Multiple sequence alignment - TraesCS4A01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G016900 chr4A 100.000 5402 0 0 1 5402 11368887 11363486 0.000000e+00 9976.0
1 TraesCS4A01G016900 chr4A 97.895 190 2 2 2678 2865 47137888 47138077 1.450000e-85 327.0
2 TraesCS4A01G016900 chr4A 95.500 200 7 2 2684 2882 519575673 519575475 8.730000e-83 318.0
3 TraesCS4A01G016900 chr4A 96.859 191 5 1 2678 2867 585545476 585545666 8.730000e-83 318.0
4 TraesCS4A01G016900 chr4A 100.000 64 0 0 1718 1781 11367107 11367044 9.500000e-23 119.0
5 TraesCS4A01G016900 chr4A 100.000 64 0 0 1781 1844 11367170 11367107 9.500000e-23 119.0
6 TraesCS4A01G016900 chr4B 95.103 1266 58 3 2866 4128 570734126 570735390 0.000000e+00 1991.0
7 TraesCS4A01G016900 chr4B 92.181 908 42 15 1781 2688 570733246 570734124 0.000000e+00 1256.0
8 TraesCS4A01G016900 chr4B 90.296 845 50 15 953 1781 570732475 570733303 0.000000e+00 1077.0
9 TraesCS4A01G016900 chr4B 94.237 642 23 6 4166 4801 570735398 570736031 0.000000e+00 968.0
10 TraesCS4A01G016900 chr4B 96.422 559 18 1 4844 5402 570736112 570736668 0.000000e+00 920.0
11 TraesCS4A01G016900 chr4B 88.259 741 78 5 126 864 570731559 570732292 0.000000e+00 878.0
12 TraesCS4A01G016900 chr4D 95.881 971 37 2 2866 3834 456492120 456493089 0.000000e+00 1568.0
13 TraesCS4A01G016900 chr4D 96.141 881 34 0 1808 2688 456491238 456492118 0.000000e+00 1439.0
14 TraesCS4A01G016900 chr4D 94.356 939 43 6 3869 4801 456493093 456494027 0.000000e+00 1432.0
15 TraesCS4A01G016900 chr4D 92.500 760 42 7 953 1702 456490464 456491218 0.000000e+00 1074.0
16 TraesCS4A01G016900 chr4D 89.556 766 72 7 126 889 456489533 456490292 0.000000e+00 965.0
17 TraesCS4A01G016900 chr4D 96.959 559 17 0 4844 5402 456494111 456494669 0.000000e+00 939.0
18 TraesCS4A01G016900 chr4D 100.000 37 0 0 1745 1781 456491238 456491274 9.710000e-08 69.4
19 TraesCS4A01G016900 chr5D 86.364 374 43 6 1806 2177 494069908 494069541 8.430000e-108 401.0
20 TraesCS4A01G016900 chr5D 85.829 374 49 3 1806 2177 493898476 493898847 1.410000e-105 394.0
21 TraesCS4A01G016900 chr5D 100.000 39 0 0 1743 1781 494069908 494069870 7.510000e-09 73.1
22 TraesCS4A01G016900 chr5D 97.436 39 1 0 1743 1781 493898476 493898514 3.490000e-07 67.6
23 TraesCS4A01G016900 chr6A 100.000 183 0 0 2684 2866 180309339 180309157 6.700000e-89 339.0
24 TraesCS4A01G016900 chr2A 97.927 193 2 2 2684 2876 88796218 88796028 3.120000e-87 333.0
25 TraesCS4A01G016900 chr2A 98.378 185 2 1 2684 2867 63805710 63805894 1.880000e-84 324.0
26 TraesCS4A01G016900 chr1A 99.454 183 1 0 2684 2866 398058668 398058486 3.120000e-87 333.0
27 TraesCS4A01G016900 chr1A 98.387 186 1 2 2683 2866 330766052 330765867 5.220000e-85 326.0
28 TraesCS4A01G016900 chr1A 92.424 132 9 1 1 132 141347328 141347198 2.570000e-43 187.0
29 TraesCS4A01G016900 chr5A 98.378 185 3 0 2684 2868 570367102 570366918 5.220000e-85 326.0
30 TraesCS4A01G016900 chr5A 92.424 132 10 0 1 132 238938841 238938710 7.140000e-44 189.0
31 TraesCS4A01G016900 chr6D 92.424 132 10 0 1 132 276916990 276916859 7.140000e-44 189.0
32 TraesCS4A01G016900 chr6D 91.729 133 11 0 1 133 143732460 143732592 9.240000e-43 185.0
33 TraesCS4A01G016900 chr3A 92.424 132 10 0 1 132 187188911 187188780 7.140000e-44 189.0
34 TraesCS4A01G016900 chr1D 92.857 126 9 0 1 126 178065929 178066054 3.320000e-42 183.0
35 TraesCS4A01G016900 chr1D 91.667 132 11 0 1 132 347128019 347127888 3.320000e-42 183.0
36 TraesCS4A01G016900 chr1D 91.667 132 11 0 1 132 422027643 422027512 3.320000e-42 183.0
37 TraesCS4A01G016900 chr2D 89.437 142 15 0 1 142 454442930 454443071 4.300000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G016900 chr4A 11363486 11368887 5401 True 3404.666667 9976 100.000000 1 5402 3 chr4A.!!$R2 5401
1 TraesCS4A01G016900 chr4B 570731559 570736668 5109 False 1181.666667 1991 92.749667 126 5402 6 chr4B.!!$F1 5276
2 TraesCS4A01G016900 chr4D 456489533 456494669 5136 False 1069.485714 1568 95.056143 126 5402 7 chr4D.!!$F1 5276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 621 0.035458 CGTCTCTTGGGGAAGCACTT 59.965 55.0 0.00 0.0 0.00 3.16 F
667 676 0.041238 ATCAACGGAGGACCCAGAGA 59.959 55.0 0.00 0.0 34.14 3.10 F
937 972 0.179048 GCCCCTATTTTTGCCATGCC 60.179 55.0 0.00 0.0 0.00 4.40 F
1776 1915 0.179062 AACTGCTCGCATCCATCCTC 60.179 55.0 0.00 0.0 0.00 3.71 F
3151 3290 0.110823 GCGATCGTGTTTGTGTGGAC 60.111 55.0 17.81 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1896 0.179062 GAGGATGGATGCGAGCAGTT 60.179 55.0 3.58 0.0 0.0 3.16 R
1759 1898 0.319727 GAGAGGATGGATGCGAGCAG 60.320 60.0 3.58 0.0 0.0 4.24 R
1914 2053 0.322456 TGTATGAGTTGCAGCCCACC 60.322 55.0 0.00 0.0 0.0 4.61 R
3619 3760 0.676466 ATTCAATCTTCACGCGGCCA 60.676 50.0 12.47 0.0 0.0 5.36 R
4947 5167 0.036164 TGGTGGCGAGCTGTGTAATT 59.964 50.0 0.00 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.747686 TCCCTCTTGGTGCGTTCC 59.252 61.111 0.00 0.00 34.77 3.62
18 19 1.841556 TCCCTCTTGGTGCGTTCCT 60.842 57.895 0.40 0.00 34.77 3.36
19 20 1.073199 CCCTCTTGGTGCGTTCCTT 59.927 57.895 0.40 0.00 0.00 3.36
20 21 0.323629 CCCTCTTGGTGCGTTCCTTA 59.676 55.000 0.40 0.00 0.00 2.69
21 22 1.439679 CCTCTTGGTGCGTTCCTTAC 58.560 55.000 0.40 0.00 0.00 2.34
22 23 1.270625 CCTCTTGGTGCGTTCCTTACA 60.271 52.381 0.40 0.00 0.00 2.41
23 24 2.489971 CTCTTGGTGCGTTCCTTACAA 58.510 47.619 0.40 0.00 0.00 2.41
24 25 2.875933 CTCTTGGTGCGTTCCTTACAAA 59.124 45.455 0.40 0.00 0.00 2.83
25 26 3.482436 TCTTGGTGCGTTCCTTACAAAT 58.518 40.909 0.40 0.00 0.00 2.32
26 27 3.886505 TCTTGGTGCGTTCCTTACAAATT 59.113 39.130 0.40 0.00 0.00 1.82
27 28 5.064558 TCTTGGTGCGTTCCTTACAAATTA 58.935 37.500 0.40 0.00 0.00 1.40
28 29 5.708230 TCTTGGTGCGTTCCTTACAAATTAT 59.292 36.000 0.40 0.00 0.00 1.28
29 30 5.303747 TGGTGCGTTCCTTACAAATTATG 57.696 39.130 0.40 0.00 0.00 1.90
30 31 5.004448 TGGTGCGTTCCTTACAAATTATGA 58.996 37.500 0.40 0.00 0.00 2.15
31 32 5.123186 TGGTGCGTTCCTTACAAATTATGAG 59.877 40.000 0.40 0.00 0.00 2.90
32 33 5.448632 GGTGCGTTCCTTACAAATTATGAGG 60.449 44.000 0.00 0.00 0.00 3.86
33 34 4.638421 TGCGTTCCTTACAAATTATGAGGG 59.362 41.667 1.84 0.00 0.00 4.30
34 35 4.879545 GCGTTCCTTACAAATTATGAGGGA 59.120 41.667 1.84 0.00 0.00 4.20
35 36 5.355910 GCGTTCCTTACAAATTATGAGGGAA 59.644 40.000 0.00 0.00 34.67 3.97
36 37 6.127842 GCGTTCCTTACAAATTATGAGGGAAA 60.128 38.462 0.00 0.00 36.78 3.13
37 38 7.576098 GCGTTCCTTACAAATTATGAGGGAAAA 60.576 37.037 0.00 0.00 36.78 2.29
38 39 8.466798 CGTTCCTTACAAATTATGAGGGAAAAT 58.533 33.333 0.00 0.00 36.78 1.82
39 40 9.586435 GTTCCTTACAAATTATGAGGGAAAATG 57.414 33.333 0.00 0.00 36.78 2.32
40 41 7.781056 TCCTTACAAATTATGAGGGAAAATGC 58.219 34.615 1.84 0.00 0.00 3.56
41 42 7.398618 TCCTTACAAATTATGAGGGAAAATGCA 59.601 33.333 0.00 0.00 0.00 3.96
42 43 8.206189 CCTTACAAATTATGAGGGAAAATGCAT 58.794 33.333 0.00 0.00 0.00 3.96
43 44 9.603921 CTTACAAATTATGAGGGAAAATGCATT 57.396 29.630 5.99 5.99 0.00 3.56
46 47 8.980596 ACAAATTATGAGGGAAAATGCATTAGA 58.019 29.630 13.39 0.00 0.00 2.10
47 48 9.820725 CAAATTATGAGGGAAAATGCATTAGAA 57.179 29.630 13.39 0.00 0.00 2.10
54 55 8.641541 TGAGGGAAAATGCATTAGAATTATTCC 58.358 33.333 21.06 21.06 33.58 3.01
55 56 8.551682 AGGGAAAATGCATTAGAATTATTCCA 57.448 30.769 26.47 0.00 34.71 3.53
56 57 8.991275 AGGGAAAATGCATTAGAATTATTCCAA 58.009 29.630 26.47 0.00 34.71 3.53
57 58 9.612066 GGGAAAATGCATTAGAATTATTCCAAA 57.388 29.630 26.47 0.00 34.71 3.28
62 63 9.669887 AATGCATTAGAATTATTCCAAAAAGCA 57.330 25.926 11.02 13.43 31.43 3.91
