Multiple sequence alignment - TraesCS4A01G016400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G016400 chr4A 100.000 6870 0 0 1 6870 11182282 11189151 0.000000e+00 12687.0
1 TraesCS4A01G016400 chr4D 92.193 2946 142 43 2969 5870 457504132 457501231 0.000000e+00 4085.0
2 TraesCS4A01G016400 chr4D 88.053 3005 198 69 1 2927 457507138 457504217 0.000000e+00 3411.0
3 TraesCS4A01G016400 chr4D 91.954 522 23 6 5922 6434 457501218 457500707 0.000000e+00 713.0
4 TraesCS4A01G016400 chr4D 91.160 362 22 6 6073 6434 457498148 457497797 3.730000e-132 483.0
5 TraesCS4A01G016400 chr4B 89.870 2458 157 39 1 2399 571474787 571472363 0.000000e+00 3075.0
6 TraesCS4A01G016400 chr4B 90.808 2252 98 41 4491 6701 571470360 571468177 0.000000e+00 2911.0
7 TraesCS4A01G016400 chr4B 91.731 1040 49 12 3423 4441 571471386 571470363 0.000000e+00 1410.0
8 TraesCS4A01G016400 chr4B 91.224 433 29 3 2969 3393 571471815 571471384 1.280000e-161 580.0
9 TraesCS4A01G016400 chr4B 94.624 279 9 3 2502 2780 571472254 571471982 1.770000e-115 427.0
10 TraesCS4A01G016400 chr4B 85.350 157 22 1 6702 6857 53190626 53190782 1.980000e-35 161.0
11 TraesCS4A01G016400 chr7A 84.069 408 39 11 2511 2899 170288198 170288598 3.030000e-98 370.0
12 TraesCS4A01G016400 chr7A 87.135 171 17 5 6702 6870 35593699 35593532 9.100000e-44 189.0
13 TraesCS4A01G016400 chr7B 88.235 170 16 4 6702 6870 49608898 49609064 4.200000e-47 200.0
14 TraesCS4A01G016400 chr1D 87.059 170 19 3 6702 6870 64115332 64115165 9.100000e-44 189.0
15 TraesCS4A01G016400 chr1D 85.294 170 23 2 6702 6870 86114839 86114671 2.550000e-39 174.0
16 TraesCS4A01G016400 chr1D 93.478 46 3 0 4444 4489 333492168 333492213 1.240000e-07 69.4
17 TraesCS4A01G016400 chr2B 86.047 172 18 6 6701 6870 45036407 45036240 5.470000e-41 180.0
18 TraesCS4A01G016400 chr3D 87.261 157 18 2 6716 6870 41428750 41428594 1.970000e-40 178.0
19 TraesCS4A01G016400 chr3D 84.211 171 24 3 6702 6870 47601005 47601174 5.510000e-36 163.0
20 TraesCS4A01G016400 chr7D 84.024 169 24 3 6702 6870 440005490 440005325 7.130000e-35 159.0
21 TraesCS4A01G016400 chr1B 84.177 158 11 1 3828 3971 6714117 6713960 2.580000e-29 141.0
22 TraesCS4A01G016400 chr1B 84.177 158 11 1 3828 3971 6718503 6718346 2.580000e-29 141.0
23 TraesCS4A01G016400 chr1B 83.544 158 12 1 3828 3971 6705284 6705127 1.200000e-27 135.0
24 TraesCS4A01G016400 chr1B 82.911 158 13 1 3828 3971 6709701 6709544 5.590000e-26 130.0
25 TraesCS4A01G016400 chr1B 82.278 158 14 1 3828 3971 6701107 6700950 2.600000e-24 124.0
26 TraesCS4A01G016400 chr1B 94.444 72 4 0 3828 3899 6721662 6721591 2.030000e-20 111.0
27 TraesCS4A01G016400 chr1B 94.444 72 4 0 3828 3899 6725258 6725187 2.030000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G016400 chr4A 11182282 11189151 6869 False 12687.0 12687 100.0000 1 6870 1 chr4A.!!$F1 6869
1 TraesCS4A01G016400 chr4D 457497797 457507138 9341 True 2173.0 4085 90.8400 1 6434 4 chr4D.!!$R1 6433
2 TraesCS4A01G016400 chr4B 571468177 571474787 6610 True 1680.6 3075 91.6514 1 6701 5 chr4B.!!$R1 6700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 624 0.037697 TACTACACAAGTGCGCCAGG 60.038 55.0 4.18 0.00 39.39 4.45 F
647 665 0.384309 GTGATGGATAGCACGGACGA 59.616 55.0 0.00 0.00 33.04 4.20 F
1823 1895 0.246635 TTCTCGTGTCAAGGCTAGCC 59.753 55.0 27.19 27.19 0.00 3.93 F
2633 2756 0.178981 ATGGGTAGGTGGATGCATGC 60.179 55.0 11.82 11.82 0.00 4.06 F
2707 2830 0.106569 TTGCCTGGCCATATGGAGTG 60.107 55.0 26.47 12.81 37.39 3.51 F
4453 4661 0.033306 ACTACTCCTTCCCTCCGTCC 60.033 60.0 0.00 0.00 0.00 4.79 F
4454 4662 0.033405 CTACTCCTTCCCTCCGTCCA 60.033 60.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1848 0.243907 GAGAAGCTGCACGTCCTACA 59.756 55.0 1.02 0.00 0.00 2.74 R
2482 2605 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.0 0.00 0.00 0.00 4.57 R
2670 2793 0.106519 AAGTCCACTTGCCAAGCTGT 60.107 50.0 3.88 0.00 34.38 4.40 R
3491 3678 0.250513 GTCTGCGTCTTCCCCATCTT 59.749 55.0 0.00 0.00 0.00 2.40 R
4643 4862 0.173481 TCTCCTTGGCGAAGATCACG 59.827 55.0 10.40 7.74 0.00 4.35 R
5393 5637 0.035056 ATCAAGTGGCGGAAGGGAAG 60.035 55.0 0.00 0.00 0.00 3.46 R
6268 6560 0.110238 CATCCAAAACAGTGCGTCGG 60.110 55.0 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.152881 AGGAATCGCCAATGGGAGC 60.153 57.895 0.00 0.00 40.02 4.70
28 29 2.274104 GCCAATGGGAGCGGGTTA 59.726 61.111 0.00 0.00 35.59 2.85
58 61 3.069016 TGTTACCTGCAGAGACGAAGAAA 59.931 43.478 17.39 0.00 0.00 2.52
59 62 2.910688 ACCTGCAGAGACGAAGAAAA 57.089 45.000 17.39 0.00 0.00 2.29
66 69 3.804873 GCAGAGACGAAGAAAAGAACTGT 59.195 43.478 0.00 0.00 0.00 3.55
91 94 0.179062 CTTCTGCTCTCCGGAATGGG 60.179 60.000 5.23 0.00 38.14 4.00
110 113 1.115326 GGGGATAGGTTGGGCAATGC 61.115 60.000 0.00 0.00 0.00 3.56
122 125 1.810853 GCAATGCGATTGGCCAACC 60.811 57.895 23.27 11.09 42.61 3.77
140 143 1.445410 CGAGGCGACCGATTGTTCA 60.445 57.895 0.00 0.00 0.00 3.18
155 158 2.929641 TGTTCAGATGAGGCAACAACA 58.070 42.857 0.00 0.00 41.41 3.33
157 160 1.511850 TCAGATGAGGCAACAACACG 58.488 50.000 0.00 0.00 41.41 4.49
190 193 0.323360 CATCCACGGGAAACATGGGT 60.323 55.000 0.00 0.00 38.38 4.51
222 225 3.189287 GCAGAGTTCAAATGACGATGGTT 59.811 43.478 0.00 0.00 0.00 3.67
244 247 0.163788 CACATTTGTCTCGTGCGGAC 59.836 55.000 0.00 0.00 0.00 4.79
280 283 1.041447 ACGGATCGGGGAATTCGAGT 61.041 55.000 5.18 0.00 40.09 4.18
403 412 3.103742 TCAAATAGATGCCCCAAAACCC 58.896 45.455 0.00 0.00 0.00 4.11
470 479 7.119262 GTGCACTACAATAGATAAACCAAGTGT 59.881 37.037 10.32 0.00 35.43 3.55
554 563 8.517878 CAGGATATGGCCTCATTAAAAACATAG 58.482 37.037 3.32 0.00 35.66 2.23
555 564 7.177392 AGGATATGGCCTCATTAAAAACATAGC 59.823 37.037 3.32 0.00 30.76 2.97
556 565 7.039784 GGATATGGCCTCATTAAAAACATAGCA 60.040 37.037 3.32 0.00 34.96 3.49
607 619 4.106029 AGTACCATACTACACAAGTGCG 57.894 45.455 0.00 0.00 39.39 5.34
612 624 0.037697 TACTACACAAGTGCGCCAGG 60.038 55.000 4.18 0.00 39.39 4.45
613 625 2.031919 TACACAAGTGCGCCAGGG 59.968 61.111 4.18 0.00 0.00 4.45
647 665 0.384309 GTGATGGATAGCACGGACGA 59.616 55.000 0.00 0.00 33.04 4.20
648 666 0.384309 TGATGGATAGCACGGACGAC 59.616 55.000 0.00 0.00 0.00 4.34
678 696 1.077716 AGGCCGCATCCTGGTTAAC 60.078 57.895 0.00 0.00 34.56 2.01
811 846 1.990160 TTCCCTCACACCACACCACC 61.990 60.000 0.00 0.00 0.00 4.61
813 848 2.113139 CTCACACCACACCACCCC 59.887 66.667 0.00 0.00 0.00 4.95
814 849 2.367648 TCACACCACACCACCCCT 60.368 61.111 0.00 0.00 0.00 4.79
815 850 2.113139 CACACCACACCACCCCTC 59.887 66.667 0.00 0.00 0.00 4.30
816 851 2.039831 ACACCACACCACCCCTCT 60.040 61.111 0.00 0.00 0.00 3.69
836 871 0.930310 CTCTCTCTCTCTCACTCGCG 59.070 60.000 0.00 0.00 0.00 5.87
876 911 1.671901 CTCTTCCTCCTCCCGTCAGC 61.672 65.000 0.00 0.00 0.00 4.26
914 949 1.854163 GATCCGATCGACGTCCTCCC 61.854 65.000 18.66 0.00 40.78 4.30
966 1014 0.643820 GTTGATAGGCGAACGAACGG 59.356 55.000 0.00 0.00 0.00 4.44
969 1017 3.728279 ATAGGCGAACGAACGGGGC 62.728 63.158 0.00 0.53 0.00 5.80
1217 1268 1.669760 ACACGTACATGCAACCCGG 60.670 57.895 0.00 0.00 0.00 5.73
1262 1313 2.276409 GAGGCCATGTCCATGCCA 59.724 61.111 5.01 0.00 37.42 4.92
1372 1440 7.437862 TGTTTTGCTTTCTAAATAAACCTGCAG 59.562 33.333 6.78 6.78 0.00 4.41
1389 1457 2.037772 TGCAGAGGTCTCAAGAGAAACC 59.962 50.000 0.57 0.74 39.48 3.27
1414 1482 8.445493 CCTAAAAGATGCCTGCAAAATTTTAAG 58.555 33.333 2.44 4.64 0.00 1.85
1448 1519 3.696051 TCATAATTTTCTGTGCCAGCTCC 59.304 43.478 0.00 0.00 0.00 4.70
1456 1527 0.991146 TGTGCCAGCTCCTATTTCCA 59.009 50.000 0.00 0.00 0.00 3.53
1459 1530 2.130193 TGCCAGCTCCTATTTCCATCT 58.870 47.619 0.00 0.00 0.00 2.90
1461 1532 2.158696 GCCAGCTCCTATTTCCATCTGT 60.159 50.000 0.00 0.00 0.00 3.41
1469 1540 6.139679 TCCTATTTCCATCTGTGAACCTTT 57.860 37.500 0.00 0.00 0.00 3.11
1470 1541 7.265599 TCCTATTTCCATCTGTGAACCTTTA 57.734 36.000 0.00 0.00 0.00 1.85
1477 1548 5.250543 TCCATCTGTGAACCTTTATTCTCCA 59.749 40.000 0.00 0.00 0.00 3.86
1480 1551 4.943705 TCTGTGAACCTTTATTCTCCATGC 59.056 41.667 0.00 0.00 0.00 4.06
