Multiple sequence alignment - TraesCS4A01G016600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G016600 chr4A 100.000 2876 0 0 1589 4464 11297419 11300294 0.000000e+00 5312.0
1 TraesCS4A01G016600 chr4A 100.000 1137 0 0 1 1137 11295831 11296967 0.000000e+00 2100.0
2 TraesCS4A01G016600 chr4B 88.031 2849 139 81 1589 4330 571049542 571046789 0.000000e+00 3186.0
3 TraesCS4A01G016600 chr4B 94.159 428 8 4 704 1131 571049979 571049569 1.750000e-178 636.0
4 TraesCS4A01G016600 chr4B 94.231 260 10 2 1 259 571050907 571050652 4.190000e-105 392.0
5 TraesCS4A01G016600 chr4B 82.723 191 28 3 1914 2103 593422859 593423045 9.930000e-37 165.0
6 TraesCS4A01G016600 chr4D 88.961 2482 102 61 1589 3976 457074787 457077190 0.000000e+00 2907.0
7 TraesCS4A01G016600 chr4D 89.125 800 42 28 344 1131 457073994 457074760 0.000000e+00 953.0
8 TraesCS4A01G016600 chr4D 94.595 259 9 2 1 259 457073739 457073992 3.240000e-106 396.0
9 TraesCS4A01G016600 chr6D 83.495 206 32 2 1962 2166 380800280 380800076 1.640000e-44 191.0
10 TraesCS4A01G016600 chr6D 96.703 91 3 0 258 348 413065845 413065935 7.730000e-33 152.0
11 TraesCS4A01G016600 chr6A 83.495 206 32 2 1962 2166 522227015 522226811 1.640000e-44 191.0
12 TraesCS4A01G016600 chr6B 83.010 206 33 2 1962 2166 568258599 568258395 7.630000e-43 185.0
13 TraesCS4A01G016600 chr7D 96.629 89 3 0 257 345 221585294 221585382 1.000000e-31 148.0
14 TraesCS4A01G016600 chr7A 95.652 92 4 0 260 351 473897576 473897485 1.000000e-31 148.0
15 TraesCS4A01G016600 chr5A 96.629 89 2 1 260 347 45001837 45001925 3.600000e-31 147.0
16 TraesCS4A01G016600 chr3D 96.552 87 3 0 259 345 23941473 23941559 1.290000e-30 145.0
17 TraesCS4A01G016600 chr3D 92.857 98 6 1 249 345 31774586 31774489 1.670000e-29 141.0
18 TraesCS4A01G016600 chr5D 93.750 96 4 1 259 352 310766916 310766821 4.650000e-30 143.0
19 TraesCS4A01G016600 chr2B 94.565 92 5 0 256 347 254692305 254692214 4.650000e-30 143.0
20 TraesCS4A01G016600 chr2A 92.929 99 5 1 254 350 69385949 69386047 4.650000e-30 143.0
21 TraesCS4A01G016600 chr2A 100.000 33 0 0 4352 4384 327213095 327213063 1.340000e-05 62.1
22 TraesCS4A01G016600 chr2A 100.000 32 0 0 4352 4383 327415062 327415093 4.820000e-05 60.2
23 TraesCS4A01G016600 chr2A 94.286 35 1 1 4354 4388 535830773 535830740 8.000000e-03 52.8
24 TraesCS4A01G016600 chr2D 100.000 33 0 0 4352 4384 289163748 289163716 1.340000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G016600 chr4A 11295831 11300294 4463 False 3706.000000 5312 100.000000 1 4464 2 chr4A.!!$F1 4463
1 TraesCS4A01G016600 chr4B 571046789 571050907 4118 True 1404.666667 3186 92.140333 1 4330 3 chr4B.!!$R1 4329
2 TraesCS4A01G016600 chr4D 457073739 457077190 3451 False 1418.666667 2907 90.893667 1 3976 3 chr4D.!!$F1 3975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 185 0.108233 AATGGCGCCGCATCAAATTT 60.108 45.000 23.9 0.88 0.0 1.82 F
200 202 1.786937 TTTGGGCAGTTGATTGTGGT 58.213 45.000 0.0 0.00 0.0 4.16 F
201 203 1.786937 TTGGGCAGTTGATTGTGGTT 58.213 45.000 0.0 0.00 0.0 3.67 F
1135 1470 1.902918 CACCACCACCACCACCATG 60.903 63.158 0.0 0.00 0.0 3.66 F
2700 3136 0.459899 CTTCATCATCCCGGTCGTGA 59.540 55.000 0.0 1.46 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1426 0.250901 CTGGTGGTGTTCTTGGGAGG 60.251 60.0 0.00 0.0 0.00 4.30 R
1645 1980 0.251073 GTTATGGGTGTGCCTACCGT 59.749 55.0 0.93 0.0 41.79 4.83 R
1728 2063 0.807667 CAAAGACCTGGATCGGCTCG 60.808 60.0 0.00 0.0 0.00 5.03 R
2925 3398 0.033920 ATGCAGACGTTCAGCAGTGA 59.966 50.0 14.25 0.0 42.10 3.41 R
4134 4623 0.250727 GTGGGGCACAAAGTAGCTGA 60.251 55.0 0.00 0.0 34.08 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 5.452078 TGGAAGAAAATAAAGGCACTGTG 57.548 39.130 2.76 2.76 40.86 3.66
183 185 0.108233 AATGGCGCCGCATCAAATTT 60.108 45.000 23.90 0.88 0.00 1.82
185 187 2.166579 GGCGCCGCATCAAATTTGG 61.167 57.895 12.58 4.32 0.00 3.28
198 200 4.378774 TCAAATTTGGGCAGTTGATTGTG 58.621 39.130 17.90 0.00 0.00 3.33
199 201 3.405823 AATTTGGGCAGTTGATTGTGG 57.594 42.857 0.00 0.00 0.00 4.17
200 202 1.786937 TTTGGGCAGTTGATTGTGGT 58.213 45.000 0.00 0.00 0.00 4.16
201 203 1.786937 TTGGGCAGTTGATTGTGGTT 58.213 45.000 0.00 0.00 0.00 3.67
233 235 4.601794 TGCACAGGGCCCACTTGG 62.602 66.667 27.56 10.28 43.89 3.61
259 261 3.309121 CCCCCAGTGTGATGGTAATTTCT 60.309 47.826 0.00 0.00 38.81 2.52
260 262 4.080015 CCCCCAGTGTGATGGTAATTTCTA 60.080 45.833 0.00 0.00 38.81 2.10
261 263 4.881850 CCCCAGTGTGATGGTAATTTCTAC 59.118 45.833 0.00 0.00 38.81 2.59
262 264 5.339200 CCCCAGTGTGATGGTAATTTCTACT 60.339 44.000 0.00 0.00 38.81 2.57
263 265 5.817816 CCCAGTGTGATGGTAATTTCTACTC 59.182 44.000 0.00 0.00 38.81 2.59
264 266 5.817816 CCAGTGTGATGGTAATTTCTACTCC 59.182 44.000 0.00 0.00 35.47 3.85
265 267 5.817816 CAGTGTGATGGTAATTTCTACTCCC 59.182 44.000 0.00 0.00 0.00 4.30
266 268 5.726793 AGTGTGATGGTAATTTCTACTCCCT 59.273 40.000 0.00 0.00 0.00 4.20
267 269 6.049790 GTGTGATGGTAATTTCTACTCCCTC 58.950 44.000 0.00 0.00 0.00 4.30
268 270 5.130477 TGTGATGGTAATTTCTACTCCCTCC 59.870 44.000 0.00 0.00 0.00 4.30
269 271 4.344102 TGATGGTAATTTCTACTCCCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
270 272 3.716431 TGGTAATTTCTACTCCCTCCGT 58.284 45.455 0.00 0.00 0.00 4.69
271 273 3.703052 TGGTAATTTCTACTCCCTCCGTC 59.297 47.826 0.00 0.00 0.00 4.79
272 274 3.959449 GGTAATTTCTACTCCCTCCGTCT 59.041 47.826 0.00 0.00 0.00 4.18
273 275 4.037803 GGTAATTTCTACTCCCTCCGTCTC 59.962 50.000 0.00 0.00 0.00 3.36