63 64 9.841295 ATGCATTAGAATTATTCCAAAAAGCAT 57.159 25.926 15.58 15.58 31.82 3.79
64 65 9.669887 TGCATTAGAATTATTCCAAAAAGCATT 57.330 25.926 0.78 0.00 0.00 3.56
116 117 9.590451 ACAGTAAGAAAATATGATGCAAAATGG 57.410 29.630 0.00 0.00 0.00 3.16
117 118 9.806203 CAGTAAGAAAATATGATGCAAAATGGA 57.194 29.630 0.00 0.00 0.00 3.41
118 119 9.807649 AGTAAGAAAATATGATGCAAAATGGAC 57.192 29.630 0.00 0.00 0.00 4.02
119 120 7.760131 AAGAAAATATGATGCAAAATGGACG 57.240 32.000 0.00 0.00 0.00 4.79
120 121 5.750067 AGAAAATATGATGCAAAATGGACGC 59.250 36.000 0.00 0.00 0.00 5.19
121 122 2.753989 TATGATGCAAAATGGACGCG 57.246 45.000 3.53 3.53 0.00 6.01
122 123 0.810648 ATGATGCAAAATGGACGCGT 59.189 45.000 13.85 13.85 0.00 6.01
123 124 0.167908 TGATGCAAAATGGACGCGTC 59.832 50.000 30.67 30.67 41.15 5.19
124 125 0.167908 GATGCAAAATGGACGCGTCA 59.832 50.000 37.26 24.47 40.60 4.35
129 130 0.039527 AAAATGGACGCGTCAAAGCC 60.040 50.000 37.26 22.78 0.00 4.35
139 140 1.747206 GCGTCAAAGCCCCATAGTCAT 60.747 52.381 0.00 0.00 0.00 3.06
179 181 3.278574 CACAAAGTGGACCTCAGTCAAA 58.721 45.455 0.00 0.00 45.48 2.69
205 207 1.623811 CTCCTTCTTTCTCACCGGGAA 59.376 52.381 6.32 0.00 0.00 3.97
225 227 2.511600 CACCTAAAGCCTCCGCCG 60.512 66.667 0.00 0.00 34.57 6.46
231 233 0.179084 TAAAGCCTCCGCCGATCAAG 60.179 55.000 0.00 0.00 34.57 3.02
267 269 2.668212 CGAGGTGCCGCCAAGAAA 60.668 61.111 0.00 0.00 40.61 2.52
274 276 1.964373 GCCGCCAAGAAAACCTCGA 60.964 57.895 0.00 0.00 0.00 4.04
275 277 1.305930 GCCGCCAAGAAAACCTCGAT 61.306 55.000 0.00 0.00 0.00 3.59
288 290 5.437191 AAACCTCGATCAATTAAGTCCCT 57.563 39.130 0.00 0.00 0.00 4.20
296 298 5.626809 CGATCAATTAAGTCCCTGTCTTGGA 60.627 44.000 0.00 0.00 0.00 3.53
316 318 1.001020 ATTGGGATGTCGCCAAGCA 60.001 52.632 0.00 0.00 32.46 3.91
362 364 0.962356 ATCGCCAAAGCTCCACCAAG 60.962 55.000 0.00 0.00 36.60 3.61
370 372 0.886490 AGCTCCACCAAGCAACTTCG 60.886 55.000 0.00 0.00 45.00 3.79
381 389 0.598065 GCAACTTCGGCAAATGGAGT 59.402 50.000 0.00 0.00 0.00 3.85
382 390 1.401539 GCAACTTCGGCAAATGGAGTC 60.402 52.381 0.00 0.00 0.00 3.36
383 391 2.154462 CAACTTCGGCAAATGGAGTCT 58.846 47.619 0.00 0.00 0.00 3.24
384 392 2.554032 CAACTTCGGCAAATGGAGTCTT 59.446 45.455 0.00 0.00 0.00 3.01
385 393 2.427506 ACTTCGGCAAATGGAGTCTTC 58.572 47.619 0.00 0.00 0.00 2.87
386 394 2.224523 ACTTCGGCAAATGGAGTCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
390 398 3.012518 CGGCAAATGGAGTCTTCATCTT 58.987 45.455 0.00 0.00 0.00 2.40
399 407 4.220602 TGGAGTCTTCATCTTCGTCATCAA 59.779 41.667 0.00 0.00 0.00 2.57
403 411 7.301068 AGTCTTCATCTTCGTCATCAAAATC 57.699 36.000 0.00 0.00 0.00 2.17
410 418 4.819088 TCTTCGTCATCAAAATCACACCAA 59.181 37.500 0.00 0.00 0.00 3.67
423 431 2.936032 ACCAAGTGGCCTCCTCCC 60.936 66.667 3.32 0.00 39.32 4.30
450 458 2.032071 CGCCTTCGTCCCCAAAGT 59.968 61.111 0.00 0.00 0.00 2.66
472 480 1.081892 CACATCGGACTCCAGCAAAG 58.918 55.000 0.00 0.00 0.00 2.77
479 487 2.747855 CTCCAGCAAAGCCGGTCC 60.748 66.667 1.90 0.00 0.00 4.46
567 576 3.576550 ACCCAATGGTACGAGCAAAATTT 59.423 39.130 0.00 0.00 45.45 1.82
577 586 2.939103 CGAGCAAAATTTCCTCCTCGAT 59.061 45.455 17.47 0.00 43.30 3.59
587 596 1.288439 CTCCTCGATGCCGATGAGG 59.712 63.158 10.74 7.23 46.64 3.86
601 610 0.534412 ATGAGGCTCCACGTCTCTTG 59.466 55.000 12.86 0.00 44.79 3.02
608 617 1.376037 CCACGTCTCTTGGGGAAGC 60.376 63.158 0.00 0.00 0.00 3.86
611 620 1.122019 ACGTCTCTTGGGGAAGCACT 61.122 55.000 0.00 0.00 0.00 4.40
612 621 0.035458 CGTCTCTTGGGGAAGCACTT 59.965 55.000 0.00 0.00 0.00 3.16
614 623 2.675317 CGTCTCTTGGGGAAGCACTTAG 60.675 54.545 0.00 0.00 0.00 2.18
616 625 2.834549 TCTCTTGGGGAAGCACTTAGAG 59.165 50.000 0.00 0.00 0.00 2.43
630 639 1.605058 TTAGAGGTCGTCAGCAGGCC 61.605 60.000 0.00 0.00 0.00 5.19
639 648 0.610232 GTCAGCAGGCCAAGGTCATT 60.610 55.000 5.01 0.00 0.00 2.57
667 676 0.041238 ATCAACGGAGGACCCAGAGA 59.959 55.000 0.00 0.00 34.14 3.10
674 683 0.534873 GAGGACCCAGAGAGTTGCTC 59.465 60.000 0.00 0.00 44.29 4.26
694 703 2.011947 CTGTGCCATGTCCATACACAG 58.988 52.381 19.64 19.64 42.96 3.66
705 714 1.833630 CCATACACAGCCTCCTCTTGA 59.166 52.381 0.00 0.00 0.00 3.02
710 719 0.759346 ACAGCCTCCTCTTGAACGTT 59.241 50.000 0.00 0.00 0.00 3.99
728 738 4.184629 ACGTTGTCTATTTGATCCTCTGC 58.815 43.478 0.00 0.00 0.00 4.26
732 742 4.625028 TGTCTATTTGATCCTCTGCGATG 58.375 43.478 0.00 0.00 0.00 3.84
740 750 0.976641 TCCTCTGCGATGAACCAAGT 59.023 50.000 0.00 0.00 0.00 3.16
761 771 1.666553 CAGTTTGCCGCGAGTACCA 60.667 57.895 8.23 0.00 0.00 3.25
776 786 3.636231 CCACCGCTCAACCCCTCA 61.636 66.667 0.00 0.00 0.00 3.86
778 788 2.526873 ACCGCTCAACCCCTCAGT 60.527 61.111 0.00 0.00 0.00 3.41
826 836 2.801342 GCCATCACGCTAGAGAAAGAGG 60.801 54.545 0.00 0.00 0.00 3.69
834 844 4.466726 ACGCTAGAGAAAGAGGGTACAAAT 59.533 41.667 0.00 0.00 37.11 2.32
846 856 1.732259 GGTACAAATGAGTGAGCGTGG 59.268 52.381 0.00 0.00 0.00 4.94
866 876 2.678336 GGAACAAAAGGCTCGAGGTATG 59.322 50.000 15.58 0.00 0.00 2.39
877 887 1.182385 CGAGGTATGGGCTCCTCTCC 61.182 65.000 9.11 0.00 45.57 3.71
898 929 8.463930 TCTCCAGGTGCCATATTTTTAATTAG 57.536 34.615 0.00 0.00 0.00 1.73
900 931 8.602472 TCCAGGTGCCATATTTTTAATTAGTT 57.398 30.769 0.00 0.00 0.00 2.24
901 932 9.702253 TCCAGGTGCCATATTTTTAATTAGTTA 57.298 29.630 0.00 0.00 0.00 2.24
937 972 0.179048 GCCCCTATTTTTGCCATGCC 60.179 55.000 0.00 0.00 0.00 4.40
941 976 3.272581 CCCTATTTTTGCCATGCCAAAG 58.727 45.455 1.76 0.00 36.21 2.77
947 982 2.046988 GCCATGCCAAAGTTGCCC 60.047 61.111 0.00 0.00 0.00 5.36
950 985 2.996734 ATGCCAAAGTTGCCCCCG 60.997 61.111 0.00 0.00 0.00 5.73
954 989 2.203422 CAAAGTTGCCCCCGTGGA 60.203 61.111 0.00 0.00 35.39 4.02
976 1098 2.459555 ATGATCAAATGTCCCACCCC 57.540 50.000 0.00 0.00 0.00 4.95
1005 1127 2.518949 CACCAAAGAAATTCGATGGCG 58.481 47.619 16.37 6.80 32.54 5.69
1031 1153 2.117865 CTGCTCCTCTTCCTCCATCTT 58.882 52.381 0.00 0.00 0.00 2.40
1077 1199 0.832135 TCCATATCTCCCACCTCGCC 60.832 60.000 0.00 0.00 0.00 5.54
1114 1236 2.197577 CGAATCTTCCGCCTCTCTTTC 58.802 52.381 0.00 0.00 0.00 2.62
1174 1299 2.604912 AGTTCCCCCAATCTGTTTCC 57.395 50.000 0.00 0.00 0.00 3.13
1176 1301 1.077169 GTTCCCCCAATCTGTTTCCCT 59.923 52.381 0.00 0.00 0.00 4.20
1177 1302 1.466858 TCCCCCAATCTGTTTCCCTT 58.533 50.000 0.00 0.00 0.00 3.95
1229 1363 5.975693 TGGGGTCAAATTATTTCACACTC 57.024 39.130 0.00 0.00 0.00 3.51
1233 1367 5.088739 GGTCAAATTATTTCACACTCGCTG 58.911 41.667 0.00 0.00 0.00 5.18
1308 1446 2.239907 AGGAACCCTAAGAATCCACTGC 59.760 50.000 0.00 0.00 34.30 4.40
1366 1505 3.065371 CGCTCACAGTTGGAAAAACTCTT 59.935 43.478 0.00 0.00 0.00 2.85
1375 1514 8.624776 ACAGTTGGAAAAACTCTTAAGATCTTG 58.375 33.333 18.47 3.59 0.00 3.02
1422 1561 8.450578 TTTCTATTGCGATATTTGAACCTGAT 57.549 30.769 0.00 0.00 0.00 2.90
1437 1576 6.018469 TGAACCTGATTTGGGATTCTTGATT 58.982 36.000 0.00 0.00 0.00 2.57
1635 1774 4.687483 GGTCATGTGAGAGCAAATTTTTGG 59.313 41.667 5.28 0.00 38.57 3.28
1672 1811 9.613428 CAGGGATACTATGTCATTTAGTTGAAA 57.387 33.333 0.00 0.00 32.35 2.69
1689 1828 5.530915 AGTTGAAATGGACGAATGTCTTTGA 59.469 36.000 0.00 0.00 44.83 2.69
1702 1841 3.355378 TGTCTTTGATACCCAATGCCTG 58.645 45.455 0.00 0.00 34.23 4.85
1704 1843 4.016444 GTCTTTGATACCCAATGCCTGAA 58.984 43.478 0.00 0.00 34.23 3.02
1706 1845 2.734755 TGATACCCAATGCCTGAAGG 57.265 50.000 0.00 0.00 38.53 3.46
1720 1859 0.539986 TGAAGGCCCTAACCGCTAAG 59.460 55.000 0.00 0.00 33.69 2.18
1733 1872 6.475402 CCTAACCGCTAAGCCAATTAAATTTG 59.525 38.462 0.00 0.00 0.00 2.32
