Multiple sequence alignment - TraesCS4A01G015900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G015900 chr4A 100.000 4883 0 0 1 4883 9933449 9928567 0.000000e+00 9018
1 TraesCS4A01G015900 chr4A 96.751 708 23 0 4176 4883 9916689 9915982 0.000000e+00 1181
2 TraesCS4A01G015900 chr4D 95.408 1742 60 10 2445 4175 459026087 459027819 0.000000e+00 2756
3 TraesCS4A01G015900 chr4D 90.240 1834 80 33 655 2429 459024240 459026033 0.000000e+00 2303
4 TraesCS4A01G015900 chr4D 90.379 343 24 7 1 339 32722467 32722804 4.490000e-120 442
5 TraesCS4A01G015900 chr4D 95.652 138 6 0 428 565 459024108 459024245 6.360000e-54 222
6 TraesCS4A01G015900 chr4D 92.857 98 7 0 338 435 459009687 459009784 5.090000e-30 143
7 TraesCS4A01G015900 chr4B 92.466 1752 85 21 2445 4175 573274757 573276482 0.000000e+00 2460
8 TraesCS4A01G015900 chr4B 89.945 1810 86 38 676 2429 573272934 573274703 0.000000e+00 2246
9 TraesCS4A01G015900 chr4B 91.837 98 8 0 470 567 573272821 573272918 2.370000e-28 137
10 TraesCS4A01G015900 chr2A 97.599 708 17 0 4176 4883 262746761 262746054 0.000000e+00 1214
11 TraesCS4A01G015900 chr2A 90.265 339 26 3 1 339 39121841 39122172 2.090000e-118 436
12 TraesCS4A01G015900 chr6A 97.034 708 21 0 4176 4883 109951520 109950813 0.000000e+00 1192
13 TraesCS4A01G015900 chr6A 89.796 343 25 8 1 339 170538999 170539335 9.710000e-117 431
14 TraesCS4A01G015900 chr3A 97.034 708 21 0 4176 4883 81449132 81448425 0.000000e+00 1192
15 TraesCS4A01G015900 chr3A 97.159 704 20 0 4180 4883 68235238 68235941 0.000000e+00 1190
16 TraesCS4A01G015900 chr3A 96.751 708 23 0 4176 4883 238015619 238016326 0.000000e+00 1181
17 TraesCS4A01G015900 chr3A 96.615 709 24 0 4175 4883 446122149 446121441 0.000000e+00 1177
18 TraesCS4A01G015900 chr7A 96.761 710 22 1 4175 4883 143162938 143163647 0.000000e+00 1182
19 TraesCS4A01G015900 chr7A 96.751 708 22 1 4176 4883 143175532 143176238 0.000000e+00 1179
20 TraesCS4A01G015900 chr2D 91.471 340 24 5 1 339 71645461 71645126 3.440000e-126 462
21 TraesCS4A01G015900 chr2D 86.286 350 24 11 1 348 43331538 43331865 4.650000e-95 359
22 TraesCS4A01G015900 chr2D 94.624 93 5 0 568 660 99660914 99661006 1.420000e-30 145
23 TraesCS4A01G015900 chr1D 91.445 339 25 3 1 339 35857891 35858225 3.440000e-126 462
24 TraesCS4A01G015900 chr1D 96.774 93 3 0 568 660 250736884 250736976 6.540000e-34 156
25 TraesCS4A01G015900 chr5D 89.412 340 21 8 1 339 473036803 473037128 9.780000e-112 414
26 TraesCS4A01G015900 chr5D 96.774 93 3 0 568 660 8629796 8629888 6.540000e-34 156
27 TraesCS4A01G015900 chr6D 86.176 340 25 10 1 339 449233060 449232742 1.010000e-91 348
28 TraesCS4A01G015900 chr7D 85.714 301 21 11 40 339 440163023 440162744 1.030000e-76 298
29 TraesCS4A01G015900 chr3D 96.809 94 3 0 567 660 276578316 276578223 1.820000e-34 158
30 TraesCS4A01G015900 chr1A 96.774 93 3 0 568 660 371218960 371219052 6.540000e-34 156
31 TraesCS4A01G015900 chr6B 95.699 93 4 0 568 660 239325468 239325376 3.040000e-32 150
32 TraesCS4A01G015900 chr5A 95.699 93 4 0 568 660 523815088 523814996 3.040000e-32 150
33 TraesCS4A01G015900 chr5A 93.814 97 5 1 564 660 645471355 645471450 1.420000e-30 145
34 TraesCS4A01G015900 chr3B 94.624 93 5 0 568 660 30910529 30910437 1.420000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G015900 chr4A 9928567 9933449 4882 True 9018.000000 9018 100.000000 1 4883 1 chr4A.!!$R2 4882
1 TraesCS4A01G015900 chr4A 9915982 9916689 707 True 1181.000000 1181 96.751000 4176 4883 1 chr4A.!!$R1 707
2 TraesCS4A01G015900 chr4D 459024108 459027819 3711 False 1760.333333 2756 93.766667 428 4175 3 chr4D.!!$F3 3747
3 TraesCS4A01G015900 chr4B 573272821 573276482 3661 False 1614.333333 2460 91.416000 470 4175 3 chr4B.!!$F1 3705
4 TraesCS4A01G015900 chr2A 262746054 262746761 707 True 1214.000000 1214 97.599000 4176 4883 1 chr2A.!!$R1 707
5 TraesCS4A01G015900 chr6A 109950813 109951520 707 True 1192.000000 1192 97.034000 4176 4883 1 chr6A.!!$R1 707
6 TraesCS4A01G015900 chr3A 81448425 81449132 707 True 1192.000000 1192 97.034000 4176 4883 1 chr3A.!!$R1 707
7 TraesCS4A01G015900 chr3A 68235238 68235941 703 False 1190.000000 1190 97.159000 4180 4883 1 chr3A.!!$F1 703
8 TraesCS4A01G015900 chr3A 238015619 238016326 707 False 1181.000000 1181 96.751000 4176 4883 1 chr3A.!!$F2 707
9 TraesCS4A01G015900 chr3A 446121441 446122149 708 True 1177.000000 1177 96.615000 4175 4883 1 chr3A.!!$R2 708
10 TraesCS4A01G015900 chr7A 143162938 143163647 709 False 1182.000000 1182 96.761000 4175 4883 1 chr7A.!!$F1 708
11 TraesCS4A01G015900 chr7A 143175532 143176238 706 False 1179.000000 1179 96.751000 4176 4883 1 chr7A.!!$F2 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.031585 GGCTTGGTTTGGTCGGTTTC 59.968 55.0 0.00 0.0 0.00 2.78 F
1324 1376 0.095417 GACGAGATTTGTGCCTTCGC 59.905 55.0 0.00 0.0 0.00 4.70 F
2408 2471 0.180406 GTCGGGGGTGCATTATGAGT 59.820 55.0 0.00 0.0 0.00 3.41 F
2808 2911 1.054406 GGGGGAATCCAGATGACCGA 61.054 60.0 0.09 0.0 37.22 4.69 F
3864 3974 0.980754 TGGTGGACGCCATGGACTAT 60.981 55.0 18.40 0.0 35.28 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1523 0.034756 TTCACTGACATGTGGGTCCG 59.965 55.000 1.15 0.0 38.40 4.79 R
3208 3311 0.991355 AACAGACAGGGTTCCCACCA 60.991 55.000 10.73 0.0 46.43 4.17 R
3864 3974 0.247460 CTCAGAACCCTGACATCGCA 59.753 55.000 0.00 0.0 44.01 5.10 R
3867 3977 1.208293 GGTCCTCAGAACCCTGACATC 59.792 57.143 0.00 0.0 44.01 3.06 R
4669 4798 1.300233 GCTCTATCTTGGGCCGACG 60.300 63.158 0.00 0.0 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.078516 GGACCCGTGCGTAGGCTT 62.079 66.667 9.11 0.00 40.82 4.35
22 23 2.813908 GACCCGTGCGTAGGCTTG 60.814 66.667 9.11 0.93 40.82 4.01
23 24 3.584868 GACCCGTGCGTAGGCTTGT 62.585 63.158 9.11 0.62 40.82 3.16
24 25 2.813908 CCCGTGCGTAGGCTTGTC 60.814 66.667 9.11 0.00 40.82 3.18
25 26 2.813908 CCGTGCGTAGGCTTGTCC 60.814 66.667 9.11 0.00 40.82 4.02
27 28 1.374252 CGTGCGTAGGCTTGTCCTT 60.374 57.895 9.11 0.00 44.75 3.36
28 29 1.352156 CGTGCGTAGGCTTGTCCTTC 61.352 60.000 9.11 0.00 44.75 3.46
29 30 0.320421 GTGCGTAGGCTTGTCCTTCA 60.320 55.000 9.11 0.00 44.75 3.02
30 31 0.394938 TGCGTAGGCTTGTCCTTCAA 59.605 50.000 9.11 0.00 44.75 2.69
43 44 2.713595 TCCTTCAAGGAAAAGGGAGGA 58.286 47.619 2.63 0.00 42.51 3.71
44 45 2.644798 TCCTTCAAGGAAAAGGGAGGAG 59.355 50.000 2.63 0.00 42.51 3.69
45 46 2.291217 CCTTCAAGGAAAAGGGAGGAGG 60.291 54.545 0.00 0.00 39.75 4.30
46 47 1.372501 TCAAGGAAAAGGGAGGAGGG 58.627 55.000 0.00 0.00 0.00 4.30
47 48 0.332972 CAAGGAAAAGGGAGGAGGGG 59.667 60.000 0.00 0.00 0.00 4.79
48 49 0.851332 AAGGAAAAGGGAGGAGGGGG 60.851 60.000 0.00 0.00 0.00 5.40
49 50 1.544151 GGAAAAGGGAGGAGGGGGT 60.544 63.158 0.00 0.00 0.00 4.95
50 51 1.147190 GGAAAAGGGAGGAGGGGGTT 61.147 60.000 0.00 0.00 0.00 4.11
51 52 0.039764 GAAAAGGGAGGAGGGGGTTG 59.960 60.000 0.00 0.00 0.00 3.77
52 53 2.094170 AAAAGGGAGGAGGGGGTTGC 62.094 60.000 0.00 0.00 0.00 4.17
55 56 4.410400 GGAGGAGGGGGTTGCGTG 62.410 72.222 0.00 0.00 0.00 5.34
56 57 3.319198 GAGGAGGGGGTTGCGTGA 61.319 66.667 0.00 0.00 0.00 4.35
57 58 3.316573 GAGGAGGGGGTTGCGTGAG 62.317 68.421 0.00 0.00 0.00 3.51