274 276 2.893215 TTTCTACTCCCTCCGTCTCA 57.107 50.000 0.00 0.00 0.00 3.27
275 277 2.893215 TTCTACTCCCTCCGTCTCAA 57.107 50.000 0.00 0.00 0.00 3.02
276 278 2.893215 TCTACTCCCTCCGTCTCAAA 57.107 50.000 0.00 0.00 0.00 2.69
277 279 3.165087 TCTACTCCCTCCGTCTCAAAA 57.835 47.619 0.00 0.00 0.00 2.44
278 280 3.709587 TCTACTCCCTCCGTCTCAAAAT 58.290 45.455 0.00 0.00 0.00 1.82
279 281 4.863548 TCTACTCCCTCCGTCTCAAAATA 58.136 43.478 0.00 0.00 0.00 1.40
280 282 5.455872 TCTACTCCCTCCGTCTCAAAATAT 58.544 41.667 0.00 0.00 0.00 1.28
281 283 6.607970 TCTACTCCCTCCGTCTCAAAATATA 58.392 40.000 0.00 0.00 0.00 0.86
282 284 7.064866 TCTACTCCCTCCGTCTCAAAATATAA 58.935 38.462 0.00 0.00 0.00 0.98
283 285 6.555463 ACTCCCTCCGTCTCAAAATATAAA 57.445 37.500 0.00 0.00 0.00 1.40
284 286 6.954232 ACTCCCTCCGTCTCAAAATATAAAA 58.046 36.000 0.00 0.00 0.00 1.52
285 287 7.399634 ACTCCCTCCGTCTCAAAATATAAAAA 58.600 34.615 0.00 0.00 0.00 1.94
286 288 7.336176 ACTCCCTCCGTCTCAAAATATAAAAAC 59.664 37.037 0.00 0.00 0.00 2.43
287 289 6.314400 TCCCTCCGTCTCAAAATATAAAAACG 59.686 38.462 0.00 0.00 0.00 3.60
288 290 6.093082 CCCTCCGTCTCAAAATATAAAAACGT 59.907 38.462 0.00 0.00 0.00 3.99
289 291 7.361457 CCCTCCGTCTCAAAATATAAAAACGTT 60.361 37.037 0.00 0.00 0.00 3.99
290 292 8.019094 CCTCCGTCTCAAAATATAAAAACGTTT 58.981 33.333 7.96 7.96 0.00 3.60
291 293 9.389570 CTCCGTCTCAAAATATAAAAACGTTTT 57.610 29.630 20.26 20.26 0.00 2.43
292 294 9.733219 TCCGTCTCAAAATATAAAAACGTTTTT 57.267 25.926 33.94 33.94 42.51 1.94
331 333 9.626045 GTGTCAAAAACTTTCTTATATTCTGGG 57.374 33.333 0.00 0.00 0.00 4.45
332 334 9.581289 TGTCAAAAACTTTCTTATATTCTGGGA 57.419 29.630 0.00 0.00 0.00 4.37
333 335 9.841880 GTCAAAAACTTTCTTATATTCTGGGAC 57.158 33.333 0.00 0.00 0.00 4.46
334 336 9.581289 TCAAAAACTTTCTTATATTCTGGGACA 57.419 29.630 0.00 0.00 0.00 4.02
355 450 6.402456 ACAGAGGGAGTAATTTATACGTCC 57.598 41.667 0.00 0.00 0.00 4.79
359 454 5.608449 AGGGAGTAATTTATACGTCCTTGC 58.392 41.667 0.00 0.00 0.00 4.01
388 483 4.272748 GGCATATCGGAAAAAGGTGTACTC 59.727 45.833 0.00 0.00 0.00 2.59
398 493 4.513406 AAAGGTGTACTCTGGGTTTCAA 57.487 40.909 0.00 0.00 0.00 2.69
465 560 6.948589 GGAAGAACCTAGAATAAGGACAACT 58.051 40.000 0.00 0.00 39.15 3.16
466 561 6.819146 GGAAGAACCTAGAATAAGGACAACTG 59.181 42.308 0.00 0.00 39.15 3.16
467 562 5.735766 AGAACCTAGAATAAGGACAACTGC 58.264 41.667 0.00 0.00 39.15 4.40
468 563 5.248477 AGAACCTAGAATAAGGACAACTGCA 59.752 40.000 0.00 0.00 39.15 4.41
469 564 5.700402 ACCTAGAATAAGGACAACTGCAT 57.300 39.130 0.00 0.00 39.15 3.96
488 583 5.434408 TGCATTGCTGATCAGAAGACTTAT 58.566 37.500 27.04 2.73 0.00 1.73
492 587 8.400947 GCATTGCTGATCAGAAGACTTATAAAA 58.599 33.333 27.04 0.00 0.00 1.52
536 632 9.768215 AATTAAGAAAAACTCATATTCCCTCCA 57.232 29.630 0.00 0.00 0.00 3.86
543 854 5.316158 ACTCATATTCCCTCCAATCCAAG 57.684 43.478 0.00 0.00 0.00 3.61
557 868 8.971073 CCTCCAATCCAAGATAAAATAAGTGTT 58.029 33.333 0.00 0.00 0.00 3.32
559 870 8.250332 TCCAATCCAAGATAAAATAAGTGTTGC 58.750 33.333 0.00 0.00 0.00 4.17
565 876 8.915654 CCAAGATAAAATAAGTGTTGCAGTTTC 58.084 33.333 0.00 0.00 0.00 2.78
568 879 8.230486 AGATAAAATAAGTGTTGCAGTTTCGAG 58.770 33.333 0.00 0.00 0.00 4.04
575 886 4.275936 AGTGTTGCAGTTTCGAGCTAATTT 59.724 37.500 0.00 0.00 0.00 1.82
576 887 5.468746 AGTGTTGCAGTTTCGAGCTAATTTA 59.531 36.000 0.00 0.00 0.00 1.40
603 915 7.934457 ACTAGAGTTAGTTCAAAACTACGACA 58.066 34.615 0.00 0.00 43.30 4.35
607 919 7.763071 AGAGTTAGTTCAAAACTACGACACTTT 59.237 33.333 0.00 0.00 43.30 2.66
608 920 8.260270 AGTTAGTTCAAAACTACGACACTTTT 57.740 30.769 0.00 0.00 43.30 2.27
609 921 8.724229 AGTTAGTTCAAAACTACGACACTTTTT 58.276 29.630 0.00 0.00 43.30 1.94
616 928 9.872757 TCAAAACTACGACACTTTTTATGAATC 57.127 29.630 0.00 0.00 0.00 2.52
617 929 9.878599 CAAAACTACGACACTTTTTATGAATCT 57.121 29.630 0.00 0.00 0.00 2.40
618 930 9.878599 AAAACTACGACACTTTTTATGAATCTG 57.121 29.630 0.00 0.00 0.00 2.90
619 931 8.827177 AACTACGACACTTTTTATGAATCTGA 57.173 30.769 0.00 0.00 0.00 3.27
620 932 8.467402 ACTACGACACTTTTTATGAATCTGAG 57.533 34.615 0.00 0.00 0.00 3.35
621 933 6.727824 ACGACACTTTTTATGAATCTGAGG 57.272 37.500 0.00 0.00 0.00 3.86
622 934 6.231211 ACGACACTTTTTATGAATCTGAGGT 58.769 36.000 0.00 0.00 0.00 3.85
623 935 7.383687 ACGACACTTTTTATGAATCTGAGGTA 58.616 34.615 0.00 0.00 0.00 3.08
624 936 7.545965 ACGACACTTTTTATGAATCTGAGGTAG 59.454 37.037 0.00 0.00 0.00 3.18
625 937 7.545965 CGACACTTTTTATGAATCTGAGGTAGT 59.454 37.037 0.00 0.00 0.00 2.73
626 938 9.871238 GACACTTTTTATGAATCTGAGGTAGTA 57.129 33.333 0.00 0.00 0.00 1.82
627 939 9.654663 ACACTTTTTATGAATCTGAGGTAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
628 940 9.653287 CACTTTTTATGAATCTGAGGTAGTACA 57.347 33.333 2.06 0.00 0.00 2.90
629 941 9.877178 ACTTTTTATGAATCTGAGGTAGTACAG 57.123 33.333 2.06 0.00 35.72 2.74
630 942 9.877178 CTTTTTATGAATCTGAGGTAGTACAGT 57.123 33.333 2.06 0.00 35.84 3.55
908 1242 2.292192 CCCCCTCTCAGTTTCTCTCTCT 60.292 54.545 0.00 0.00 0.00 3.10
909 1243 3.023832 CCCCTCTCAGTTTCTCTCTCTC 58.976 54.545 0.00 0.00 0.00 3.20
910 1244 3.563261 CCCCTCTCAGTTTCTCTCTCTCA 60.563 52.174 0.00 0.00 0.00 3.27
911 1245 3.443681 CCCTCTCAGTTTCTCTCTCTCAC 59.556 52.174 0.00 0.00 0.00 3.51
912 1246 4.078537 CCTCTCAGTTTCTCTCTCTCACA 58.921 47.826 0.00 0.00 0.00 3.58
913 1247 4.082787 CCTCTCAGTTTCTCTCTCTCACAC 60.083 50.000 0.00 0.00 0.00 3.82
1131 1466 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1132 1467 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1134 1469 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