1515 1586 5.642919 TGAAGTTTGTGCAGCTTTCATTTTT 59.357 32.000 0.00 0.00 0.00 1.94
1547 1618 5.607119 TTTGAAACGGTAGATTCAAGCTC 57.393 39.130 6.58 0.00 45.47 4.09
1551 1622 3.678056 ACGGTAGATTCAAGCTCAACA 57.322 42.857 0.00 0.00 0.00 3.33
1552 1623 3.326747 ACGGTAGATTCAAGCTCAACAC 58.673 45.455 0.00 0.00 0.00 3.32
1553 1624 3.244078 ACGGTAGATTCAAGCTCAACACA 60.244 43.478 0.00 0.00 0.00 3.72
1554 1625 3.369147 CGGTAGATTCAAGCTCAACACAG 59.631 47.826 0.00 0.00 0.00 3.66
1555 1626 3.126000 GGTAGATTCAAGCTCAACACAGC 59.874 47.826 0.00 0.00 39.99 4.40
1573 1644 5.931146 ACACAGCAGTTTCTATTCAGAGAAG 59.069 40.000 0.00 0.00 36.80 2.85
1595 1666 2.069273 GTGAGGTTTGACCGAGATGTG 58.931 52.381 0.00 0.00 44.90 3.21
1613 1684 4.014847 TGTGAAGCTTGTTCGTTTCTTG 57.985 40.909 2.10 0.00 0.00 3.02
1676 1748 3.302365 TTAGTAAGTACACGTGTGGCC 57.698 47.619 30.83 17.61 34.19 5.36
1718 1790 8.410912 TCTATTTTCGTATCCTTCGAGATCAAA 58.589 33.333 0.00 0.00 38.52 2.69
1776 1848 6.628175 GCTCGTATATATGATGGTGTGGTCAT 60.628 42.308 5.11 0.00 38.53 3.06
1783 1855 2.236146 TGATGGTGTGGTCATGTAGGAC 59.764 50.000 0.00 0.00 37.06 3.85
1821 1893 3.443037 CATCTTCTCGTGTCAAGGCTAG 58.557 50.000 0.00 0.00 0.00 3.42
1822 1894 1.202582 TCTTCTCGTGTCAAGGCTAGC 59.797 52.381 6.04 6.04 0.00 3.42
1823 1895 0.246635 TTCTCGTGTCAAGGCTAGCC 59.753 55.000 27.19 27.19 0.00 3.93
1835 1907 2.969628 AGGCTAGCCATCTAGTGTCAT 58.030 47.619 34.70 7.25 43.30 3.06
1887 1960 5.343307 AAAAGCCTCAATTTTCTGTGTGT 57.657 34.783 0.00 0.00 0.00 3.72
1909 1982 4.272504 GTGCAAAAAGCCTAAAACCTTTCC 59.727 41.667 0.00 0.00 44.83 3.13
1930 2003 1.334960 GCACACCAACTTCAATCCACG 60.335 52.381 0.00 0.00 0.00 4.94
1934 2007 1.142060 ACCAACTTCAATCCACGGACA 59.858 47.619 0.00 0.00 0.00 4.02
1935 2008 2.224769 ACCAACTTCAATCCACGGACAT 60.225 45.455 0.00 0.00 0.00 3.06
1937 2010 4.199310 CCAACTTCAATCCACGGACATAT 58.801 43.478 0.00 0.00 0.00 1.78
1949 2022 5.421056 TCCACGGACATATAGAAGTCAAACT 59.579 40.000 0.00 0.00 36.50 2.66
1960 2033 1.915141 AGTCAAACTCCCAAGCCATG 58.085 50.000 0.00 0.00 0.00 3.66
1962 2035 0.899717 TCAAACTCCCAAGCCATGCC 60.900 55.000 0.00 0.00 0.00 4.40
2008 2094 4.703575 CACCATCACCTTTGTCTGATGAAT 59.296 41.667 8.83 0.00 44.51 2.57
2114 2204 2.551459 GGCAACATCATGCTACATCCTC 59.449 50.000 0.00 0.00 45.68 3.71
2125 2215 3.118847 TGCTACATCCTCTTCTTCTGCTG 60.119 47.826 0.00 0.00 0.00 4.41
2171 2261 2.785868 GCACTCCTTACATGCTGGG 58.214 57.895 0.00 0.00 36.40 4.45
2296 2387 2.028567 GGCCTGATAGGGAAATCTCGAG 60.029 54.545 5.93 5.93 35.37 4.04
2363 2458 4.704057 AGACGAGGAATTAGTACGGTCTTT 59.296 41.667 0.00 0.00 0.00 2.52
2375 2470 4.569564 AGTACGGTCTTTGTTTCAGTTCAC 59.430 41.667 0.00 0.00 0.00 3.18
2376 2471 3.340034 ACGGTCTTTGTTTCAGTTCACA 58.660 40.909 0.00 0.00 0.00 3.58
2378 2473 3.695816 GGTCTTTGTTTCAGTTCACAGC 58.304 45.455 0.00 0.00 0.00 4.40
2384 2479 2.158623 TGTTTCAGTTCACAGCCCTGAT 60.159 45.455 1.69 0.00 35.32 2.90
2391 2486 0.833287 TCACAGCCCTGATAAGGAGC 59.167 55.000 0.00 0.00 0.00 4.70
2399 2494 3.257127 GCCCTGATAAGGAGCACTAGTAG 59.743 52.174 0.00 0.00 0.00 2.57
2400 2495 4.730966 CCCTGATAAGGAGCACTAGTAGA 58.269 47.826 3.59 0.00 0.00 2.59
2402 2497 5.242838 CCCTGATAAGGAGCACTAGTAGAAG 59.757 48.000 3.59 0.00 0.00 2.85
2403 2498 5.278758 CCTGATAAGGAGCACTAGTAGAAGC 60.279 48.000 3.59 7.65 0.00 3.86
2404 2499 4.585162 TGATAAGGAGCACTAGTAGAAGCC 59.415 45.833 3.59 0.00 0.00 4.35
2411 2506 4.023980 AGCACTAGTAGAAGCCATGTGTA 58.976 43.478 3.59 0.00 0.00 2.90
2414 2509 5.817816 GCACTAGTAGAAGCCATGTGTATTT 59.182 40.000 3.59 0.00 0.00 1.40
2415 2510 6.238211 GCACTAGTAGAAGCCATGTGTATTTG 60.238 42.308 3.59 0.00 0.00 2.32
2416 2511 6.818644 CACTAGTAGAAGCCATGTGTATTTGT 59.181 38.462 3.59 0.00 0.00 2.83
2417 2512 7.979537 CACTAGTAGAAGCCATGTGTATTTGTA 59.020 37.037 3.59 0.00 0.00 2.41
2418 2513 7.980099 ACTAGTAGAAGCCATGTGTATTTGTAC 59.020 37.037 3.59 0.00 0.00 2.90
2421 2516 4.870426 AGAAGCCATGTGTATTTGTACGAG 59.130 41.667 0.00 0.00 0.00 4.18
2422 2517 4.202245 AGCCATGTGTATTTGTACGAGT 57.798 40.909 0.00 0.00 0.00 4.18
2423 2518 5.333299 AGCCATGTGTATTTGTACGAGTA 57.667 39.130 0.00 0.00 0.00 2.59
2424 2519 5.107133 AGCCATGTGTATTTGTACGAGTAC 58.893 41.667 8.49 8.49 36.63 2.73
2427 2522 6.921857 GCCATGTGTATTTGTACGAGTACTAT 59.078 38.462 14.80 9.74 37.00 2.12
2429 2524 8.132995 CCATGTGTATTTGTACGAGTACTATGA 58.867 37.037 21.52 3.69 37.00 2.15
2432 2555 8.179615 TGTGTATTTGTACGAGTACTATGAGTG 58.820 37.037 14.80 0.00 37.00 3.51
2448 2571 4.864916 TGAGTGTATCCGTACGTAGAAC 57.135 45.455 15.21 7.35 33.36 3.01
2470 2593 5.784177 ACGAAGTGTACTTGATTGATCAGT 58.216 37.500 1.35 0.00 42.51 3.41
2490 2613 2.977456 GGTCCATGCGCACACACA 60.977 61.111 14.90 0.00 0.00 3.72
2491 2614 2.252260 GTCCATGCGCACACACAC 59.748 61.111 14.90 1.02 0.00 3.82
2492 2615 2.203126 TCCATGCGCACACACACA 60.203 55.556 14.90 0.00 0.00 3.72
2493 2616 2.051076 CCATGCGCACACACACAC 60.051 61.111 14.90 0.00 0.00 3.82
2494 2617 2.714387 CATGCGCACACACACACA 59.286 55.556 14.90 0.00 0.00 3.72
2495 2618 1.655046 CATGCGCACACACACACAC 60.655 57.895 14.90 0.00 0.00 3.82
2496 2619 2.111582 ATGCGCACACACACACACA 61.112 52.632 14.90 0.00 0.00 3.72
2497 2620 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
2498 2621 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
2499 2622 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2500 2623 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
2501 2624 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
2502 2625 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2503 2626 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2504 2627 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2505 2628 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2506 2629 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2507 2630 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2508 2631 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2509 2632 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2579 2702 7.285172 TGGATACATACAACAATTTCATCCTGG 59.715 37.037 0.00 0.00 46.17 4.45
2630 2753 1.212688 CAAGATGGGTAGGTGGATGCA 59.787 52.381 0.00 0.00 0.00 3.96
2631 2754 1.825105 AGATGGGTAGGTGGATGCAT 58.175 50.000 0.00 0.00 0.00 3.96
2632 2755 1.422781 AGATGGGTAGGTGGATGCATG 59.577 52.381 2.46 0.00 0.00 4.06
2633 2756 0.178981 ATGGGTAGGTGGATGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
2634 2757 1.227102 GGGTAGGTGGATGCATGCA 59.773 57.895 25.04 25.04 0.00 3.96
2635 2758 0.178981 GGGTAGGTGGATGCATGCAT 60.179 55.000 32.66 32.66 39.69 3.96
2636 2759 0.956633 GGTAGGTGGATGCATGCATG 59.043 55.000 36.73 22.70 36.70 4.06
2659 2782 5.048573 TGCATGCATACATCATGGTCAATAC 60.049 40.000 18.46 0.00 41.08 1.89
2686 2809 3.931907 ATATACAGCTTGGCAAGTGGA 57.068 42.857 26.71 19.90 0.00 4.02
2707 2830 0.106569 TTGCCTGGCCATATGGAGTG 60.107 55.000 26.47 12.81 37.39 3.51
2797 2921 3.664495 CACAGTTGCAGCAGAGGG 58.336 61.111 2.55 0.00 0.00 4.30
2852 2976 3.036429 GCTGAGGGTACAGGGGCTG 62.036 68.421 0.00 0.00 38.22 4.85
2877 3001 5.965922 TCGAGCTTCAGTTTTCATATCTGA 58.034 37.500 0.00 0.00 36.59 3.27
2924 3048 4.340617 GTGTATGGATCAGGGGAACAAAA 58.659 43.478 0.00 0.00 0.00 2.44
2932 3056 2.241176 TCAGGGGAACAAAACTGTCACT 59.759 45.455 0.00 0.00 32.92 3.41
2934 3058 4.104102 TCAGGGGAACAAAACTGTCACTAT 59.896 41.667 0.00 0.00 32.92 2.12
2935 3059 4.216257 CAGGGGAACAAAACTGTCACTATG 59.784 45.833 0.00 0.00 0.00 2.23
2936 3060 3.506067 GGGGAACAAAACTGTCACTATGG 59.494 47.826 0.00 0.00 0.00 2.74
2938 3062 4.215613 GGGAACAAAACTGTCACTATGGTC 59.784 45.833 0.00 0.00 0.00 4.02
2939 3063 4.084013 GGAACAAAACTGTCACTATGGTCG 60.084 45.833 0.00 0.00 0.00 4.79
2940 3064 4.067972 ACAAAACTGTCACTATGGTCGT 57.932 40.909 0.00 0.00 0.00 4.34
2945 3069 2.488545 ACTGTCACTATGGTCGTCAGTC 59.511 50.000 5.18 0.00 30.43 3.51
2952 3076 1.512926 ATGGTCGTCAGTCTTTGTGC 58.487 50.000 0.00 0.00 0.00 4.57
2953 3077 0.464036 TGGTCGTCAGTCTTTGTGCT 59.536 50.000 0.00 0.00 0.00 4.40