58 59 4.410400 GGAGGGGGTTGCGTGAGG 62.410 72.222 0.00 0.00 0.00 3.86
101 102 4.447342 GGGTGCATGGAGGGGGTG 62.447 72.222 0.00 0.00 0.00 4.61
102 103 4.447342 GGTGCATGGAGGGGGTGG 62.447 72.222 0.00 0.00 0.00 4.61
103 104 4.447342 GTGCATGGAGGGGGTGGG 62.447 72.222 0.00 0.00 0.00 4.61
106 107 3.420482 CATGGAGGGGGTGGGGAC 61.420 72.222 0.00 0.00 0.00 4.46
120 121 4.097361 GGACCGAAGCCTGGGGAC 62.097 72.222 0.00 0.00 0.00 4.46
121 122 4.452733 GACCGAAGCCTGGGGACG 62.453 72.222 0.00 0.00 0.00 4.79
123 124 4.452733 CCGAAGCCTGGGGACGAC 62.453 72.222 0.00 0.00 0.00 4.34
124 125 4.796231 CGAAGCCTGGGGACGACG 62.796 72.222 0.00 0.00 0.00 5.12
125 126 4.452733 GAAGCCTGGGGACGACGG 62.453 72.222 0.00 0.00 0.00 4.79
162 163 3.330720 GGGGGAGGACCAGGTGTG 61.331 72.222 0.00 0.00 42.91 3.82
163 164 2.203938 GGGGAGGACCAGGTGTGA 60.204 66.667 0.00 0.00 42.91 3.58
164 165 1.616628 GGGGAGGACCAGGTGTGAT 60.617 63.158 0.00 0.00 42.91 3.06
165 166 1.627297 GGGGAGGACCAGGTGTGATC 61.627 65.000 0.00 0.00 42.91 2.92
166 167 1.517832 GGAGGACCAGGTGTGATCG 59.482 63.158 0.00 0.00 35.97 3.69
167 168 1.517832 GAGGACCAGGTGTGATCGG 59.482 63.158 0.00 0.00 0.00 4.18
168 169 1.961180 GAGGACCAGGTGTGATCGGG 61.961 65.000 0.00 0.00 0.00 5.14
169 170 2.584608 GACCAGGTGTGATCGGGG 59.415 66.667 0.00 0.00 0.00 5.73
170 171 3.682292 GACCAGGTGTGATCGGGGC 62.682 68.421 0.00 0.00 0.00 5.80
171 172 4.838152 CCAGGTGTGATCGGGGCG 62.838 72.222 0.00 0.00 0.00 6.13
190 191 3.630148 GTGCGCGATCCATCCGTG 61.630 66.667 12.10 0.00 40.14 4.94
191 192 3.832492 TGCGCGATCCATCCGTGA 61.832 61.111 12.10 0.00 39.61 4.35
192 193 2.356313 GCGCGATCCATCCGTGAT 60.356 61.111 12.10 0.00 39.61 3.06
193 194 1.956170 GCGCGATCCATCCGTGATT 60.956 57.895 12.10 0.00 39.61 2.57
194 195 1.891060 GCGCGATCCATCCGTGATTC 61.891 60.000 12.10 0.00 39.61 2.52
195 196 0.597377 CGCGATCCATCCGTGATTCA 60.597 55.000 0.00 0.00 39.61 2.57
196 197 0.861837 GCGATCCATCCGTGATTCAC 59.138 55.000 6.73 6.73 0.00 3.18
205 206 2.480555 GTGATTCACGCGGGCTTG 59.519 61.111 12.47 0.00 0.00 4.01
206 207 2.745884 TGATTCACGCGGGCTTGG 60.746 61.111 12.47 0.00 0.00 3.61
207 208 2.746277 GATTCACGCGGGCTTGGT 60.746 61.111 12.47 0.00 0.00 3.67
208 209 2.282180 ATTCACGCGGGCTTGGTT 60.282 55.556 12.47 0.00 0.00 3.67
209 210 1.862602 GATTCACGCGGGCTTGGTTT 61.863 55.000 12.47 0.00 0.00 3.27
210 211 2.141122 ATTCACGCGGGCTTGGTTTG 62.141 55.000 12.47 0.00 0.00 2.93
211 212 4.341502 CACGCGGGCTTGGTTTGG 62.342 66.667 12.47 0.00 0.00 3.28
212 213 4.887190 ACGCGGGCTTGGTTTGGT 62.887 61.111 12.47 0.00 0.00 3.67
213 214 4.038080 CGCGGGCTTGGTTTGGTC 62.038 66.667 0.00 0.00 0.00 4.02
214 215 4.038080 GCGGGCTTGGTTTGGTCG 62.038 66.667 0.00 0.00 0.00 4.79
215 216 3.361977 CGGGCTTGGTTTGGTCGG 61.362 66.667 0.00 0.00 0.00 4.79
216 217 2.203437 GGGCTTGGTTTGGTCGGT 60.203 61.111 0.00 0.00 0.00 4.69
217 218 1.830847 GGGCTTGGTTTGGTCGGTT 60.831 57.895 0.00 0.00 0.00 4.44
218 219 1.396607 GGGCTTGGTTTGGTCGGTTT 61.397 55.000 0.00 0.00 0.00 3.27
219 220 0.031585 GGCTTGGTTTGGTCGGTTTC 59.968 55.000 0.00 0.00 0.00 2.78
220 221 0.317519 GCTTGGTTTGGTCGGTTTCG 60.318 55.000 0.00 0.00 37.82 3.46
221 222 0.317519 CTTGGTTTGGTCGGTTTCGC 60.318 55.000 0.00 0.00 36.13 4.70
222 223 2.049475 TTGGTTTGGTCGGTTTCGCG 62.049 55.000 0.00 0.00 36.13 5.87
223 224 2.426261 GTTTGGTCGGTTTCGCGC 60.426 61.111 0.00 0.00 36.13 6.86
224 225 4.003011 TTTGGTCGGTTTCGCGCG 62.003 61.111 26.76 26.76 36.13 6.86
247 248 1.770957 GGAGCTGCTTTCCGTTTTTG 58.229 50.000 2.53 0.00 0.00 2.44
248 249 1.602920 GGAGCTGCTTTCCGTTTTTGG 60.603 52.381 2.53 0.00 0.00 3.28
249 250 0.249447 AGCTGCTTTCCGTTTTTGGC 60.249 50.000 0.00 0.00 0.00 4.52
250 251 1.221466 GCTGCTTTCCGTTTTTGGCC 61.221 55.000 0.00 0.00 0.00 5.36
251 252 0.939106 CTGCTTTCCGTTTTTGGCCG 60.939 55.000 0.00 0.00 0.00 6.13
252 253 1.066752 GCTTTCCGTTTTTGGCCGT 59.933 52.632 0.00 0.00 0.00 5.68
253 254 0.937699 GCTTTCCGTTTTTGGCCGTC 60.938 55.000 0.00 0.00 0.00 4.79
254 255 0.666374 CTTTCCGTTTTTGGCCGTCT 59.334 50.000 0.00 0.00 0.00 4.18
255 256 0.382515 TTTCCGTTTTTGGCCGTCTG 59.617 50.000 0.00 0.00 0.00 3.51
256 257 1.448922 TTCCGTTTTTGGCCGTCTGG 61.449 55.000 0.00 0.00 38.77 3.86
257 258 2.190841 CCGTTTTTGGCCGTCTGGT 61.191 57.895 0.00 0.00 37.67 4.00
258 259 1.281656 CGTTTTTGGCCGTCTGGTC 59.718 57.895 0.00 0.00 41.64 4.02
282 283 4.717313 GCGGGCGGTTCCTTCCTT 62.717 66.667 0.00 0.00 34.39 3.36
283 284 2.033602 CGGGCGGTTCCTTCCTTT 59.966 61.111 0.00 0.00 34.39 3.11
284 285 1.602605 CGGGCGGTTCCTTCCTTTT 60.603 57.895 0.00 0.00 34.39 2.27
285 286 1.583495 CGGGCGGTTCCTTCCTTTTC 61.583 60.000 0.00 0.00 34.39 2.29
286 287 0.251209 GGGCGGTTCCTTCCTTTTCT 60.251 55.000 0.00 0.00 34.39 2.52
287 288 0.881796 GGCGGTTCCTTCCTTTTCTG 59.118 55.000 0.00 0.00 0.00 3.02
288 289 0.881796 GCGGTTCCTTCCTTTTCTGG 59.118 55.000 0.00 0.00 0.00 3.86
289 290 1.534729 CGGTTCCTTCCTTTTCTGGG 58.465 55.000 0.00 0.00 0.00 4.45
290 291 1.073284 CGGTTCCTTCCTTTTCTGGGA 59.927 52.381 0.00 0.00 0.00 4.37
291 292 2.796557 GGTTCCTTCCTTTTCTGGGAG 58.203 52.381 0.00 0.00 34.06 4.30
292 293 2.375509 GGTTCCTTCCTTTTCTGGGAGA 59.624 50.000 0.00 0.00 34.60 3.71
293 294 3.560239 GGTTCCTTCCTTTTCTGGGAGAG 60.560 52.174 0.00 0.00 34.60 3.20
294 295 1.630878 TCCTTCCTTTTCTGGGAGAGC 59.369 52.381 0.00 0.00 34.60 4.09
295 296 1.677217 CCTTCCTTTTCTGGGAGAGCG 60.677 57.143 0.00 0.00 34.60 5.03
296 297 0.321653 TTCCTTTTCTGGGAGAGCGC 60.322 55.000 0.00 0.00 34.06 5.92
297 298 1.194781 TCCTTTTCTGGGAGAGCGCT 61.195 55.000 11.27 11.27 0.00 5.92
298 299 0.742635 CCTTTTCTGGGAGAGCGCTC 60.743 60.000 30.01 30.01 40.54 5.03
299 300 1.079819 TTTTCTGGGAGAGCGCTCG 60.080 57.895 30.39 16.68 42.25 5.03
300 301 2.507110 TTTTCTGGGAGAGCGCTCGG 62.507 60.000 30.39 18.52 42.25 4.63
385 386 2.661054 TCCGTCCGGACATTTGAGA 58.339 52.632 32.80 16.12 39.76 3.27
386 387 0.245539 TCCGTCCGGACATTTGAGAC 59.754 55.000 32.80 4.66 39.76 3.36
387 388 2.359792 CGTCCGGACATTTGAGACG 58.640 57.895 32.80 13.57 43.52 4.18
388 389 3.806591 GTCCGGACATTTGAGACGA 57.193 52.632 29.75 0.00 0.00 4.20
389 390 1.630148 GTCCGGACATTTGAGACGAG 58.370 55.000 29.75 0.00 0.00 4.18
390 391 1.201647 GTCCGGACATTTGAGACGAGA 59.798 52.381 29.75 0.00 0.00 4.04
391 392 1.890489 TCCGGACATTTGAGACGAGAA 59.110 47.619 0.00 0.00 0.00 2.87
392 393 2.094700 TCCGGACATTTGAGACGAGAAG 60.095 50.000 0.00 0.00 0.00 2.85
393 394 1.656095 CGGACATTTGAGACGAGAAGC 59.344 52.381 0.00 0.00 0.00 3.86
394 395 2.688507 GGACATTTGAGACGAGAAGCA 58.311 47.619 0.00 0.00 0.00 3.91
395 396 2.413453 GGACATTTGAGACGAGAAGCAC 59.587 50.000 0.00 0.00 0.00 4.40
396 397 3.059884 GACATTTGAGACGAGAAGCACA 58.940 45.455 0.00 0.00 0.00 4.57
397 398 2.802816 ACATTTGAGACGAGAAGCACAC 59.197 45.455 0.00 0.00 0.00 3.82
398 399 1.865865 TTTGAGACGAGAAGCACACC 58.134 50.000 0.00 0.00 0.00 4.16
399 400 0.318699 TTGAGACGAGAAGCACACCG 60.319 55.000 0.00 0.00 0.00 4.94
400 401 1.170290 TGAGACGAGAAGCACACCGA 61.170 55.000 0.00 0.00 0.00 4.69
401 402 0.171455 GAGACGAGAAGCACACCGAT 59.829 55.000 0.00 0.00 0.00 4.18