1135 1470 1.902918 CACCACCACCACCACCATG 60.903 63.158 0.00 0.00 0.00 3.66
1643 1978 2.683933 TCCCTCCAGGACTTCCGC 60.684 66.667 0.00 0.00 40.93 5.54
1645 1980 3.068691 CCTCCAGGACTTCCGCGA 61.069 66.667 8.23 0.00 42.08 5.87
1728 2063 2.202557 GCAATGCGCCGGTAAACC 60.203 61.111 4.18 0.00 32.94 3.27
1762 2097 3.181520 GGTCTTTGCTAACATGCTGTACG 60.182 47.826 0.00 0.00 0.00 3.67
2253 2602 5.125100 AGACCACAATGCAAATTAGTGTG 57.875 39.130 0.00 1.25 42.06 3.82
2254 2603 4.826733 AGACCACAATGCAAATTAGTGTGA 59.173 37.500 8.47 0.00 44.32 3.58
2255 2604 5.048504 AGACCACAATGCAAATTAGTGTGAG 60.049 40.000 8.47 2.86 44.32 3.51
2256 2605 4.584325 ACCACAATGCAAATTAGTGTGAGT 59.416 37.500 8.47 3.36 44.32 3.41
2257 2606 5.767665 ACCACAATGCAAATTAGTGTGAGTA 59.232 36.000 8.47 0.00 44.32 2.59
2258 2607 6.072508 ACCACAATGCAAATTAGTGTGAGTAG 60.073 38.462 8.47 0.00 44.32 2.57
2259 2608 5.796935 CACAATGCAAATTAGTGTGAGTAGC 59.203 40.000 1.92 0.00 44.32 3.58
2260 2609 5.707298 ACAATGCAAATTAGTGTGAGTAGCT 59.293 36.000 0.00 0.00 0.00 3.32
2261 2610 6.128172 ACAATGCAAATTAGTGTGAGTAGCTC 60.128 38.462 0.00 0.00 0.00 4.09
2262 2611 4.253685 TGCAAATTAGTGTGAGTAGCTCC 58.746 43.478 0.00 0.00 0.00 4.70
2263 2612 3.307242 GCAAATTAGTGTGAGTAGCTCCG 59.693 47.826 0.00 0.00 0.00 4.63
2264 2613 3.802948 AATTAGTGTGAGTAGCTCCGG 57.197 47.619 0.00 0.00 0.00 5.14
2265 2614 0.815734 TTAGTGTGAGTAGCTCCGGC 59.184 55.000 0.00 0.00 39.06 6.13
2283 2641 1.970917 GCAGTCAATTCAGTCCGGCG 61.971 60.000 0.00 0.00 0.00 6.46
2485 2860 3.709987 CTTGCAGAAAGGTTGTTGGAAG 58.290 45.455 0.00 0.00 33.72 3.46
2562 2956 1.466558 GAGCAGGCACAGTAGCTTTTC 59.533 52.381 0.00 0.00 37.48 2.29
2602 2996 4.435436 CAGCGTCCGCAGCAGGTA 62.435 66.667 14.70 0.00 44.88 3.08
2642 3069 1.258445 GCCGAGTCCTTTGAGGAGGA 61.258 60.000 0.00 0.00 46.90 3.71
2643 3070 1.490574 CCGAGTCCTTTGAGGAGGAT 58.509 55.000 0.00 0.00 46.90 3.24
2644 3071 1.410882 CCGAGTCCTTTGAGGAGGATC 59.589 57.143 0.00 0.00 46.90 3.36
2700 3136 0.459899 CTTCATCATCCCGGTCGTGA 59.540 55.000 0.00 1.46 0.00 4.35
2711 3147 0.521735 CGGTCGTGACATCTCTGTGA 59.478 55.000 2.00 0.00 35.14 3.58
2740 3191 2.488820 GTCGCAGGGACGTACTCC 59.511 66.667 1.18 0.00 35.61 3.85
2747 3198 3.834799 GGACGTACTCCCCCGCTG 61.835 72.222 0.00 0.00 31.83 5.18
2748 3199 4.509737 GACGTACTCCCCCGCTGC 62.510 72.222 0.00 0.00 0.00 5.25
2796 3251 1.226945 GCAATTATGTGTGGGCCGC 60.227 57.895 10.94 10.94 0.00 6.53
2860 3315 2.612972 GCAGGTCAGCAAGTGTAGCTTA 60.613 50.000 0.00 0.00 41.14 3.09
2861 3316 3.257393 CAGGTCAGCAAGTGTAGCTTAG 58.743 50.000 0.00 0.00 41.14 2.18
2862 3317 2.003301 GGTCAGCAAGTGTAGCTTAGC 58.997 52.381 0.00 0.00 41.14 3.09
2886 3341 4.569943 TGCTTTCTCCTTGTTGCTAGTAG 58.430 43.478 0.00 0.00 0.00 2.57
2888 3343 5.245301 TGCTTTCTCCTTGTTGCTAGTAGTA 59.755 40.000 0.00 0.00 0.00 1.82
2905 3378 5.144100 AGTAGTACTAGCATTCAGGCAGAT 58.856 41.667 1.87 0.00 35.83 2.90
2922 3395 4.154375 GGCAGATACAGATGCATGATTCAG 59.846 45.833 2.46 0.00 44.37 3.02
2923 3396 4.995487 GCAGATACAGATGCATGATTCAGA 59.005 41.667 2.46 0.00 42.11 3.27
2924 3397 5.644206 GCAGATACAGATGCATGATTCAGAT 59.356 40.000 2.46 0.00 42.11 2.90
2925 3398 6.149640 GCAGATACAGATGCATGATTCAGATT 59.850 38.462 2.46 0.00 42.11 2.40
2926 3399 7.624554 GCAGATACAGATGCATGATTCAGATTC 60.625 40.741 2.46 0.00 42.11 2.52
2927 3400 7.387948 CAGATACAGATGCATGATTCAGATTCA 59.612 37.037 2.46 0.00 0.00 2.57
2971 3444 6.047231 ACTACCAATGCGAAATTCTAGGTAC 58.953 40.000 0.00 0.00 0.00 3.34
2973 3446 4.080526 ACCAATGCGAAATTCTAGGTACCT 60.081 41.667 20.57 20.57 0.00 3.08
2974 3447 4.273480 CCAATGCGAAATTCTAGGTACCTG 59.727 45.833 25.33 14.14 0.00 4.00
2975 3448 2.901249 TGCGAAATTCTAGGTACCTGC 58.099 47.619 25.33 16.33 0.00 4.85
2976 3449 2.210961 GCGAAATTCTAGGTACCTGCC 58.789 52.381 25.33 4.57 0.00 4.85
2977 3450 2.419574 GCGAAATTCTAGGTACCTGCCA 60.420 50.000 25.33 7.93 0.00 4.92
2978 3451 3.869065 CGAAATTCTAGGTACCTGCCAA 58.131 45.455 25.33 13.81 0.00 4.52
3000 3473 0.526096 CCATGCTTGCATTGCGTACC 60.526 55.000 5.24 0.00 0.00 3.34
3006 3479 0.320508 TTGCATTGCGTACCGGTACA 60.321 50.000 36.87 22.66 35.87 2.90
3011 3484 0.887247 TTGCGTACCGGTACAAGCTA 59.113 50.000 36.87 27.53 35.87 3.32
3012 3485 0.452987 TGCGTACCGGTACAAGCTAG 59.547 55.000 36.87 23.47 35.87 3.42
3013 3486 0.869028 GCGTACCGGTACAAGCTAGC 60.869 60.000 36.87 28.00 35.87 3.42
3014 3487 0.737219 CGTACCGGTACAAGCTAGCT 59.263 55.000 36.87 12.68 35.87 3.32
3015 3488 1.942657 CGTACCGGTACAAGCTAGCTA 59.057 52.381 36.87 0.00 35.87 3.32
3016 3489 2.355756 CGTACCGGTACAAGCTAGCTAA 59.644 50.000 36.87 3.77 35.87 3.09
3059 3538 7.049754 TGTTGAATGCTGATGTATACTGATGT 58.950 34.615 4.17 0.00 0.00 3.06
3060 3539 8.203485 TGTTGAATGCTGATGTATACTGATGTA 58.797 33.333 4.17 0.00 0.00 2.29
3061 3540 9.212641 GTTGAATGCTGATGTATACTGATGTAT 57.787 33.333 4.17 0.00 41.72 2.29
3298 3777 2.036098 TTCTACCCCTCCGTCGCA 59.964 61.111 0.00 0.00 0.00 5.10
3403 3882 1.743252 CAGCTTCGGCAACCTCCTC 60.743 63.158 0.00 0.00 44.74 3.71
3472 3951 0.389948 AGTTCAACTGATCGTCCGGC 60.390 55.000 0.00 0.00 0.00 6.13
3589 4068 4.386867 TGGATTCTTGATGAGGACGTAC 57.613 45.455 0.00 0.00 0.00 3.67
3590 4069 3.181490 TGGATTCTTGATGAGGACGTACG 60.181 47.826 15.01 15.01 0.00 3.67
3591 4070 3.181489 GGATTCTTGATGAGGACGTACGT 60.181 47.826 23.04 23.04 0.00 3.57
3592 4071 2.913777 TCTTGATGAGGACGTACGTG 57.086 50.000 28.16 7.99 0.00 4.49