1734 1873 5.652994 ACCGCTAAGCCAATTAAATTTGA 57.347 34.783 0.00 0.00 0.00 2.69
1737 1876 5.516339 CCGCTAAGCCAATTAAATTTGAGTG 59.484 40.000 0.00 1.87 0.00 3.51
1738 1877 6.092748 CGCTAAGCCAATTAAATTTGAGTGT 58.907 36.000 9.19 0.00 0.00 3.55
1739 1878 6.033831 CGCTAAGCCAATTAAATTTGAGTGTG 59.966 38.462 9.19 3.05 0.00 3.82
1740 1879 6.868339 GCTAAGCCAATTAAATTTGAGTGTGT 59.132 34.615 9.19 0.00 0.00 3.72
1741 1880 7.062255 GCTAAGCCAATTAAATTTGAGTGTGTC 59.938 37.037 9.19 0.00 0.00 3.67
1742 1881 6.655078 AGCCAATTAAATTTGAGTGTGTCT 57.345 33.333 9.19 1.81 0.00 3.41
1743 1882 6.449698 AGCCAATTAAATTTGAGTGTGTCTG 58.550 36.000 9.19 0.00 0.00 3.51
1744 1883 6.040842 AGCCAATTAAATTTGAGTGTGTCTGT 59.959 34.615 9.19 0.00 0.00 3.41
1745 1884 6.144402 GCCAATTAAATTTGAGTGTGTCTGTG 59.856 38.462 9.19 0.00 0.00 3.66
1746 1885 7.202526 CCAATTAAATTTGAGTGTGTCTGTGT 58.797 34.615 9.19 0.00 0.00 3.72
1747 1886 7.167968 CCAATTAAATTTGAGTGTGTCTGTGTG 59.832 37.037 9.19 0.00 0.00 3.82
1748 1887 6.751514 TTAAATTTGAGTGTGTCTGTGTGT 57.248 33.333 0.00 0.00 0.00 3.72
1749 1888 4.621068 AATTTGAGTGTGTCTGTGTGTG 57.379 40.909 0.00 0.00 0.00 3.82
1750 1889 1.368641 TTGAGTGTGTCTGTGTGTGC 58.631 50.000 0.00 0.00 0.00 4.57
1751 1890 0.536724 TGAGTGTGTCTGTGTGTGCT 59.463 50.000 0.00 0.00 0.00 4.40
1752 1891 0.933097 GAGTGTGTCTGTGTGTGCTG 59.067 55.000 0.00 0.00 0.00 4.41
1753 1892 1.091771 AGTGTGTCTGTGTGTGCTGC 61.092 55.000 0.00 0.00 0.00 5.25
1754 1893 1.078567 TGTGTCTGTGTGTGCTGCA 60.079 52.632 0.00 0.00 0.00 4.41
1755 1894 1.091197 TGTGTCTGTGTGTGCTGCAG 61.091 55.000 10.11 10.11 0.00 4.41
1756 1895 2.182181 TGTCTGTGTGTGCTGCAGC 61.182 57.895 31.89 31.89 42.50 5.25
1772 1911 3.506108 GCAACTGCTCGCATCCAT 58.494 55.556 0.00 0.00 38.21 3.41
1773 1912 1.354506 GCAACTGCTCGCATCCATC 59.645 57.895 0.00 0.00 38.21 3.51
1774 1913 2.020131 CAACTGCTCGCATCCATCC 58.980 57.895 0.00 0.00 0.00 3.51
1775 1914 0.463295 CAACTGCTCGCATCCATCCT 60.463 55.000 0.00 0.00 0.00 3.24
1776 1915 0.179062 AACTGCTCGCATCCATCCTC 60.179 55.000 0.00 0.00 0.00 3.71
1777 1916 1.047596 ACTGCTCGCATCCATCCTCT 61.048 55.000 0.00 0.00 0.00 3.69
1778 1917 0.319727 CTGCTCGCATCCATCCTCTC 60.320 60.000 0.00 0.00 0.00 3.20
1779 1918 0.758310 TGCTCGCATCCATCCTCTCT 60.758 55.000 0.00 0.00 0.00 3.10
1780 1919 0.392336 GCTCGCATCCATCCTCTCTT 59.608 55.000 0.00 0.00 0.00 2.85
1781 1920 1.615883 GCTCGCATCCATCCTCTCTTA 59.384 52.381 0.00 0.00 0.00 2.10
1782 1921 2.036475 GCTCGCATCCATCCTCTCTTAA 59.964 50.000 0.00 0.00 0.00 1.85
1783 1922 3.860378 GCTCGCATCCATCCTCTCTTAAG 60.860 52.174 0.00 0.00 0.00 1.85
1784 1923 2.036475 TCGCATCCATCCTCTCTTAAGC 59.964 50.000 0.00 0.00 0.00 3.09
1785 1924 2.777094 GCATCCATCCTCTCTTAAGCC 58.223 52.381 0.00 0.00 0.00 4.35
1786 1925 2.105477 GCATCCATCCTCTCTTAAGCCA 59.895 50.000 0.00 0.00 0.00 4.75
1787 1926 3.434167 GCATCCATCCTCTCTTAAGCCAA 60.434 47.826 0.00 0.00 0.00 4.52
1788 1927 4.749166 GCATCCATCCTCTCTTAAGCCAAT 60.749 45.833 0.00 0.00 0.00 3.16
1789 1928 5.383476 CATCCATCCTCTCTTAAGCCAATT 58.617 41.667 0.00 0.00 0.00 2.32
1790 1929 6.537355 CATCCATCCTCTCTTAAGCCAATTA 58.463 40.000 0.00 0.00 0.00 1.40
1791 1930 6.575244 TCCATCCTCTCTTAAGCCAATTAA 57.425 37.500 0.00 0.00 32.41 1.40
1792 1931 6.969043 TCCATCCTCTCTTAAGCCAATTAAA 58.031 36.000 0.00 0.00 32.98 1.52
1793 1932 7.586349 TCCATCCTCTCTTAAGCCAATTAAAT 58.414 34.615 0.00 0.00 32.98 1.40
1794 1933 8.061304 TCCATCCTCTCTTAAGCCAATTAAATT 58.939 33.333 0.00 0.00 32.98 1.82
1795 1934 8.699130 CCATCCTCTCTTAAGCCAATTAAATTT 58.301 33.333 0.00 0.00 32.98 1.82
1796 1935 9.525409 CATCCTCTCTTAAGCCAATTAAATTTG 57.475 33.333 0.00 0.00 32.98 2.32
1797 1936 8.877864 TCCTCTCTTAAGCCAATTAAATTTGA 57.122 30.769 0.00 0.00 32.98 2.69
1798 1937 8.960591 TCCTCTCTTAAGCCAATTAAATTTGAG 58.039 33.333 0.00 0.00 32.98 3.02
1799 1938 8.743714 CCTCTCTTAAGCCAATTAAATTTGAGT 58.256 33.333 0.00 0.00 32.98 3.41
1800 1939 9.565213 CTCTCTTAAGCCAATTAAATTTGAGTG 57.435 33.333 0.00 1.87 32.98 3.51
1801 1940 9.077885 TCTCTTAAGCCAATTAAATTTGAGTGT 57.922 29.630 9.19 0.00 32.98 3.55
1802 1941 9.132521 CTCTTAAGCCAATTAAATTTGAGTGTG 57.867 33.333 9.19 3.05 32.98 3.82
1803 1942 8.637986 TCTTAAGCCAATTAAATTTGAGTGTGT 58.362 29.630 9.19 0.00 32.98 3.72
1804 1943 8.810652 TTAAGCCAATTAAATTTGAGTGTGTC 57.189 30.769 9.19 0.00 30.28 3.67
1805 1944 6.655078 AGCCAATTAAATTTGAGTGTGTCT 57.345 33.333 9.19 1.81 0.00 3.41
1806 1945 6.449698 AGCCAATTAAATTTGAGTGTGTCTG 58.550 36.000 9.19 0.00 0.00 3.51
1850 1989 4.450419 CGCATCCATCCTCTCTTTATTGAC 59.550 45.833 0.00 0.00 0.00 3.18
1865 2004 1.821216 TTGACGGCCTGGAGATTTTC 58.179 50.000 0.00 0.00 0.00 2.29
1914 2053 5.393896 GCAATTTCTGAAATCTCTTCCCCAG 60.394 44.000 15.43 0.00 0.00 4.45
1918 2057 1.635487 TGAAATCTCTTCCCCAGGTGG 59.365 52.381 0.00 0.00 0.00 4.61
1970 2109 4.537135 AGTACAGAACACCGTGATTCAT 57.463 40.909 5.28 1.83 0.00 2.57
2030 2169 8.219868 ACCTCAATATCACCATATCATGTTTGA 58.780 33.333 0.00 0.00 36.00 2.69
2199 2338 6.633500 TTATGTGTTTCAAGAACTCCCTTG 57.367 37.500 0.00 0.00 43.58 3.61
2207 2346 5.152623 TCAAGAACTCCCTTGTATCTGTG 57.847 43.478 0.00 0.00 42.95 3.66
2285 2424 1.114119 TTGCTGTTTCATGCCTGCCA 61.114 50.000 0.00 0.00 0.00 4.92
2318 2457 1.148310 CAGTACTCTGCAAACCCACG 58.852 55.000 0.00 0.00 34.79 4.94
2328 2467 1.448985 CAAACCCACGTCACCCATAG 58.551 55.000 0.00 0.00 0.00 2.23
2354 2493 3.251004 GCACTAACTGGTGTCCTCTTTTG 59.749 47.826 0.00 0.00 39.21 2.44
2416 2555 2.731572 CTTCCAAGGATGTGCAGGAAT 58.268 47.619 2.17 0.00 37.69 3.01
2558 2697 8.708378 TGACTATACTGGATGAGATTGTTTCAT 58.292 33.333 0.00 0.00 37.96 2.57
2673 2812 7.076842 AGGTATTTCATCACAATTCTGTTCG 57.923 36.000 0.00 0.00 31.64 3.95
2688 2827 3.621268 TCTGTTCGAACTTCTTTGGTGTG 59.379 43.478 27.32 5.17 0.00 3.82
2689 2828 3.340034 TGTTCGAACTTCTTTGGTGTGT 58.660 40.909 27.32 0.00 0.00 3.72
2690 2829 3.372822 TGTTCGAACTTCTTTGGTGTGTC 59.627 43.478 27.32 0.00 0.00 3.67
2691 2830 3.536956 TCGAACTTCTTTGGTGTGTCT 57.463 42.857 0.00 0.00 0.00 3.41
2692 2831 4.659111 TCGAACTTCTTTGGTGTGTCTA 57.341 40.909 0.00 0.00 0.00 2.59
2693 2832 4.617959 TCGAACTTCTTTGGTGTGTCTAG 58.382 43.478 0.00 0.00 0.00 2.43
2694 2833 3.741344 CGAACTTCTTTGGTGTGTCTAGG 59.259 47.826 0.00 0.00 0.00 3.02
2695 2834 3.771577 ACTTCTTTGGTGTGTCTAGGG 57.228 47.619 0.00 0.00 0.00 3.53
2696 2835 2.224548 ACTTCTTTGGTGTGTCTAGGGC 60.225 50.000 0.00 0.00 0.00 5.19
2697 2836 1.429930 TCTTTGGTGTGTCTAGGGCA 58.570 50.000 0.00 0.00 0.00 5.36
2698 2837 1.071699 TCTTTGGTGTGTCTAGGGCAC 59.928 52.381 10.20 10.20 37.37 5.01
2699 2838 0.840617 TTTGGTGTGTCTAGGGCACA 59.159 50.000 14.22 14.22 43.60 4.57
2700 2839 1.064003 TTGGTGTGTCTAGGGCACAT 58.936 50.000 18.92 0.00 46.66 3.21
2701 2840 0.613260 TGGTGTGTCTAGGGCACATC 59.387 55.000 18.92 18.69 46.66 3.06
2702 2841 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
2703 2842 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
2704 2843 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
2705 2844 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
2706 2845 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
2707 2846 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
2732 2871 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2733 2872 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2734 2873 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2735 2874 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
2736 2875 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