402 403 0.603569 AGACGAGAAGCACACCGATT 59.396 50.000 0.00 0.00 0.00 3.34
403 404 1.000955 AGACGAGAAGCACACCGATTT 59.999 47.619 0.00 0.00 0.00 2.17
404 405 1.126846 GACGAGAAGCACACCGATTTG 59.873 52.381 0.00 0.00 0.00 2.32
405 406 1.270094 ACGAGAAGCACACCGATTTGA 60.270 47.619 0.00 0.00 0.00 2.69
406 407 1.391485 CGAGAAGCACACCGATTTGAG 59.609 52.381 0.00 0.00 0.00 3.02
407 408 1.734465 GAGAAGCACACCGATTTGAGG 59.266 52.381 0.00 0.00 0.00 3.86
408 409 0.169009 GAAGCACACCGATTTGAGGC 59.831 55.000 0.00 0.00 0.00 4.70
409 410 1.577328 AAGCACACCGATTTGAGGCG 61.577 55.000 0.00 0.00 0.00 5.52
410 411 2.325082 GCACACCGATTTGAGGCGT 61.325 57.895 0.00 0.00 0.00 5.68
411 412 1.017177 GCACACCGATTTGAGGCGTA 61.017 55.000 0.00 0.00 0.00 4.42
412 413 1.434555 CACACCGATTTGAGGCGTAA 58.565 50.000 0.00 0.00 0.00 3.18
413 414 2.006888 CACACCGATTTGAGGCGTAAT 58.993 47.619 0.00 0.00 0.00 1.89
414 415 3.191669 CACACCGATTTGAGGCGTAATA 58.808 45.455 0.00 0.00 0.00 0.98
415 416 3.807622 CACACCGATTTGAGGCGTAATAT 59.192 43.478 0.00 0.00 0.00 1.28
416 417 3.807622 ACACCGATTTGAGGCGTAATATG 59.192 43.478 0.00 0.00 0.00 1.78
417 418 2.806244 ACCGATTTGAGGCGTAATATGC 59.194 45.455 0.00 0.00 0.00 3.14
418 419 3.067106 CCGATTTGAGGCGTAATATGCT 58.933 45.455 4.33 0.00 0.00 3.79
419 420 3.123621 CCGATTTGAGGCGTAATATGCTC 59.876 47.826 4.33 1.48 0.00 4.26
420 421 3.990469 CGATTTGAGGCGTAATATGCTCT 59.010 43.478 4.33 0.18 0.00 4.09
421 422 4.449068 CGATTTGAGGCGTAATATGCTCTT 59.551 41.667 4.33 0.00 0.00 2.85
422 423 5.633601 CGATTTGAGGCGTAATATGCTCTTA 59.366 40.000 4.33 0.00 0.00 2.10
423 424 6.400091 CGATTTGAGGCGTAATATGCTCTTAC 60.400 42.308 4.33 0.00 0.00 2.34
424 425 4.929819 TGAGGCGTAATATGCTCTTACA 57.070 40.909 4.33 0.00 0.00 2.41
425 426 5.468540 TGAGGCGTAATATGCTCTTACAT 57.531 39.130 4.33 0.00 0.00 2.29
426 427 6.584185 TGAGGCGTAATATGCTCTTACATA 57.416 37.500 4.33 0.00 36.96 2.29
453 454 1.402968 CACATCTCTTGGCCAATTCCG 59.597 52.381 20.85 7.45 0.00 4.30
568 569 6.089476 TGTTTAATGAACACATATGGTTGCG 58.911 36.000 7.80 0.00 43.13 4.85
569 570 3.781079 AATGAACACATATGGTTGCGG 57.219 42.857 7.80 0.00 0.00 5.69
570 571 2.481289 TGAACACATATGGTTGCGGA 57.519 45.000 7.80 0.00 0.00 5.54
571 572 2.784347 TGAACACATATGGTTGCGGAA 58.216 42.857 7.80 0.00 0.00 4.30
572 573 2.746904 TGAACACATATGGTTGCGGAAG 59.253 45.455 7.80 0.00 0.00 3.46
573 574 2.489938 ACACATATGGTTGCGGAAGT 57.510 45.000 7.80 0.00 0.00 3.01
574 575 3.620427 ACACATATGGTTGCGGAAGTA 57.380 42.857 7.80 0.00 0.00 2.24
575 576 3.267483 ACACATATGGTTGCGGAAGTAC 58.733 45.455 7.80 0.00 0.00 2.73
576 577 3.055385 ACACATATGGTTGCGGAAGTACT 60.055 43.478 7.80 0.00 0.00 2.73
577 578 3.938963 CACATATGGTTGCGGAAGTACTT 59.061 43.478 8.13 8.13 0.00 2.24
578 579 4.034048 CACATATGGTTGCGGAAGTACTTC 59.966 45.833 24.73 24.73 38.80 3.01
579 580 1.722011 ATGGTTGCGGAAGTACTTCG 58.278 50.000 25.44 21.11 40.37 3.79
580 581 0.947180 TGGTTGCGGAAGTACTTCGC 60.947 55.000 29.33 29.33 40.37 4.70
581 582 1.414897 GTTGCGGAAGTACTTCGCG 59.585 57.895 29.58 28.73 39.83 5.87
582 583 1.735198 TTGCGGAAGTACTTCGCGG 60.735 57.895 30.35 22.51 39.83 6.46
583 584 2.144833 TTGCGGAAGTACTTCGCGGA 62.145 55.000 30.35 27.93 39.83 5.54
584 585 2.157073 GCGGAAGTACTTCGCGGAC 61.157 63.158 30.35 19.44 40.37 4.79
585 586 1.866496 CGGAAGTACTTCGCGGACG 60.866 63.158 25.44 19.42 40.37 4.79
594 595 3.694394 TCGCGGACGACGTTTTGC 61.694 61.111 6.13 5.96 45.12 3.68
595 596 3.698463 CGCGGACGACGTTTTGCT 61.698 61.111 0.13 0.00 46.52 3.91
596 597 2.127758 GCGGACGACGTTTTGCTG 60.128 61.111 0.13 0.00 46.52 4.41
597 598 2.591311 GCGGACGACGTTTTGCTGA 61.591 57.895 0.13 0.00 46.52 4.26
598 599 1.928653 CGGACGACGTTTTGCTGAA 59.071 52.632 0.13 0.00 37.93 3.02
599 600 0.382636 CGGACGACGTTTTGCTGAAC 60.383 55.000 0.13 0.00 37.93 3.18
608 609 1.780860 GTTTTGCTGAACGACACATGC 59.219 47.619 0.00 0.00 0.00 4.06
609 610 1.020437 TTTGCTGAACGACACATGCA 58.980 45.000 0.00 0.00 0.00 3.96
610 611 0.307453 TTGCTGAACGACACATGCAC 59.693 50.000 0.00 0.00 0.00 4.57
611 612 1.154599 GCTGAACGACACATGCACG 60.155 57.895 0.00 0.00 0.00 5.34
612 613 1.556591 GCTGAACGACACATGCACGA 61.557 55.000 12.34 0.00 0.00 4.35
613 614 0.161658 CTGAACGACACATGCACGAC 59.838 55.000 12.34 7.41 0.00 4.34
614 615 0.528684 TGAACGACACATGCACGACA 60.529 50.000 12.34 9.28 0.00 4.35
615 616 0.161658 GAACGACACATGCACGACAG 59.838 55.000 12.34 0.00 0.00 3.51
616 617 1.831389 AACGACACATGCACGACAGC 61.831 55.000 12.34 0.00 0.00 4.40
617 618 2.023771 CGACACATGCACGACAGCT 61.024 57.895 0.00 0.00 34.99 4.24
618 619 0.732538 CGACACATGCACGACAGCTA 60.733 55.000 0.00 0.00 34.99 3.32
619 620 1.428448 GACACATGCACGACAGCTAA 58.572 50.000 0.00 0.00 34.99 3.09
620 621 2.002586 GACACATGCACGACAGCTAAT 58.997 47.619 0.00 0.00 34.99 1.73
621 622 2.002586 ACACATGCACGACAGCTAATC 58.997 47.619 0.00 0.00 34.99 1.75
622 623 1.328680 CACATGCACGACAGCTAATCC 59.671 52.381 0.00 0.00 34.99 3.01
623 624 0.940126 CATGCACGACAGCTAATCCC 59.060 55.000 0.00 0.00 34.99 3.85
624 625 0.541392 ATGCACGACAGCTAATCCCA 59.459 50.000 0.00 0.00 34.99 4.37
625 626 0.391130 TGCACGACAGCTAATCCCAC 60.391 55.000 0.00 0.00 34.99 4.61
626 627 1.090052 GCACGACAGCTAATCCCACC 61.090 60.000 0.00 0.00 0.00 4.61
627 628 0.806102 CACGACAGCTAATCCCACCG 60.806 60.000 0.00 0.00 0.00 4.94
628 629 1.883084 CGACAGCTAATCCCACCGC 60.883 63.158 0.00 0.00 0.00 5.68
629 630 1.220749 GACAGCTAATCCCACCGCA 59.779 57.895 0.00 0.00 0.00 5.69
630 631 0.179045 GACAGCTAATCCCACCGCAT 60.179 55.000 0.00 0.00 0.00 4.73
631 632 0.464373 ACAGCTAATCCCACCGCATG 60.464 55.000 0.00 0.00 0.00 4.06
632 633 1.526917 AGCTAATCCCACCGCATGC 60.527 57.895 7.91 7.91 0.00 4.06
633 634 1.526917 GCTAATCCCACCGCATGCT 60.527 57.895 17.13 0.00 0.00 3.79
634 635 1.789078 GCTAATCCCACCGCATGCTG 61.789 60.000 17.13 12.36 0.00 4.41
635 636 1.789078 CTAATCCCACCGCATGCTGC 61.789 60.000 17.13 0.00 40.69 5.25
636 637 2.269520 TAATCCCACCGCATGCTGCT 62.270 55.000 17.13 0.00 42.25 4.24
639 640 3.807538 CCACCGCATGCTGCTGTC 61.808 66.667 17.13 0.00 38.77 3.51
640 641 2.745100 CACCGCATGCTGCTGTCT 60.745 61.111 17.13 0.00 38.77 3.41
641 642 1.448365 CACCGCATGCTGCTGTCTA 60.448 57.895 17.13 0.00 38.77 2.59
642 643 1.153489 ACCGCATGCTGCTGTCTAG 60.153 57.895 17.13 0.00 35.99 2.43
643 644 1.142531 CCGCATGCTGCTGTCTAGA 59.857 57.895 17.13 0.00 42.25 2.43
644 645 1.150567 CCGCATGCTGCTGTCTAGAC 61.151 60.000 17.13 16.32 42.25 2.59
645 646 0.179116 CGCATGCTGCTGTCTAGACT 60.179 55.000 23.01 0.00 42.25 3.24
646 647 1.066152 CGCATGCTGCTGTCTAGACTA 59.934 52.381 23.01 9.26 42.25 2.59
647 648 2.288091 CGCATGCTGCTGTCTAGACTAT 60.288 50.000 23.01 6.09 42.25 2.12
648 649 3.316283 GCATGCTGCTGTCTAGACTATC 58.684 50.000 23.01 12.32 40.96 2.08
649 650 3.243670 GCATGCTGCTGTCTAGACTATCA 60.244 47.826 23.01 15.72 40.96 2.15
650 651 4.738839 GCATGCTGCTGTCTAGACTATCAA 60.739 45.833 23.01 2.10 40.96 2.57
651 652 5.354767 CATGCTGCTGTCTAGACTATCAAA 58.645 41.667 23.01 6.40 0.00 2.69
652 653 5.604758 TGCTGCTGTCTAGACTATCAAAT 57.395 39.130 23.01 0.00 0.00 2.32
653 654 5.354767 TGCTGCTGTCTAGACTATCAAATG 58.645 41.667 23.01 8.18 0.00 2.32