3634 4113 3.021695 ACATGCATGTTTGATGAGAGGG 58.978 45.455 26.61 0.00 37.90 4.30
3635 4114 2.133281 TGCATGTTTGATGAGAGGGG 57.867 50.000 0.00 0.00 0.00 4.79
3636 4115 1.341285 TGCATGTTTGATGAGAGGGGG 60.341 52.381 0.00 0.00 0.00 5.40
3657 4136 3.012518 GGTTCAGTTCATCCATGAGGTG 58.987 50.000 0.00 0.00 38.19 4.00
3695 4174 2.679837 GTGATGCGATTTGAGTCATGGT 59.320 45.455 0.00 0.00 0.00 3.55
3696 4175 2.938451 TGATGCGATTTGAGTCATGGTC 59.062 45.455 0.00 0.00 0.00 4.02
3697 4176 2.470983 TGCGATTTGAGTCATGGTCA 57.529 45.000 0.00 0.00 0.00 4.02
3698 4177 2.989909 TGCGATTTGAGTCATGGTCAT 58.010 42.857 0.00 0.00 0.00 3.06
3699 4178 2.679336 TGCGATTTGAGTCATGGTCATG 59.321 45.455 4.67 4.67 40.09 3.07
3700 4179 2.032550 GCGATTTGAGTCATGGTCATGG 59.967 50.000 10.61 0.00 39.24 3.66
3729 4208 4.405680 TCGAGTTGATGATGAATAGTGGGT 59.594 41.667 0.00 0.00 0.00 4.51
3730 4209 4.509230 CGAGTTGATGATGAATAGTGGGTG 59.491 45.833 0.00 0.00 0.00 4.61
3731 4210 4.785301 AGTTGATGATGAATAGTGGGTGG 58.215 43.478 0.00 0.00 0.00 4.61
3732 4211 3.862877 TGATGATGAATAGTGGGTGGG 57.137 47.619 0.00 0.00 0.00 4.61
3738 4217 1.081513 TGAATAGTGGGTGGGGGTACT 59.918 52.381 0.00 0.00 0.00 2.73
3774 4253 1.641677 GGTGTGTGTGAAGCGTGTC 59.358 57.895 0.00 0.00 0.00 3.67
3892 4377 0.951558 AATTGTGAGGCGGTGTGTTC 59.048 50.000 0.00 0.00 0.00 3.18
3988 4477 3.122948 GTGACATACTTAGTGTGGTTGCG 59.877 47.826 13.39 0.00 0.00 4.85
3989 4478 3.006003 TGACATACTTAGTGTGGTTGCGA 59.994 43.478 13.39 0.00 0.00 5.10
4017 4506 0.460311 CGAGAGGCCGAGGTTAACAT 59.540 55.000 8.10 0.00 0.00 2.71
4020 4509 3.243771 CGAGAGGCCGAGGTTAACATATT 60.244 47.826 8.10 0.00 0.00 1.28
4057 4546 9.461312 AAAATGCTTACTATTGTCCATAGTTCA 57.539 29.630 2.15 0.66 45.19 3.18
4112 4601 9.927668 AAATACATTTTTCCAAAGGACTACATG 57.072 29.630 0.00 0.00 0.00 3.21
4146 4636 9.822185 AATTTTCAGAAAATTCAGCTACTTTGT 57.178 25.926 23.03 2.32 45.32 2.83
4151 4641 1.839424 ATTCAGCTACTTTGTGCCCC 58.161 50.000 0.00 0.00 0.00 5.80
4152 4642 0.476338 TTCAGCTACTTTGTGCCCCA 59.524 50.000 0.00 0.00 0.00 4.96
4154 4644 1.074951 AGCTACTTTGTGCCCCACC 59.925 57.895 0.00 0.00 32.73 4.61
4155 4645 1.228429 GCTACTTTGTGCCCCACCA 60.228 57.895 0.00 0.00 32.73 4.17
4157 4647 1.923356 CTACTTTGTGCCCCACCATT 58.077 50.000 0.00 0.00 32.73 3.16
4158 4648 1.545582 CTACTTTGTGCCCCACCATTG 59.454 52.381 0.00 0.00 32.73 2.82
4176 4668 5.647225 ACCATTGAACATTTGCACAAGTTTT 59.353 32.000 0.00 0.00 0.00 2.43
4178 4670 6.687958 CCATTGAACATTTGCACAAGTTTTTC 59.312 34.615 0.00 0.00 0.00 2.29
4182 4674 4.499183 ACATTTGCACAAGTTTTTCGGAA 58.501 34.783 0.00 0.00 0.00 4.30
4187 4679 2.863137 GCACAAGTTTTTCGGAAATGCA 59.137 40.909 15.73 0.00 30.14 3.96
4194 4686 8.026026 ACAAGTTTTTCGGAAATGCAAAATTTT 58.974 25.926 3.67 0.00 0.00 1.82
4195 4687 8.522661 CAAGTTTTTCGGAAATGCAAAATTTTC 58.477 29.630 3.67 0.00 0.00 2.29
4196 4688 7.984391 AGTTTTTCGGAAATGCAAAATTTTCT 58.016 26.923 3.67 0.00 33.38 2.52
4200 4692 9.709600 TTTTCGGAAATGCAAAATTTTCTAAAC 57.290 25.926 3.67 0.00 33.38 2.01
4202 4694 8.425577 TCGGAAATGCAAAATTTTCTAAACAA 57.574 26.923 0.00 0.00 33.38 2.83
4203 4695 8.547069 TCGGAAATGCAAAATTTTCTAAACAAG 58.453 29.630 0.00 0.00 33.38 3.16
4204 4696 8.334632 CGGAAATGCAAAATTTTCTAAACAAGT 58.665 29.630 0.00 0.00 33.38 3.16
4287 4779 7.404671 AAAATGGATGTACTACAATTGACCC 57.595 36.000 13.59 0.00 0.00 4.46
4288 4780 5.708736 ATGGATGTACTACAATTGACCCA 57.291 39.130 13.59 4.18 0.00 4.51
4289 4781 5.097742 TGGATGTACTACAATTGACCCAG 57.902 43.478 13.59 6.07 0.00 4.45
4294 4788 4.836175 TGTACTACAATTGACCCAGAGTGA 59.164 41.667 13.59 0.00 0.00 3.41
4305 4799 5.200483 TGACCCAGAGTGAATGAAACTTTT 58.800 37.500 0.00 0.00 0.00 2.27
4307 4801 6.831353 TGACCCAGAGTGAATGAAACTTTTAA 59.169 34.615 0.00 0.00 0.00 1.52
4309 4803 7.716612 ACCCAGAGTGAATGAAACTTTTAAAG 58.283 34.615 2.81 2.81 0.00 1.85
4330 4824 9.849166 TTAAAGAATCAAATATGTTCGGGTTTC 57.151 29.630 0.00 0.00 0.00 2.78
4331 4825 6.119144 AGAATCAAATATGTTCGGGTTTCG 57.881 37.500 0.00 0.00 40.90 3.46
4332 4826 4.893424 ATCAAATATGTTCGGGTTTCGG 57.107 40.909 0.00 0.00 39.77 4.30
4333 4827 3.677190 TCAAATATGTTCGGGTTTCGGT 58.323 40.909 0.00 0.00 39.77 4.69
4334 4828 3.437395 TCAAATATGTTCGGGTTTCGGTG 59.563 43.478 0.00 0.00 39.77 4.94
4335 4829 3.337694 AATATGTTCGGGTTTCGGTGA 57.662 42.857 0.00 0.00 39.77 4.02
4336 4830 3.553828 ATATGTTCGGGTTTCGGTGAT 57.446 42.857 0.00 0.00 39.77 3.06
4337 4831 4.675976 ATATGTTCGGGTTTCGGTGATA 57.324 40.909 0.00 0.00 39.77 2.15
4338 4832 3.553828 ATGTTCGGGTTTCGGTGATAT 57.446 42.857 0.00 0.00 39.77 1.63
4339 4833 3.337694 TGTTCGGGTTTCGGTGATATT 57.662 42.857 0.00 0.00 39.77 1.28
4340 4834 3.677190 TGTTCGGGTTTCGGTGATATTT 58.323 40.909 0.00 0.00 39.77 1.40
4341 4835 3.685756 TGTTCGGGTTTCGGTGATATTTC 59.314 43.478 0.00 0.00 39.77 2.17
4342 4836 3.899052 TCGGGTTTCGGTGATATTTCT 57.101 42.857 0.00 0.00 39.77 2.52
4343 4837 4.210724 TCGGGTTTCGGTGATATTTCTT 57.789 40.909 0.00 0.00 39.77 2.52
4344 4838 3.936453 TCGGGTTTCGGTGATATTTCTTG 59.064 43.478 0.00 0.00 39.77 3.02
4345 4839 3.064820 CGGGTTTCGGTGATATTTCTTGG 59.935 47.826 0.00 0.00 34.75 3.61
4346 4840 4.266714 GGGTTTCGGTGATATTTCTTGGA 58.733 43.478 0.00 0.00 0.00 3.53
4347 4841 4.703093 GGGTTTCGGTGATATTTCTTGGAA 59.297 41.667 0.00 0.00 0.00 3.53
4348 4842 5.163652 GGGTTTCGGTGATATTTCTTGGAAG 60.164 44.000 0.00 0.00 0.00 3.46
4349 4843 5.163652 GGTTTCGGTGATATTTCTTGGAAGG 60.164 44.000 0.00 0.00 0.00 3.46