2954 3078 1.134521 TGGTCGTCAGTCTTTGTGCTT 60.135 47.619 0.00 0.00 0.00 3.91
2955 3079 1.527311 GGTCGTCAGTCTTTGTGCTTC 59.473 52.381 0.00 0.00 0.00 3.86
2956 3080 2.201732 GTCGTCAGTCTTTGTGCTTCA 58.798 47.619 0.00 0.00 0.00 3.02
2958 3082 2.159099 TCGTCAGTCTTTGTGCTTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
2959 3083 2.609459 CGTCAGTCTTTGTGCTTCAGTT 59.391 45.455 0.00 0.00 0.00 3.16
2962 3141 5.030936 GTCAGTCTTTGTGCTTCAGTTTTC 58.969 41.667 0.00 0.00 0.00 2.29
2966 3145 6.634436 CAGTCTTTGTGCTTCAGTTTTCATAC 59.366 38.462 0.00 0.00 0.00 2.39
2971 3150 5.830912 TGTGCTTCAGTTTTCATACCAAAG 58.169 37.500 0.00 0.00 0.00 2.77
2972 3151 5.592282 TGTGCTTCAGTTTTCATACCAAAGA 59.408 36.000 0.00 0.00 0.00 2.52
2977 3156 7.803659 GCTTCAGTTTTCATACCAAAGAAGTAC 59.196 37.037 0.00 0.00 34.15 2.73
3066 3245 4.959596 AGAGTTGCTGATACTGCAAATG 57.040 40.909 17.39 0.00 46.41 2.32
3071 3250 3.877559 TGCTGATACTGCAAATGCTACT 58.122 40.909 6.97 0.00 42.66 2.57
3095 3282 4.220821 ACCTGTTACTGTCCACTGACTATG 59.779 45.833 0.00 0.00 42.28 2.23
3106 3293 3.814842 CCACTGACTATGTGAACTTTGCA 59.185 43.478 0.00 0.00 37.60 4.08
3207 3394 3.933332 GTGAGTACCAACCTCAACATAGC 59.067 47.826 0.00 0.00 40.44 2.97
3210 3397 4.097418 AGTACCAACCTCAACATAGCTCT 58.903 43.478 0.00 0.00 0.00 4.09
3225 3412 8.618677 CAACATAGCTCTTGTGATGAAATATGT 58.381 33.333 3.20 0.00 33.89 2.29
3280 3467 7.016563 TCCATTTCATCATAGTACTGGTGCTAT 59.983 37.037 5.39 5.70 38.71 2.97
3334 3521 2.669300 TCATCTCTGAAGCACTCTGC 57.331 50.000 0.00 0.00 45.46 4.26
3432 3619 4.579869 AGCCTTGGTACTTAATCAGTGTG 58.420 43.478 0.00 0.00 35.97 3.82
3491 3678 2.401583 ACAGTGACAAGTGCACTTCA 57.598 45.000 28.97 21.85 43.67 3.02
3581 3768 5.581085 CACCGTTCCTTGGTTATCTTCTTAG 59.419 44.000 0.00 0.00 37.72 2.18
3727 3914 2.360350 ATGTGCTCGTTGCCTGGG 60.360 61.111 0.00 0.00 42.00 4.45
3757 3950 4.707030 TGCATTTTCCATAGCAACTGAG 57.293 40.909 0.00 0.00 33.48 3.35
3876 4069 3.054728 TCCTTGACTTCTCCAACAACACA 60.055 43.478 0.00 0.00 0.00 3.72
3931 4139 2.630592 TTCGCCCAAACCAAAACGCC 62.631 55.000 0.00 0.00 0.00 5.68
3941 4149 4.434713 AACCAAAACGCCATGACTAATC 57.565 40.909 0.00 0.00 0.00 1.75
3963 4171 4.022068 TCTCACTTGATTTTGCCATGGAAC 60.022 41.667 18.40 0.00 0.00 3.62
3972 4180 1.367346 TGCCATGGAACTTACAGGGA 58.633 50.000 18.40 0.00 42.09 4.20
4039 4247 4.003648 ACAGTTCAGTTATGCTAGTTGGC 58.996 43.478 0.00 0.00 0.00 4.52
4085 4293 1.748879 GCCTGCCTGTTATGCCGAA 60.749 57.895 0.00 0.00 0.00 4.30
4103 4311 4.335315 GCCGAACAATCAAATGGTATCTGA 59.665 41.667 0.00 0.00 0.00 3.27
4105 4313 5.008019 CCGAACAATCAAATGGTATCTGAGG 59.992 44.000 0.00 0.00 0.00 3.86
4111 4319 6.566079 ATCAAATGGTATCTGAGGTCTGAA 57.434 37.500 0.00 0.00 0.00 3.02
4116 4324 3.011821 TGGTATCTGAGGTCTGAACTCCT 59.988 47.826 19.45 2.46 36.70 3.69
4137 4345 4.805719 CCTTTTTCTTTCTGTTCAACAGCC 59.194 41.667 13.15 0.00 45.54 4.85
4188 4396 2.189594 TCTGTTCTTGGATGGCACTG 57.810 50.000 0.00 0.00 0.00 3.66
4200 4408 3.330701 GGATGGCACTGGGAAATATCCTA 59.669 47.826 0.00 0.00 45.77 2.94
4263 4471 2.810852 CAACCCTTCTCTTCTGTTCTGC 59.189 50.000 0.00 0.00 0.00 4.26
4267 4475 2.301296 CCTTCTCTTCTGTTCTGCTCCA 59.699 50.000 0.00 0.00 0.00 3.86
4278 4486 5.011635 TCTGTTCTGCTCCACACATAAGTAA 59.988 40.000 0.00 0.00 0.00 2.24
4279 4487 5.616270 TGTTCTGCTCCACACATAAGTAAA 58.384 37.500 0.00 0.00 0.00 2.01
4284 4492 8.301252 TCTGCTCCACACATAAGTAAATACTA 57.699 34.615 0.00 0.00 34.99 1.82
4285 4493 8.414003 TCTGCTCCACACATAAGTAAATACTAG 58.586 37.037 0.00 0.00 34.99 2.57
4286 4494 8.074613 TGCTCCACACATAAGTAAATACTAGT 57.925 34.615 0.00 0.00 34.99 2.57
4287 4495 9.192642 TGCTCCACACATAAGTAAATACTAGTA 57.807 33.333 4.77 4.77 34.99 1.82
4288 4496 9.680315 GCTCCACACATAAGTAAATACTAGTAG 57.320 37.037 8.85 0.00 34.99 2.57
4441 4649 7.714703 CACTCCCTAGTGTTTATTACTACTCC 58.285 42.308 0.00 0.00 46.76 3.85
4442 4650 7.560626 CACTCCCTAGTGTTTATTACTACTCCT 59.439 40.741 0.00 0.00 46.76 3.69
4446 4654 7.201983 CCCTAGTGTTTATTACTACTCCTTCCC 60.202 44.444 0.00 0.00 0.00 3.97
4450 4658 5.361857 TGTTTATTACTACTCCTTCCCTCCG 59.638 44.000 0.00 0.00 0.00 4.63
4451 4659 3.684408 ATTACTACTCCTTCCCTCCGT 57.316 47.619 0.00 0.00 0.00 4.69
4452 4660 2.725221 TACTACTCCTTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
4453 4661 0.033306 ACTACTCCTTCCCTCCGTCC 60.033 60.000 0.00 0.00 0.00 4.79
4454 4662 0.033405 CTACTCCTTCCCTCCGTCCA 60.033 60.000 0.00 0.00 0.00 4.02
4467 4675 6.225318 TCCCTCCGTCCAATAATATAAAACG 58.775 40.000 0.00 0.00 0.00 3.60
4489 4697 5.120208 ACGTTATTACATCCAATATGCGAGC 59.880 40.000 0.00 0.00 0.00 5.03
4578 4790 3.023119 TCTGTGCACCATTGTTGAAACT 58.977 40.909 15.69 0.00 0.00 2.66
4580 4792 4.642437 TCTGTGCACCATTGTTGAAACTTA 59.358 37.500 15.69 0.00 0.00 2.24
4643 4862 2.492088 GGCCTTCTGTTTGGTGATAACC 59.508 50.000 0.00 0.00 0.00 2.85
4796 5015 1.080434 GTCAGTGCTCCTCGTCACC 60.080 63.158 0.00 0.00 33.90 4.02
4822 5041 1.369692 CCTGGGTACGTGCTTCACA 59.630 57.895 3.01 0.00 33.40 3.58
4845 5089 1.835927 GCCAGGGCTTCTCTCACTGT 61.836 60.000 2.30 0.00 38.26 3.55
4846 5090 1.561643 CCAGGGCTTCTCTCACTGTA 58.438 55.000 0.00 0.00 0.00 2.74
4847 5091 2.114616 CCAGGGCTTCTCTCACTGTAT 58.885 52.381 0.00 0.00 0.00 2.29
4848 5092 2.503356 CCAGGGCTTCTCTCACTGTATT 59.497 50.000 0.00 0.00 0.00 1.89
4849 5093 3.431486 CCAGGGCTTCTCTCACTGTATTC 60.431 52.174 0.00 0.00 0.00 1.75
4850 5094 3.196469 CAGGGCTTCTCTCACTGTATTCA 59.804 47.826 0.00 0.00 0.00 2.57
4851 5095 3.450457 AGGGCTTCTCTCACTGTATTCAG 59.550 47.826 0.00 0.00 46.18 3.02
4865 5109 6.111768 CTGTATTCAGTATTGTTGCTGACC 57.888 41.667 0.00 0.00 43.22 4.02
4866 5110 4.941263 TGTATTCAGTATTGTTGCTGACCC 59.059 41.667 0.00 0.00 43.22 4.46
4867 5111 2.093306 TCAGTATTGTTGCTGACCCG 57.907 50.000 0.00 0.00 39.34 5.28
4868 5112 1.086696 CAGTATTGTTGCTGACCCGG 58.913 55.000 0.00 0.00 37.75 5.73
4869 5113 0.676782 AGTATTGTTGCTGACCCGGC 60.677 55.000 0.00 0.00 36.10 6.13
4870 5114 1.377987 TATTGTTGCTGACCCGGCC 60.378 57.895 0.00 0.00 34.37 6.13
4886 5130 0.243636 GGCCTGTACATGTTTGTGCC 59.756 55.000 2.30 8.52 37.63 5.01
5041 5285 3.707793 CCTGCTACTCAACTCGGTAATC 58.292 50.000 0.00 0.00 0.00 1.75
5066 5310 6.418057 AGATTCACTACTTCCTCCATCATC 57.582 41.667 0.00 0.00 0.00 2.92
5067 5311 5.901853 AGATTCACTACTTCCTCCATCATCA 59.098 40.000 0.00 0.00 0.00 3.07
5069 5313 6.566079 TTCACTACTTCCTCCATCATCATT 57.434 37.500 0.00 0.00 0.00 2.57
5071 5315 5.901853 TCACTACTTCCTCCATCATCATTCT 59.098 40.000 0.00 0.00 0.00 2.40
5072 5316 5.990386 CACTACTTCCTCCATCATCATTCTG 59.010 44.000 0.00 0.00 0.00 3.02
5073 5317 5.664908 ACTACTTCCTCCATCATCATTCTGT 59.335 40.000 0.00 0.00 0.00 3.41
5076 5320 4.684484 TCCTCCATCATCATTCTGTCTG 57.316 45.455 0.00 0.00 0.00 3.51
5079 5323 4.059511 CTCCATCATCATTCTGTCTGCTC 58.940 47.826 0.00 0.00 0.00 4.26
5080 5324 3.139850 CCATCATCATTCTGTCTGCTCC 58.860 50.000 0.00 0.00 0.00 4.70
5081 5325 3.433173 CCATCATCATTCTGTCTGCTCCA 60.433 47.826 0.00 0.00 0.00 3.86
5113 5357 4.094146 GCTGTGATAGAAGAAACTTGGAGC 59.906 45.833 0.00 0.00 0.00 4.70
5121 5365 2.843701 AGAAACTTGGAGCACTGACAG 58.156 47.619 0.00 0.00 0.00 3.51
5216 5460 3.867783 CGGGTGGTGTGGGTGTCA 61.868 66.667 0.00 0.00 0.00 3.58
5273 5517 1.458639 GCATCATAAGCTGGTGGGCC 61.459 60.000 0.00 0.00 36.41 5.80
5391 5635 1.153597 CGCCGTAAGCATCAGCATCA 61.154 55.000 0.00 0.00 45.49 3.07
5392 5636 0.585357 GCCGTAAGCATCAGCATCAG 59.415 55.000 0.00 0.00 45.49 2.90
5393 5637 0.585357 CCGTAAGCATCAGCATCAGC 59.415 55.000 0.00 0.00 45.49 4.26
5415 5659 1.203001 TCCCTTCCGCCACTTGATTTT 60.203 47.619 0.00 0.00 0.00 1.82
5417 5661 1.669795 CCTTCCGCCACTTGATTTTGC 60.670 52.381 0.00 0.00 0.00 3.68
5419 5663 2.192664 TCCGCCACTTGATTTTGCTA 57.807 45.000 0.00 0.00 0.00 3.49
5420 5664 1.810151 TCCGCCACTTGATTTTGCTAC 59.190 47.619 0.00 0.00 0.00 3.58
5427 5671 4.524328 CCACTTGATTTTGCTACCTCCTTT 59.476 41.667 0.00 0.00 0.00 3.11
5428 5672 5.011023 CCACTTGATTTTGCTACCTCCTTTT 59.989 40.000 0.00 0.00 0.00 2.27