654 655 5.105187 TGCTGCTGTCTAGACTATCAAATGT 60.105 40.000 23.01 0.00 0.00 2.71
655 656 6.096846 TGCTGCTGTCTAGACTATCAAATGTA 59.903 38.462 23.01 4.78 0.00 2.29
656 657 7.151308 GCTGCTGTCTAGACTATCAAATGTAT 58.849 38.462 23.01 0.00 0.00 2.29
657 658 7.116090 GCTGCTGTCTAGACTATCAAATGTATG 59.884 40.741 23.01 6.46 0.00 2.39
713 717 2.277756 CGAACCCCGACGACGATC 60.278 66.667 9.28 1.02 42.66 3.69
717 721 3.593794 CCCCGACGACGATCCCTC 61.594 72.222 9.28 0.00 42.66 4.30
809 813 0.598562 ACGCATCGCTATCGGAATCT 59.401 50.000 0.00 0.00 36.13 2.40
815 819 0.962489 CGCTATCGGAATCTGGACCT 59.038 55.000 0.00 0.00 0.00 3.85
833 837 1.841663 CTTTTCCACGTCACGGCCAG 61.842 60.000 2.24 0.00 0.00 4.85
913 935 0.962356 GTGCCAATCCCACACTCCAG 60.962 60.000 0.00 0.00 33.50 3.86
941 967 2.022035 TCTCATCCATCTAACCACCCCT 60.022 50.000 0.00 0.00 0.00 4.79
970 996 3.894947 GCTCCGTCTCCCTCGCTC 61.895 72.222 0.00 0.00 0.00 5.03
1143 1192 3.255379 GAGATGCCGCCGTTCGAC 61.255 66.667 0.00 0.00 41.67 4.20
1247 1296 2.025510 ACTACTACCAGAAGCCGGTACT 60.026 50.000 1.90 0.00 37.99 2.73
1249 1298 2.254508 ACTACCAGAAGCCGGTACTTT 58.745 47.619 1.90 0.00 37.99 2.66
1253 1302 2.835764 ACCAGAAGCCGGTACTTTCATA 59.164 45.455 1.90 0.00 34.02 2.15
1254 1303 3.262405 ACCAGAAGCCGGTACTTTCATAA 59.738 43.478 1.90 0.00 34.02 1.90
1255 1304 3.621715 CCAGAAGCCGGTACTTTCATAAC 59.378 47.826 1.90 0.00 0.00 1.89
1256 1305 4.504858 CAGAAGCCGGTACTTTCATAACT 58.495 43.478 1.90 0.00 0.00 2.24
1257 1306 4.567159 CAGAAGCCGGTACTTTCATAACTC 59.433 45.833 1.90 0.00 0.00 3.01
1258 1307 3.160777 AGCCGGTACTTTCATAACTCG 57.839 47.619 1.90 0.00 0.00 4.18
1259 1308 2.494870 AGCCGGTACTTTCATAACTCGT 59.505 45.455 1.90 0.00 0.00 4.18
1260 1309 3.696051 AGCCGGTACTTTCATAACTCGTA 59.304 43.478 1.90 0.00 0.00 3.43
1262 1311 4.443394 GCCGGTACTTTCATAACTCGTATG 59.557 45.833 1.90 0.00 41.02 2.39
1263 1312 4.443394 CCGGTACTTTCATAACTCGTATGC 59.557 45.833 0.00 0.00 39.69 3.14
1264 1313 5.038683 CGGTACTTTCATAACTCGTATGCA 58.961 41.667 0.00 0.00 39.69 3.96
1265 1314 5.690409 CGGTACTTTCATAACTCGTATGCAT 59.310 40.000 3.79 3.79 39.69 3.96
1266 1315 6.859508 CGGTACTTTCATAACTCGTATGCATA 59.140 38.462 1.16 1.16 39.69 3.14
1267 1316 7.541091 CGGTACTTTCATAACTCGTATGCATAT 59.459 37.037 10.16 0.00 39.69 1.78
1275 1324 8.360390 TCATAACTCGTATGCATATTCTTCTGT 58.640 33.333 10.16 0.42 39.69 3.41
1285 1334 4.780324 GCATATTCTTCTGTTGCTTCGTCG 60.780 45.833 0.00 0.00 0.00 5.12
1286 1335 0.859232 TTCTTCTGTTGCTTCGTCGC 59.141 50.000 0.00 0.00 0.00 5.19
1295 1344 4.559386 CTTCGTCGCGGCGATTGC 62.559 66.667 37.64 14.65 40.76 3.56
1298 1347 3.326981 CGTCGCGGCGATTGCATA 61.327 61.111 32.09 0.06 45.35 3.14
1300 1349 1.949133 GTCGCGGCGATTGCATAGA 60.949 57.895 28.95 0.00 45.35 1.98
1301 1350 1.227118 TCGCGGCGATTGCATAGAA 60.227 52.632 22.69 0.00 45.35 2.10
1302 1351 0.808060 TCGCGGCGATTGCATAGAAA 60.808 50.000 22.69 0.00 45.35 2.52
1312 1364 5.277058 GCGATTGCATAGAAAAAGACGAGAT 60.277 40.000 0.00 0.00 42.15 2.75
1313 1365 6.709643 CGATTGCATAGAAAAAGACGAGATT 58.290 36.000 0.00 0.00 0.00 2.40
1315 1367 7.163195 CGATTGCATAGAAAAAGACGAGATTTG 59.837 37.037 0.00 0.00 0.00 2.32
1316 1368 6.801539 TGCATAGAAAAAGACGAGATTTGT 57.198 33.333 0.00 0.00 0.00 2.83
1317 1369 6.602179 TGCATAGAAAAAGACGAGATTTGTG 58.398 36.000 0.00 0.00 0.00 3.33
1318 1370 5.509622 GCATAGAAAAAGACGAGATTTGTGC 59.490 40.000 0.00 0.00 0.00 4.57
1319 1371 4.489679 AGAAAAAGACGAGATTTGTGCC 57.510 40.909 0.00 0.00 0.00 5.01
1320 1372 4.137543 AGAAAAAGACGAGATTTGTGCCT 58.862 39.130 0.00 0.00 0.00 4.75
1321 1373 4.580580 AGAAAAAGACGAGATTTGTGCCTT 59.419 37.500 0.00 0.00 0.00 4.35
1322 1374 4.489679 AAAAGACGAGATTTGTGCCTTC 57.510 40.909 0.00 0.00 0.00 3.46
1323 1375 1.714794 AGACGAGATTTGTGCCTTCG 58.285 50.000 0.00 0.00 0.00 3.79
1324 1376 0.095417 GACGAGATTTGTGCCTTCGC 59.905 55.000 0.00 0.00 0.00 4.70
1330 1382 2.187599 ATTTGTGCCTTCGCGTGCTC 62.188 55.000 5.77 9.37 38.08 4.26
1349 1401 5.123979 GTGCTCGAAACCAATCCTCTTAATT 59.876 40.000 0.00 0.00 0.00 1.40
1379 1431 9.421399 AGGAGGGTAAATAAATTTTGATGTAGG 57.579 33.333 0.00 0.00 0.00 3.18
1380 1432 9.416284 GGAGGGTAAATAAATTTTGATGTAGGA 57.584 33.333 0.00 0.00 0.00 2.94
1418 1470 7.649057 ACTGCATCAATCATCATGTAAGATTG 58.351 34.615 20.95 20.95 46.13 2.67
1440 1492 3.279434 GGTTCGATATTTTGCCACTCCT 58.721 45.455 0.00 0.00 0.00 3.69
1445 1497 5.297547 TCGATATTTTGCCACTCCTATCAC 58.702 41.667 0.00 0.00 0.00 3.06
1461 1513 2.049985 ACTGTCTCGCTCACACGC 60.050 61.111 0.00 0.00 0.00 5.34
1464 1516 3.474034 GTCTCGCTCACACGCTGC 61.474 66.667 0.00 0.00 0.00 5.25
1497 1549 3.189910 CCCACATGTCAGTGAAACATCAG 59.810 47.826 0.00 0.00 42.05 2.90
1501 1553 3.836365 TGTCAGTGAAACATCAGGTGA 57.164 42.857 0.00 0.00 41.43 4.02
1505 1557 3.118445 TCAGTGAAACATCAGGTGACACA 60.118 43.478 8.08 0.00 41.43 3.72
1509 1561 5.360714 AGTGAAACATCAGGTGACACATTTT 59.639 36.000 8.08 0.00 41.43 1.82
1510 1562 6.545666 AGTGAAACATCAGGTGACACATTTTA 59.454 34.615 8.08 0.00 41.43 1.52
1511 1563 7.231317 AGTGAAACATCAGGTGACACATTTTAT 59.769 33.333 8.08 0.00 41.43 1.40
1535 1587 6.757897 TTTTTGAAGGCATCGATATCAAGT 57.242 33.333 0.00 0.00 32.21 3.16
1544 1596 6.037098 GGCATCGATATCAAGTGATACCTAC 58.963 44.000 0.00 0.00 39.57 3.18
1562 1614 9.533253 GATACCTACTAAAACGCCAAATAAGTA 57.467 33.333 0.00 0.00 0.00 2.24
1565 1617 7.223387 ACCTACTAAAACGCCAAATAAGTATCG 59.777 37.037 0.00 0.00 0.00 2.92
1576 1628 6.337356 CCAAATAAGTATCGGTGCCAAATTT 58.663 36.000 0.00 0.00 0.00 1.82
1595 1647 1.819632 CCAAAGGCCCCGATCGAAG 60.820 63.158 18.66 8.40 0.00 3.79
1962 2023 0.402121 ACTTCCTTCCTTCAGTGGCC 59.598 55.000 0.00 0.00 0.00 5.36
1982 2043 3.734293 GCCCAGTGCTACTAGAAGTTACG 60.734 52.174 0.00 0.00 36.87 3.18
1999 2060 0.456221 ACGACATGGATGGACTCGAC 59.544 55.000 6.63 0.00 31.08 4.20
2000 2061 0.455815 CGACATGGATGGACTCGACA 59.544 55.000 0.00 0.00 0.00 4.35
2085 2146 0.672401 TGGGACCGAAGCGAATGAAC 60.672 55.000 0.00 0.00 0.00 3.18
2087 2148 1.134907 GGGACCGAAGCGAATGAACTA 60.135 52.381 0.00 0.00 0.00 2.24
2130 2191 0.673985 CAGCGGGAATCTCGGTATGA 59.326 55.000 6.98 0.00 36.55 2.15
2235 2296 5.029807 TCAGGTGTGTGTCTGATTGTTAA 57.970 39.130 0.00 0.00 35.37 2.01
2361 2422 6.587608 GCAATGCTAAAATTAACACTGAAGCT 59.412 34.615 0.00 0.00 0.00 3.74
2406 2469 0.621082 TTGTCGGGGGTGCATTATGA 59.379 50.000 0.00 0.00 0.00 2.15
2408 2471 0.180406 GTCGGGGGTGCATTATGAGT 59.820 55.000 0.00 0.00 0.00 3.41
2417 2480 4.883585 GGGTGCATTATGAGTTTCATCTCA 59.116 41.667 0.00 0.00 46.39 3.27
2429 2492 9.606631 ATGAGTTTCATCTCAGTTAGTTAATCC 57.393 33.333 2.99 0.00 45.70 3.01
2432 2495 4.945246 TCATCTCAGTTAGTTAATCCGCC 58.055 43.478 0.00 0.00 0.00 6.13
2433 2496 3.814005 TCTCAGTTAGTTAATCCGCCC 57.186 47.619 0.00 0.00 0.00 6.13
2434 2497 3.101437 TCTCAGTTAGTTAATCCGCCCA 58.899 45.455 0.00 0.00 0.00 5.36
2435 2498 3.709653 TCTCAGTTAGTTAATCCGCCCAT 59.290 43.478 0.00 0.00 0.00 4.00
2436 2499 3.804036 TCAGTTAGTTAATCCGCCCATG 58.196 45.455 0.00 0.00 0.00 3.66
2437 2500 3.199071 TCAGTTAGTTAATCCGCCCATGT 59.801 43.478 0.00 0.00 0.00 3.21
2438 2501 4.406326 TCAGTTAGTTAATCCGCCCATGTA 59.594 41.667 0.00 0.00 0.00 2.29