4350 4844 3.541632 TCGGTGATATTTCTTGGAAGGC 58.458 45.455 0.00 0.00 0.00 4.35
4351 4845 3.054728 TCGGTGATATTTCTTGGAAGGCA 60.055 43.478 0.00 0.00 0.00 4.75
4352 4846 3.065371 CGGTGATATTTCTTGGAAGGCAC 59.935 47.826 0.00 0.00 0.00 5.01
4354 4848 4.336713 GGTGATATTTCTTGGAAGGCACTC 59.663 45.833 0.00 0.00 38.49 3.51
4355 4849 4.336713 GTGATATTTCTTGGAAGGCACTCC 59.663 45.833 0.00 0.00 38.49 3.85
4365 4859 2.791253 AGGCACTCCTTCCATTCCA 58.209 52.632 0.00 0.00 40.66 3.53
4366 4860 1.302907 AGGCACTCCTTCCATTCCAT 58.697 50.000 0.00 0.00 40.66 3.41
4367 4861 2.492025 AGGCACTCCTTCCATTCCATA 58.508 47.619 0.00 0.00 40.66 2.74
4368 4862 2.852449 AGGCACTCCTTCCATTCCATAA 59.148 45.455 0.00 0.00 40.66 1.90
4369 4863 3.464833 AGGCACTCCTTCCATTCCATAAT 59.535 43.478 0.00 0.00 40.66 1.28
4370 4864 3.571401 GGCACTCCTTCCATTCCATAATG 59.429 47.826 0.00 0.00 41.90 1.90
4371 4865 4.210331 GCACTCCTTCCATTCCATAATGT 58.790 43.478 0.00 0.00 40.84 2.71
4372 4866 5.376625 GCACTCCTTCCATTCCATAATGTA 58.623 41.667 0.00 0.00 40.84 2.29
4373 4867 5.827797 GCACTCCTTCCATTCCATAATGTAA 59.172 40.000 0.00 0.00 40.84 2.41
4374 4868 6.016777 GCACTCCTTCCATTCCATAATGTAAG 60.017 42.308 0.00 0.00 40.84 2.34
4375 4869 7.282585 CACTCCTTCCATTCCATAATGTAAGA 58.717 38.462 5.34 0.00 39.94 2.10
4376 4870 7.941238 CACTCCTTCCATTCCATAATGTAAGAT 59.059 37.037 5.34 0.00 39.94 2.40
4377 4871 7.941238 ACTCCTTCCATTCCATAATGTAAGATG 59.059 37.037 5.34 1.76 39.94 2.90
4378 4872 7.815383 TCCTTCCATTCCATAATGTAAGATGT 58.185 34.615 5.34 0.00 39.94 3.06
4379 4873 8.281531 TCCTTCCATTCCATAATGTAAGATGTT 58.718 33.333 5.34 0.00 39.94 2.71
4380 4874 8.917088 CCTTCCATTCCATAATGTAAGATGTTT 58.083 33.333 5.34 0.00 39.94 2.83
4418 4912 5.505173 CGTCTTACGGAGGGAGTAATTAA 57.495 43.478 0.00 0.00 38.08 1.40
4419 4913 6.081872 CGTCTTACGGAGGGAGTAATTAAT 57.918 41.667 0.00 0.00 38.08 1.40
4420 4914 6.510536 CGTCTTACGGAGGGAGTAATTAATT 58.489 40.000 5.89 5.89 38.08 1.40
4421 4915 6.420008 CGTCTTACGGAGGGAGTAATTAATTG 59.580 42.308 11.05 0.00 38.08 2.32
4422 4916 6.704937 GTCTTACGGAGGGAGTAATTAATTGG 59.295 42.308 11.05 0.00 34.10 3.16
4423 4917 6.612456 TCTTACGGAGGGAGTAATTAATTGGA 59.388 38.462 11.05 0.00 34.10 3.53
4424 4918 5.906772 ACGGAGGGAGTAATTAATTGGAT 57.093 39.130 11.05 0.00 0.00 3.41
4425 4919 5.621193 ACGGAGGGAGTAATTAATTGGATG 58.379 41.667 11.05 0.00 0.00 3.51
4426 4920 5.368523 ACGGAGGGAGTAATTAATTGGATGA 59.631 40.000 11.05 0.00 0.00 2.92
4427 4921 6.126594 ACGGAGGGAGTAATTAATTGGATGAA 60.127 38.462 11.05 0.00 0.00 2.57
4428 4922 6.942576 CGGAGGGAGTAATTAATTGGATGAAT 59.057 38.462 11.05 0.00 0.00 2.57
4429 4923 8.100791 CGGAGGGAGTAATTAATTGGATGAATA 58.899 37.037 11.05 0.00 0.00 1.75
4430 4924 9.981460 GGAGGGAGTAATTAATTGGATGAATAT 57.019 33.333 11.05 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.021981 GCTTCCACAGTGCCTTTATTTTCT 60.022 41.667 0.00 0.00 0.00 2.52
29 31 3.508402 GGCTGAGTAGGATAGTAGCTTCC 59.492 52.174 0.00 0.00 0.00 3.46
183 185 1.786937 AAACCACAATCAACTGCCCA 58.213 45.000 0.00 0.00 0.00 5.36
185 187 6.859420 AAAATTAAACCACAATCAACTGCC 57.141 33.333 0.00 0.00 0.00 4.85
198 200 6.586082 CCTGTGCACACTGATAAAATTAAACC 59.414 38.462 17.42 0.00 32.81 3.27
199 201 6.586082 CCCTGTGCACACTGATAAAATTAAAC 59.414 38.462 17.42 0.00 32.81 2.01
200 202 6.686630 CCCTGTGCACACTGATAAAATTAAA 58.313 36.000 17.42 0.00 32.81 1.52
201 203 5.336372 GCCCTGTGCACACTGATAAAATTAA 60.336 40.000 17.42 0.00 40.77 1.40
233 235 0.696501 ACCATCACACTGGGGGTTAC 59.303 55.000 0.00 0.00 40.85 2.50
259 261 7.664552 TTTATATTTTGAGACGGAGGGAGTA 57.335 36.000 0.00 0.00 0.00 2.59
260 262 6.555463 TTTATATTTTGAGACGGAGGGAGT 57.445 37.500 0.00 0.00 0.00 3.85
261 263 7.465513 CGTTTTTATATTTTGAGACGGAGGGAG 60.466 40.741 0.00 0.00 0.00 4.30
262 264 6.314400 CGTTTTTATATTTTGAGACGGAGGGA 59.686 38.462 0.00 0.00 0.00 4.20
263 265 6.093082 ACGTTTTTATATTTTGAGACGGAGGG 59.907 38.462 0.00 0.00 33.95 4.30
264 266 7.068692 ACGTTTTTATATTTTGAGACGGAGG 57.931 36.000 0.00 0.00 33.95 4.30
265 267 8.944212 AAACGTTTTTATATTTTGAGACGGAG 57.056 30.769 7.96 0.00 33.95 4.63
266 268 9.733219 AAAAACGTTTTTATATTTTGAGACGGA 57.267 25.926 31.82 0.00 38.50 4.69
296 298 8.451908 AAGAAAGTTTTTGACACTATGCTAGT 57.548 30.769 0.00 0.00 40.28 2.57
305 307 9.626045 CCCAGAATATAAGAAAGTTTTTGACAC 57.374 33.333 0.00 0.00 0.00 3.67
306 308 9.581289 TCCCAGAATATAAGAAAGTTTTTGACA 57.419 29.630 0.00 0.00 0.00 3.58
307 309 9.841880 GTCCCAGAATATAAGAAAGTTTTTGAC 57.158 33.333 0.00 0.00 0.00 3.18
308 310 9.581289 TGTCCCAGAATATAAGAAAGTTTTTGA 57.419 29.630 0.00 0.00 0.00 2.69
309 311 9.846248 CTGTCCCAGAATATAAGAAAGTTTTTG 57.154 33.333 0.00 0.00 32.44 2.44
310 312 9.807921 TCTGTCCCAGAATATAAGAAAGTTTTT 57.192 29.630 0.00 0.00 37.57 1.94
311 313 9.454859 CTCTGTCCCAGAATATAAGAAAGTTTT 57.545 33.333 0.00 0.00 40.18 2.43
312 314 8.049721 CCTCTGTCCCAGAATATAAGAAAGTTT 58.950 37.037 0.00 0.00 40.18 2.66
313 315 7.366011 CCCTCTGTCCCAGAATATAAGAAAGTT 60.366 40.741 0.00 0.00 40.18 2.66
314 316 6.100424 CCCTCTGTCCCAGAATATAAGAAAGT 59.900 42.308 0.00 0.00 40.18 2.66
315 317 6.327626 TCCCTCTGTCCCAGAATATAAGAAAG 59.672 42.308 0.00 0.00 40.18 2.62
316 318 6.209774 TCCCTCTGTCCCAGAATATAAGAAA 58.790 40.000 0.00 0.00 40.18 2.52
317 319 5.788430 TCCCTCTGTCCCAGAATATAAGAA 58.212 41.667 0.00 0.00 40.18 2.52
318 320 5.103043 ACTCCCTCTGTCCCAGAATATAAGA 60.103 44.000 0.00 0.00 40.18 2.10
319 321 5.151454 ACTCCCTCTGTCCCAGAATATAAG 58.849 45.833 0.00 0.00 40.18 1.73