2737 2876 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
2738 2877 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
2739 2878 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
2740 2879 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
2741 2880 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
2742 2881 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2743 2882 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2744 2883 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
2745 2884 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
2746 2885 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
2747 2886 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
2748 2887 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
2749 2888 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
2750 2889 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
2751 2890 8.846943 TCTAAGTGAGTGAATCAAGCATAAAA 57.153 30.769 0.00 0.00 40.43 1.52
2752 2891 8.939929 TCTAAGTGAGTGAATCAAGCATAAAAG 58.060 33.333 0.00 0.00 40.43 2.27
2753 2892 7.750229 AAGTGAGTGAATCAAGCATAAAAGA 57.250 32.000 0.00 0.00 40.43 2.52
2754 2893 7.750229 AGTGAGTGAATCAAGCATAAAAGAA 57.250 32.000 0.00 0.00 40.43 2.52
2755 2894 8.169977 AGTGAGTGAATCAAGCATAAAAGAAA 57.830 30.769 0.00 0.00 40.43 2.52
2756 2895 8.632679 AGTGAGTGAATCAAGCATAAAAGAAAA 58.367 29.630 0.00 0.00 40.43 2.29
2757 2896 9.248291 GTGAGTGAATCAAGCATAAAAGAAAAA 57.752 29.630 0.00 0.00 40.43 1.94
2758 2897 9.467258 TGAGTGAATCAAGCATAAAAGAAAAAG 57.533 29.630 0.00 0.00 34.02 2.27
2759 2898 9.683069 GAGTGAATCAAGCATAAAAGAAAAAGA 57.317 29.630 0.00 0.00 0.00 2.52
2790 2929 9.442047 AGAGAAAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
2824 2963 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
2825 2964 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
2826 2965 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
2827 2966 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
2828 2967 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
2829 2968 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
2830 2969 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
2831 2970 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
2832 2971 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
2836 2975 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
2837 2976 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
2838 2977 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2878 3017 9.738832 TTTAGCAAAACTGTAACAAGTAAATCC 57.261 29.630 0.00 0.00 0.00 3.01
2879 3018 6.745116 AGCAAAACTGTAACAAGTAAATCCC 58.255 36.000 0.00 0.00 0.00 3.85
2900 3039 3.571401 CCTGTCTGGGCAAATAATGATCC 59.429 47.826 0.00 0.00 0.00 3.36
2904 3043 4.590222 GTCTGGGCAAATAATGATCCCATT 59.410 41.667 0.00 0.00 45.13 3.16
2943 3082 3.856521 GCTCGCTATGTGCACATATCTAG 59.143 47.826 33.66 29.37 43.06 2.43
2990 3129 6.603237 TTTTGCTATGGTCACTGATTATCG 57.397 37.500 0.00 0.00 0.00 2.92
2992 3131 4.871513 TGCTATGGTCACTGATTATCGTC 58.128 43.478 0.00 0.00 0.00 4.20
3001 3140 7.094592 TGGTCACTGATTATCGTCTATCTGATC 60.095 40.741 0.00 0.00 0.00 2.92
3151 3290 0.110823 GCGATCGTGTTTGTGTGGAC 60.111 55.000 17.81 0.00 0.00 4.02
3360 3501 3.813529 GGAATGTTCCTTGTTCACTCG 57.186 47.619 4.53 0.00 44.11 4.18
3363 3504 2.526304 TGTTCCTTGTTCACTCGGAG 57.474 50.000 2.83 2.83 0.00 4.63
3478 3619 2.352960 GCATTACAGCAGGCTTCACTAC 59.647 50.000 0.00 0.00 0.00 2.73
3532 3673 2.172505 TGCATATGTTACAGTCCCTGGG 59.827 50.000 6.33 6.33 35.51 4.45
3580 3721 5.036117 TGCAATCAGGTAGGGAAGTAATC 57.964 43.478 0.00 0.00 0.00 1.75
3619 3760 3.443976 GTTGTGGCGAACTTCAATTGTT 58.556 40.909 5.13 0.00 0.00 2.83
3709 3850 5.263599 TCCTTTTGATGGTATCTGCACATT 58.736 37.500 0.00 0.00 0.00 2.71
3764 3905 2.982488 ACAGGAGAACTCTGGAAATGGT 59.018 45.455 1.86 0.00 36.62 3.55
3809 3950 3.329386 TGCAGAGACAGTTGCACTTATC 58.671 45.455 0.00 0.00 44.72 1.75
3834 3975 1.003233 CTGACAGAGGTAAACCCACCC 59.997 57.143 0.00 0.00 39.62 4.61
3842 3983 1.004979 GGTAAACCCACCCAGCACATA 59.995 52.381 0.00 0.00 31.91 2.29
3858 3999 7.308408 CCCAGCACATATTCTGAAGATAATGTG 60.308 40.741 21.33 21.33 43.27 3.21
3928 4069 6.951256 TCTATTTCTGAATGACTTGTGTCG 57.049 37.500 0.00 0.00 45.70 4.35
3948 4089 7.446013 TGTGTCGGTAGATTAACAGGAAATTTT 59.554 33.333 0.00 0.00 0.00 1.82
4037 4179 4.248859 CTGGGAATTCACAGTACAGAGTG 58.751 47.826 26.65 1.61 42.29 3.51
4064 4206 7.451255 TCACCAGAAAATGAAACCTCATACAAT 59.549 33.333 0.00 0.00 41.66 2.71
4078 4220 6.947733 ACCTCATACAATTCTGGAAATCAACA 59.052 34.615 0.00 0.00 0.00 3.33
4084 4226 9.911788 ATACAATTCTGGAAATCAACAGAGTAT 57.088 29.630 0.00 0.00 43.84 2.12
4085 4227 8.048534 ACAATTCTGGAAATCAACAGAGTATG 57.951 34.615 0.00 0.00 43.84 2.39
4094 4236 7.327032 GGAAATCAACAGAGTATGAAGTTTTGC 59.673 37.037 0.00 0.00 0.00 3.68
4141 4283 4.854587 GGGGGCATTGTACAACCA 57.145 55.556 11.22 0.00 0.00 3.67
4142 4284 2.578683 GGGGGCATTGTACAACCAG 58.421 57.895 11.22 5.34 0.00 4.00
4143 4285 0.251608 GGGGGCATTGTACAACCAGT 60.252 55.000 11.22 0.00 0.00 4.00
4144 4286 0.887933 GGGGCATTGTACAACCAGTG 59.112 55.000 11.22 6.50 0.00 3.66
4145 4287 0.243636 GGGCATTGTACAACCAGTGC 59.756 55.000 19.14 19.14 44.58 4.40
4146 4288 0.958091 GGCATTGTACAACCAGTGCA 59.042 50.000 25.33 0.00 46.41 4.57
4152 4294 4.727507 TTGTACAACCAGTGCAATGTTT 57.272 36.364 13.82 1.46 45.95 2.83
4153 4295 4.727507 TGTACAACCAGTGCAATGTTTT 57.272 36.364 13.82 2.88 40.01 2.43
4154 4296 5.078411 TGTACAACCAGTGCAATGTTTTT 57.922 34.783 13.82 0.42 40.01 1.94
4155 4297 4.867047 TGTACAACCAGTGCAATGTTTTTG 59.133 37.500 13.82 14.53 40.01 2.44
4156 4298 2.677337 ACAACCAGTGCAATGTTTTTGC 59.323 40.909 13.82 3.44 45.11 3.68
4157 4299 2.937799 CAACCAGTGCAATGTTTTTGCT 59.062 40.909 13.82 0.00 45.13 3.91
4158 4300 2.553086 ACCAGTGCAATGTTTTTGCTG 58.447 42.857 13.82 0.71 45.13 4.41
4159 4301 2.168106 ACCAGTGCAATGTTTTTGCTGA 59.832 40.909 13.82 0.00 45.13 4.26
4160 4302 2.798283 CCAGTGCAATGTTTTTGCTGAG 59.202 45.455 13.82 1.91 45.13 3.35
4161 4303 3.450578 CAGTGCAATGTTTTTGCTGAGT 58.549 40.909 5.87 0.00 45.13 3.41
4162 4304 3.866910 CAGTGCAATGTTTTTGCTGAGTT 59.133 39.130 5.87 0.00 45.13 3.01
4163 4305 4.026310 CAGTGCAATGTTTTTGCTGAGTTC 60.026 41.667 5.87 0.00 45.13 3.01
4164 4306 4.114794 GTGCAATGTTTTTGCTGAGTTCT 58.885 39.130 11.18 0.00 45.13 3.01
4255 4426 2.967201 TCTTGACCAACTTACTCCCGAA 59.033 45.455 0.00 0.00 0.00 4.30
4407 4578 6.089551 AGTTTATTGTCGAGAAATGAGACACG 59.910 38.462 0.00 0.00 43.54 4.49
4413 4584 2.594654 CGAGAAATGAGACACGCTGTAC 59.405 50.000 0.00 0.00 0.00 2.90
4571 4745 8.377799 AGGCTCATTTTTCCATTTTATCTTGTT 58.622 29.630 0.00 0.00 0.00 2.83
4612 4786 2.255770 AGGGGAGTCCTTTCCAGTAG 57.744 55.000 9.58 0.00 45.47 2.57
4622 4799 9.102453 GGAGTCCTTTCCAGTAGGTATATATTT 57.898 37.037 0.41 0.00 37.20 1.40
4648 4825 3.313526 CCTATCTGGACAAAGGAATTGCG 59.686 47.826 0.00 0.00 43.13 4.85
4676 4853 3.937079 CTGAGAAATATGCAGCTGTGACA 59.063 43.478 16.64 5.17 0.00 3.58
4677 4854 4.325972 TGAGAAATATGCAGCTGTGACAA 58.674 39.130 16.64 0.00 0.00 3.18
4678 4855 4.761227 TGAGAAATATGCAGCTGTGACAAA 59.239 37.500 16.64 0.00 0.00 2.83
4712 4889 7.071698 ACATCAAGACCCTATCTGATAACATGT 59.928 37.037 0.00 0.00 37.88 3.21
4715 4892 7.125659 TCAAGACCCTATCTGATAACATGTCAA 59.874 37.037 0.00 0.00 37.88 3.18
4752 4929 1.444836 TTGGGCGACGAATTTGGTAG 58.555 50.000 0.00 0.00 0.00 3.18
4755 4932 1.712018 GGCGACGAATTTGGTAGCCC 61.712 60.000 20.03 6.82 46.52 5.19