2439 2502 4.750098 CAGTTAGTTAATCCGCCCATGTAG 59.250 45.833 0.00 0.00 0.00 2.74
2440 2503 4.407945 AGTTAGTTAATCCGCCCATGTAGT 59.592 41.667 0.00 0.00 0.00 2.73
2441 2504 3.194005 AGTTAATCCGCCCATGTAGTG 57.806 47.619 0.00 0.00 0.00 2.74
2442 2505 2.504175 AGTTAATCCGCCCATGTAGTGT 59.496 45.455 0.00 0.00 0.00 3.55
2459 2560 2.171003 GTGTGAAAAATGAGGGGAGGG 58.829 52.381 0.00 0.00 0.00 4.30
2519 2620 8.458573 TGACCATCTGTAGTTGTTTAAATTGT 57.541 30.769 0.00 0.00 0.00 2.71
2644 2745 1.797025 CCAGGGAAGTCGAAGAACAC 58.203 55.000 0.00 0.00 39.69 3.32
2706 2807 4.666655 CGCAGAAACTTTCCAAGTATGACG 60.667 45.833 0.00 0.00 41.91 4.35
2805 2908 1.070289 GTACGGGGGAATCCAGATGAC 59.930 57.143 0.09 0.00 37.22 3.06
2808 2911 1.054406 GGGGGAATCCAGATGACCGA 61.054 60.000 0.09 0.00 37.22 4.69
2822 2925 6.071672 CCAGATGACCGAACTCATATATCAGT 60.072 42.308 0.00 0.00 30.62 3.41
2828 2931 7.921214 TGACCGAACTCATATATCAGTTTTCTC 59.079 37.037 3.30 0.19 32.83 2.87
2864 2967 1.642238 TGCAGGGTGTAGGAGGTACTA 59.358 52.381 0.00 0.00 41.55 1.82
2896 2999 1.409427 CCTGGATACCTGAAGTCGGTC 59.591 57.143 0.00 0.00 35.98 4.79
3172 3275 4.623932 TGTAACAACTCCTGAGATTGCT 57.376 40.909 0.22 0.00 0.00 3.91
3208 3311 6.064060 TCAGAAGATCCAGTTCAACACATTT 58.936 36.000 0.00 0.00 0.00 2.32
3250 3353 1.303561 TGGTGGATTGGCTGTGCTC 60.304 57.895 0.00 0.00 0.00 4.26
3447 3555 5.046529 CGATCGATGATTATCCATCCCTTC 58.953 45.833 10.26 0.00 39.71 3.46
3535 3643 1.248486 CTGACAGGACGGAGAAGACA 58.752 55.000 0.00 0.00 0.00 3.41
3600 3708 5.641155 GGGTAATAATTAGCCCACATTCCT 58.359 41.667 14.28 0.00 45.73 3.36
3614 3722 4.103785 CCACATTCCTTACCTCCATGATCT 59.896 45.833 0.00 0.00 0.00 2.75
3625 3733 6.923199 ACCTCCATGATCTCAAAATGTTTT 57.077 33.333 0.00 0.00 0.00 2.43
3636 3744 9.399403 GATCTCAAAATGTTTTCTTCTACAACC 57.601 33.333 0.00 0.00 0.00 3.77
3637 3745 7.712797 TCTCAAAATGTTTTCTTCTACAACCC 58.287 34.615 0.00 0.00 0.00 4.11
3641 3749 5.853572 ATGTTTTCTTCTACAACCCCCTA 57.146 39.130 0.00 0.00 0.00 3.53
3643 3751 6.015991 TGTTTTCTTCTACAACCCCCTAAA 57.984 37.500 0.00 0.00 0.00 1.85
3646 3754 8.226112 TGTTTTCTTCTACAACCCCCTAAAATA 58.774 33.333 0.00 0.00 0.00 1.40
3726 3834 3.326880 ACGTCTTCAGGATAAAACCACCT 59.673 43.478 0.00 0.00 34.02 4.00
3788 3896 1.829222 TCTCCACAAGATCCCCGTTAC 59.171 52.381 0.00 0.00 0.00 2.50
3864 3974 0.980754 TGGTGGACGCCATGGACTAT 60.981 55.000 18.40 0.00 35.28 2.12
3867 3977 1.956170 GGACGCCATGGACTATGCG 60.956 63.158 18.40 13.25 40.05 4.73
3982 4094 0.105964 TAGCATGGTACGTGCCCATC 59.894 55.000 20.66 13.17 40.76 3.51
4011 4123 1.427419 GTCACTGCGTGTTTGCACA 59.573 52.632 8.22 0.00 45.50 4.57
4025 4137 4.462132 TGTTTGCACACAAGGCATGTATAT 59.538 37.500 2.49 0.00 41.46 0.86
4028 4140 4.775236 TGCACACAAGGCATGTATATGTA 58.225 39.130 0.00 0.00 41.46 2.29
4030 4142 5.239087 TGCACACAAGGCATGTATATGTATG 59.761 40.000 0.00 1.48 41.46 2.39
4039 4155 3.385193 TGTATATGTATGCTGCGTGCT 57.615 42.857 11.18 0.27 43.37 4.40
4054 4170 1.671850 CGTGCTCGGGTGACTATGTTT 60.672 52.381 0.00 0.00 0.00 2.83
4059 4175 2.993899 CTCGGGTGACTATGTTTGTGAC 59.006 50.000 0.00 0.00 0.00 3.67
4068 4184 2.748461 ATGTTTGTGACGGTGAAACG 57.252 45.000 0.00 0.00 38.12 3.60
4143 4270 1.406614 GCTGTCTGGCTTATCTGCTGT 60.407 52.381 0.00 0.00 0.00 4.40
4148 4275 4.216257 TGTCTGGCTTATCTGCTGTTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
4407 4536 1.003233 GACTCCAAGAAGCCGGCTT 60.003 57.895 40.90 40.90 39.23 4.35
4495 4624 1.127567 TACAGTGAAGCCTGCCACCT 61.128 55.000 0.00 0.00 35.83 4.00
4502 4631 1.271840 AAGCCTGCCACCTCCGAATA 61.272 55.000 0.00 0.00 0.00 1.75
4579 4708 0.322187 ACTATTGCCACGTTGACCCC 60.322 55.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.387947 CTACGCACGGGTCCCCTT 61.388 66.667 1.00 0.00 0.00 3.95
4 5 4.078516 AAGCCTACGCACGGGTCC 62.079 66.667 0.00 0.00 37.52 4.46
5 6 2.813908 CAAGCCTACGCACGGGTC 60.814 66.667 0.00 0.00 37.52 4.46
6 7 3.584868 GACAAGCCTACGCACGGGT 62.585 63.158 0.00 0.00 37.52 5.28
7 8 2.813908 GACAAGCCTACGCACGGG 60.814 66.667 0.00 0.00 37.52 5.28
8 9 2.813908 GGACAAGCCTACGCACGG 60.814 66.667 0.00 0.00 37.52 4.94
17 18 2.297315 CCTTTTCCTTGAAGGACAAGCC 59.703 50.000 26.93 0.00 46.05 4.35
18 19 2.297315 CCCTTTTCCTTGAAGGACAAGC 59.703 50.000 26.93 0.00 46.05 4.01
19 20 3.823304 CTCCCTTTTCCTTGAAGGACAAG 59.177 47.826 25.88 25.88 45.78 3.16
20 21 3.436470 CCTCCCTTTTCCTTGAAGGACAA 60.436 47.826 14.62 13.07 45.78 3.18
21 22 2.108250 CCTCCCTTTTCCTTGAAGGACA 59.892 50.000 14.62 4.35 45.78 4.02
22 23 2.375509 TCCTCCCTTTTCCTTGAAGGAC 59.624 50.000 14.62 0.00 45.78 3.85
23 24 2.644798 CTCCTCCCTTTTCCTTGAAGGA 59.355 50.000 10.46 10.46 45.25 3.36
24 25 2.291217 CCTCCTCCCTTTTCCTTGAAGG 60.291 54.545 4.45 4.45 42.68 3.46
25 26 2.291217 CCCTCCTCCCTTTTCCTTGAAG 60.291 54.545 0.00 0.00 0.00 3.02
26 27 1.710809 CCCTCCTCCCTTTTCCTTGAA 59.289 52.381 0.00 0.00 0.00 2.69
27 28 1.372501 CCCTCCTCCCTTTTCCTTGA 58.627 55.000 0.00 0.00 0.00 3.02
28 29 0.332972 CCCCTCCTCCCTTTTCCTTG 59.667 60.000 0.00 0.00 0.00 3.61
29 30 0.851332 CCCCCTCCTCCCTTTTCCTT 60.851 60.000 0.00 0.00 0.00 3.36
30 31 1.230314 CCCCCTCCTCCCTTTTCCT 60.230 63.158 0.00 0.00 0.00 3.36
31 32 1.147190 AACCCCCTCCTCCCTTTTCC 61.147 60.000 0.00 0.00 0.00 3.13
32 33 0.039764 CAACCCCCTCCTCCCTTTTC 59.960 60.000 0.00 0.00 0.00 2.29
33 34 2.094170 GCAACCCCCTCCTCCCTTTT 62.094 60.000 0.00 0.00 0.00 2.27
34 35 2.548547 GCAACCCCCTCCTCCCTTT 61.549 63.158 0.00 0.00 0.00 3.11
35 36 2.941583 GCAACCCCCTCCTCCCTT 60.942 66.667 0.00 0.00 0.00 3.95
38 39 4.410400 CACGCAACCCCCTCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
39 40 3.316573 CTCACGCAACCCCCTCCTC 62.317 68.421 0.00 0.00 0.00 3.71
40 41 3.322466 CTCACGCAACCCCCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
41 42 4.410400 CCTCACGCAACCCCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
84 85 4.447342 CACCCCCTCCATGCACCC 62.447 72.222 0.00 0.00 0.00 4.61
85 86 4.447342 CCACCCCCTCCATGCACC 62.447 72.222 0.00 0.00 0.00 5.01
86 87 4.447342 CCCACCCCCTCCATGCAC 62.447 72.222 0.00 0.00 0.00 4.57
89 90 3.420482 GTCCCCACCCCCTCCATG 61.420 72.222 0.00 0.00 0.00 3.66
90 91 4.779486 GGTCCCCACCCCCTCCAT 62.779 72.222 0.00 0.00 36.54 3.41
98 99 4.410400 CAGGCTTCGGTCCCCACC 62.410 72.222 0.00 0.00 39.69 4.61
99 100 4.410400 CCAGGCTTCGGTCCCCAC 62.410 72.222 0.00 0.00 0.00 4.61
103 104 4.097361 GTCCCCAGGCTTCGGTCC 62.097 72.222 0.00 0.00 0.00 4.46
104 105 4.452733 CGTCCCCAGGCTTCGGTC 62.453 72.222 0.00 0.00 0.00 4.79
106 107 4.452733 GTCGTCCCCAGGCTTCGG 62.453 72.222 0.00 0.00 0.00 4.30
107 108 4.796231 CGTCGTCCCCAGGCTTCG 62.796 72.222 0.00 0.00 0.00 3.79
108 109 4.452733 CCGTCGTCCCCAGGCTTC 62.453 72.222 0.00 0.00 0.00 3.86
145 146 3.330720 CACACCTGGTCCTCCCCC 61.331 72.222 0.00 0.00 0.00 5.40
146 147 1.616628 ATCACACCTGGTCCTCCCC 60.617 63.158 0.00 0.00 0.00 4.81
147 148 1.908483 GATCACACCTGGTCCTCCC 59.092 63.158 0.00 0.00 0.00 4.30
148 149 1.517832 CGATCACACCTGGTCCTCC 59.482 63.158 0.00 0.00 0.00 4.30
149 150 1.517832 CCGATCACACCTGGTCCTC 59.482 63.158 0.00 0.00 0.00 3.71
150 151 1.990060 CCCGATCACACCTGGTCCT 60.990 63.158 0.00 0.00 0.00 3.85