5454 5721 2.698855 ATCATTTCTGACGAGTGGGG 57.301 50.000 0.00 0.00 33.22 4.96
5456 5723 0.324943 CATTTCTGACGAGTGGGGGT 59.675 55.000 0.00 0.00 0.00 4.95
5457 5724 1.064825 ATTTCTGACGAGTGGGGGTT 58.935 50.000 0.00 0.00 0.00 4.11
5564 5831 4.598894 CGGGCGGATGCTCCTGAG 62.599 72.222 0.00 0.00 38.89 3.35
5607 5874 4.819769 TGGCCACTTGAGATTTATTTTGC 58.180 39.130 0.00 0.00 0.00 3.68
5634 5901 3.985925 GTGTTGACGGGTAACTAACTGAG 59.014 47.826 0.00 0.00 0.00 3.35
5906 6198 3.207669 GCCTGAGCATGGCGAAGG 61.208 66.667 0.00 7.58 41.03 3.46
5940 6232 3.334054 GAAGGTCCCAGCCCAGCT 61.334 66.667 0.00 0.00 40.77 4.24
6092 6384 2.098117 CGGAAAATGGACAGAGGAATGC 59.902 50.000 0.00 0.00 0.00 3.56
6104 6396 2.620112 GGAATGCGGGCATCCATCG 61.620 63.158 6.61 0.00 35.31 3.84
6153 6445 3.951037 TGACTTGTGTGTAGCAAACCAAT 59.049 39.130 0.00 0.00 0.00 3.16
6202 6494 5.277058 GGATGATGAACTTTCAGCGACATAC 60.277 44.000 2.98 1.74 45.99 2.39
6210 6502 1.438651 TCAGCGACATACAACCTTGC 58.561 50.000 0.00 0.00 0.00 4.01
6236 6528 3.304586 CACCGTGTGTGTTGTGTTG 57.695 52.632 0.00 0.00 40.26 3.33
6238 6530 0.519519 ACCGTGTGTGTTGTGTTGTG 59.480 50.000 0.00 0.00 0.00 3.33
6242 6534 2.238363 GTGTGTGTTGTGTTGTGTTCG 58.762 47.619 0.00 0.00 0.00 3.95
6324 6616 1.600916 AGGCACGGCTTTGTTCCTC 60.601 57.895 0.00 0.00 28.76 3.71
6412 6713 2.567985 TCCTGAAACCGACAAGAAACC 58.432 47.619 0.00 0.00 0.00 3.27
6413 6714 1.263217 CCTGAAACCGACAAGAAACCG 59.737 52.381 0.00 0.00 0.00 4.44
6451 6810 1.140589 CAACGCCCAGCACAAACAA 59.859 52.632 0.00 0.00 0.00 2.83
6467 6835 4.987912 ACAAACAATTGAAAACATAGGGCG 59.012 37.500 13.59 0.00 38.94 6.13
6484 6852 1.557443 GCGGACTCCTTGTGTTGACG 61.557 60.000 0.00 0.00 0.00 4.35
6512 6885 2.548480 AGAAACAGACTTTGCGCCTAAC 59.452 45.455 4.18 0.00 0.00 2.34
6550 6925 3.000222 CCAGAGCTTTTTCAACAAAACGC 60.000 43.478 0.00 1.53 43.69 4.84
6577 6968 2.501723 TCCTCTTGAGGGCTTGTACATC 59.498 50.000 15.81 0.00 0.00 3.06
6605 7001 5.892119 ACAGATCAGTAGACGGAGGAATTAA 59.108 40.000 0.00 0.00 0.00 1.40
6613 7009 9.595823 CAGTAGACGGAGGAATTAAAAGAATAA 57.404 33.333 0.00 0.00 0.00 1.40
6630 7026 9.558396 AAAAGAATAATCTCATCTGTCCAGATC 57.442 33.333 6.82 0.00 39.50 2.75
6668 7064 3.308866 GCCAATCTTCAATGATGCTTTGC 59.691 43.478 0.00 0.00 0.00 3.68
6671 7067 5.168569 CAATCTTCAATGATGCTTTGCAGT 58.831 37.500 0.00 0.00 43.65 4.40
6683 7079 4.367450 TGCTTTGCAGTAAAATGAACCAC 58.633 39.130 0.00 0.00 33.32 4.16
6701 7097 2.022195 CACTGATGGGCCTGAATTCTG 58.978 52.381 4.53 6.17 0.00 3.02
6702 7098 1.918262 ACTGATGGGCCTGAATTCTGA 59.082 47.619 13.45 0.00 0.00 3.27
6703 7099 2.092538 ACTGATGGGCCTGAATTCTGAG 60.093 50.000 13.45 0.00 0.00 3.35
6705 7101 3.114606 TGATGGGCCTGAATTCTGAGTA 58.885 45.455 13.45 0.00 0.00 2.59
6706 7102 3.135348 TGATGGGCCTGAATTCTGAGTAG 59.865 47.826 13.45 0.00 0.00 2.57
6708 7104 1.141858 GGGCCTGAATTCTGAGTAGGG 59.858 57.143 13.45 2.88 0.00 3.53
6709 7105 1.840635 GGCCTGAATTCTGAGTAGGGT 59.159 52.381 13.45 0.00 0.00 4.34
6710 7106 2.420687 GGCCTGAATTCTGAGTAGGGTG 60.421 54.545 13.45 0.00 0.00 4.61
6711 7107 2.237392 GCCTGAATTCTGAGTAGGGTGT 59.763 50.000 13.45 0.00 0.00 4.16
6712 7108 3.307762 GCCTGAATTCTGAGTAGGGTGTT 60.308 47.826 13.45 0.00 0.00 3.32
6713 7109 4.807643 GCCTGAATTCTGAGTAGGGTGTTT 60.808 45.833 13.45 0.00 0.00 2.83
6714 7110 4.938226 CCTGAATTCTGAGTAGGGTGTTTC 59.062 45.833 13.45 0.00 0.00 2.78
6716 7112 3.611766 ATTCTGAGTAGGGTGTTTCGG 57.388 47.619 0.00 0.00 0.00 4.30
6717 7113 2.005370 TCTGAGTAGGGTGTTTCGGT 57.995 50.000 0.00 0.00 0.00 4.69
6718 7114 1.616865 TCTGAGTAGGGTGTTTCGGTG 59.383 52.381 0.00 0.00 0.00 4.94
6719 7115 1.343465 CTGAGTAGGGTGTTTCGGTGT 59.657 52.381 0.00 0.00 0.00 4.16
6720 7116 1.342174 TGAGTAGGGTGTTTCGGTGTC 59.658 52.381 0.00 0.00 0.00 3.67
6721 7117 0.683412 AGTAGGGTGTTTCGGTGTCC 59.317 55.000 0.00 0.00 0.00 4.02
6722 7118 0.393820 GTAGGGTGTTTCGGTGTCCA 59.606 55.000 0.00 0.00 0.00 4.02
6723 7119 0.682852 TAGGGTGTTTCGGTGTCCAG 59.317 55.000 0.00 0.00 0.00 3.86
6724 7120 1.599797 GGGTGTTTCGGTGTCCAGG 60.600 63.158 0.00 0.00 0.00 4.45
6726 7122 1.227853 GTGTTTCGGTGTCCAGGCT 60.228 57.895 0.00 0.00 0.00 4.58
6727 7123 1.070786 TGTTTCGGTGTCCAGGCTC 59.929 57.895 0.00 0.00 0.00 4.70
6729 7125 0.321653 GTTTCGGTGTCCAGGCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
6730 7126 0.036388 TTTCGGTGTCCAGGCTCATC 60.036 55.000 0.00 0.00 0.00 2.92
6731 7127 0.904865 TTCGGTGTCCAGGCTCATCT 60.905 55.000 0.00 0.00 0.00 2.90
6733 7129 1.451028 GGTGTCCAGGCTCATCTGC 60.451 63.158 0.00 0.00 33.64 4.26
6734 7130 1.297689 GTGTCCAGGCTCATCTGCA 59.702 57.895 0.00 0.00 33.64 4.41
6737 7133 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
6738 7134 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
6739 7135 3.790437 AGGCTCATCTGCACCCGG 61.790 66.667 0.00 0.00 34.04 5.73
6740 7136 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
6742 7138 1.220749 GCTCATCTGCACCCGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
6743 7139 0.811616 GCTCATCTGCACCCGGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
6744 7140 0.824109 CTCATCTGCACCCGGTTAGA 59.176 55.000 0.00 4.22 0.00 2.10
6745 7141 1.207089 CTCATCTGCACCCGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
6746 7142 1.626321 TCATCTGCACCCGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
6747 7143 2.039216 TCATCTGCACCCGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
6748 7144 2.871096 TCTGCACCCGGTTAGAAAAT 57.129 45.000 0.00 0.00 0.00 1.82
6749 7145 3.985019 TCTGCACCCGGTTAGAAAATA 57.015 42.857 0.00 0.00 0.00 1.40
6750 7146 4.289238 TCTGCACCCGGTTAGAAAATAA 57.711 40.909 0.00 0.00 0.00 1.40
6751 7147 4.850680 TCTGCACCCGGTTAGAAAATAAT 58.149 39.130 0.00 0.00 0.00 1.28
6752 7148 5.258051 TCTGCACCCGGTTAGAAAATAATT 58.742 37.500 0.00 0.00 0.00 1.40
6753 7149 5.355910 TCTGCACCCGGTTAGAAAATAATTC 59.644 40.000 0.00 0.00 0.00 2.17
6754 7150 4.095185 TGCACCCGGTTAGAAAATAATTCG 59.905 41.667 0.00 0.00 0.00 3.34
6755 7151 4.095334 GCACCCGGTTAGAAAATAATTCGT 59.905 41.667 0.00 0.00 0.00 3.85
6756 7152 5.294060 GCACCCGGTTAGAAAATAATTCGTA 59.706 40.000 0.00 0.00 0.00 3.43
6757 7153 6.183360 GCACCCGGTTAGAAAATAATTCGTAA 60.183 38.462 0.00 0.00 0.00 3.18
6759 7155 8.235905 CACCCGGTTAGAAAATAATTCGTAAAA 58.764 33.333 0.00 0.00 0.00 1.52
6760 7156 8.791675 ACCCGGTTAGAAAATAATTCGTAAAAA 58.208 29.630 0.00 0.00 0.00 1.94
6801 7197 6.676237 AAAATTCAATTCTTTTTGTGCGGT 57.324 29.167 0.00 0.00 0.00 5.68
6802 7198 7.778470 AAAATTCAATTCTTTTTGTGCGGTA 57.222 28.000 0.00 0.00 0.00 4.02
6804 7200 5.759506 TTCAATTCTTTTTGTGCGGTAGA 57.240 34.783 0.00 0.00 0.00 2.59
6805 7201 5.759506 TCAATTCTTTTTGTGCGGTAGAA 57.240 34.783 0.00 0.00 0.00 2.10
6806 7202 6.137794 TCAATTCTTTTTGTGCGGTAGAAA 57.862 33.333 0.00 0.00 0.00 2.52
6808 7204 7.206687 TCAATTCTTTTTGTGCGGTAGAAAAT 58.793 30.769 2.26 0.00 32.37 1.82
6809 7205 7.708752 TCAATTCTTTTTGTGCGGTAGAAAATT 59.291 29.630 2.26 0.00 32.37 1.82
6810 7206 8.334632 CAATTCTTTTTGTGCGGTAGAAAATTT 58.665 29.630 2.26 0.00 32.37 1.82
6811 7207 6.820470 TCTTTTTGTGCGGTAGAAAATTTG 57.180 33.333 2.26 0.00 32.37 2.32
6813 7209 7.206687 TCTTTTTGTGCGGTAGAAAATTTGAT 58.793 30.769 2.26 0.00 32.37 2.57
6814 7210 6.761731 TTTTGTGCGGTAGAAAATTTGATG 57.238 33.333 0.00 0.00 0.00 3.07
6815 7211 3.832276 TGTGCGGTAGAAAATTTGATGC 58.168 40.909 0.00 0.00 0.00 3.91
6816 7212 2.845967 GTGCGGTAGAAAATTTGATGCG 59.154 45.455 0.00 0.00 0.00 4.73
6818 7214 2.845967 GCGGTAGAAAATTTGATGCGTG 59.154 45.455 0.00 0.00 0.00 5.34
6819 7215 3.425625 GCGGTAGAAAATTTGATGCGTGA 60.426 43.478 0.00 0.00 0.00 4.35
6820 7216 4.334443 CGGTAGAAAATTTGATGCGTGAG 58.666 43.478 0.00 0.00 0.00 3.51
6821 7217 4.662145 GGTAGAAAATTTGATGCGTGAGG 58.338 43.478 0.00 0.00 0.00 3.86
6822 7218 3.221964 AGAAAATTTGATGCGTGAGGC 57.778 42.857 0.00 0.00 43.96 4.70
6823 7219 2.094545 AGAAAATTTGATGCGTGAGGCC 60.095 45.455 0.00 0.00 42.61 5.19
6824 7220 1.549203 AAATTTGATGCGTGAGGCCT 58.451 45.000 3.86 3.86 42.61 5.19
