.00 0.00 0.00 3.86
1894 1916 0.034059 CCCGTGCCATCATAGTCCTC 59.966 60.000 0.00 0.00 0.00 3.71
2004 2026 1.159713 TGTCTGCTTGCTTCGGTGTG 61.160 55.000 0.00 0.00 0.00 3.82
2013 2035 1.032014 TCAAGGGTTTGTCTGCTTGC 58.968 50.000 0.00 0.00 35.73 4.01
2066 2088 4.460263 TCTCTTTGGTTCTTGCTTAGCAA 58.540 39.130 19.07 19.07 46.80 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.