320 322 5.157770 ACTCCCTCTGTCCCAGAATATAA 57.842 43.478 0.00 0.00 40.18 0.98
321 323 4.834406 ACTCCCTCTGTCCCAGAATATA 57.166 45.455 0.00 0.00 40.18 0.86
322 324 3.715648 ACTCCCTCTGTCCCAGAATAT 57.284 47.619 0.00 0.00 40.18 1.28
323 325 4.620086 TTACTCCCTCTGTCCCAGAATA 57.380 45.455 0.00 0.00 40.18 1.75
324 326 3.491766 TTACTCCCTCTGTCCCAGAAT 57.508 47.619 0.00 0.00 40.18 2.40
325 327 3.491766 ATTACTCCCTCTGTCCCAGAA 57.508 47.619 0.00 0.00 40.18 3.02
326 328 3.491766 AATTACTCCCTCTGTCCCAGA 57.508 47.619 0.00 0.00 38.25 3.86
327 329 5.896073 ATAAATTACTCCCTCTGTCCCAG 57.104 43.478 0.00 0.00 0.00 4.45
328 330 5.303589 CGTATAAATTACTCCCTCTGTCCCA 59.696 44.000 0.00 0.00 0.00 4.37
329 331 5.303845 ACGTATAAATTACTCCCTCTGTCCC 59.696 44.000 0.00 0.00 0.00 4.46
330 332 6.402456 ACGTATAAATTACTCCCTCTGTCC 57.598 41.667 0.00 0.00 0.00 4.02
331 333 6.264970 AGGACGTATAAATTACTCCCTCTGTC 59.735 42.308 0.00 0.00 0.00 3.51
332 334 6.134754 AGGACGTATAAATTACTCCCTCTGT 58.865 40.000 0.00 0.00 0.00 3.41
333 335 6.651975 AGGACGTATAAATTACTCCCTCTG 57.348 41.667 0.00 0.00 0.00 3.35
334 336 6.462628 GCAAGGACGTATAAATTACTCCCTCT 60.463 42.308 0.00 0.00 0.00 3.69
335 337 5.695363 GCAAGGACGTATAAATTACTCCCTC 59.305 44.000 0.00 0.00 0.00 4.30
336 338 5.454329 GGCAAGGACGTATAAATTACTCCCT 60.454 44.000 0.00 0.00 0.00 4.20
337 339 4.753610 GGCAAGGACGTATAAATTACTCCC 59.246 45.833 0.00 0.00 0.00 4.30
338 340 5.235831 GTGGCAAGGACGTATAAATTACTCC 59.764 44.000 0.00 0.00 0.00 3.85
339 341 5.813672 TGTGGCAAGGACGTATAAATTACTC 59.186 40.000 0.00 0.00 0.00 2.59
340 342 5.736813 TGTGGCAAGGACGTATAAATTACT 58.263 37.500 0.00 0.00 0.00 2.24
341 343 5.007332 CCTGTGGCAAGGACGTATAAATTAC 59.993 44.000 9.32 0.00 40.02 1.89
342 344 5.120399 CCTGTGGCAAGGACGTATAAATTA 58.880 41.667 9.32 0.00 40.02 1.40
359 454 2.051334 TTTTCCGATATGCCCTGTGG 57.949 50.000 0.00 0.00 0.00 4.17
373 468 3.503800 ACCCAGAGTACACCTTTTTCC 57.496 47.619 0.00 0.00 0.00 3.13
388 483 6.568869 TCAGTAACATTTTGTTGAAACCCAG 58.431 36.000 3.22 0.00 41.30 4.45
453 548 4.081406 TCAGCAATGCAGTTGTCCTTATT 58.919 39.130 8.35 0.00 40.07 1.40
459 554 2.745821 TCTGATCAGCAATGCAGTTGTC 59.254 45.455 18.36 1.13 40.07 3.18
460 555 2.786777 TCTGATCAGCAATGCAGTTGT 58.213 42.857 18.36 0.00 40.07 3.32
461 556 3.439129 TCTTCTGATCAGCAATGCAGTTG 59.561 43.478 18.36 0.00 40.90 3.16
463 558 3.008330 GTCTTCTGATCAGCAATGCAGT 58.992 45.455 18.36 0.00 0.00 4.40
464 559 3.271729 AGTCTTCTGATCAGCAATGCAG 58.728 45.455 18.36 0.00 0.00 4.41
465 560 3.345508 AGTCTTCTGATCAGCAATGCA 57.654 42.857 18.36 0.00 0.00 3.96
466 561 7.488187 TTATAAGTCTTCTGATCAGCAATGC 57.512 36.000 18.36 0.00 0.00 3.56
516 612 6.607198 TGGATTGGAGGGAATATGAGTTTTTC 59.393 38.462 0.00 0.00 0.00 2.29
521 617 4.977739 TCTTGGATTGGAGGGAATATGAGT 59.022 41.667 0.00 0.00 0.00 3.41
528 624 8.343787 ACTTATTTTATCTTGGATTGGAGGGAA 58.656 33.333 0.00 0.00 0.00 3.97
530 626 7.561356 ACACTTATTTTATCTTGGATTGGAGGG 59.439 37.037 0.00 0.00 0.00 4.30
536 632 8.806146 ACTGCAACACTTATTTTATCTTGGATT 58.194 29.630 0.00 0.00 0.00 3.01
543 854 7.007456 GCTCGAAACTGCAACACTTATTTTATC 59.993 37.037 0.00 0.00 0.00 1.75
551 862 1.668419 AGCTCGAAACTGCAACACTT 58.332 45.000 0.00 0.00 0.00 3.16
557 868 6.554334 AGTTTAAATTAGCTCGAAACTGCA 57.446 33.333 0.00 0.00 38.55 4.41
559 870 9.141400 ACTCTAGTTTAAATTAGCTCGAAACTG 57.859 33.333 11.78 9.57 39.86 3.16
576 887 9.242477 GTCGTAGTTTTGAACTAACTCTAGTTT 57.758 33.333 0.00 0.00 46.31 2.66
603 915 9.877178 CTGTACTACCTCAGATTCATAAAAAGT 57.123 33.333 0.00 0.00 34.02 2.66
609 921 9.132923 CCTAAACTGTACTACCTCAGATTCATA 57.867 37.037 0.00 0.00 35.84 2.15
611 923 7.179966 TCCTAAACTGTACTACCTCAGATTCA 58.820 38.462 0.00 0.00 35.84 2.57
612 924 7.642082 TCCTAAACTGTACTACCTCAGATTC 57.358 40.000 0.00 0.00 35.84 2.52
615 927 6.952358 ACAATCCTAAACTGTACTACCTCAGA 59.048 38.462 0.00 0.00 35.84 3.27
616 928 7.171630 ACAATCCTAAACTGTACTACCTCAG 57.828 40.000 0.00 0.00 37.65 3.35
617 929 8.654485 TTACAATCCTAAACTGTACTACCTCA 57.346 34.615 0.00 0.00 0.00 3.86
618 930 9.933723 TTTTACAATCCTAAACTGTACTACCTC 57.066 33.333 0.00 0.00 0.00 3.85
743 1076 3.282021 TGCTGCTTTGAAGAGTCAAACT 58.718 40.909 0.00 0.00 46.48 2.66
908 1242 1.067669 GAGAGAGCTGTGTGTGTGTGA 59.932 52.381 0.00 0.00 0.00 3.58
909 1243 1.068281 AGAGAGAGCTGTGTGTGTGTG 59.932 52.381 0.00 0.00 0.00 3.82
910 1244 1.339610 GAGAGAGAGCTGTGTGTGTGT 59.660 52.381 0.00 0.00 0.00 3.72
911 1245 1.612950 AGAGAGAGAGCTGTGTGTGTG 59.387 52.381 0.00 0.00 0.00 3.82
912 1246 1.885887 GAGAGAGAGAGCTGTGTGTGT 59.114 52.381 0.00 0.00 0.00 3.72
913 1247 2.161855 AGAGAGAGAGAGCTGTGTGTG 58.838 52.381 0.00 0.00 0.00 3.82
1091 1426 0.250901 CTGGTGGTGTTCTTGGGAGG 60.251 60.000 0.00 0.00 0.00 4.30
1092 1427 0.890996 GCTGGTGGTGTTCTTGGGAG 60.891 60.000 0.00 0.00 0.00 4.30
1093 1428 1.150536 GCTGGTGGTGTTCTTGGGA 59.849 57.895 0.00 0.00 0.00 4.37
1643 1978 1.669049 TATGGGTGTGCCTACCGTCG 61.669 60.000 0.93 0.00 41.79 5.12
1645 1980 0.251073 GTTATGGGTGTGCCTACCGT 59.749 55.000 0.93 0.00 41.79 4.83
1657 1992 3.355378 TGACAAGGCATGAAGTTATGGG 58.645 45.455 0.00 0.00 0.00 4.00
1726 2061 3.148279 GACCTGGATCGGCTCGGT 61.148 66.667 0.00 0.00 0.00 4.69
1727 2062 1.961180 AAAGACCTGGATCGGCTCGG 61.961 60.000 0.00 0.00 0.00 4.63
1728 2063 0.807667 CAAAGACCTGGATCGGCTCG 60.808 60.000 0.00 0.00 0.00 5.03
1762 2097 1.006102 AGACCTGCAGCACACGTAC 60.006 57.895 8.66 0.00 0.00 3.67
1875 2210 4.856607 CTCCTCCTCGTTCGCGCC 62.857 72.222 0.00 0.00 41.05 6.53