6825 7221 0.813184 AATTTGATGCGTGAGGCCTG 59.187 50.000 12.00 0.00 42.61 4.85
6826 7222 1.660560 ATTTGATGCGTGAGGCCTGC 61.661 55.000 12.00 8.68 42.61 4.85
6827 7223 2.753009 TTTGATGCGTGAGGCCTGCT 62.753 55.000 12.00 0.00 42.61 4.24
6828 7224 1.898330 TTGATGCGTGAGGCCTGCTA 61.898 55.000 12.00 0.00 42.61 3.49
6829 7225 1.884926 GATGCGTGAGGCCTGCTAC 60.885 63.158 12.00 5.55 42.61 3.58
6830 7226 2.578163 GATGCGTGAGGCCTGCTACA 62.578 60.000 12.00 3.28 42.61 2.74
6832 7228 1.671054 GCGTGAGGCCTGCTACAAA 60.671 57.895 12.00 0.00 34.80 2.83
6833 7229 1.026718 GCGTGAGGCCTGCTACAAAT 61.027 55.000 12.00 0.00 34.80 2.32
6834 7230 1.453155 CGTGAGGCCTGCTACAAATT 58.547 50.000 12.00 0.00 0.00 1.82
6835 7231 1.812571 CGTGAGGCCTGCTACAAATTT 59.187 47.619 12.00 0.00 0.00 1.82
6836 7232 2.159517 CGTGAGGCCTGCTACAAATTTC 60.160 50.000 12.00 0.00 0.00 2.17
6838 7234 3.255642 GTGAGGCCTGCTACAAATTTCAA 59.744 43.478 12.00 0.00 0.00 2.69
6840 7236 3.500343 AGGCCTGCTACAAATTTCAAGT 58.500 40.909 3.11 0.00 0.00 3.16
6841 7237 3.507622 AGGCCTGCTACAAATTTCAAGTC 59.492 43.478 3.11 0.00 0.00 3.01
6844 7240 5.473039 GCCTGCTACAAATTTCAAGTCATT 58.527 37.500 0.00 0.00 0.00 2.57
6845 7241 5.928264 GCCTGCTACAAATTTCAAGTCATTT 59.072 36.000 0.00 0.00 0.00 2.32
6849 7245 7.495901 TGCTACAAATTTCAAGTCATTTGGAA 58.504 30.769 8.94 0.00 42.40 3.53
6850 7246 8.149647 TGCTACAAATTTCAAGTCATTTGGAAT 58.850 29.630 8.94 0.00 45.12 3.01
6857 7253 5.633830 TCAAGTCATTTGGAATTCTGAGC 57.366 39.130 5.23 0.00 37.39 4.26
6858 7254 5.072055 TCAAGTCATTTGGAATTCTGAGCA 58.928 37.500 5.23 0.00 37.39 4.26
6859 7255 5.182570 TCAAGTCATTTGGAATTCTGAGCAG 59.817 40.000 5.23 0.00 37.39 4.24
6860 7256 4.660168 AGTCATTTGGAATTCTGAGCAGT 58.340 39.130 5.23 0.00 0.00 4.40
6861 7257 5.075493 AGTCATTTGGAATTCTGAGCAGTT 58.925 37.500 5.23 0.00 0.00 3.16
6862 7258 5.182760 AGTCATTTGGAATTCTGAGCAGTTC 59.817 40.000 5.23 0.00 0.00 3.01
6863 7259 5.182760 GTCATTTGGAATTCTGAGCAGTTCT 59.817 40.000 5.23 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.621268 CAGGTAACACATGTCATAACCCG 59.379 47.826 0.00 0.00 41.41 5.28
28 29 3.261643 TCTCTGCAGGTAACACATGTCAT 59.738 43.478 15.13 0.00 41.41 3.06
58 61 6.120507 AGAGCAGAAGGAATTACAGTTCTT 57.879 37.500 0.00 0.00 0.00 2.52
59 62 5.337975 GGAGAGCAGAAGGAATTACAGTTCT 60.338 44.000 0.00 0.00 0.00 3.01
66 69 2.747177 TCCGGAGAGCAGAAGGAATTA 58.253 47.619 0.00 0.00 0.00 1.40
91 94 1.115326 GCATTGCCCAACCTATCCCC 61.115 60.000 0.00 0.00 0.00 4.81
103 106 1.810853 GTTGGCCAATCGCATTGCC 60.811 57.895 23.66 0.66 40.31 4.52
106 109 1.656818 CTCGGTTGGCCAATCGCATT 61.657 55.000 39.99 0.00 44.00 3.56
110 113 3.508840 GCCTCGGTTGGCCAATCG 61.509 66.667 39.37 39.37 46.82 3.34
117 120 3.659089 AATCGGTCGCCTCGGTTGG 62.659 63.158 0.00 0.00 29.09 3.77
122 125 1.413767 CTGAACAATCGGTCGCCTCG 61.414 60.000 0.00 0.00 0.00 4.63
127 130 2.196749 CCTCATCTGAACAATCGGTCG 58.803 52.381 0.00 0.00 33.40 4.79
140 143 1.512926 GTCGTGTTGTTGCCTCATCT 58.487 50.000 0.00 0.00 0.00 2.90
155 158 0.944311 GATGAACACTGCCACGTCGT 60.944 55.000 0.00 0.00 0.00 4.34
157 160 0.602638 TGGATGAACACTGCCACGTC 60.603 55.000 0.00 0.00 0.00 4.34
190 193 3.500448 TTGAACTCTGCCCATTACACA 57.500 42.857 0.00 0.00 0.00 3.72
222 225 1.418373 CGCACGAGACAAATGTGAGA 58.582 50.000 0.00 0.00 35.77 3.27
261 264 1.041447 ACTCGAATTCCCCGATCCGT 61.041 55.000 0.00 0.00 35.35 4.69
280 283 1.699730 TCTCGGTTTGTGTCTCTCCA 58.300 50.000 0.00 0.00 0.00 3.86
304 312 5.048991 CCAACGGTAAAGTGCTTAAGTCATT 60.049 40.000 4.02 0.00 0.00 2.57
305 313 4.454504 CCAACGGTAAAGTGCTTAAGTCAT 59.545 41.667 4.02 0.00 0.00 3.06
306 314 3.810941 CCAACGGTAAAGTGCTTAAGTCA 59.189 43.478 4.02 0.00 0.00 3.41
307 315 4.060205 TCCAACGGTAAAGTGCTTAAGTC 58.940 43.478 4.02 0.00 0.00 3.01
308 316 4.075963 TCCAACGGTAAAGTGCTTAAGT 57.924 40.909 4.02 0.00 0.00 2.24
309 317 4.693566 TGATCCAACGGTAAAGTGCTTAAG 59.306 41.667 0.00 0.00 0.00 1.85
311 319 4.274602 TGATCCAACGGTAAAGTGCTTA 57.725 40.909 0.00 0.00 0.00 3.09
313 321 2.851263 TGATCCAACGGTAAAGTGCT 57.149 45.000 0.00 0.00 0.00 4.40
314 322 3.006940 TCATGATCCAACGGTAAAGTGC 58.993 45.455 0.00 0.00 0.00 4.40
316 324 4.570772 CGAATCATGATCCAACGGTAAAGT 59.429 41.667 9.06 0.00 0.00 2.66
317 325 4.808895 TCGAATCATGATCCAACGGTAAAG 59.191 41.667 9.06 0.00 0.00 1.85
361 370 8.575649 TTTGATGTTTCTATTTCCTTCCTACC 57.424 34.615 0.00 0.00 0.00 3.18
396 405 4.681074 ATTACACTTGGTTGGGGTTTTG 57.319 40.909 0.00 0.00 0.00 2.44
444 453 7.119262 ACACTTGGTTTATCTATTGTAGTGCAC 59.881 37.037 9.40 9.40 35.18 4.57
470 479 6.997655 AGATTTATCTATCCGTGAAGATGCA 58.002 36.000 0.00 0.00 34.85 3.96
510 519 9.211410 CATATCCTGATCTTTATCTATCCCTGT 57.789 37.037 0.00 0.00 32.93 4.00
513 522 7.449247 GCCATATCCTGATCTTTATCTATCCC 58.551 42.308 0.00 0.00 32.93 3.85
514 523 7.292120 AGGCCATATCCTGATCTTTATCTATCC 59.708 40.741 5.01 0.00 34.56 2.59
811 846 2.774234 AGTGAGAGAGAGAGAGAGAGGG 59.226 54.545 0.00 0.00 0.00 4.30
813 848 3.711086 CGAGTGAGAGAGAGAGAGAGAG 58.289 54.545 0.00 0.00 0.00 3.20
814 849 2.159099 GCGAGTGAGAGAGAGAGAGAGA 60.159 54.545 0.00 0.00 0.00 3.10
815 850 2.205074 GCGAGTGAGAGAGAGAGAGAG 58.795 57.143 0.00 0.00 0.00 3.20
816 851 1.470805 CGCGAGTGAGAGAGAGAGAGA 60.471 57.143 0.00 0.00 0.00 3.10
904 939 2.442458 GGGAGGAGGGAGGACGTC 60.442 72.222 7.13 7.13 0.00 4.34
914 949 3.447025 GATCAACGCCGGGGAGGAG 62.447 68.421 27.23 11.31 45.00 3.69
1217 1268 1.344942 CGCGTGAACTCAGCTGTACC 61.345 60.000 14.67 2.58 0.00 3.34
1307 1374 2.687805 GCTTTTTCGTCCCCGAGGC 61.688 63.158 0.00 0.00 45.24 4.70
1379 1447 5.620879 GCAGGCATCTTTTAGGTTTCTCTTG 60.621 44.000 0.00 0.00 0.00 3.02
1389 1457 9.206870 TCTTAAAATTTTGCAGGCATCTTTTAG 57.793 29.630 13.76 0.00 0.00 1.85
1414 1482 6.037610 ACAGAAAATTATGAACTCGCCATCTC 59.962 38.462 0.00 0.00 0.00 2.75
1448 1519 9.401058 AGAATAAAGGTTCACAGATGGAAATAG 57.599 33.333 0.00 0.00 0.00 1.73
1456 1527 5.591877 GCATGGAGAATAAAGGTTCACAGAT 59.408 40.000 0.00 0.00 0.00 2.90
1459 1530 4.922206 AGCATGGAGAATAAAGGTTCACA 58.078 39.130 0.00 0.00 0.00 3.58
1461 1532 7.345691 TGATAAGCATGGAGAATAAAGGTTCA 58.654 34.615 0.00 0.00 0.00 3.18
1469 1540 9.281371 CTTCAGAAATGATAAGCATGGAGAATA 57.719 33.333 0.00 0.00 37.28 1.75
1470 1541 7.778853 ACTTCAGAAATGATAAGCATGGAGAAT 59.221 33.333 0.00 0.00 37.28 2.40
1477 1548 6.810182 GCACAAACTTCAGAAATGATAAGCAT 59.190 34.615 0.00 0.00 39.43 3.79
1480 1551 6.307318 GCTGCACAAACTTCAGAAATGATAAG 59.693 38.462 0.00 0.00 0.00 1.73
1547 1618 5.698089 TCTCTGAATAGAAACTGCTGTGTTG 59.302 40.000 0.00 0.00 31.21 3.33
1551 1622 4.934602 GCTTCTCTGAATAGAAACTGCTGT 59.065 41.667 0.00 0.00 35.14 4.40
1552 1623 4.032672 CGCTTCTCTGAATAGAAACTGCTG 59.967 45.833 0.00 0.00 35.14 4.41
1553 1624 4.180057 CGCTTCTCTGAATAGAAACTGCT 58.820 43.478 0.00 0.00 35.14 4.24
1554 1625 3.929610 ACGCTTCTCTGAATAGAAACTGC 59.070 43.478 0.00 0.00 35.14 4.40
1555 1626 5.164233 TCACGCTTCTCTGAATAGAAACTG 58.836 41.667 0.00 0.00 35.14 3.16
1573 1644 0.389948 ATCTCGGTCAAACCTCACGC 60.390 55.000 0.00 0.00 35.66 5.34
1595 1666 2.223479 TGCCAAGAAACGAACAAGCTTC 60.223 45.455 0.00 0.00 0.00 3.86
1613 1684 3.621268 GGAAAAAGAACAAAACCAGTGCC 59.379 43.478 0.00 0.00 0.00 5.01
1676 1748 6.579292 CGAAAATAGATAGACTTCTAGCCACG 59.421 42.308 0.00 0.00 35.58 4.94
1748 1820 5.399013 CACACCATCATATATACGAGCGAA 58.601 41.667 0.00 0.00 0.00 4.70
1751 1823 5.073311 ACCACACCATCATATATACGAGC 57.927 43.478 0.00 0.00 0.00 5.03
1776 1848 0.243907 GAGAAGCTGCACGTCCTACA 59.756 55.000 1.02 0.00 0.00 2.74
1783 1855 2.811317 GGGTCGAGAAGCTGCACG 60.811 66.667 4.99 4.99 0.00 5.34
1821 1893 1.486310 TGGGTGATGACACTAGATGGC 59.514 52.381 0.00 0.00 45.32 4.40
1822 1894 3.912496 TTGGGTGATGACACTAGATGG 57.088 47.619 0.00 0.00 45.32 3.51
1823 1895 4.577693 CCATTTGGGTGATGACACTAGATG 59.422 45.833 0.00 0.00 45.32 2.90
1880 1952 3.435105 TTAGGCTTTTTGCACACACAG 57.565 42.857 0.00 0.00 45.15 3.66
1887 1960 4.447290 GGAAAGGTTTTAGGCTTTTTGCA 58.553 39.130 0.00 0.00 45.15 4.08
1909 1982 0.950836 TGGATTGAAGTTGGTGTGCG 59.049 50.000 0.00 0.00 0.00 5.34