4759 4936 2.639065 GACGAATTTGGTAGCCCATGA 58.361 47.619 0.00 0.00 41.49 3.07
4760 4937 2.354821 GACGAATTTGGTAGCCCATGAC 59.645 50.000 0.00 0.00 41.49 3.06
4807 5015 4.001652 CAGTTTCTGTCATGTCTGCAGAT 58.998 43.478 21.47 0.83 36.28 2.90
4820 5028 0.546122 TGCAGATGATAAACCCGGCT 59.454 50.000 0.00 0.00 0.00 5.52
4827 5035 3.728279 ATAAACCCGGCTCCGCGAC 62.728 63.158 8.23 0.00 38.24 5.19
4835 5043 4.736896 GCTCCGCGACGAGGGTTT 62.737 66.667 17.93 0.00 0.00 3.27
4837 5045 1.226603 CTCCGCGACGAGGGTTTAG 60.227 63.158 17.93 3.73 0.00 1.85
4838 5046 2.202703 CCGCGACGAGGGTTTAGG 60.203 66.667 8.23 0.00 0.00 2.69
4839 5047 2.202703 CGCGACGAGGGTTTAGGG 60.203 66.667 0.00 0.00 0.00 3.53
4840 5048 2.976356 GCGACGAGGGTTTAGGGT 59.024 61.111 0.00 0.00 0.00 4.34
4841 5049 1.294459 GCGACGAGGGTTTAGGGTT 59.706 57.895 0.00 0.00 0.00 4.11
4842 5050 0.321034 GCGACGAGGGTTTAGGGTTT 60.321 55.000 0.00 0.00 0.00 3.27
4846 5066 2.833943 GACGAGGGTTTAGGGTTTAGGA 59.166 50.000 0.00 0.00 0.00 2.94
4880 5100 7.381948 TCAGATTTGGTGAAAAACAATTCATCG 59.618 33.333 0.00 0.00 42.20 3.84
4910 5130 2.124903 GTAGTCATATTCCGTGCCACG 58.875 52.381 10.95 10.95 42.11 4.94
4947 5167 5.277974 GCAAGAAGCATCACTAGAAACAACA 60.278 40.000 0.00 0.00 44.79 3.33
4960 5180 5.095691 AGAAACAACAATTACACAGCTCG 57.904 39.130 0.00 0.00 0.00 5.03
5040 5260 1.847890 GCACTTGCGCGGTCCTAAAA 61.848 55.000 8.83 0.00 0.00 1.52
5127 5347 2.833957 GGGACGGTGTTGGAGGTT 59.166 61.111 0.00 0.00 0.00 3.50
5214 5434 0.257328 AGACCTCTGAGATCTGCGGA 59.743 55.000 0.00 0.00 0.00 5.54
5334 5554 2.432456 TACAGCCTGCGCTTGTCG 60.432 61.111 9.73 0.00 45.55 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.415672 AAGGAACGCACCAAGAGGGA 61.416 55.000 1.50 0.00 41.15 4.20
1 2 0.323629 TAAGGAACGCACCAAGAGGG 59.676 55.000 1.50 0.00 44.81 4.30
2 3 1.270625 TGTAAGGAACGCACCAAGAGG 60.271 52.381 1.50 0.00 42.21 3.69
3 4 2.163818 TGTAAGGAACGCACCAAGAG 57.836 50.000 1.50 0.00 0.00 2.85
4 5 2.623878 TTGTAAGGAACGCACCAAGA 57.376 45.000 1.50 0.00 0.00 3.02
5 6 3.915437 ATTTGTAAGGAACGCACCAAG 57.085 42.857 1.50 0.00 0.00 3.61
6 7 5.473846 TCATAATTTGTAAGGAACGCACCAA 59.526 36.000 1.50 0.00 0.00 3.67
7 8 5.004448 TCATAATTTGTAAGGAACGCACCA 58.996 37.500 1.50 0.00 0.00 4.17
8 9 5.448632 CCTCATAATTTGTAAGGAACGCACC 60.449 44.000 0.00 0.00 0.00 5.01
9 10 5.448632 CCCTCATAATTTGTAAGGAACGCAC 60.449 44.000 0.00 0.00 0.00 5.34
10 11 4.638421 CCCTCATAATTTGTAAGGAACGCA 59.362 41.667 0.00 0.00 0.00 5.24
11 12 4.879545 TCCCTCATAATTTGTAAGGAACGC 59.120 41.667 0.00 0.00 0.00 4.84
12 13 6.995511 TTCCCTCATAATTTGTAAGGAACG 57.004 37.500 0.00 0.00 29.76 3.95
13 14 9.586435 CATTTTCCCTCATAATTTGTAAGGAAC 57.414 33.333 0.00 0.00 32.45 3.62
14 15 8.257306 GCATTTTCCCTCATAATTTGTAAGGAA 58.743 33.333 0.00 0.00 31.53 3.36
15 16 7.398618 TGCATTTTCCCTCATAATTTGTAAGGA 59.601 33.333 0.00 0.00 0.00 3.36
16 17 7.555087 TGCATTTTCCCTCATAATTTGTAAGG 58.445 34.615 0.00 0.00 0.00 2.69
17 18 9.603921 AATGCATTTTCCCTCATAATTTGTAAG 57.396 29.630 5.99 0.00 0.00 2.34
20 21 8.980596 TCTAATGCATTTTCCCTCATAATTTGT 58.019 29.630 18.75 0.00 0.00 2.83
21 22 9.820725 TTCTAATGCATTTTCCCTCATAATTTG 57.179 29.630 18.75 0.00 0.00 2.32
28 29 8.641541 GGAATAATTCTAATGCATTTTCCCTCA 58.358 33.333 18.75 0.00 0.00 3.86
29 30 8.641541 TGGAATAATTCTAATGCATTTTCCCTC 58.358 33.333 24.11 10.93 0.00 4.30
30 31 8.551682 TGGAATAATTCTAATGCATTTTCCCT 57.448 30.769 24.11 9.96 0.00 4.20
31 32 9.612066 TTTGGAATAATTCTAATGCATTTTCCC 57.388 29.630 24.11 13.43 29.97 3.97
36 37 9.669887 TGCTTTTTGGAATAATTCTAATGCATT 57.330 25.926 17.56 17.56 29.97 3.56
37 38 9.841295 ATGCTTTTTGGAATAATTCTAATGCAT 57.159 25.926 0.00 0.00 35.01 3.96
38 39 9.669887 AATGCTTTTTGGAATAATTCTAATGCA 57.330 25.926 0.00 0.00 34.21 3.96
90 91 9.590451 CCATTTTGCATCATATTTTCTTACTGT 57.410 29.630 0.00 0.00 0.00 3.55
91 92 9.806203 TCCATTTTGCATCATATTTTCTTACTG 57.194 29.630 0.00 0.00 0.00 2.74
92 93 9.807649 GTCCATTTTGCATCATATTTTCTTACT 57.192 29.630 0.00 0.00 0.00 2.24
93 94 8.745837 CGTCCATTTTGCATCATATTTTCTTAC 58.254 33.333 0.00 0.00 0.00 2.34
94 95 7.434897 GCGTCCATTTTGCATCATATTTTCTTA 59.565 33.333 0.00 0.00 0.00 2.10
95 96 6.256321 GCGTCCATTTTGCATCATATTTTCTT 59.744 34.615 0.00 0.00 0.00 2.52
96 97 5.750067 GCGTCCATTTTGCATCATATTTTCT 59.250 36.000 0.00 0.00 0.00 2.52
97 98 5.331756 CGCGTCCATTTTGCATCATATTTTC 60.332 40.000 0.00 0.00 0.00 2.29
98 99 4.503734 CGCGTCCATTTTGCATCATATTTT 59.496 37.500 0.00 0.00 0.00 1.82
99 100 4.043750 CGCGTCCATTTTGCATCATATTT 58.956 39.130 0.00 0.00 0.00 1.40
100 101 3.066621 ACGCGTCCATTTTGCATCATATT 59.933 39.130 5.58 0.00 0.00 1.28
101 102 2.618241 ACGCGTCCATTTTGCATCATAT 59.382 40.909 5.58 0.00 0.00 1.78
102 103 2.013400 ACGCGTCCATTTTGCATCATA 58.987 42.857 5.58 0.00 0.00 2.15
103 104 0.810648 ACGCGTCCATTTTGCATCAT 59.189 45.000 5.58 0.00 0.00 2.45
104 105 0.167908 GACGCGTCCATTTTGCATCA 59.832 50.000 28.61 0.00 0.00 3.07
105 106 0.167908 TGACGCGTCCATTTTGCATC 59.832 50.000 34.34 8.01 0.00 3.91
106 107 0.595588 TTGACGCGTCCATTTTGCAT 59.404 45.000 34.34 0.00 0.00 3.96
107 108 0.382158 TTTGACGCGTCCATTTTGCA 59.618 45.000 34.34 12.86 0.00 4.08
108 109 1.052287 CTTTGACGCGTCCATTTTGC 58.948 50.000 34.34 10.12 0.00 3.68
109 110 1.052287 GCTTTGACGCGTCCATTTTG 58.948 50.000 34.34 19.05 0.00 2.44
110 111 0.039527 GGCTTTGACGCGTCCATTTT 60.040 50.000 34.34 0.00 0.00 1.82
111 112 1.579429 GGCTTTGACGCGTCCATTT 59.421 52.632 34.34 0.00 0.00 2.32
112 113 2.332654 GGGCTTTGACGCGTCCATT 61.333 57.895 34.34 0.02 0.00 3.16
113 114 2.746277 GGGCTTTGACGCGTCCAT 60.746 61.111 34.34 0.49 0.00 3.41
115 116 2.862674 TATGGGGCTTTGACGCGTCC 62.863 60.000 34.34 20.34 0.00 4.79
116 117 1.429148 CTATGGGGCTTTGACGCGTC 61.429 60.000 31.66 31.66 0.00 5.19
117 118 1.449601 CTATGGGGCTTTGACGCGT 60.450 57.895 13.85 13.85 0.00 6.01
118 119 1.429148 GACTATGGGGCTTTGACGCG 61.429 60.000 3.53 3.53 0.00 6.01
119 120 0.392461 TGACTATGGGGCTTTGACGC 60.392 55.000 0.00 0.00 0.00 5.19
120 121 2.213499 GATGACTATGGGGCTTTGACG 58.787 52.381 0.00 0.00 0.00 4.35
121 122 3.281727 TGATGACTATGGGGCTTTGAC 57.718 47.619 0.00 0.00 0.00 3.18
122 123 3.459227 TCATGATGACTATGGGGCTTTGA 59.541 43.478 0.00 0.00 0.00 2.69
123 124 3.824133 TCATGATGACTATGGGGCTTTG 58.176 45.455 0.00 0.00 0.00 2.77
124 125 4.524802 TTCATGATGACTATGGGGCTTT 57.475 40.909 0.00 0.00 0.00 3.51
165 167 1.971357 GACTCCTTTGACTGAGGTCCA 59.029 52.381 0.00 0.00 41.47 4.02
205 207 1.002502 GCGGAGGCTTTAGGTGGTT 60.003 57.895 0.00 0.00 35.83 3.67
225 227 2.159043 TGAAGGCATCGTCTCCTTGATC 60.159 50.000 8.98 0.00 42.37 2.92
267 269 4.225267 ACAGGGACTTAATTGATCGAGGTT 59.775 41.667 0.00 0.00 34.60 3.50
274 276 5.779241 TCCAAGACAGGGACTTAATTGAT 57.221 39.130 0.00 0.00 34.60 2.57
299 301 1.228398 TTGCTTGGCGACATCCCAA 60.228 52.632 0.00 0.00 42.32 4.12
346 348 1.747325 TTGCTTGGTGGAGCTTTGGC 61.747 55.000 0.00 0.00 43.11 4.52
349 351 1.683385 GAAGTTGCTTGGTGGAGCTTT 59.317 47.619 0.00 0.00 43.11 3.51
362 364 0.598065 ACTCCATTTGCCGAAGTTGC 59.402 50.000 0.00 0.00 0.00 4.17
370 372 3.064545 CGAAGATGAAGACTCCATTTGCC 59.935 47.826 0.00 0.00 0.00 4.52
381 389 6.650390 TGTGATTTTGATGACGAAGATGAAGA 59.350 34.615 0.00 0.00 0.00 2.87
382 390 6.740002 GTGTGATTTTGATGACGAAGATGAAG 59.260 38.462 0.00 0.00 0.00 3.02
383 391 6.348458 GGTGTGATTTTGATGACGAAGATGAA 60.348 38.462 0.00 0.00 0.00 2.57
384 392 5.122239 GGTGTGATTTTGATGACGAAGATGA 59.878 40.000 0.00 0.00 0.00 2.92
385 393 5.106594 TGGTGTGATTTTGATGACGAAGATG 60.107 40.000 0.00 0.00 0.00 2.90