1876 2211 3.812019 TCTCCTCCTCGTTCGCGC 61.812 66.667 0.00 0.00 41.05 6.86
1877 2212 2.100603 GTCTCCTCCTCGTTCGCG 59.899 66.667 0.00 0.00 42.98 5.87
1878 2213 2.100603 CGTCTCCTCCTCGTTCGC 59.899 66.667 0.00 0.00 0.00 4.70
2253 2602 0.461961 ATTGACTGCCGGAGCTACTC 59.538 55.000 5.05 0.00 40.80 2.59
2254 2603 0.905357 AATTGACTGCCGGAGCTACT 59.095 50.000 5.05 0.00 40.80 2.57
2255 2604 1.291132 GAATTGACTGCCGGAGCTAC 58.709 55.000 5.05 0.00 40.80 3.58
2256 2605 0.901827 TGAATTGACTGCCGGAGCTA 59.098 50.000 5.05 0.00 40.80 3.32
2257 2606 0.392193 CTGAATTGACTGCCGGAGCT 60.392 55.000 5.05 0.00 40.80 4.09
2258 2607 0.674895 ACTGAATTGACTGCCGGAGC 60.675 55.000 5.05 0.00 40.48 4.70
2259 2608 1.363744 GACTGAATTGACTGCCGGAG 58.636 55.000 5.05 1.84 0.00 4.63
2260 2609 0.036388 GGACTGAATTGACTGCCGGA 60.036 55.000 5.05 0.00 0.00 5.14
2261 2610 1.361668 CGGACTGAATTGACTGCCGG 61.362 60.000 0.00 0.00 34.08 6.13
2262 2611 1.361668 CCGGACTGAATTGACTGCCG 61.362 60.000 0.00 0.00 37.20 5.69
2263 2612 1.648467 GCCGGACTGAATTGACTGCC 61.648 60.000 5.05 0.00 0.00 4.85
2264 2613 1.796796 GCCGGACTGAATTGACTGC 59.203 57.895 5.05 0.00 0.00 4.40
2265 2614 0.389817 TCGCCGGACTGAATTGACTG 60.390 55.000 5.05 0.00 0.00 3.51
2313 2680 2.262915 GTGCTGCTCTACTGCCGT 59.737 61.111 0.00 0.00 42.24 5.68
2562 2956 0.107214 TATTCTGCTGGGCCTTTCCG 60.107 55.000 4.53 0.00 34.94 4.30
2597 2991 1.227380 GGGCACGAGCATCTACCTG 60.227 63.158 7.26 0.00 44.61 4.00
2598 2992 1.050988 ATGGGCACGAGCATCTACCT 61.051 55.000 7.26 0.00 44.61 3.08
2599 2993 0.882042 CATGGGCACGAGCATCTACC 60.882 60.000 7.26 0.00 44.61 3.18
2601 2995 1.227645 GCATGGGCACGAGCATCTA 60.228 57.895 7.26 0.00 44.61 1.98
2602 2996 2.515523 GCATGGGCACGAGCATCT 60.516 61.111 7.26 0.00 44.61 2.90
2624 3027 2.977578 TCCTCCTCAAAGGACTCGG 58.022 57.895 0.00 0.00 40.06 4.63
2631 3034 3.924144 GATCGATGGATCCTCCTCAAAG 58.076 50.000 14.23 0.00 42.72 2.77
2653 3080 1.791204 CTCCACTGCAATCGATCGATG 59.209 52.381 29.99 22.79 34.70 3.84
2664 3091 0.111061 AAGCCATTGACTCCACTGCA 59.889 50.000 0.00 0.00 0.00 4.41
2711 3147 4.429522 TGCGACCATGGCAGGCAT 62.430 61.111 17.97 2.93 35.04 4.40
2738 3189 4.720902 CACACATGCAGCGGGGGA 62.721 66.667 0.00 0.00 0.00 4.81
2748 3199 0.664166 GCGGTGAAAAGGCACACATG 60.664 55.000 0.00 0.00 40.52 3.21
2796 3251 1.459450 CACTAATGGTGTTTCCGGGG 58.541 55.000 0.00 0.00 40.79 5.73
2815 3270 1.566018 GCGCACCTAATCATACGGGC 61.566 60.000 0.30 0.00 0.00 6.13
2860 3315 1.339291 GCAACAAGGAGAAAGCAAGCT 59.661 47.619 0.00 0.00 0.00 3.74
2861 3316 1.339291 AGCAACAAGGAGAAAGCAAGC 59.661 47.619 0.00 0.00 0.00 4.01
2862 3317 3.817647 ACTAGCAACAAGGAGAAAGCAAG 59.182 43.478 0.00 0.00 0.00 4.01
2886 3341 5.010112 TCTGTATCTGCCTGAATGCTAGTAC 59.990 44.000 0.00 0.00 0.00 2.73
2888 3343 3.963374 TCTGTATCTGCCTGAATGCTAGT 59.037 43.478 0.00 0.00 0.00 2.57
2892 3365 2.225963 GCATCTGTATCTGCCTGAATGC 59.774 50.000 0.00 0.00 32.15 3.56
2905 3378 6.482308 CAGTGAATCTGAATCATGCATCTGTA 59.518 38.462 0.00 0.00 46.27 2.74
2922 3395 1.127582 GCAGACGTTCAGCAGTGAATC 59.872 52.381 0.00 0.00 44.58 2.52
2923 3396 1.151668 GCAGACGTTCAGCAGTGAAT 58.848 50.000 0.00 0.00 44.58 2.57
2924 3397 0.179086 TGCAGACGTTCAGCAGTGAA 60.179 50.000 6.44 0.00 40.55 3.18
2925 3398 0.033920 ATGCAGACGTTCAGCAGTGA 59.966 50.000 14.25 0.00 42.10 3.41
2926 3399 0.165295 CATGCAGACGTTCAGCAGTG 59.835 55.000 14.25 9.71 42.10 3.66
2927 3400 0.033920 TCATGCAGACGTTCAGCAGT 59.966 50.000 14.25 3.10 42.10 4.40
2937 3410 2.223112 CGCATTGGTAGTTCATGCAGAC 60.223 50.000 0.00 0.00 38.07 3.51
2971 3444 1.153449 CAAGCATGGCATTGGCAGG 60.153 57.895 19.19 19.19 42.43 4.85
2973 3446 2.266372 GCAAGCATGGCATTGGCA 59.734 55.556 15.86 15.86 43.71 4.92
2974 3447 2.266372 TGCAAGCATGGCATTGGC 59.734 55.556 0.00 2.73 42.69 4.52
3000 3473 3.241067 TGGTTTAGCTAGCTTGTACCG 57.759 47.619 24.88 0.00 0.00 4.02
3006 3479 4.844349 TCCATCTTGGTTTAGCTAGCTT 57.156 40.909 24.88 7.25 39.03 3.74
3011 3484 4.487714 TCGAATCCATCTTGGTTTAGCT 57.512 40.909 0.00 0.00 39.03 3.32
3012 3485 5.066505 ACAATCGAATCCATCTTGGTTTAGC 59.933 40.000 0.00 0.00 39.03 3.09
3013 3486 6.683974 ACAATCGAATCCATCTTGGTTTAG 57.316 37.500 0.00 0.00 39.03 1.85
3014 3487 6.657117 TCAACAATCGAATCCATCTTGGTTTA 59.343 34.615 0.00 0.00 39.03 2.01
3015 3488 5.476599 TCAACAATCGAATCCATCTTGGTTT 59.523 36.000 0.00 0.00 39.03 3.27
3016 3489 5.009631 TCAACAATCGAATCCATCTTGGTT 58.990 37.500 0.00 0.00 39.03 3.67
3060 3539 7.991460 CCAGTATCTGCATTCATCACCATATAT 59.009 37.037 0.00 0.00 0.00 0.86
3061 3540 7.333323 CCAGTATCTGCATTCATCACCATATA 58.667 38.462 0.00 0.00 0.00 0.86
3062 3541 6.178324 CCAGTATCTGCATTCATCACCATAT 58.822 40.000 0.00 0.00 0.00 1.78
3259 3738 4.569180 ATCATTCCCCCGCCGCTG 62.569 66.667 0.00 0.00 0.00 5.18
3260 3739 4.256180 GATCATTCCCCCGCCGCT 62.256 66.667 0.00 0.00 0.00 5.52
3271 3750 2.700540 GGAGGGGTAGAAGGGGATCATT 60.701 54.545 0.00 0.00 0.00 2.57
3445 3924 1.808945 GATCAGTTGAACTGCTGGTGG 59.191 52.381 19.99 0.00 45.54 4.61
3479 3958 1.993370 GAAGATATGTATCGTGCCGGC 59.007 52.381 22.73 22.73 37.76 6.13
3480 3959 2.251040 CGAAGATATGTATCGTGCCGG 58.749 52.381 0.00 0.00 37.76 6.13
3491 3970 5.496387 GTCATTGACTGCAACGAAGATATG 58.504 41.667 9.59 0.00 36.72 1.78
3499 3978 1.136529 CAGACGTCATTGACTGCAACG 60.137 52.381 19.50 3.44 36.72 4.10
3590 4069 2.503375 CGTCTCCACCGTACGCAC 60.503 66.667 10.49 0.00 0.00 5.34
3591 4070 3.740397 CCGTCTCCACCGTACGCA 61.740 66.667 10.49 0.00 35.36 5.24
3592 4071 3.273080 AACCGTCTCCACCGTACGC 62.273 63.158 10.49 0.00 35.36 4.42