1930 2003 6.235231 TGGGAGTTTGACTTCTATATGTCC 57.765 41.667 0.00 0.00 32.67 4.02
1934 2007 5.191722 TGGCTTGGGAGTTTGACTTCTATAT 59.808 40.000 0.00 0.00 0.00 0.86
1935 2008 4.534500 TGGCTTGGGAGTTTGACTTCTATA 59.466 41.667 0.00 0.00 0.00 1.31
1937 2010 2.708861 TGGCTTGGGAGTTTGACTTCTA 59.291 45.455 0.00 0.00 0.00 2.10
1960 2033 1.845809 CTTGTCCTCAAGTGCACGGC 61.846 60.000 12.01 0.00 44.09 5.68
2056 2146 8.877808 TCTACTCATTAGTGTTTGCTGATATG 57.122 34.615 0.00 0.00 36.36 1.78
2125 2215 2.425773 CAGCAACGCGTGTGCTTC 60.426 61.111 31.92 14.19 39.65 3.86
2171 2261 3.928727 TGTACATATCCCGTTCGATCC 57.071 47.619 0.00 0.00 0.00 3.36
2267 2358 1.059098 CCCTATCAGGCCATGCAGTA 58.941 55.000 5.01 0.00 32.73 2.74
2296 2387 1.480219 CGACGAGCGGTCAATTAGGC 61.480 60.000 15.89 0.00 46.42 3.93
2325 2417 3.365969 CCTCGTCTTTGTTTATGGCAACC 60.366 47.826 0.00 0.00 0.00 3.77
2331 2423 8.318876 CGTACTAATTCCTCGTCTTTGTTTATG 58.681 37.037 0.00 0.00 0.00 1.90
2363 2458 1.211703 TCAGGGCTGTGAACTGAAACA 59.788 47.619 0.00 0.00 38.22 2.83
2375 2470 0.835941 AGTGCTCCTTATCAGGGCTG 59.164 55.000 7.60 0.00 41.25 4.85
2376 2471 2.324541 CTAGTGCTCCTTATCAGGGCT 58.675 52.381 7.60 0.00 41.25 5.19
2378 2473 4.730966 TCTACTAGTGCTCCTTATCAGGG 58.269 47.826 5.39 0.00 41.25 4.45
2384 2479 3.977312 TGGCTTCTACTAGTGCTCCTTA 58.023 45.455 5.39 0.00 0.00 2.69
2391 2486 6.818644 ACAAATACACATGGCTTCTACTAGTG 59.181 38.462 5.39 0.00 0.00 2.74
2399 2494 4.630069 ACTCGTACAAATACACATGGCTTC 59.370 41.667 0.00 0.00 0.00 3.86
2400 2495 4.575885 ACTCGTACAAATACACATGGCTT 58.424 39.130 0.00 0.00 0.00 4.35
2402 2497 5.107133 AGTACTCGTACAAATACACATGGC 58.893 41.667 9.62 0.00 38.48 4.40
2403 2498 8.132995 TCATAGTACTCGTACAAATACACATGG 58.867 37.037 0.00 0.00 38.48 3.66
2404 2499 9.170584 CTCATAGTACTCGTACAAATACACATG 57.829 37.037 0.00 0.00 38.48 3.21
2411 2506 8.566260 GGATACACTCATAGTACTCGTACAAAT 58.434 37.037 0.00 0.74 38.48 2.32
2414 2509 5.693555 CGGATACACTCATAGTACTCGTACA 59.306 44.000 0.00 0.00 38.48 2.90
2415 2510 5.694006 ACGGATACACTCATAGTACTCGTAC 59.306 44.000 0.00 0.00 34.24 3.67
2416 2511 5.847304 ACGGATACACTCATAGTACTCGTA 58.153 41.667 0.00 0.00 34.24 3.43
2417 2512 4.701765 ACGGATACACTCATAGTACTCGT 58.298 43.478 0.00 0.00 32.52 4.18
2418 2513 5.164109 CGTACGGATACACTCATAGTACTCG 60.164 48.000 7.57 0.00 32.93 4.18
2421 2516 5.914085 ACGTACGGATACACTCATAGTAC 57.086 43.478 21.06 0.00 32.33 2.73
2422 2517 6.981722 TCTACGTACGGATACACTCATAGTA 58.018 40.000 21.06 0.00 0.00 1.82
2423 2518 5.847304 TCTACGTACGGATACACTCATAGT 58.153 41.667 21.06 0.00 0.00 2.12
2424 2519 6.588552 GTTCTACGTACGGATACACTCATAG 58.411 44.000 21.06 7.94 0.00 2.23
2427 2522 3.306973 CGTTCTACGTACGGATACACTCA 59.693 47.826 21.06 0.00 36.74 3.41
2429 2524 3.521560 TCGTTCTACGTACGGATACACT 58.478 45.455 21.06 0.00 43.14 3.55
2432 2555 4.201724 ACACTTCGTTCTACGTACGGATAC 60.202 45.833 21.06 11.19 43.14 2.24
2448 2571 7.043125 CCATACTGATCAATCAAGTACACTTCG 60.043 40.741 0.00 0.00 36.18 3.79
2449 2572 7.766278 ACCATACTGATCAATCAAGTACACTTC 59.234 37.037 0.00 0.00 36.18 3.01
2470 2593 1.024046 GTGTGTGCGCATGGACCATA 61.024 55.000 15.91 0.99 35.21 2.74
2482 2605 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2490 2613 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2491 2614 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2492 2615 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2493 2616 1.136000 CAGTGTGTGTGTGTGTGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
2494 2617 1.155889 CAGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2495 2618 1.155889 ACAGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 38.28 3.82
2496 2619 1.535028 CAACAGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 40.26 3.72
2497 2620 1.535028 ACAACAGTGTGTGTGTGTGTG 59.465 47.619 0.00 0.00 40.26 3.82
2498 2621 1.890876 ACAACAGTGTGTGTGTGTGT 58.109 45.000 0.00 0.00 40.26 3.72
2499 2622 2.583739 CAACAACAGTGTGTGTGTGTG 58.416 47.619 0.00 0.00 40.26 3.82
2500 2623 1.068610 GCAACAACAGTGTGTGTGTGT 60.069 47.619 0.00 0.00 40.26 3.72
2501 2624 1.199789 AGCAACAACAGTGTGTGTGTG 59.800 47.619 0.00 6.50 40.26 3.82
2502 2625 1.533625 AGCAACAACAGTGTGTGTGT 58.466 45.000 0.00 0.00 40.26 3.72
2503 2626 2.539547 GCTAGCAACAACAGTGTGTGTG 60.540 50.000 10.63 0.00 40.26 3.82
2504 2627 1.670811 GCTAGCAACAACAGTGTGTGT 59.329 47.619 10.63 0.72 43.24 3.72
2505 2628 1.942657 AGCTAGCAACAACAGTGTGTG 59.057 47.619 18.83 0.04 38.27 3.82
2506 2629 2.332063 AGCTAGCAACAACAGTGTGT 57.668 45.000 18.83 0.00 38.27 3.72
2507 2630 2.738846 CCTAGCTAGCAACAACAGTGTG 59.261 50.000 18.83 0.00 38.27 3.82
2508 2631 2.368875 ACCTAGCTAGCAACAACAGTGT 59.631 45.455 18.83 0.81 40.75 3.55
2509 2632 2.738846 CACCTAGCTAGCAACAACAGTG 59.261 50.000 18.83 11.04 0.00 3.66
2579 2702 1.897641 CTCGAGAAGGCTAACGTGAC 58.102 55.000 6.58 0.00 0.00 3.67
2633 2756 3.254657 TGACCATGATGTATGCATGCATG 59.745 43.478 37.43 22.70 41.30 4.06
2634 2757 3.492337 TGACCATGATGTATGCATGCAT 58.508 40.909 33.92 33.92 41.30 3.96
2635 2758 2.933573 TGACCATGATGTATGCATGCA 58.066 42.857 25.04 25.04 41.30 3.96
2636 2759 3.994204 TTGACCATGATGTATGCATGC 57.006 42.857 11.82 11.82 41.30 4.06
2659 2782 7.290842 CACTTGCCAAGCTGTATATTTATACG 58.709 38.462 3.88 0.00 41.04 3.06
2669 2792 0.764890 AGTCCACTTGCCAAGCTGTA 59.235 50.000 3.88 0.00 0.00 2.74
2670 2793 0.106519 AAGTCCACTTGCCAAGCTGT 60.107 50.000 3.88 0.00 34.38 4.40
2686 2809 0.184451 CTCCATATGGCCAGGCAAGT 59.816 55.000 17.58 0.19 34.44 3.16
2707 2830 4.475944 GTTCACATGTGTGCAGGAATAAC 58.524 43.478 24.63 14.22 45.25 1.89
2728 2851 1.070289 GTTCCTCTCCAGTTTGACCGT 59.930 52.381 0.00 0.00 0.00 4.83
2796 2920 3.446161 GTCCTTATTTACCCAAGCAACCC 59.554 47.826 0.00 0.00 0.00 4.11
2797 2921 4.083565 TGTCCTTATTTACCCAAGCAACC 58.916 43.478 0.00 0.00 0.00 3.77
2852 2976 6.311445 TCAGATATGAAAACTGAAGCTCGAAC 59.689 38.462 0.00 0.00 37.66 3.95
2877 3001 6.458751 CCGCATATAGAAGATTTTGCACAGTT 60.459 38.462 0.00 0.00 0.00 3.16
2897 3021 0.397941 CCCTGATCCATACACCGCAT 59.602 55.000 0.00 0.00 0.00 4.73
2924 3048 2.488545 GACTGACGACCATAGTGACAGT 59.511 50.000 0.00 0.00 39.32 3.55
2932 3056 2.299013 AGCACAAAGACTGACGACCATA 59.701 45.455 0.00 0.00 0.00 2.74
2934 3058 0.464036 AGCACAAAGACTGACGACCA 59.536 50.000 0.00 0.00 0.00 4.02
2935 3059 1.527311 GAAGCACAAAGACTGACGACC 59.473 52.381 0.00 0.00 0.00 4.79
2936 3060 2.201732 TGAAGCACAAAGACTGACGAC 58.798 47.619 0.00 0.00 0.00 4.34
2938 3062 2.205074 ACTGAAGCACAAAGACTGACG 58.795 47.619 0.00 0.00 0.00 4.35
2939 3063 4.622701 AAACTGAAGCACAAAGACTGAC 57.377 40.909 0.00 0.00 0.00 3.51
2940 3064 4.699735 TGAAAACTGAAGCACAAAGACTGA 59.300 37.500 0.00 0.00 0.00 3.41
2945 3069 5.830912 TGGTATGAAAACTGAAGCACAAAG 58.169 37.500 0.00 0.00 0.00 2.77
2952 3076 9.057089 AGTACTTCTTTGGTATGAAAACTGAAG 57.943 33.333 0.00 0.00 35.78 3.02
2953 3077 8.836413 CAGTACTTCTTTGGTATGAAAACTGAA 58.164 33.333 0.00 0.00 37.87 3.02
2954 3078 7.990886 ACAGTACTTCTTTGGTATGAAAACTGA 59.009 33.333 17.17 0.00 37.87 3.41
2955 3079 8.154649 ACAGTACTTCTTTGGTATGAAAACTG 57.845 34.615 0.00 0.00 39.51 3.16
2956 3080 9.841295 TTACAGTACTTCTTTGGTATGAAAACT 57.159 29.630 0.00 0.00 0.00 2.66
2977 3156 8.702438 CCAGCAAGTTGTTAATGAATTTTACAG 58.298 33.333 4.48 0.00 0.00 2.74
3066 3245 3.762823 AGTGGACAGTAACAGGTAGTAGC 59.237 47.826 0.00 0.00 0.00 3.58
3071 3250 3.840991 AGTCAGTGGACAGTAACAGGTA 58.159 45.455 0.00 0.00 46.80 3.08
3095 3282 5.903764 TGCACAAATATTGCAAAGTTCAC 57.096 34.783 1.71 0.00 46.90 3.18
3106 3293 4.018960 AGTCCCAGAGTCTGCACAAATATT 60.019 41.667 15.10 0.00 0.00 1.28
3207 3394 5.587443 TGCAGGACATATTTCATCACAAGAG 59.413 40.000 0.00 0.00 0.00 2.85
3210 3397 6.587206 TTTGCAGGACATATTTCATCACAA 57.413 33.333 0.00 0.00 0.00 3.33
3225 3412 4.842574 TGCTAGTTATCACATTTGCAGGA 58.157 39.130 0.00 0.00 0.00 3.86
3300 3487 8.988064 TTCAGAGATGATTTACAGTTCAGTAC 57.012 34.615 0.00 0.00 0.00 2.73
3301 3488 7.761704 GCTTCAGAGATGATTTACAGTTCAGTA 59.238 37.037 0.00 0.00 0.00 2.74