386 394 5.003160 TGGTGTGATTTTGATGACGAAGAT 58.997 37.500 0.00 0.00 0.00 2.40
390 398 4.133820 ACTTGGTGTGATTTTGATGACGA 58.866 39.130 0.00 0.00 0.00 4.20
403 411 1.302832 GAGGAGGCCACTTGGTGTG 60.303 63.158 5.01 0.00 45.80 3.82
410 418 3.615811 TCCTGGGAGGAGGCCACT 61.616 66.667 5.01 1.49 40.06 4.00
423 431 2.272918 GACGAAGGCGGAGTCTCCTG 62.273 65.000 17.00 11.17 40.46 3.86
450 458 2.981302 CTGGAGTCCGATGTGGCA 59.019 61.111 4.30 0.00 37.80 4.92
494 502 0.179129 CATGTCTTTGGCGGCATTCC 60.179 55.000 14.32 1.77 0.00 3.01
587 596 1.827399 TTCCCCAAGAGACGTGGAGC 61.827 60.000 0.00 0.00 38.54 4.70
588 597 0.247736 CTTCCCCAAGAGACGTGGAG 59.752 60.000 0.00 0.00 38.54 3.86
601 610 0.175989 CGACCTCTAAGTGCTTCCCC 59.824 60.000 0.00 0.00 0.00 4.81
608 617 1.135257 CCTGCTGACGACCTCTAAGTG 60.135 57.143 0.00 0.00 0.00 3.16
611 620 1.605058 GGCCTGCTGACGACCTCTAA 61.605 60.000 0.00 0.00 0.00 2.10
612 621 2.052690 GGCCTGCTGACGACCTCTA 61.053 63.158 0.00 0.00 0.00 2.43
614 623 3.240134 TTGGCCTGCTGACGACCTC 62.240 63.158 3.32 0.00 0.00 3.85
616 625 2.743928 CTTGGCCTGCTGACGACC 60.744 66.667 3.32 0.00 0.00 4.79
630 639 5.585390 GTTGATTGGATGCTAATGACCTTG 58.415 41.667 0.00 0.00 0.00 3.61
639 648 2.115427 TCCTCCGTTGATTGGATGCTA 58.885 47.619 0.00 0.00 34.32 3.49
676 685 0.734889 GCTGTGTATGGACATGGCAC 59.265 55.000 0.00 11.98 38.04 5.01
677 686 0.394216 GGCTGTGTATGGACATGGCA 60.394 55.000 0.00 0.00 38.04 4.92
694 703 1.149148 GACAACGTTCAAGAGGAGGC 58.851 55.000 0.00 0.00 0.00 4.70
705 714 4.631813 GCAGAGGATCAAATAGACAACGTT 59.368 41.667 0.00 0.00 37.82 3.99
710 719 4.342092 TCATCGCAGAGGATCAAATAGACA 59.658 41.667 0.00 0.00 44.67 3.41
728 738 1.238439 AACTGCCACTTGGTTCATCG 58.762 50.000 0.00 0.00 37.57 3.84
732 742 3.272766 GCAAACTGCCACTTGGTTC 57.727 52.632 0.00 0.00 37.42 3.62
757 767 2.203877 AGGGGTTGAGCGGTGGTA 60.204 61.111 0.00 0.00 0.00 3.25
761 771 2.526873 ACTGAGGGGTTGAGCGGT 60.527 61.111 0.00 0.00 0.00 5.68
776 786 0.736053 TTTGCCACGCTTTTTCGACT 59.264 45.000 0.00 0.00 0.00 4.18
778 788 1.402259 TCTTTTGCCACGCTTTTTCGA 59.598 42.857 0.00 0.00 0.00 3.71
826 836 1.732259 CCACGCTCACTCATTTGTACC 59.268 52.381 0.00 0.00 0.00 3.34
834 844 1.939934 CTTTTGTTCCACGCTCACTCA 59.060 47.619 0.00 0.00 0.00 3.41
846 856 2.678336 CCATACCTCGAGCCTTTTGTTC 59.322 50.000 6.99 0.00 0.00 3.18
910 941 5.495640 TGGCAAAAATAGGGGCAAAAATAG 58.504 37.500 0.00 0.00 33.89 1.73
913 944 3.864789 TGGCAAAAATAGGGGCAAAAA 57.135 38.095 0.00 0.00 33.89 1.94
919 954 1.202330 TGGCATGGCAAAAATAGGGG 58.798 50.000 21.13 0.00 0.00 4.79
937 972 1.395826 TTTCCACGGGGGCAACTTTG 61.396 55.000 2.42 0.00 36.21 2.77
941 976 1.182385 TCATTTTCCACGGGGGCAAC 61.182 55.000 2.42 0.00 36.21 4.17
947 982 4.423732 GACATTTGATCATTTTCCACGGG 58.576 43.478 0.00 0.00 0.00 5.28
950 985 5.170748 GTGGGACATTTGATCATTTTCCAC 58.829 41.667 13.67 13.67 44.52 4.02
954 989 3.519107 GGGGTGGGACATTTGATCATTTT 59.481 43.478 0.00 0.00 44.52 1.82
976 1098 0.382515 TTTCTTTGGTGGGCGTTTCG 59.617 50.000 0.00 0.00 0.00 3.46
1005 1127 0.325203 AGGAAGAGGAGCAGGAGACC 60.325 60.000 0.00 0.00 0.00 3.85
1055 1177 1.620819 CGAGGTGGGAGATATGGAAGG 59.379 57.143 0.00 0.00 0.00 3.46
1077 1199 0.688487 TCGTACCTGTTCTTTGGGGG 59.312 55.000 0.00 0.00 0.00 5.40
1154 1279 2.310647 GGGAAACAGATTGGGGGAACTA 59.689 50.000 0.00 0.00 0.00 2.24
1190 1323 6.411376 TGACCCCAATTATGTTGTGTACTAG 58.589 40.000 0.00 0.00 0.00 2.57
1229 1363 1.396301 GAATCTGAAAGCCTGACAGCG 59.604 52.381 0.00 0.00 38.01 5.18
1233 1367 2.413371 GCAACGAATCTGAAAGCCTGAC 60.413 50.000 0.00 0.00 0.00 3.51
1308 1446 5.401674 GGAACGGCTAATACTAGTGAAATCG 59.598 44.000 5.39 5.35 0.00 3.34
1401 1540 7.424803 CCAAATCAGGTTCAAATATCGCAATA 58.575 34.615 0.00 0.00 0.00 1.90
1422 1561 5.018149 TGATGCTGAATCAAGAATCCCAAA 58.982 37.500 0.00 0.00 42.49 3.28
1437 1576 2.437180 CAAGCGGGCTGATGCTGA 60.437 61.111 0.00 0.00 41.46 4.26
1460 1599 3.309138 CAGAGCACATCTTGATACACTGC 59.691 47.826 0.00 0.00 35.47 4.40
1553 1692 1.987855 CCAACCCCTCTCTACGGCA 60.988 63.158 0.00 0.00 0.00 5.69
1635 1774 1.065126 AGTATCCCTGCTTGGAACAGC 60.065 52.381 0.00 0.00 42.39 4.40
1672 1811 4.080582 TGGGTATCAAAGACATTCGTCCAT 60.081 41.667 0.00 0.00 43.73 3.41
1674 1813 3.869065 TGGGTATCAAAGACATTCGTCC 58.131 45.455 0.00 0.00 43.73 4.79
1702 1841 0.814410 GCTTAGCGGTTAGGGCCTTC 60.814 60.000 13.45 5.52 0.00 3.46
1704 1843 2.743179 GGCTTAGCGGTTAGGGCCT 61.743 63.158 12.58 12.58 36.96 5.19
1706 1845 0.465642 ATTGGCTTAGCGGTTAGGGC 60.466 55.000 2.53 0.91 34.88 5.19
1708 1847 5.767816 ATTTAATTGGCTTAGCGGTTAGG 57.232 39.130 2.53 0.00 0.00 2.69
1709 1848 7.254852 TCAAATTTAATTGGCTTAGCGGTTAG 58.745 34.615 0.00 0.00 0.00 2.34
1710 1849 7.094118 ACTCAAATTTAATTGGCTTAGCGGTTA 60.094 33.333 0.00 0.00 0.00 2.85
1711 1850 6.031751 TCAAATTTAATTGGCTTAGCGGTT 57.968 33.333 0.00 0.00 0.00 4.44
1712 1851 5.185056 ACTCAAATTTAATTGGCTTAGCGGT 59.815 36.000 0.00 0.00 0.00 5.68
1713 1852 5.516339 CACTCAAATTTAATTGGCTTAGCGG 59.484 40.000 0.00 0.00 0.00 5.52
1714 1853 6.033831 CACACTCAAATTTAATTGGCTTAGCG 59.966 38.462 0.00 0.00 0.00 4.26
1715 1854 6.868339 ACACACTCAAATTTAATTGGCTTAGC 59.132 34.615 0.00 0.00 0.00 3.09
1720 1859 6.144402 CACAGACACACTCAAATTTAATTGGC 59.856 38.462 0.00 0.00 0.00 4.52
1733 1872 0.933097 CAGCACACACAGACACACTC 59.067 55.000 0.00 0.00 0.00 3.51
1734 1873 1.091771 GCAGCACACACAGACACACT 61.092 55.000 0.00 0.00 0.00 3.55
1737 1876 1.645455 CTGCAGCACACACAGACAC 59.355 57.895 0.00 0.00 33.10 3.67
1738 1877 2.182181 GCTGCAGCACACACAGACA 61.182 57.895 33.36 0.00 41.59 3.41
1739 1878 2.635899 GCTGCAGCACACACAGAC 59.364 61.111 33.36 0.00 41.59 3.51
1755 1894 1.354506 GATGGATGCGAGCAGTTGC 59.645 57.895 3.58 0.00 42.49 4.17
1756 1895 0.463295 AGGATGGATGCGAGCAGTTG 60.463 55.000 3.58 0.00 0.00 3.16
1757 1896 0.179062 GAGGATGGATGCGAGCAGTT 60.179 55.000 3.58 0.00 0.00 3.16
1758 1897 1.047596 AGAGGATGGATGCGAGCAGT 61.048 55.000 3.58 0.00 0.00 4.40
1759 1898 0.319727 GAGAGGATGGATGCGAGCAG 60.320 60.000 3.58 0.00 0.00 4.24
1760 1899 0.758310 AGAGAGGATGGATGCGAGCA 60.758 55.000 0.00 0.00 0.00 4.26
1761 1900 0.392336 AAGAGAGGATGGATGCGAGC 59.608 55.000 0.00 0.00 0.00 5.03
1762 1901 3.860378 GCTTAAGAGAGGATGGATGCGAG 60.860 52.174 6.67 0.00 0.00 5.03
1763 1902 2.036475 GCTTAAGAGAGGATGGATGCGA 59.964 50.000 6.67 0.00 0.00 5.10
1764 1903 2.411904 GCTTAAGAGAGGATGGATGCG 58.588 52.381 6.67 0.00 0.00 4.73
1765 1904 2.105477 TGGCTTAAGAGAGGATGGATGC 59.895 50.000 6.67 0.00 0.00 3.91
1766 1905 4.428294 TTGGCTTAAGAGAGGATGGATG 57.572 45.455 6.67 0.00 0.00 3.51
1767 1906 5.659849 AATTGGCTTAAGAGAGGATGGAT 57.340 39.130 6.67 0.00 0.00 3.41
1768 1907 6.575244 TTAATTGGCTTAAGAGAGGATGGA 57.425 37.500 6.67 0.00 0.00 3.41
1769 1908 7.830099 ATTTAATTGGCTTAAGAGAGGATGG 57.170 36.000 6.67 0.00 31.12 3.51
1770 1909 9.525409 CAAATTTAATTGGCTTAAGAGAGGATG 57.475 33.333 6.67 0.00 31.12 3.51
1771 1910 9.479549 TCAAATTTAATTGGCTTAAGAGAGGAT 57.520 29.630 6.67 0.00 31.12 3.24
1772 1911 8.877864 TCAAATTTAATTGGCTTAAGAGAGGA 57.122 30.769 6.67 0.00 31.12 3.71
1773 1912 8.743714 ACTCAAATTTAATTGGCTTAAGAGAGG 58.256 33.333 6.67 0.00 31.12 3.69
1774 1913 9.565213 CACTCAAATTTAATTGGCTTAAGAGAG 57.435 33.333 6.67 0.00 31.12 3.20
1775 1914 9.077885 ACACTCAAATTTAATTGGCTTAAGAGA 57.922 29.630 6.67 0.00 31.12 3.10
1776 1915 9.132521 CACACTCAAATTTAATTGGCTTAAGAG 57.867 33.333 6.67 0.00 31.12 2.85
1777 1916 8.637986 ACACACTCAAATTTAATTGGCTTAAGA 58.362 29.630 6.67 0.00 31.12 2.10