151 152 2.584608 CCCGATCACACCTGGTCC 59.415 66.667 0.00 0.00 0.00 4.46
152 153 2.584608 CCCCGATCACACCTGGTC 59.415 66.667 0.00 0.00 0.00 4.02
153 154 3.717294 GCCCCGATCACACCTGGT 61.717 66.667 0.00 0.00 0.00 4.00
154 155 4.838152 CGCCCCGATCACACCTGG 62.838 72.222 0.00 0.00 0.00 4.45
173 174 3.630148 CACGGATGGATCGCGCAC 61.630 66.667 8.75 0.00 0.00 5.34
174 175 2.642996 AATCACGGATGGATCGCGCA 62.643 55.000 8.75 0.00 0.00 6.09
175 176 1.891060 GAATCACGGATGGATCGCGC 61.891 60.000 0.00 0.00 0.00 6.86
176 177 0.597377 TGAATCACGGATGGATCGCG 60.597 55.000 0.00 0.00 0.00 5.87
177 178 0.861837 GTGAATCACGGATGGATCGC 59.138 55.000 0.00 0.00 0.00 4.58
188 189 2.480555 CAAGCCCGCGTGAATCAC 59.519 61.111 4.92 2.75 0.00 3.06
189 190 2.745884 CCAAGCCCGCGTGAATCA 60.746 61.111 4.92 0.00 0.00 2.57
190 191 1.862602 AAACCAAGCCCGCGTGAATC 61.863 55.000 4.92 0.00 0.00 2.52
191 192 1.901464 AAACCAAGCCCGCGTGAAT 60.901 52.632 4.92 0.00 0.00 2.57
192 193 2.517402 AAACCAAGCCCGCGTGAA 60.517 55.556 4.92 0.00 0.00 3.18
193 194 3.283684 CAAACCAAGCCCGCGTGA 61.284 61.111 4.92 0.00 0.00 4.35
194 195 4.341502 CCAAACCAAGCCCGCGTG 62.342 66.667 4.92 0.00 0.00 5.34
195 196 4.887190 ACCAAACCAAGCCCGCGT 62.887 61.111 4.92 0.00 0.00 6.01
196 197 4.038080 GACCAAACCAAGCCCGCG 62.038 66.667 0.00 0.00 0.00 6.46
197 198 4.038080 CGACCAAACCAAGCCCGC 62.038 66.667 0.00 0.00 0.00 6.13
198 199 3.361977 CCGACCAAACCAAGCCCG 61.362 66.667 0.00 0.00 0.00 6.13
199 200 1.396607 AAACCGACCAAACCAAGCCC 61.397 55.000 0.00 0.00 0.00 5.19
200 201 0.031585 GAAACCGACCAAACCAAGCC 59.968 55.000 0.00 0.00 0.00 4.35
201 202 0.317519 CGAAACCGACCAAACCAAGC 60.318 55.000 0.00 0.00 0.00 4.01
202 203 0.317519 GCGAAACCGACCAAACCAAG 60.318 55.000 0.00 0.00 0.00 3.61
203 204 1.728672 GCGAAACCGACCAAACCAA 59.271 52.632 0.00 0.00 0.00 3.67
204 205 2.535788 CGCGAAACCGACCAAACCA 61.536 57.895 0.00 0.00 0.00 3.67
205 206 2.250190 CGCGAAACCGACCAAACC 59.750 61.111 0.00 0.00 0.00 3.27
206 207 2.426261 GCGCGAAACCGACCAAAC 60.426 61.111 12.10 0.00 0.00 2.93
207 208 4.003011 CGCGCGAAACCGACCAAA 62.003 61.111 28.94 0.00 0.00 3.28
228 229 1.602920 CCAAAAACGGAAAGCAGCTCC 60.603 52.381 0.00 0.00 0.00 4.70
229 230 1.770957 CCAAAAACGGAAAGCAGCTC 58.229 50.000 0.00 0.00 0.00 4.09
230 231 0.249447 GCCAAAAACGGAAAGCAGCT 60.249 50.000 0.00 0.00 0.00 4.24
231 232 1.221466 GGCCAAAAACGGAAAGCAGC 61.221 55.000 0.00 0.00 0.00 5.25
232 233 0.939106 CGGCCAAAAACGGAAAGCAG 60.939 55.000 2.24 0.00 0.00 4.24
233 234 1.066587 CGGCCAAAAACGGAAAGCA 59.933 52.632 2.24 0.00 0.00 3.91
234 235 0.937699 GACGGCCAAAAACGGAAAGC 60.938 55.000 2.24 0.00 0.00 3.51
235 236 0.666374 AGACGGCCAAAAACGGAAAG 59.334 50.000 2.24 0.00 0.00 2.62
236 237 0.382515 CAGACGGCCAAAAACGGAAA 59.617 50.000 2.24 0.00 0.00 3.13
237 238 1.448922 CCAGACGGCCAAAAACGGAA 61.449 55.000 2.24 0.00 0.00 4.30
238 239 1.894756 CCAGACGGCCAAAAACGGA 60.895 57.895 2.24 0.00 0.00 4.69
239 240 2.125202 GACCAGACGGCCAAAAACGG 62.125 60.000 2.24 0.00 34.57 4.44
240 241 1.281656 GACCAGACGGCCAAAAACG 59.718 57.895 2.24 0.00 34.57 3.60
241 242 0.030235 GTGACCAGACGGCCAAAAAC 59.970 55.000 2.24 0.00 34.57 2.43
242 243 1.440938 CGTGACCAGACGGCCAAAAA 61.441 55.000 2.24 0.00 35.65 1.94
243 244 1.890041 CGTGACCAGACGGCCAAAA 60.890 57.895 2.24 0.00 35.65 2.44
244 245 2.280524 CGTGACCAGACGGCCAAA 60.281 61.111 2.24 0.00 35.65 3.28
245 246 4.980805 GCGTGACCAGACGGCCAA 62.981 66.667 2.24 0.00 39.81 4.52
265 266 4.717313 AAGGAAGGAACCGCCCGC 62.717 66.667 0.00 0.00 37.37 6.13
266 267 1.583495 GAAAAGGAAGGAACCGCCCG 61.583 60.000 0.00 0.00 37.37 6.13
267 268 0.251209 AGAAAAGGAAGGAACCGCCC 60.251 55.000 0.00 0.00 37.37 6.13
268 269 0.881796 CAGAAAAGGAAGGAACCGCC 59.118 55.000 0.00 0.00 34.73 6.13
269 270 0.881796 CCAGAAAAGGAAGGAACCGC 59.118 55.000 0.00 0.00 34.73 5.68
270 271 1.073284 TCCCAGAAAAGGAAGGAACCG 59.927 52.381 0.00 0.00 34.73 4.44
271 272 2.375509 TCTCCCAGAAAAGGAAGGAACC 59.624 50.000 0.00 0.00 31.49 3.62
272 273 3.680490 CTCTCCCAGAAAAGGAAGGAAC 58.320 50.000 0.00 0.00 31.49 3.62
273 274 2.040412 GCTCTCCCAGAAAAGGAAGGAA 59.960 50.000 0.00 0.00 31.49 3.36
274 275 1.630878 GCTCTCCCAGAAAAGGAAGGA 59.369 52.381 0.00 0.00 31.49 3.36
275 276 1.677217 CGCTCTCCCAGAAAAGGAAGG 60.677 57.143 0.00 0.00 31.49 3.46
276 277 1.731720 CGCTCTCCCAGAAAAGGAAG 58.268 55.000 0.00 0.00 31.49 3.46
277 278 0.321653 GCGCTCTCCCAGAAAAGGAA 60.322 55.000 0.00 0.00 31.49 3.36
278 279 1.194781 AGCGCTCTCCCAGAAAAGGA 61.195 55.000 2.64 0.00 0.00 3.36
279 280 0.742635 GAGCGCTCTCCCAGAAAAGG 60.743 60.000 29.88 0.00 33.19 3.11
280 281 1.080995 CGAGCGCTCTCCCAGAAAAG 61.081 60.000 32.88 11.25 35.94 2.27
281 282 1.079819 CGAGCGCTCTCCCAGAAAA 60.080 57.895 32.88 0.00 35.94 2.29
282 283 2.573869 CGAGCGCTCTCCCAGAAA 59.426 61.111 32.88 0.00 35.94 2.52
283 284 3.452786 CCGAGCGCTCTCCCAGAA 61.453 66.667 32.88 0.00 35.94 3.02
341 342 1.392168 CGCTCGCTGACCGATTAAAAA 59.608 47.619 0.00 0.00 46.31 1.94
342 343 0.996462 CGCTCGCTGACCGATTAAAA 59.004 50.000 0.00 0.00 46.31 1.52
343 344 0.804544 CCGCTCGCTGACCGATTAAA 60.805 55.000 0.00 0.00 46.31 1.52
344 345 1.226859 CCGCTCGCTGACCGATTAA 60.227 57.895 0.00 0.00 46.31 1.40
345 346 2.411701 CCGCTCGCTGACCGATTA 59.588 61.111 0.00 0.00 46.31 1.75
346 347 4.514577 CCCGCTCGCTGACCGATT 62.515 66.667 0.00 0.00 46.31 3.34
367 368 0.245539 GTCTCAAATGTCCGGACGGA 59.754 55.000 28.70 20.72 42.90 4.69
368 369 1.076533 CGTCTCAAATGTCCGGACGG 61.077 60.000 28.70 17.82 43.69 4.79
369 370 2.359792 CGTCTCAAATGTCCGGACG 58.640 57.895 28.70 15.04 42.38 4.79
370 371 1.201647 TCTCGTCTCAAATGTCCGGAC 59.798 52.381 28.17 28.17 0.00 4.79
371 372 1.541379 TCTCGTCTCAAATGTCCGGA 58.459 50.000 0.00 0.00 0.00 5.14
372 373 2.263077 CTTCTCGTCTCAAATGTCCGG 58.737 52.381 0.00 0.00 0.00 5.14
373 374 1.656095 GCTTCTCGTCTCAAATGTCCG 59.344 52.381 0.00 0.00 0.00 4.79
374 375 2.413453 GTGCTTCTCGTCTCAAATGTCC 59.587 50.000 0.00 0.00 0.00 4.02
375 376 3.059884 TGTGCTTCTCGTCTCAAATGTC 58.940 45.455 0.00 0.00 0.00 3.06
376 377 2.802816 GTGTGCTTCTCGTCTCAAATGT 59.197 45.455 0.00 0.00 0.00 2.71
377 378 2.158449 GGTGTGCTTCTCGTCTCAAATG 59.842 50.000 0.00 0.00 0.00 2.32
378 379 2.417719 GGTGTGCTTCTCGTCTCAAAT 58.582 47.619 0.00 0.00 0.00 2.32
379 380 1.865865 GGTGTGCTTCTCGTCTCAAA 58.134 50.000 0.00 0.00 0.00 2.69
380 381 0.318699 CGGTGTGCTTCTCGTCTCAA 60.319 55.000 0.00 0.00 0.00 3.02
381 382 1.170290 TCGGTGTGCTTCTCGTCTCA 61.170 55.000 0.00 0.00 0.00 3.27
382 383 0.171455 ATCGGTGTGCTTCTCGTCTC 59.829 55.000 0.00 0.00 0.00 3.36
383 384 0.603569 AATCGGTGTGCTTCTCGTCT 59.396 50.000 0.00 0.00 0.00 4.18
384 385 1.126846 CAAATCGGTGTGCTTCTCGTC 59.873 52.381 0.00 0.00 0.00 4.20
385 386 1.148310 CAAATCGGTGTGCTTCTCGT 58.852 50.000 0.00 0.00 0.00 4.18
386 387 1.391485 CTCAAATCGGTGTGCTTCTCG 59.609 52.381 0.00 0.00 0.00 4.04
387 388 1.734465 CCTCAAATCGGTGTGCTTCTC 59.266 52.381 0.00 0.00 0.00 2.87
388 389 1.813513 CCTCAAATCGGTGTGCTTCT 58.186 50.000 0.00 0.00 0.00 2.85
389 390 0.169009 GCCTCAAATCGGTGTGCTTC 59.831 55.000 0.00 0.00 0.00 3.86