3392 3579 5.662674 AGGCTACTCGAAGAAATAACAGT 57.337 39.130 0.00 0.00 34.09 3.55
3406 3593 6.043411 CACTGATTAAGTACCAAGGCTACTC 58.957 44.000 0.00 0.00 36.83 2.59
3409 3596 5.730550 CACACTGATTAAGTACCAAGGCTA 58.269 41.667 0.00 0.00 36.83 3.93
3411 3598 3.127030 GCACACTGATTAAGTACCAAGGC 59.873 47.826 0.00 0.00 36.83 4.35
3432 3619 1.153208 CCTGCAGGTCAGAGGATGC 60.153 63.158 25.53 0.00 45.72 3.91
3491 3678 0.250513 GTCTGCGTCTTCCCCATCTT 59.749 55.000 0.00 0.00 0.00 2.40
3727 3914 1.881591 TGGAAAATGCAAAGCCAAGC 58.118 45.000 0.00 0.00 0.00 4.01
3757 3950 1.337703 TGTCAGACCAGTTTGCAATGC 59.662 47.619 0.00 0.00 0.00 3.56
3876 4069 3.808728 TCTGAAAGCACTTACTTGCACT 58.191 40.909 0.00 0.00 45.62 4.40
3931 4139 6.971184 GGCAAAATCAAGTGAGATTAGTCATG 59.029 38.462 0.00 0.00 37.24 3.07
3941 4149 4.021719 AGTTCCATGGCAAAATCAAGTGAG 60.022 41.667 6.96 0.00 0.00 3.51
3963 4171 2.509336 CGCGCTGGTCCCTGTAAG 60.509 66.667 5.56 0.00 0.00 2.34
4049 4257 5.237779 GGCAGGCGCTAGTTTAACAATTATA 59.762 40.000 7.64 0.00 38.60 0.98
4051 4259 3.375922 GGCAGGCGCTAGTTTAACAATTA 59.624 43.478 7.64 0.00 38.60 1.40
4053 4261 1.743394 GGCAGGCGCTAGTTTAACAAT 59.257 47.619 7.64 0.00 38.60 2.71
4054 4262 1.161843 GGCAGGCGCTAGTTTAACAA 58.838 50.000 7.64 0.00 38.60 2.83
4055 4263 0.323629 AGGCAGGCGCTAGTTTAACA 59.676 50.000 7.64 0.00 38.60 2.41
4056 4264 0.727398 CAGGCAGGCGCTAGTTTAAC 59.273 55.000 7.64 0.00 38.60 2.01
4085 4293 6.070021 TCAGACCTCAGATACCATTTGATTGT 60.070 38.462 0.00 0.00 0.00 2.71
4103 4311 5.825151 CAGAAAGAAAAAGGAGTTCAGACCT 59.175 40.000 0.00 0.00 38.23 3.85
4105 4313 6.685527 ACAGAAAGAAAAAGGAGTTCAGAC 57.314 37.500 0.00 0.00 0.00 3.51
4111 4319 6.834168 TGTTGAACAGAAAGAAAAAGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
4137 4345 2.753043 GCACTGGGTCCATGCTGG 60.753 66.667 13.37 0.00 39.43 4.85
4188 4396 7.070571 CCAGATGAGTATCCTAGGATATTTCCC 59.929 44.444 29.92 21.92 39.04 3.97
4200 4408 3.724478 TGTGGAACCAGATGAGTATCCT 58.276 45.455 0.00 0.00 34.36 3.24
4209 4417 3.763897 GCCAGTTATTTGTGGAACCAGAT 59.236 43.478 0.00 0.00 35.67 2.90
4290 4498 9.767684 CGAAAAATGCAACTTGTCAGTATATTA 57.232 29.630 0.00 0.00 30.68 0.98
4291 4499 7.273381 GCGAAAAATGCAACTTGTCAGTATATT 59.727 33.333 0.00 0.00 30.68 1.28
4292 4500 6.747280 GCGAAAAATGCAACTTGTCAGTATAT 59.253 34.615 0.00 0.00 30.68 0.86
4293 4501 6.072728 AGCGAAAAATGCAACTTGTCAGTATA 60.073 34.615 0.00 0.00 30.68 1.47
4294 4502 4.917415 GCGAAAAATGCAACTTGTCAGTAT 59.083 37.500 0.00 0.00 30.68 2.12
4441 4649 7.095355 CGTTTTATATTATTGGACGGAGGGAAG 60.095 40.741 0.00 0.00 0.00 3.46
4442 4650 6.707161 CGTTTTATATTATTGGACGGAGGGAA 59.293 38.462 0.00 0.00 0.00 3.97
4467 4675 6.307155 GTGCTCGCATATTGGATGTAATAAC 58.693 40.000 0.00 0.00 0.00 1.89
4485 4693 6.034577 TCTCAAGTTTATTTATGACGTGCTCG 59.965 38.462 6.63 6.63 43.34 5.03
4489 4697 9.694520 CTCATTCTCAAGTTTATTTATGACGTG 57.305 33.333 0.00 0.00 0.00 4.49
4591 4803 3.010420 TGAAAACACACATTCACACCGA 58.990 40.909 0.00 0.00 30.94 4.69
4599 4818 3.701040 AGGAACAGCTGAAAACACACATT 59.299 39.130 23.35 0.00 0.00 2.71
4600 4819 3.067180 CAGGAACAGCTGAAAACACACAT 59.933 43.478 23.35 0.00 0.00 3.21
4643 4862 0.173481 TCTCCTTGGCGAAGATCACG 59.827 55.000 10.40 7.74 0.00 4.35
4742 4961 4.047142 GCAAGTTCTTGAAGCCTTTGAAG 58.953 43.478 15.52 0.00 0.00 3.02
4796 5015 4.143333 CGTACCCAGGTGAGGCCG 62.143 72.222 0.00 0.00 43.70 6.13
4822 5041 1.203441 TGAGAGAAGCCCTGGCATGT 61.203 55.000 11.38 0.00 44.88 3.21
4824 5043 0.913451 AGTGAGAGAAGCCCTGGCAT 60.913 55.000 11.38 0.00 44.88 4.40
4825 5044 1.537397 AGTGAGAGAAGCCCTGGCA 60.537 57.895 11.38 0.00 44.88 4.92
4826 5045 1.078567 CAGTGAGAGAAGCCCTGGC 60.079 63.158 0.00 0.00 42.33 4.85
4827 5046 1.561643 TACAGTGAGAGAAGCCCTGG 58.438 55.000 0.00 0.00 0.00 4.45
4828 5047 3.196469 TGAATACAGTGAGAGAAGCCCTG 59.804 47.826 0.00 0.00 0.00 4.45
4829 5048 3.445008 TGAATACAGTGAGAGAAGCCCT 58.555 45.455 0.00 0.00 0.00 5.19
4830 5049 3.791245 CTGAATACAGTGAGAGAAGCCC 58.209 50.000 0.00 0.00 39.11 5.19
4845 5089 4.188462 CGGGTCAGCAACAATACTGAATA 58.812 43.478 0.00 0.00 44.14 1.75
4846 5090 3.009723 CGGGTCAGCAACAATACTGAAT 58.990 45.455 0.00 0.00 44.14 2.57
4847 5091 2.422597 CGGGTCAGCAACAATACTGAA 58.577 47.619 0.00 0.00 44.14 3.02
4848 5092 1.338674 CCGGGTCAGCAACAATACTGA 60.339 52.381 0.00 0.00 40.54 3.41
4849 5093 1.086696 CCGGGTCAGCAACAATACTG 58.913 55.000 0.00 0.00 35.15 2.74
4850 5094 0.676782 GCCGGGTCAGCAACAATACT 60.677 55.000 2.18 0.00 0.00 2.12
4851 5095 1.654023 GGCCGGGTCAGCAACAATAC 61.654 60.000 2.18 0.00 0.00 1.89
4852 5096 1.377987 GGCCGGGTCAGCAACAATA 60.378 57.895 2.18 0.00 0.00 1.90
4853 5097 2.676471 GGCCGGGTCAGCAACAAT 60.676 61.111 2.18 0.00 0.00 2.71
4854 5098 3.884774 AGGCCGGGTCAGCAACAA 61.885 61.111 2.18 0.00 0.00 2.83
4855 5099 4.641645 CAGGCCGGGTCAGCAACA 62.642 66.667 2.18 0.00 0.00 3.33
4856 5100 3.248446 TACAGGCCGGGTCAGCAAC 62.248 63.158 8.08 0.00 0.00 4.17
4857 5101 2.925706 TACAGGCCGGGTCAGCAA 60.926 61.111 8.08 0.00 0.00 3.91
4858 5102 3.702048 GTACAGGCCGGGTCAGCA 61.702 66.667 8.08 0.00 0.00 4.41
4859 5103 3.031417 ATGTACAGGCCGGGTCAGC 62.031 63.158 8.08 0.96 0.00 4.26
4860 5104 1.153369 CATGTACAGGCCGGGTCAG 60.153 63.158 8.08 0.00 0.00 3.51
4861 5105 1.485294 AACATGTACAGGCCGGGTCA 61.485 55.000 7.57 6.29 0.00 4.02
4862 5106 0.322187 AAACATGTACAGGCCGGGTC 60.322 55.000 7.57 0.00 0.00 4.46
4863 5107 0.608035 CAAACATGTACAGGCCGGGT 60.608 55.000 7.57 8.16 0.00 5.28
4864 5108 0.608035 ACAAACATGTACAGGCCGGG 60.608 55.000 7.57 1.20 0.00 5.73
4865 5109 0.521291 CACAAACATGTACAGGCCGG 59.479 55.000 7.57 0.00 0.00 6.13
4866 5110 0.109781 GCACAAACATGTACAGGCCG 60.110 55.000 7.57 0.00 0.00 6.13
4867 5111 0.243636 GGCACAAACATGTACAGGCC 59.756 55.000 7.57 13.55 0.00 5.19
4868 5112 1.068333 CAGGCACAAACATGTACAGGC 60.068 52.381 7.57 2.27 0.00 4.85
4869 5113 1.068333 GCAGGCACAAACATGTACAGG 60.068 52.381 5.87 5.87 0.00 4.00
4870 5114 1.608109 TGCAGGCACAAACATGTACAG 59.392 47.619 0.00 0.00 0.00 2.74
4886 5130 1.673665 GGAACCAGGACAGCTGCAG 60.674 63.158 15.27 10.11 0.00 4.41
5041 5285 5.982356 TGATGGAGGAAGTAGTGAATCTTG 58.018 41.667 0.00 0.00 0.00 3.02
5066 5310 2.312722 CTCCTGGAGCAGACAGAATG 57.687 55.000 11.42 0.00 46.00 2.67
5079 5323 1.395045 TATCACAGCTCCGCTCCTGG 61.395 60.000 0.00 0.00 36.40 4.45
5080 5324 0.031857 CTATCACAGCTCCGCTCCTG 59.968 60.000 0.00 0.00 36.40 3.86
5081 5325 0.106469 TCTATCACAGCTCCGCTCCT 60.106 55.000 0.00 0.00 36.40 3.69
5113 5357 2.246397 CACGCGCAACTGTCAGTG 59.754 61.111 5.73 0.02 0.00 3.66
5216 5460 0.603975 GGCAGACGAGGAAGTTGCTT 60.604 55.000 0.00 0.00 35.23 3.91
5273 5517 1.077930 CCCATGCAGGTCCTGAGTG 60.078 63.158 23.77 18.02 32.44 3.51
5391 5635 2.529744 AAGTGGCGGAAGGGAAGCT 61.530 57.895 0.00 0.00 0.00 3.74
5392 5636 2.034221 AAGTGGCGGAAGGGAAGC 59.966 61.111 0.00 0.00 0.00 3.86
5393 5637 0.035056 ATCAAGTGGCGGAAGGGAAG 60.035 55.000 0.00 0.00 0.00 3.46
5394 5638 0.404040 AATCAAGTGGCGGAAGGGAA 59.596 50.000 0.00 0.00 0.00 3.97
5395 5639 0.404040 AAATCAAGTGGCGGAAGGGA 59.596 50.000 0.00 0.00 0.00 4.20
5396 5640 1.067635 CAAAATCAAGTGGCGGAAGGG 60.068 52.381 0.00 0.00 0.00 3.95
5435 5702 1.210478 CCCCCACTCGTCAGAAATGAT 59.790 52.381 0.00 0.00 0.00 2.45
5452 5719 2.983592 CGGTGCAACAGGAACCCC 60.984 66.667 0.98 0.00 39.98 4.95
5454 5721 2.594592 AGCGGTGCAACAGGAACC 60.595 61.111 0.98 0.00 39.98 3.62
5562 5829 7.025963 CCAACACTGAATGAAGAATAAAGCTC 58.974 38.462 0.00 0.00 0.00 4.09
5564 5831 5.574443 GCCAACACTGAATGAAGAATAAAGC 59.426 40.000 0.00 0.00 0.00 3.51
5634 5901 1.066752 GCACCGTCCAAACAAACCC 59.933 57.895 0.00 0.00 0.00 4.11
5890 6182 3.207669 GCCTTCGCCATGCTCAGG 61.208 66.667 0.00 0.00 0.00 3.86
5924 6216 3.334054 GAGCTGGGCTGGGACCTT 61.334 66.667 0.00 0.00 39.88 3.50
5940 6232 3.246619 GCGAAAATTTGGTAAATGCCGA 58.753 40.909 0.00 0.00 0.00 5.54
5943 6235 5.276820 GCCTATGCGAAAATTTGGTAAATGC 60.277 40.000 0.00 0.00 0.00 3.56
6153 6445 3.394274 TCTTTTCCCCTCACTTGATCACA 59.606 43.478 0.00 0.00 0.00 3.58