1778 1917 8.816640 ACACACTCAAATTTAATTGGCTTAAG 57.183 30.769 0.00 0.00 31.12 1.85
1779 1918 8.637986 AGACACACTCAAATTTAATTGGCTTAA 58.362 29.630 0.00 0.00 0.00 1.85
1780 1919 8.081633 CAGACACACTCAAATTTAATTGGCTTA 58.918 33.333 0.00 0.00 0.00 3.09
1781 1920 6.925165 CAGACACACTCAAATTTAATTGGCTT 59.075 34.615 0.00 0.00 0.00 4.35
1782 1921 6.040842 ACAGACACACTCAAATTTAATTGGCT 59.959 34.615 0.00 0.00 0.00 4.75
1783 1922 6.144402 CACAGACACACTCAAATTTAATTGGC 59.856 38.462 0.00 0.00 0.00 4.52
1784 1923 7.167968 CACACAGACACACTCAAATTTAATTGG 59.832 37.037 0.00 0.00 0.00 3.16
1785 1924 7.701924 ACACACAGACACACTCAAATTTAATTG 59.298 33.333 0.00 0.00 0.00 2.32
1786 1925 7.701924 CACACACAGACACACTCAAATTTAATT 59.298 33.333 0.00 0.00 0.00 1.40
1787 1926 7.195646 CACACACAGACACACTCAAATTTAAT 58.804 34.615 0.00 0.00 0.00 1.40
1788 1927 6.550843 CACACACAGACACACTCAAATTTAA 58.449 36.000 0.00 0.00 0.00 1.52
1789 1928 5.448496 GCACACACAGACACACTCAAATTTA 60.448 40.000 0.00 0.00 0.00 1.40
1790 1929 4.675146 GCACACACAGACACACTCAAATTT 60.675 41.667 0.00 0.00 0.00 1.82
1791 1930 3.181497 GCACACACAGACACACTCAAATT 60.181 43.478 0.00 0.00 0.00 1.82
1792 1931 2.355756 GCACACACAGACACACTCAAAT 59.644 45.455 0.00 0.00 0.00 2.32
1793 1932 1.737236 GCACACACAGACACACTCAAA 59.263 47.619 0.00 0.00 0.00 2.69
1794 1933 1.066215 AGCACACACAGACACACTCAA 60.066 47.619 0.00 0.00 0.00 3.02
1795 1934 0.536724 AGCACACACAGACACACTCA 59.463 50.000 0.00 0.00 0.00 3.41
1796 1935 0.933097 CAGCACACACAGACACACTC 59.067 55.000 0.00 0.00 0.00 3.51
1797 1936 1.091771 GCAGCACACACAGACACACT 61.092 55.000 0.00 0.00 0.00 3.55
1798 1937 1.353103 GCAGCACACACAGACACAC 59.647 57.895 0.00 0.00 0.00 3.82
1799 1938 1.078567 TGCAGCACACACAGACACA 60.079 52.632 0.00 0.00 0.00 3.72
1800 1939 1.645455 CTGCAGCACACACAGACAC 59.355 57.895 0.00 0.00 33.10 3.67
1801 1940 2.182181 GCTGCAGCACACACAGACA 61.182 57.895 33.36 0.00 41.59 3.41
1802 1941 2.635899 GCTGCAGCACACACAGAC 59.364 61.111 33.36 0.00 41.59 3.51
1850 1989 0.940126 CATCGAAAATCTCCAGGCCG 59.060 55.000 0.00 0.00 0.00 6.13
1865 2004 1.463674 CCTTTTGGTTCCCCTCATCG 58.536 55.000 0.00 0.00 34.07 3.84
1914 2053 0.322456 TGTATGAGTTGCAGCCCACC 60.322 55.000 0.00 0.00 0.00 4.61
1970 2109 0.322456 CCTGCCAATCACCTCGGAAA 60.322 55.000 0.00 0.00 0.00 3.13
2094 2233 2.371841 TGGTTTATCTCACTGTGCCAGT 59.628 45.455 2.12 2.38 46.51 4.00
2096 2235 3.008923 TGATGGTTTATCTCACTGTGCCA 59.991 43.478 2.12 3.24 36.71 4.92
2170 2309 9.178758 GGGAGTTCTTGAAACACATAATAAGAT 57.821 33.333 0.00 0.00 0.00 2.40
2199 2338 5.987953 ACATATGCACACTCATCACAGATAC 59.012 40.000 1.58 0.00 0.00 2.24
2207 2346 6.653183 GTGTATTCACATATGCACACTCATC 58.347 40.000 1.58 0.00 43.37 2.92
2237 2376 9.113838 GAGGACACACAATTTCATAGACAATAT 57.886 33.333 0.00 0.00 0.00 1.28
2285 2424 6.183360 TGCAGAGTACTGTTTACAAGTTACCT 60.183 38.462 0.00 0.00 45.04 3.08
2305 2444 1.525077 GGTGACGTGGGTTTGCAGA 60.525 57.895 0.00 0.00 0.00 4.26
2318 2457 3.197983 AGTTAGTGCTTCCTATGGGTGAC 59.802 47.826 0.00 0.00 0.00 3.67
2328 2467 1.348036 AGGACACCAGTTAGTGCTTCC 59.652 52.381 0.00 0.00 41.67 3.46
2354 2493 5.534654 TGCTGGTATAACCTATGGAATTTGC 59.465 40.000 0.00 0.00 39.58 3.68
2408 2547 2.806434 ACAGCCAATACAATTCCTGCA 58.194 42.857 0.00 0.00 0.00 4.41
2416 2555 4.336993 AGTTTGTCGAAACAGCCAATACAA 59.663 37.500 3.01 0.00 43.51 2.41
2474 2613 4.333926 GCTGTTGTATGTCCAAATCTCTCC 59.666 45.833 0.00 0.00 0.00 3.71
2558 2697 6.289834 CCTGCAAAATGGGCATCATAAATTA 58.710 36.000 0.00 0.00 41.06 1.40
2673 2812 4.065789 CCCTAGACACACCAAAGAAGTTC 58.934 47.826 0.00 0.00 0.00 3.01
2708 2847 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2709 2848 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2710 2849 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2711 2850 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
2712 2851 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2713 2852 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2714 2853 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2715 2854 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2716 2855 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2717 2856 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2718 2857 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2719 2858 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2720 2859 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2721 2860 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
2722 2861 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
2723 2862 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
2724 2863 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
2725 2864 9.453572 TTTTATGCTTGATTCACTCACTTAGAT 57.546 29.630 0.00 0.00 32.17 1.98
2726 2865 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
2727 2866 8.939929 TCTTTTATGCTTGATTCACTCACTTAG 58.060 33.333 0.00 0.00 32.17 2.18
2728 2867 8.846943 TCTTTTATGCTTGATTCACTCACTTA 57.153 30.769 0.00 0.00 32.17 2.24
2729 2868 7.750229 TCTTTTATGCTTGATTCACTCACTT 57.250 32.000 0.00 0.00 32.17 3.16
2730 2869 7.750229 TTCTTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
2731 2870 8.801715 TTTTCTTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
2732 2871 9.467258 CTTTTTCTTTTATGCTTGATTCACTCA 57.533 29.630 0.00 0.00 0.00 3.41
2733 2872 9.683069 TCTTTTTCTTTTATGCTTGATTCACTC 57.317 29.630 0.00 0.00 0.00 3.51
2764 2903 9.442047 AGATTCGTGTGAATATTTTCTTTCTCT 57.558 29.630 0.00 0.00 44.79 3.10
2798 2937 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
2799 2938 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
2800 2939 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
2801 2940 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
2802 2941 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
2803 2942 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
2804 2943 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
2805 2944 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
2806 2945 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
2810 2949 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
2811 2950 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
2812 2951 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
2813 2952 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
2814 2953 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
2815 2954 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2823 2962 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
2824 2963 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
2850 2989 8.623310 TTTACTTGTTACAGTTTTGCTAAAGC 57.377 30.769 0.00 0.00 42.50 3.51
2852 2991 9.738832 GGATTTACTTGTTACAGTTTTGCTAAA 57.261 29.630 0.00 0.00 0.00 1.85
2853 2992 8.354426 GGGATTTACTTGTTACAGTTTTGCTAA 58.646 33.333 0.00 0.00 0.00 3.09
2854 2993 7.722285 AGGGATTTACTTGTTACAGTTTTGCTA 59.278 33.333 0.00 0.00 0.00 3.49
2855 2994 6.549736 AGGGATTTACTTGTTACAGTTTTGCT 59.450 34.615 0.00 0.00 0.00 3.91
2856 2995 6.640907 CAGGGATTTACTTGTTACAGTTTTGC 59.359 38.462 0.00 0.00 0.00 3.68
2857 2996 7.712797 ACAGGGATTTACTTGTTACAGTTTTG 58.287 34.615 0.00 0.00 0.00 2.44
2858 2997 7.778382 AGACAGGGATTTACTTGTTACAGTTTT 59.222 33.333 0.00 0.00 0.00 2.43
2859 2998 7.228706 CAGACAGGGATTTACTTGTTACAGTTT 59.771 37.037 0.00 0.00 0.00 2.66
2860 2999 6.710744 CAGACAGGGATTTACTTGTTACAGTT 59.289 38.462 0.00 0.00 0.00 3.16
2861 3000 6.231211 CAGACAGGGATTTACTTGTTACAGT 58.769 40.000 0.00 0.00 0.00 3.55