3634 4113 2.648059 CTCATGGATGAACTGAACCCC 58.352 52.381 0.00 0.00 36.18 4.95
3635 4114 2.025887 ACCTCATGGATGAACTGAACCC 60.026 50.000 0.00 0.00 36.18 4.11
3636 4115 3.012518 CACCTCATGGATGAACTGAACC 58.987 50.000 0.00 0.00 36.18 3.62
3657 4136 1.476891 TCACCATCGTCTTCAGTAGGC 59.523 52.381 0.00 0.00 0.00 3.93
3695 4174 3.569701 TCATCAACTCGATCGATCCATGA 59.430 43.478 19.78 18.70 29.21 3.07
3696 4175 3.905784 TCATCAACTCGATCGATCCATG 58.094 45.455 19.78 16.90 29.21 3.66
3697 4176 4.219288 TCATCATCAACTCGATCGATCCAT 59.781 41.667 19.78 5.76 29.21 3.41
3698 4177 3.569701 TCATCATCAACTCGATCGATCCA 59.430 43.478 19.78 6.16 29.21 3.41
3699 4178 4.166187 TCATCATCAACTCGATCGATCC 57.834 45.455 19.78 2.50 29.21 3.36
3700 4179 7.008176 CACTATTCATCATCAACTCGATCGATC 59.992 40.741 19.78 15.68 29.21 3.69
3729 4208 0.497301 TTCCCCTACAAGTACCCCCA 59.503 55.000 0.00 0.00 0.00 4.96
3730 4209 1.903043 ATTCCCCTACAAGTACCCCC 58.097 55.000 0.00 0.00 0.00 5.40
3731 4210 4.042884 ACTTATTCCCCTACAAGTACCCC 58.957 47.826 0.00 0.00 29.67 4.95
3732 4211 4.102210 GGACTTATTCCCCTACAAGTACCC 59.898 50.000 0.00 0.00 38.70 3.69
3738 4217 2.502538 CACCGGACTTATTCCCCTACAA 59.497 50.000 9.46 0.00 42.27 2.41
3892 4377 6.540914 ACCATTAACCTATACAACAACGGATG 59.459 38.462 0.00 0.00 0.00 3.51
4084 4573 9.362151 TGTAGTCCTTTGGAAAAATGTATTTCT 57.638 29.630 0.00 0.00 38.92 2.52
4086 4575 9.927668 CATGTAGTCCTTTGGAAAAATGTATTT 57.072 29.630 0.00 0.00 31.38 1.40
4093 4582 7.286546 TCAATCACATGTAGTCCTTTGGAAAAA 59.713 33.333 0.00 0.00 31.38 1.94
4134 4623 0.250727 GTGGGGCACAAAGTAGCTGA 60.251 55.000 0.00 0.00 34.08 4.26
4135 4624 1.244019 GGTGGGGCACAAAGTAGCTG 61.244 60.000 0.00 0.00 35.86 4.24
4146 4636 1.347050 CAAATGTTCAATGGTGGGGCA 59.653 47.619 0.00 0.00 0.00 5.36
4151 4641 4.121317 ACTTGTGCAAATGTTCAATGGTG 58.879 39.130 0.00 0.00 0.00 4.17
4152 4642 4.405116 ACTTGTGCAAATGTTCAATGGT 57.595 36.364 0.00 0.00 0.00 3.55
4154 4644 6.408611 CGAAAAACTTGTGCAAATGTTCAATG 59.591 34.615 8.49 0.00 0.00 2.82
4155 4645 6.456718 CCGAAAAACTTGTGCAAATGTTCAAT 60.457 34.615 8.49 0.00 0.00 2.57
4157 4647 4.328440 CCGAAAAACTTGTGCAAATGTTCA 59.672 37.500 8.49 0.00 0.00 3.18
4158 4648 4.564769 TCCGAAAAACTTGTGCAAATGTTC 59.435 37.500 8.49 0.00 0.00 3.18
4176 4668 8.425577 TGTTTAGAAAATTTTGCATTTCCGAA 57.574 26.923 8.47 0.74 36.44 4.30
4178 4670 8.334632 ACTTGTTTAGAAAATTTTGCATTTCCG 58.665 29.630 8.47 0.00 36.44 4.30
4264 4756 6.489603 TGGGTCAATTGTAGTACATCCATTT 58.510 36.000 3.28 0.00 0.00 2.32
4269 4761 5.812642 CACTCTGGGTCAATTGTAGTACATC 59.187 44.000 3.28 0.00 0.00 3.06
4275 4767 5.491070 TCATTCACTCTGGGTCAATTGTAG 58.509 41.667 5.13 0.96 0.00 2.74
4276 4768 5.497464 TCATTCACTCTGGGTCAATTGTA 57.503 39.130 5.13 0.00 0.00 2.41
4282 4774 4.437682 AAGTTTCATTCACTCTGGGTCA 57.562 40.909 0.00 0.00 0.00 4.02
4284 4776 7.559897 TCTTTAAAAGTTTCATTCACTCTGGGT 59.440 33.333 0.00 0.00 0.00 4.51
4285 4777 7.940850 TCTTTAAAAGTTTCATTCACTCTGGG 58.059 34.615 0.00 0.00 0.00 4.45
4305 4799 8.178964 CGAAACCCGAACATATTTGATTCTTTA 58.821 33.333 0.00 0.00 41.76 1.85
4307 4801 6.404293 CCGAAACCCGAACATATTTGATTCTT 60.404 38.462 0.00 0.00 41.76 2.52
4309 4803 5.163693 ACCGAAACCCGAACATATTTGATTC 60.164 40.000 0.00 0.00 41.76 2.52
4315 4809 3.337694 TCACCGAAACCCGAACATATT 57.662 42.857 0.00 0.00 41.76 1.28
4317 4811 4.675976 ATATCACCGAAACCCGAACATA 57.324 40.909 0.00 0.00 41.76 2.29
4319 4813 3.337694 AATATCACCGAAACCCGAACA 57.662 42.857 0.00 0.00 41.76 3.18
4330 4824 3.065371 GTGCCTTCCAAGAAATATCACCG 59.935 47.826 0.00 0.00 0.00 4.94
4331 4825 4.273318 AGTGCCTTCCAAGAAATATCACC 58.727 43.478 0.00 0.00 0.00 4.02
4332 4826 4.336713 GGAGTGCCTTCCAAGAAATATCAC 59.663 45.833 0.00 0.00 37.20 3.06
4333 4827 4.228210 AGGAGTGCCTTCCAAGAAATATCA 59.772 41.667 6.39 0.00 43.90 2.15
4334 4828 4.786425 AGGAGTGCCTTCCAAGAAATATC 58.214 43.478 6.39 0.00 43.90 1.63
4335 4829 4.870021 AGGAGTGCCTTCCAAGAAATAT 57.130 40.909 6.39 0.00 43.90 1.28
4346 4840 6.159255 CATTATGGAATGGAAGGAGTGCCTT 61.159 44.000 0.00 0.00 44.16 4.35
4347 4841 4.690818 CATTATGGAATGGAAGGAGTGCCT 60.691 45.833 0.00 0.00 41.75 4.75
4348 4842 3.297134 TTATGGAATGGAAGGAGTGCC 57.703 47.619 0.00 0.00 0.00 5.01
4349 4843 4.210331 ACATTATGGAATGGAAGGAGTGC 58.790 43.478 0.00 0.00 45.83 4.40
4391 4885 2.366590 ACTCCCTCCGTAAGACGTTTTT 59.633 45.455 0.00 0.00 40.58 1.94
4392 4886 1.966354 ACTCCCTCCGTAAGACGTTTT 59.034 47.619 0.00 0.00 40.58 2.43
4393 4887 1.625511 ACTCCCTCCGTAAGACGTTT 58.374 50.000 0.00 0.00 40.58 3.60
4394 4888 2.496899 TACTCCCTCCGTAAGACGTT 57.503 50.000 0.00 0.00 40.58 3.99
4395 4889 2.496899 TTACTCCCTCCGTAAGACGT 57.503 50.000 0.00 0.00 40.58 4.34
4396 4890 5.505173 TTAATTACTCCCTCCGTAAGACG 57.495 43.478 0.00 0.00 42.11 4.18
4397 4891 6.704937 CCAATTAATTACTCCCTCCGTAAGAC 59.295 42.308 0.00 0.00 43.02 3.01
4398 4892 6.612456 TCCAATTAATTACTCCCTCCGTAAGA 59.388 38.462 0.00 0.00 43.02 2.10
4399 4893 6.823497 TCCAATTAATTACTCCCTCCGTAAG 58.177 40.000 0.00 0.00 31.12 2.34
4400 4894 6.811634 TCCAATTAATTACTCCCTCCGTAA 57.188 37.500 0.00 0.00 0.00 3.18
4401 4895 6.555738 TCATCCAATTAATTACTCCCTCCGTA 59.444 38.462 0.00 0.00 0.00 4.02
4402 4896 5.368523 TCATCCAATTAATTACTCCCTCCGT 59.631 40.000 0.00 0.00 0.00 4.69
4403 4897 5.865085 TCATCCAATTAATTACTCCCTCCG 58.135 41.667 0.00 0.00 0.00 4.63
4404 4898 9.981460 ATATTCATCCAATTAATTACTCCCTCC 57.019 33.333 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.