6202 6494 2.594303 TGCACCGGAGCAAGGTTG 60.594 61.111 24.92 1.56 42.46 3.77
6263 6555 2.128853 AAAACAGTGCGTCGGCCATG 62.129 55.000 2.24 0.00 38.85 3.66
6264 6556 1.896660 AAAACAGTGCGTCGGCCAT 60.897 52.632 2.24 0.00 38.85 4.40
6265 6557 2.515057 AAAACAGTGCGTCGGCCA 60.515 55.556 2.24 0.00 38.85 5.36
6266 6558 2.051345 CAAAACAGTGCGTCGGCC 60.051 61.111 0.00 0.00 38.85 6.13
6267 6559 1.852067 ATCCAAAACAGTGCGTCGGC 61.852 55.000 0.00 0.00 40.52 5.54
6268 6560 0.110238 CATCCAAAACAGTGCGTCGG 60.110 55.000 0.00 0.00 0.00 4.79
6269 6561 0.865111 TCATCCAAAACAGTGCGTCG 59.135 50.000 0.00 0.00 0.00 5.12
6324 6616 0.732880 AATCGCGTGAGAACGACTGG 60.733 55.000 5.77 0.00 41.76 4.00
6346 6638 5.593909 TCCTTGATGTGAAGCAAAAGAGAAA 59.406 36.000 0.00 0.00 30.69 2.52
6451 6810 3.279434 GAGTCCGCCCTATGTTTTCAAT 58.721 45.455 0.00 0.00 0.00 2.57
6467 6835 0.106149 ACCGTCAACACAAGGAGTCC 59.894 55.000 0.00 0.00 0.00 3.85
6484 6852 1.338020 CAAAGTCTGTTTCTGGCCACC 59.662 52.381 0.00 0.00 0.00 4.61
6512 6885 1.108776 CTGGAAATCAGGCACCATGG 58.891 55.000 11.19 11.19 39.76 3.66
6520 6894 5.221303 TGTTGAAAAAGCTCTGGAAATCAGG 60.221 40.000 0.00 0.00 43.53 3.86
6577 6968 4.882427 TCCTCCGTCTACTGATCTGTAAAG 59.118 45.833 12.82 5.28 0.00 1.85
6627 7023 2.866762 GGCAACCTACAACTGATCGATC 59.133 50.000 18.72 18.72 0.00 3.69
6629 7025 1.621317 TGGCAACCTACAACTGATCGA 59.379 47.619 0.00 0.00 0.00 3.59
6630 7026 2.093306 TGGCAACCTACAACTGATCG 57.907 50.000 0.00 0.00 0.00 3.69
6668 7064 4.380867 GCCCATCAGTGGTTCATTTTACTG 60.381 45.833 0.00 0.00 44.48 2.74
6671 7067 3.096092 GGCCCATCAGTGGTTCATTTTA 58.904 45.455 0.00 0.00 44.48 1.52
6683 7079 2.092538 ACTCAGAATTCAGGCCCATCAG 60.093 50.000 8.44 0.00 0.00 2.90
6701 7097 1.337541 GGACACCGAAACACCCTACTC 60.338 57.143 0.00 0.00 0.00 2.59
6702 7098 0.683412 GGACACCGAAACACCCTACT 59.317 55.000 0.00 0.00 0.00 2.57
6703 7099 0.393820 TGGACACCGAAACACCCTAC 59.606 55.000 0.00 0.00 0.00 3.18
6705 7101 1.450211 CTGGACACCGAAACACCCT 59.550 57.895 0.00 0.00 0.00 4.34
6706 7102 1.599797 CCTGGACACCGAAACACCC 60.600 63.158 0.00 0.00 0.00 4.61
6708 7104 1.227853 AGCCTGGACACCGAAACAC 60.228 57.895 0.00 0.00 0.00 3.32
6709 7105 1.070786 GAGCCTGGACACCGAAACA 59.929 57.895 0.00 0.00 0.00 2.83
6710 7106 0.321653 ATGAGCCTGGACACCGAAAC 60.322 55.000 0.00 0.00 0.00 2.78
6711 7107 0.036388 GATGAGCCTGGACACCGAAA 60.036 55.000 0.00 0.00 0.00 3.46
6712 7108 0.904865 AGATGAGCCTGGACACCGAA 60.905 55.000 0.00 0.00 0.00 4.30
6713 7109 1.305297 AGATGAGCCTGGACACCGA 60.305 57.895 0.00 0.00 0.00 4.69
6714 7110 1.153489 CAGATGAGCCTGGACACCG 60.153 63.158 0.00 0.00 0.00 4.94
6716 7112 1.297689 TGCAGATGAGCCTGGACAC 59.702 57.895 0.00 0.00 34.82 3.67
6717 7113 3.810255 TGCAGATGAGCCTGGACA 58.190 55.556 0.00 0.00 34.82 4.02
6718 7114 4.215349 GTGCAGATGAGCCTGGAC 57.785 61.111 0.00 0.00 45.58 4.02
6719 7115 2.673200 GGGTGCAGATGAGCCTGGA 61.673 63.158 0.00 0.00 34.82 3.86
6720 7116 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
6721 7117 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
6722 7118 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
6723 7119 2.252072 TAACCGGGTGCAGATGAGCC 62.252 60.000 0.00 0.00 0.00 4.70
6724 7120 0.811616 CTAACCGGGTGCAGATGAGC 60.812 60.000 0.00 0.00 0.00 4.26
6726 7122 1.271856 TTCTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
6727 7123 2.107950 TTTCTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
6729 7125 2.871096 ATTTTCTAACCGGGTGCAGA 57.129 45.000 0.00 3.87 0.00 4.26
6730 7126 5.576447 AATTATTTTCTAACCGGGTGCAG 57.424 39.130 0.00 1.10 0.00 4.41
6731 7127 4.095185 CGAATTATTTTCTAACCGGGTGCA 59.905 41.667 0.00 0.00 0.00 4.57
6733 7129 5.806366 ACGAATTATTTTCTAACCGGGTG 57.194 39.130 0.00 0.00 0.00 4.61
6734 7130 7.920160 TTTACGAATTATTTTCTAACCGGGT 57.080 32.000 6.32 0.00 0.00 5.28
6777 7173 7.082700 ACCGCACAAAAAGAATTGAATTTTT 57.917 28.000 0.00 0.00 38.74 1.94
6778 7174 6.676237 ACCGCACAAAAAGAATTGAATTTT 57.324 29.167 0.00 0.00 34.38 1.82
6780 7176 6.744112 TCTACCGCACAAAAAGAATTGAATT 58.256 32.000 0.00 0.00 34.38 2.17
6781 7177 6.325919 TCTACCGCACAAAAAGAATTGAAT 57.674 33.333 0.00 0.00 34.38 2.57
6782 7178 5.759506 TCTACCGCACAAAAAGAATTGAA 57.240 34.783 0.00 0.00 34.38 2.69
6783 7179 5.759506 TTCTACCGCACAAAAAGAATTGA 57.240 34.783 0.00 0.00 34.38 2.57
6784 7180 6.820470 TTTTCTACCGCACAAAAAGAATTG 57.180 33.333 0.00 0.00 36.37 2.32
6785 7181 8.334632 CAAATTTTCTACCGCACAAAAAGAATT 58.665 29.630 0.00 0.00 0.00 2.17
6786 7182 7.708752 TCAAATTTTCTACCGCACAAAAAGAAT 59.291 29.630 0.00 0.00 0.00 2.40
6789 7185 6.820470 TCAAATTTTCTACCGCACAAAAAG 57.180 33.333 0.00 0.00 0.00 2.27
6790 7186 6.292596 GCATCAAATTTTCTACCGCACAAAAA 60.293 34.615 0.00 0.00 0.00 1.94
6791 7187 5.176590 GCATCAAATTTTCTACCGCACAAAA 59.823 36.000 0.00 0.00 0.00 2.44
6792 7188 4.683781 GCATCAAATTTTCTACCGCACAAA 59.316 37.500 0.00 0.00 0.00 2.83
6793 7189 4.233789 GCATCAAATTTTCTACCGCACAA 58.766 39.130 0.00 0.00 0.00 3.33
6794 7190 3.669290 CGCATCAAATTTTCTACCGCACA 60.669 43.478 0.00 0.00 0.00 4.57
6795 7191 2.845967 CGCATCAAATTTTCTACCGCAC 59.154 45.455 0.00 0.00 0.00 5.34
6797 7193 2.845967 CACGCATCAAATTTTCTACCGC 59.154 45.455 0.00 0.00 0.00 5.68
6799 7195 4.662145 CCTCACGCATCAAATTTTCTACC 58.338 43.478 0.00 0.00 0.00 3.18
6800 7196 4.098416 GCCTCACGCATCAAATTTTCTAC 58.902 43.478 0.00 0.00 37.47 2.59
6801 7197 3.128589 GGCCTCACGCATCAAATTTTCTA 59.871 43.478 0.00 0.00 40.31 2.10
6802 7198 2.094545 GGCCTCACGCATCAAATTTTCT 60.095 45.455 0.00 0.00 40.31 2.52
6804 7200 1.895131 AGGCCTCACGCATCAAATTTT 59.105 42.857 0.00 0.00 40.31 1.82
6805 7201 1.203052 CAGGCCTCACGCATCAAATTT 59.797 47.619 0.00 0.00 40.31 1.82
6806 7202 0.813184 CAGGCCTCACGCATCAAATT 59.187 50.000 0.00 0.00 40.31 1.82
6808 7204 2.334946 GCAGGCCTCACGCATCAAA 61.335 57.895 0.00 0.00 40.31 2.69
6809 7205 1.898330 TAGCAGGCCTCACGCATCAA 61.898 55.000 15.36 0.00 40.31 2.57
6810 7206 2.358372 TAGCAGGCCTCACGCATCA 61.358 57.895 15.36 0.00 40.31 3.07
6811 7207 1.884926 GTAGCAGGCCTCACGCATC 60.885 63.158 15.36 4.65 40.31 3.91
6813 7209 2.390306 TTTGTAGCAGGCCTCACGCA 62.390 55.000 15.36 4.59 40.31 5.24
6814 7210 1.026718 ATTTGTAGCAGGCCTCACGC 61.027 55.000 0.00 3.11 0.00 5.34
6815 7211 1.453155 AATTTGTAGCAGGCCTCACG 58.547 50.000 0.00 0.00 0.00 4.35
6816 7212 2.819608 TGAAATTTGTAGCAGGCCTCAC 59.180 45.455 0.00 1.28 0.00 3.51
6818 7214 3.507622 ACTTGAAATTTGTAGCAGGCCTC 59.492 43.478 0.00 0.00 0.00 4.70
6819 7215 3.500343 ACTTGAAATTTGTAGCAGGCCT 58.500 40.909 0.00 0.00 0.00 5.19
6820 7216 3.255642 TGACTTGAAATTTGTAGCAGGCC 59.744 43.478 0.00 0.00 0.00 5.19
6821 7217 4.503741 TGACTTGAAATTTGTAGCAGGC 57.496 40.909 0.00 0.00 0.00 4.85
6822 7218 6.366877 CCAAATGACTTGAAATTTGTAGCAGG 59.633 38.462 0.00 0.00 40.57 4.85
6823 7219 7.147312 TCCAAATGACTTGAAATTTGTAGCAG 58.853 34.615 0.00 0.00 40.57 4.24
6824 7220 7.048629 TCCAAATGACTTGAAATTTGTAGCA 57.951 32.000 0.00 0.00 40.57 3.49
6825 7221 7.945033 TTCCAAATGACTTGAAATTTGTAGC 57.055 32.000 0.00 0.00 40.57 3.58
6828 7224 9.048446 CAGAATTCCAAATGACTTGAAATTTGT 57.952 29.630 0.65 0.00 40.57 2.83
6829 7225 9.263538 TCAGAATTCCAAATGACTTGAAATTTG 57.736 29.630 0.65 0.00 41.41 2.32
6830 7226 9.485206 CTCAGAATTCCAAATGACTTGAAATTT 57.515 29.630 0.65 0.00 37.17 1.82
6832 7228 7.095270 GCTCAGAATTCCAAATGACTTGAAAT 58.905 34.615 0.65 0.00 37.17 2.17
6833 7229 6.040729 TGCTCAGAATTCCAAATGACTTGAAA 59.959 34.615 0.65 0.00 37.17 2.69
6834 7230 5.535783 TGCTCAGAATTCCAAATGACTTGAA 59.464 36.000 0.65 0.00 37.17 2.69
6835 7231 5.072055 TGCTCAGAATTCCAAATGACTTGA 58.928 37.500 0.65 0.00 37.17 3.02
6836 7232 5.048224 ACTGCTCAGAATTCCAAATGACTTG 60.048 40.000 0.65 0.00 34.52 3.16
6838 7234 4.660168 ACTGCTCAGAATTCCAAATGACT 58.340 39.130 0.65 0.00 0.00 3.41
6840 7236 5.319453 AGAACTGCTCAGAATTCCAAATGA 58.681 37.500 0.65 0.00 0.00 2.57
6841 7237 5.638783 GAGAACTGCTCAGAATTCCAAATG 58.361 41.667 0.65 0.00 43.38 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.