2862 3001 5.643777 CCAGACAGGGATTTACTTGTTACAG 59.356 44.000 0.00 0.00 0.00 2.74
2863 3002 5.556915 CCAGACAGGGATTTACTTGTTACA 58.443 41.667 0.00 0.00 0.00 2.41
2878 3017 3.571401 GGATCATTATTTGCCCAGACAGG 59.429 47.826 0.00 0.00 37.03 4.00
2879 3018 3.571401 GGGATCATTATTTGCCCAGACAG 59.429 47.826 0.00 0.00 38.68 3.51
2952 3091 7.124147 ACCATAGCAAAATACTGCCTTTTGTAT 59.876 33.333 13.44 9.05 43.73 2.29
2990 3129 6.967767 CGGGTAAATCATACGATCAGATAGAC 59.032 42.308 0.00 0.00 0.00 2.59
2992 3131 6.853720 ACGGGTAAATCATACGATCAGATAG 58.146 40.000 0.00 0.00 0.00 2.08
3001 3140 7.912383 AGAAATAACAACGGGTAAATCATACG 58.088 34.615 0.00 0.00 0.00 3.06
3028 3167 7.937700 ATAATCCTGAGTGATTAAAGGAGGA 57.062 36.000 7.23 0.00 41.98 3.71
3151 3290 2.029828 GGGTCGCATGATACTACAGAGG 60.030 54.545 0.00 0.00 0.00 3.69
3360 3501 2.262423 AGTTTGTCTCCAAGCACTCC 57.738 50.000 0.00 0.00 34.54 3.85
3363 3504 4.787598 CAATGTAGTTTGTCTCCAAGCAC 58.212 43.478 0.00 0.00 34.54 4.40
3478 3619 5.067283 CCCCTAAAAATGGAAAGGACATACG 59.933 44.000 0.00 0.00 0.00 3.06
3532 3673 3.622630 TGAGAGGTAGCTAGTCTTGTCC 58.377 50.000 6.94 0.00 0.00 4.02
3568 3709 6.288941 TGATCAACAACGATTACTTCCCTA 57.711 37.500 0.00 0.00 0.00 3.53
3580 3721 4.208873 CACAACCCATTTTGATCAACAACG 59.791 41.667 7.89 0.00 38.29 4.10
3619 3760 0.676466 ATTCAATCTTCACGCGGCCA 60.676 50.000 12.47 0.00 0.00 5.36
3680 3821 5.447818 GCAGATACCATCAAAAGGAAGAACG 60.448 44.000 0.00 0.00 0.00 3.95
3682 3823 5.415701 GTGCAGATACCATCAAAAGGAAGAA 59.584 40.000 0.00 0.00 0.00 2.52
3693 3834 5.761726 TGAGAATGAATGTGCAGATACCATC 59.238 40.000 10.64 0.35 0.00 3.51
3709 3850 6.366061 CAGTAACGTCATGAAACTGAGAATGA 59.634 38.462 17.49 0.00 39.93 2.57
3834 3975 7.228108 ACCACATTATCTTCAGAATATGTGCTG 59.772 37.037 19.56 13.63 42.34 4.41
3842 3983 9.965902 AGAACTTTACCACATTATCTTCAGAAT 57.034 29.630 0.00 0.00 0.00 2.40
3858 3999 8.887036 AATCACAAATCCAAAAGAACTTTACC 57.113 30.769 0.14 0.00 31.63 2.85
3923 4064 6.980051 AATTTCCTGTTAATCTACCGACAC 57.020 37.500 0.00 0.00 0.00 3.67
3928 4069 6.376299 ACCGGAAAATTTCCTGTTAATCTACC 59.624 38.462 21.04 0.00 43.63 3.18
3948 4089 0.035820 GTGTAGGCATTGGAACCGGA 60.036 55.000 9.46 0.00 0.00 5.14
3951 4092 2.200373 ACTGTGTAGGCATTGGAACC 57.800 50.000 0.00 0.00 0.00 3.62
4009 4151 2.586425 ACTGTGAATTCCCAGTGTTGG 58.414 47.619 20.88 0.00 40.30 3.77
4033 4175 4.580580 AGGTTTCATTTTCTGGTGACACTC 59.419 41.667 5.39 0.00 35.60 3.51
4037 4179 5.712152 ATGAGGTTTCATTTTCTGGTGAC 57.288 39.130 0.00 0.00 41.24 3.67
4064 4206 7.453393 ACTTCATACTCTGTTGATTTCCAGAA 58.547 34.615 0.00 0.00 37.27 3.02
4078 4220 7.719633 TCCTTTTACTGCAAAACTTCATACTCT 59.280 33.333 0.00 0.00 32.65 3.24
4084 4226 6.071051 AGGTTTCCTTTTACTGCAAAACTTCA 60.071 34.615 6.39 0.00 32.65 3.02
4085 4227 6.338146 AGGTTTCCTTTTACTGCAAAACTTC 58.662 36.000 6.39 0.00 32.65 3.01
4128 4270 2.791383 TTGCACTGGTTGTACAATGC 57.209 45.000 20.09 20.09 27.77 3.56
4130 4272 4.935352 AACATTGCACTGGTTGTACAAT 57.065 36.364 12.26 0.00 41.82 2.71
4131 4273 4.727507 AAACATTGCACTGGTTGTACAA 57.272 36.364 6.53 3.59 36.48 2.41
4132 4274 4.727507 AAAACATTGCACTGGTTGTACA 57.272 36.364 8.24 0.00 0.00 2.90
4133 4275 4.260172 GCAAAAACATTGCACTGGTTGTAC 60.260 41.667 8.24 0.00 44.34 2.90
4134 4276 3.868077 GCAAAAACATTGCACTGGTTGTA 59.132 39.130 8.24 0.00 44.34 2.41
4135 4277 2.677337 GCAAAAACATTGCACTGGTTGT 59.323 40.909 8.24 0.00 44.34 3.32
4136 4278 3.322230 GCAAAAACATTGCACTGGTTG 57.678 42.857 8.24 9.88 44.34 3.77
4144 4286 4.443394 CAGAGAACTCAGCAAAAACATTGC 59.557 41.667 5.06 5.06 45.22 3.56
4145 4287 5.824429 TCAGAGAACTCAGCAAAAACATTG 58.176 37.500 4.64 0.00 0.00 2.82
4146 4288 6.645790 ATCAGAGAACTCAGCAAAAACATT 57.354 33.333 4.64 0.00 0.00 2.71
4147 4289 6.939163 AGTATCAGAGAACTCAGCAAAAACAT 59.061 34.615 4.64 0.00 0.00 2.71
4148 4290 6.291377 AGTATCAGAGAACTCAGCAAAAACA 58.709 36.000 4.64 0.00 0.00 2.83
4149 4291 6.128418 GGAGTATCAGAGAACTCAGCAAAAAC 60.128 42.308 14.66 0.00 43.21 2.43
4150 4292 5.934625 GGAGTATCAGAGAACTCAGCAAAAA 59.065 40.000 14.66 0.00 43.21 1.94
4151 4293 5.482908 GGAGTATCAGAGAACTCAGCAAAA 58.517 41.667 14.66 0.00 43.21 2.44
4152 4294 4.081420 GGGAGTATCAGAGAACTCAGCAAA 60.081 45.833 14.66 0.00 43.21 3.68
4153 4295 3.449018 GGGAGTATCAGAGAACTCAGCAA 59.551 47.826 14.66 0.00 43.21 3.91
4154 4296 3.027412 GGGAGTATCAGAGAACTCAGCA 58.973 50.000 14.66 0.00 43.21 4.41
4155 4297 2.364002 GGGGAGTATCAGAGAACTCAGC 59.636 54.545 14.66 2.38 43.21 4.26
4156 4298 3.909732 AGGGGAGTATCAGAGAACTCAG 58.090 50.000 14.66 0.00 43.21 3.35
4157 4299 4.727332 TCTAGGGGAGTATCAGAGAACTCA 59.273 45.833 14.66 0.00 43.21 3.41
4158 4300 5.313280 TCTAGGGGAGTATCAGAGAACTC 57.687 47.826 7.04 7.04 41.16 3.01
4159 4301 5.941146 ATCTAGGGGAGTATCAGAGAACT 57.059 43.478 0.00 0.00 36.25 3.01
4160 4302 6.987403 AAATCTAGGGGAGTATCAGAGAAC 57.013 41.667 0.00 0.00 36.25 3.01
4161 4303 7.827787 ACTAAATCTAGGGGAGTATCAGAGAA 58.172 38.462 0.00 0.00 36.25 2.87
4162 4304 7.409408 ACTAAATCTAGGGGAGTATCAGAGA 57.591 40.000 0.00 0.00 36.25 3.10
4163 4305 9.589461 TTAACTAAATCTAGGGGAGTATCAGAG 57.411 37.037 0.00 0.00 36.25 3.35
4164 4306 9.589461 CTTAACTAAATCTAGGGGAGTATCAGA 57.411 37.037 0.00 0.00 36.25 3.27
4255 4426 7.508636 AGATCCTACATCAGACAATCATACAGT 59.491 37.037 0.00 0.00 0.00 3.55
4413 4584 1.308998 CTGCTAAGGCGGGTAAATGG 58.691 55.000 0.00 0.00 40.90 3.16
4443 4614 2.053627 GAACAAAAACAGCAGCGATGG 58.946 47.619 1.46 0.00 0.00 3.51
4622 4799 5.796502 ATTCCTTTGTCCAGATAGGGAAA 57.203 39.130 0.00 0.00 39.05 3.13
4623 4800 5.509498 CAATTCCTTTGTCCAGATAGGGAA 58.491 41.667 0.00 0.00 39.05 3.97
4648 4825 3.568853 AGCTGCATATTTCTCAGGCAATC 59.431 43.478 1.02 0.00 33.58 2.67
4712 4889 6.404623 CCCAATTGTGCTCGATAAGAAATTGA 60.405 38.462 16.15 0.00 35.72 2.57
4715 4892 4.202050 GCCCAATTGTGCTCGATAAGAAAT 60.202 41.667 5.58 0.00 0.00 2.17
4752 4929 0.899717 TTTCCAGGCTTGTCATGGGC 60.900 55.000 0.00 0.00 46.22 5.36
4755 4932 1.822990 AGCATTTCCAGGCTTGTCATG 59.177 47.619 0.00 0.00 36.92 3.07
4759 4936 2.967270 GGAGCATTTCCAGGCTTGT 58.033 52.632 0.00 0.00 46.01 3.16
4820 5028 2.703798 CCTAAACCCTCGTCGCGGA 61.704 63.158 6.13 0.00 0.00 5.54
4827 5035 3.008266 TGTTCCTAAACCCTAAACCCTCG 59.992 47.826 0.00 0.00 34.28 4.63
4831 5039 4.042560 AGAGGTGTTCCTAAACCCTAAACC 59.957 45.833 0.00 0.00 45.24 3.27
4832 5040 5.221783 TGAGAGGTGTTCCTAAACCCTAAAC 60.222 44.000 0.00 0.00 45.24 2.01
4834 5042 4.495565 TGAGAGGTGTTCCTAAACCCTAA 58.504 43.478 0.00 0.00 45.24 2.69
4835 5043 4.094476 CTGAGAGGTGTTCCTAAACCCTA 58.906 47.826 0.00 0.00 45.24 3.53
4837 5045 2.904434 TCTGAGAGGTGTTCCTAAACCC 59.096 50.000 0.00 0.00 45.24 4.11
4838 5046 4.828072 ATCTGAGAGGTGTTCCTAAACC 57.172 45.455 0.00 0.00 45.24 3.27
4839 5047 5.412904 CCAAATCTGAGAGGTGTTCCTAAAC 59.587 44.000 0.00 0.00 45.24 2.01
4840 5048 5.073144 ACCAAATCTGAGAGGTGTTCCTAAA 59.927 40.000 0.00 0.00 45.24 1.85
4841 5049 4.597507 ACCAAATCTGAGAGGTGTTCCTAA 59.402 41.667 0.00 0.00 45.24 2.69
4842 5050 4.020218 CACCAAATCTGAGAGGTGTTCCTA 60.020 45.833 10.32 0.00 45.24 2.94
4880 5100 2.802787 ATATGACTACGGCACTCTGC 57.197 50.000 0.00 0.00 44.08 4.26
4910 5130 2.159324 GCTTCTTGCTCATTTGTAGGGC 60.159 50.000 0.00 0.00 38.95 5.19
4947 5167 0.036164 TGGTGGCGAGCTGTGTAATT 59.964 50.000 0.00 0.00 0.00 1.40
4960 5180 1.241315 ACGGCTGTACATTTGGTGGC 61.241 55.000 0.00 0.00 0.00 5.01
5127 5347 1.596934 GCAGGTTGACATCCGGAGA 59.403 57.895 11.34 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.