390 391 1.577328 CGCCTCAAATCGGTGTGCTT 61.577 55.000 0.00 0.00 0.00 3.91
391 392 2.034879 CGCCTCAAATCGGTGTGCT 61.035 57.895 0.00 0.00 0.00 4.40
392 393 1.017177 TACGCCTCAAATCGGTGTGC 61.017 55.000 5.59 0.00 44.44 4.57
393 394 1.434555 TTACGCCTCAAATCGGTGTG 58.565 50.000 5.59 0.00 44.44 3.82
394 395 2.396590 ATTACGCCTCAAATCGGTGT 57.603 45.000 0.00 0.00 46.29 4.16
395 396 3.363970 GCATATTACGCCTCAAATCGGTG 60.364 47.826 0.00 0.00 38.02 4.94
396 397 2.806244 GCATATTACGCCTCAAATCGGT 59.194 45.455 0.00 0.00 0.00 4.69
397 398 3.067106 AGCATATTACGCCTCAAATCGG 58.933 45.455 0.00 0.00 0.00 4.18
398 399 3.990469 AGAGCATATTACGCCTCAAATCG 59.010 43.478 0.00 0.00 0.00 3.34
399 400 5.931441 AAGAGCATATTACGCCTCAAATC 57.069 39.130 0.00 0.00 0.00 2.17
400 401 6.288294 TGTAAGAGCATATTACGCCTCAAAT 58.712 36.000 0.00 0.00 36.18 2.32
401 402 5.666462 TGTAAGAGCATATTACGCCTCAAA 58.334 37.500 0.00 0.00 36.18 2.69
402 403 5.270893 TGTAAGAGCATATTACGCCTCAA 57.729 39.130 0.00 0.00 36.18 3.02
403 404 4.929819 TGTAAGAGCATATTACGCCTCA 57.070 40.909 0.00 0.00 36.18 3.86
404 405 7.484975 AGATATGTAAGAGCATATTACGCCTC 58.515 38.462 0.00 0.00 40.83 4.70
405 406 7.122799 TGAGATATGTAAGAGCATATTACGCCT 59.877 37.037 0.00 0.00 40.83 5.52
406 407 7.258441 TGAGATATGTAAGAGCATATTACGCC 58.742 38.462 0.00 0.00 40.83 5.68
407 408 8.587950 GTTGAGATATGTAAGAGCATATTACGC 58.412 37.037 0.00 0.00 40.83 4.42
408 409 9.626045 TGTTGAGATATGTAAGAGCATATTACG 57.374 33.333 0.00 0.00 40.83 3.18
412 413 9.650539 GATGTGTTGAGATATGTAAGAGCATAT 57.349 33.333 0.00 0.00 42.72 1.78
413 414 8.864087 AGATGTGTTGAGATATGTAAGAGCATA 58.136 33.333 0.00 0.00 36.01 3.14
414 415 7.733969 AGATGTGTTGAGATATGTAAGAGCAT 58.266 34.615 0.00 0.00 0.00 3.79
415 416 7.069208 AGAGATGTGTTGAGATATGTAAGAGCA 59.931 37.037 0.00 0.00 0.00 4.26
416 417 7.432869 AGAGATGTGTTGAGATATGTAAGAGC 58.567 38.462 0.00 0.00 0.00 4.09
417 418 9.247126 CAAGAGATGTGTTGAGATATGTAAGAG 57.753 37.037 0.00 0.00 0.00 2.85
418 419 8.200120 CCAAGAGATGTGTTGAGATATGTAAGA 58.800 37.037 0.78 0.00 0.00 2.10
419 420 7.042187 GCCAAGAGATGTGTTGAGATATGTAAG 60.042 40.741 0.78 0.00 0.00 2.34
420 421 6.763135 GCCAAGAGATGTGTTGAGATATGTAA 59.237 38.462 0.78 0.00 0.00 2.41
421 422 6.283694 GCCAAGAGATGTGTTGAGATATGTA 58.716 40.000 0.78 0.00 0.00 2.29
422 423 5.121811 GCCAAGAGATGTGTTGAGATATGT 58.878 41.667 0.78 0.00 0.00 2.29
423 424 4.514441 GGCCAAGAGATGTGTTGAGATATG 59.486 45.833 0.00 0.00 0.00 1.78
424 425 4.164796 TGGCCAAGAGATGTGTTGAGATAT 59.835 41.667 0.61 0.00 0.00 1.63
425 426 3.519107 TGGCCAAGAGATGTGTTGAGATA 59.481 43.478 0.61 0.00 0.00 1.98
426 427 2.306805 TGGCCAAGAGATGTGTTGAGAT 59.693 45.455 0.61 0.00 0.00 2.75
436 437 0.106519 CCCGGAATTGGCCAAGAGAT 60.107 55.000 24.94 9.90 0.00 2.75
536 537 3.529634 TGTTCATTAAACAACGCTCCG 57.470 42.857 0.00 0.00 44.83 4.63
545 546 5.514914 CCGCAACCATATGTGTTCATTAAAC 59.485 40.000 1.24 0.00 38.43 2.01
567 568 1.866496 CGTCCGCGAAGTACTTCCG 60.866 63.158 26.12 26.28 41.33 4.30
568 569 1.503542 TCGTCCGCGAAGTACTTCC 59.496 57.895 26.12 18.37 44.92 3.46
577 578 3.694394 GCAAAACGTCGTCCGCGA 61.694 61.111 8.23 0.00 45.79 5.87
578 579 3.698463 AGCAAAACGTCGTCCGCG 61.698 61.111 0.00 0.00 41.42 6.46
579 580 2.096481 TTCAGCAAAACGTCGTCCGC 62.096 55.000 0.00 1.67 41.42 5.54
580 581 0.382636 GTTCAGCAAAACGTCGTCCG 60.383 55.000 0.00 0.00 44.03 4.79
581 582 0.382636 CGTTCAGCAAAACGTCGTCC 60.383 55.000 13.56 0.00 45.24 4.79
582 583 3.038472 CGTTCAGCAAAACGTCGTC 57.962 52.632 13.56 0.00 45.24 4.20
588 589 1.780860 GCATGTGTCGTTCAGCAAAAC 59.219 47.619 0.00 0.00 0.00 2.43
589 590 1.403323 TGCATGTGTCGTTCAGCAAAA 59.597 42.857 0.00 0.00 0.00 2.44
590 591 1.020437 TGCATGTGTCGTTCAGCAAA 58.980 45.000 0.00 0.00 0.00 3.68
591 592 0.307453 GTGCATGTGTCGTTCAGCAA 59.693 50.000 0.00 0.00 33.37 3.91
592 593 1.830368 CGTGCATGTGTCGTTCAGCA 61.830 55.000 0.00 0.00 0.00 4.41
593 594 1.154599 CGTGCATGTGTCGTTCAGC 60.155 57.895 0.00 0.00 0.00 4.26
594 595 0.161658 GTCGTGCATGTGTCGTTCAG 59.838 55.000 5.68 0.00 0.00 3.02
595 596 0.528684 TGTCGTGCATGTGTCGTTCA 60.529 50.000 5.68 0.00 0.00 3.18
596 597 0.161658 CTGTCGTGCATGTGTCGTTC 59.838 55.000 5.68 0.00 0.00 3.95
597 598 1.831389 GCTGTCGTGCATGTGTCGTT 61.831 55.000 5.68 0.00 0.00 3.85
598 599 2.310233 GCTGTCGTGCATGTGTCGT 61.310 57.895 5.68 0.00 0.00 4.34
599 600 0.732538 TAGCTGTCGTGCATGTGTCG 60.733 55.000 5.68 0.00 34.99 4.35
600 601 1.428448 TTAGCTGTCGTGCATGTGTC 58.572 50.000 5.68 0.00 34.99 3.67
601 602 2.002586 GATTAGCTGTCGTGCATGTGT 58.997 47.619 5.68 0.00 34.99 3.72
602 603 1.328680 GGATTAGCTGTCGTGCATGTG 59.671 52.381 5.68 0.00 34.99 3.21
603 604 1.656652 GGATTAGCTGTCGTGCATGT 58.343 50.000 5.68 0.00 34.99 3.21
604 605 0.940126 GGGATTAGCTGTCGTGCATG 59.060 55.000 0.00 0.00 34.99 4.06
605 606 0.541392 TGGGATTAGCTGTCGTGCAT 59.459 50.000 0.00 0.00 34.99 3.96
606 607 0.391130 GTGGGATTAGCTGTCGTGCA 60.391 55.000 0.00 0.00 34.99 4.57
607 608 1.090052 GGTGGGATTAGCTGTCGTGC 61.090 60.000 0.00 0.00 0.00 5.34
608 609 0.806102 CGGTGGGATTAGCTGTCGTG 60.806 60.000 0.00 0.00 0.00 4.35
609 610 1.515954 CGGTGGGATTAGCTGTCGT 59.484 57.895 0.00 0.00 0.00 4.34
610 611 1.883084 GCGGTGGGATTAGCTGTCG 60.883 63.158 0.00 0.00 0.00 4.35
611 612 0.179045 ATGCGGTGGGATTAGCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
612 613 0.464373 CATGCGGTGGGATTAGCTGT 60.464 55.000 0.00 0.00 0.00 4.40
613 614 1.789078 GCATGCGGTGGGATTAGCTG 61.789 60.000 0.00 0.00 0.00 4.24
614 615 1.526917 GCATGCGGTGGGATTAGCT 60.527 57.895 0.00 0.00 0.00 3.32
615 616 1.526917 AGCATGCGGTGGGATTAGC 60.527 57.895 13.01 0.00 0.00 3.09
616 617 2.324215 CAGCATGCGGTGGGATTAG 58.676 57.895 13.01 0.00 36.97 1.73
617 618 4.557554 CAGCATGCGGTGGGATTA 57.442 55.556 13.01 0.00 36.97 1.75
628 629 4.581077 TGATAGTCTAGACAGCAGCATG 57.419 45.455 24.44 0.00 40.87 4.06
629 630 5.604758 TTTGATAGTCTAGACAGCAGCAT 57.395 39.130 24.44 4.78 0.00 3.79
630 631 5.105187 ACATTTGATAGTCTAGACAGCAGCA 60.105 40.000 24.44 14.47 0.00 4.41
631 632 5.355596 ACATTTGATAGTCTAGACAGCAGC 58.644 41.667 24.44 12.16 0.00 5.25
632 633 7.598118 CCATACATTTGATAGTCTAGACAGCAG 59.402 40.741 24.44 10.11 0.00 4.24
633 634 7.069950 ACCATACATTTGATAGTCTAGACAGCA 59.930 37.037 24.44 15.64 0.00 4.41
634 635 7.437748 ACCATACATTTGATAGTCTAGACAGC 58.562 38.462 24.44 13.39 0.00 4.40
635 636 9.254133 CAACCATACATTTGATAGTCTAGACAG 57.746 37.037 24.44 6.40 0.00 3.51
636 637 8.758829 ACAACCATACATTTGATAGTCTAGACA 58.241 33.333 24.44 11.06 0.00 3.41
637 638 9.250624 GACAACCATACATTTGATAGTCTAGAC 57.749 37.037 15.41 15.41 0.00 2.59
638 639 8.977412 TGACAACCATACATTTGATAGTCTAGA 58.023 33.333 0.00 0.00 0.00 2.43
639 640 9.035607 GTGACAACCATACATTTGATAGTCTAG 57.964 37.037 0.00 0.00 0.00 2.43
640 641 7.985184 GGTGACAACCATACATTTGATAGTCTA 59.015 37.037 0.00 0.00 46.75 2.59
641 642 6.823689 GGTGACAACCATACATTTGATAGTCT 59.176 38.462 0.00 0.00 46.75 3.24
642 643 7.016361 GGTGACAACCATACATTTGATAGTC 57.984 40.000 0.00 0.00 46.75 2.59
657 658 1.795170 ATGCTTGCGTGGTGACAACC 61.795 55.000 0.00 0.00 46.06 3.77
815 819 1.890041 CTGGCCGTGACGTGGAAAA 60.890 57.895 3.64 0.00 0.00 2.29
833 837 4.228567 GGCTGGCTCTCCCGTAGC 62.229 72.222 0.00 0.00 39.33 3.58
913 935 4.651503 TGGTTAGATGGATGAGAAGGAGAC 59.348 45.833 0.00 0.00 0.00 3.36
970 996 3.834610 CTGTGGTACTCTACAACCGAAG 58.165 50.000 0.00 0.00 38.70 3.79
1247 1296 9.764363 AGAAGAATATGCATACGAGTTATGAAA 57.236 29.630 8.99 0.00 40.27 2.69
1249 1298 8.360390 ACAGAAGAATATGCATACGAGTTATGA 58.640 33.333 8.99 0.00 40.27 2.15
1253 1302 6.238211 GCAACAGAAGAATATGCATACGAGTT 60.238 38.462 8.99 0.00 37.00 3.01
1254 1303 5.235186 GCAACAGAAGAATATGCATACGAGT 59.765 40.000 8.99 0.00 37.00 4.18
1255 1304 5.464722 AGCAACAGAAGAATATGCATACGAG 59.535 40.000 8.99 0.00 39.42 4.18
1256 1305 5.359756 AGCAACAGAAGAATATGCATACGA 58.640 37.500 8.99 0.00 39.42 3.43
1257 1306 5.663795 AGCAACAGAAGAATATGCATACG 57.336 39.130 8.99 0.00 39.42 3.06
1258 1307 6.132056 CGAAGCAACAGAAGAATATGCATAC 58.868 40.000 8.99 0.00 39.42 2.39
1259 1308 5.817296 ACGAAGCAACAGAAGAATATGCATA 59.183 36.000 9.27 9.27 39.42 3.14
1260 1309 4.637534 ACGAAGCAACAGAAGAATATGCAT 59.362 37.500 3.79 3.79 39.42 3.96
1262 1311 4.582459 GACGAAGCAACAGAAGAATATGC 58.418 43.478 0.00 0.00 37.28 3.14
1263 1312 4.780324 GCGACGAAGCAACAGAAGAATATG 60.780 45.833 0.00 0.00 37.05 1.78
1264 1313 3.307242 GCGACGAAGCAACAGAAGAATAT 59.693 43.478 0.00 0.00 37.05 1.28
1265 1314 2.666508 GCGACGAAGCAACAGAAGAATA 59.333 45.455 0.00 0.00 37.05 1.75
1266 1315 1.461127 GCGACGAAGCAACAGAAGAAT 59.539 47.619 0.00 0.00 37.05 2.40
1267 1316 0.859232 GCGACGAAGCAACAGAAGAA 59.141 50.000 0.00 0.00 37.05 2.52
1285 1334 2.111756 CTTTTTCTATGCAATCGCCGC 58.888 47.619 0.00 0.00 37.32 6.53
1286 1335 3.354397 GTCTTTTTCTATGCAATCGCCG 58.646 45.455 0.00 0.00 37.32 6.46
1295 1344 6.024049 GGCACAAATCTCGTCTTTTTCTATG 58.976 40.000 0.00 0.00 0.00 2.23
1296 1345 5.940470 AGGCACAAATCTCGTCTTTTTCTAT 59.060 36.000 0.00 0.00 0.00 1.98
1297 1346 5.305585 AGGCACAAATCTCGTCTTTTTCTA 58.694 37.500 0.00 0.00 0.00 2.10
1298 1347 4.137543 AGGCACAAATCTCGTCTTTTTCT 58.862 39.130 0.00 0.00 0.00 2.52
1300 1349 4.554723 CGAAGGCACAAATCTCGTCTTTTT 60.555 41.667 0.00 0.00 0.00 1.94
1301 1350 3.058914 CGAAGGCACAAATCTCGTCTTTT 60.059 43.478 0.00 0.00 0.00 2.27
1302 1351 2.480419 CGAAGGCACAAATCTCGTCTTT 59.520 45.455 0.00 0.00 0.00 2.52
1312 1364 2.892334 GAGCACGCGAAGGCACAAA 61.892 57.895 15.93 0.00 39.92 2.83
1313 1365 3.345808 GAGCACGCGAAGGCACAA 61.346 61.111 15.93 0.00 39.92 3.33
1316 1368 4.656117 TTCGAGCACGCGAAGGCA 62.656 61.111 15.93 0.00 44.43 4.75
1321 1373 1.623081 GATTGGTTTCGAGCACGCGA 61.623 55.000 15.93 0.00 39.58 5.87
1322 1374 1.225745 GATTGGTTTCGAGCACGCG 60.226 57.895 3.53 3.53 39.58 6.01
1323 1375 1.134694 GGATTGGTTTCGAGCACGC 59.865 57.895 0.00 0.00 39.58 5.34
1324 1376 0.721718 GAGGATTGGTTTCGAGCACG 59.278 55.000 0.00 0.00 41.26 5.34
1330 1382 8.202137 TCCTACTAATTAAGAGGATTGGTTTCG 58.798 37.037 9.88 0.00 33.05 3.46
1379 1431 6.856135 TTGATGCAGTTCATACATCATCTC 57.144 37.500 5.81 0.00 46.89 2.75
1380 1432 6.996282 TGATTGATGCAGTTCATACATCATCT 59.004 34.615 5.81 0.00 46.89 2.90
1418 1470 2.357952 GGAGTGGCAAAATATCGAACCC 59.642 50.000 0.00 0.00 0.00 4.11
1440 1492 1.130561 CGTGTGAGCGAGACAGTGATA 59.869 52.381 0.00 0.00 0.00 2.15
1445 1497 2.085262 CAGCGTGTGAGCGAGACAG 61.085 63.158 0.00 0.00 43.00 3.51
1467 1519 2.244117 CTGACATGTGGGTCCGGGAG 62.244 65.000 1.15 0.00 36.97 4.30
1468 1520 2.203862 TGACATGTGGGTCCGGGA 60.204 61.111 1.15 0.00 36.97 5.14
1471 1523 0.034756 TTCACTGACATGTGGGTCCG 59.965 55.000 1.15 0.00 38.40 4.79
1481 1533 3.118445 TGTCACCTGATGTTTCACTGACA 60.118 43.478 0.00 0.00 39.71 3.58
1526 1578 8.913656 GCGTTTTAGTAGGTATCACTTGATATC 58.086 37.037 2.31 2.02 39.03 1.63
1535 1587 8.042515 ACTTATTTGGCGTTTTAGTAGGTATCA 58.957 33.333 0.00 0.00 0.00 2.15
1544 1596 6.189567 CACCGATACTTATTTGGCGTTTTAG 58.810 40.000 0.00 0.00 0.00 1.85
1562 1614 2.028203 CCTTTGGAAATTTGGCACCGAT 60.028 45.455 0.00 0.00 0.00 4.18
1565 1617 1.522668 GCCTTTGGAAATTTGGCACC 58.477 50.000 10.71 0.00 42.79 5.01
1576 1628 2.252072 CTTCGATCGGGGCCTTTGGA 62.252 60.000 16.41 0.00 0.00 3.53
1627 1682 8.387190 TGCCATAAATATCTTCAGACATCTTG 57.613 34.615 0.00 0.00 0.00 3.02
1628 1683 8.216423 ACTGCCATAAATATCTTCAGACATCTT 58.784 33.333 0.00 0.00 0.00 2.40
1682 1743 2.932614 AGCTGCGAATACAGATCACAAC 59.067 45.455 0.00 0.00 40.25 3.32
1962 2023 4.155462 TGTCGTAACTTCTAGTAGCACTGG 59.845 45.833 0.00 0.00 0.00 4.00
1982 2043 2.271800 GTTGTCGAGTCCATCCATGTC 58.728 52.381 0.00 0.00 0.00 3.06
1999 2060 1.341531 ACTCACACTCCCTTCTCGTTG 59.658 52.381 0.00 0.00 0.00 4.10
2000 2061 1.341531 CACTCACACTCCCTTCTCGTT 59.658 52.381 0.00 0.00 0.00 3.85
2085 2146 1.600957 CCGAGCCATCAACATTGCTAG 59.399 52.381 0.00 0.00 31.09 3.42
2087 2148 1.660560 GCCGAGCCATCAACATTGCT 61.661 55.000 0.00 0.00 33.66 3.91
2130 2191 5.221106 CGTGGTATCCATTTCTCAATGCAAT 60.221 40.000 0.00 0.00 38.88 3.56
2235 2296 7.175467 TGCAAATCTGTGTCATTTTGTATCTCT 59.825 33.333 0.00 0.00 32.88 3.10
2287 2348 6.727824 AGGTCAATCTTTTCAAGTACATCG 57.272 37.500 0.00 0.00 0.00 3.84
2334 2395 7.754924 GCTTCAGTGTTAATTTTAGCATTGCTA 59.245 33.333 14.33 14.33 40.44 3.49
2335 2396 6.587608 GCTTCAGTGTTAATTTTAGCATTGCT 59.412 34.615 16.63 16.63 43.41 3.91
2336 2397 6.587608 AGCTTCAGTGTTAATTTTAGCATTGC 59.412 34.615 0.00 0.00 33.67 3.56
2337 2398 7.809331 TGAGCTTCAGTGTTAATTTTAGCATTG 59.191 33.333 0.00 4.13 34.50 2.82
2338 2399 7.885297 TGAGCTTCAGTGTTAATTTTAGCATT 58.115 30.769 0.00 0.00 0.00 3.56
2355 2416 8.948631 AGATATCGAAATACTTTTGAGCTTCA 57.051 30.769 0.00 0.00 36.54 3.02
2392 2455 2.733956 TGAAACTCATAATGCACCCCC 58.266 47.619 0.00 0.00 0.00 5.40
2393 2456 4.210331 AGATGAAACTCATAATGCACCCC 58.790 43.478 0.00 0.00 37.20 4.95
2394 2457 4.883585 TGAGATGAAACTCATAATGCACCC 59.116 41.667 0.00 0.00 41.21 4.61
2406 2469 6.535508 GCGGATTAACTAACTGAGATGAAACT 59.464 38.462 0.00 0.00 0.00 2.66
2408 2471 5.815740 GGCGGATTAACTAACTGAGATGAAA 59.184 40.000 0.00 0.00 0.00 2.69
2417 2480 3.926058 ACATGGGCGGATTAACTAACT 57.074 42.857 0.00 0.00 0.00 2.24
2429 2492 3.190327 TCATTTTTCACACTACATGGGCG 59.810 43.478 0.00 0.00 0.00 6.13
2432 2495 4.158394 CCCCTCATTTTTCACACTACATGG 59.842 45.833 0.00 0.00 0.00 3.66
2433 2496 5.009631 TCCCCTCATTTTTCACACTACATG 58.990 41.667 0.00 0.00 0.00 3.21
2434 2497 5.255397 TCCCCTCATTTTTCACACTACAT 57.745 39.130 0.00 0.00 0.00 2.29
2435 2498 4.506625 CCTCCCCTCATTTTTCACACTACA 60.507 45.833 0.00 0.00 0.00 2.74
2436 2499 4.010349 CCTCCCCTCATTTTTCACACTAC 58.990 47.826 0.00 0.00 0.00 2.73
2437 2500 3.010138 CCCTCCCCTCATTTTTCACACTA 59.990 47.826 0.00 0.00 0.00 2.74
2438 2501 2.225117 CCCTCCCCTCATTTTTCACACT 60.225 50.000 0.00 0.00 0.00 3.55
2439 2502 2.171003 CCCTCCCCTCATTTTTCACAC 58.829 52.381 0.00 0.00 0.00 3.82
2440 2503 2.069775 TCCCTCCCCTCATTTTTCACA 58.930 47.619 0.00 0.00 0.00 3.58
2441 2504 2.826128 GTTCCCTCCCCTCATTTTTCAC 59.174 50.000 0.00 0.00 0.00 3.18
2442 2505 2.225267 GGTTCCCTCCCCTCATTTTTCA 60.225 50.000 0.00 0.00 0.00 2.69
2485 2586 8.862325 ACAACTACAGATGGTCATATTGAAAA 57.138 30.769 0.00 0.00 0.00 2.29
2519 2620 9.487442 AGAAATAAATGGCCCATAAGTAAGAAA 57.513 29.630 0.00 0.00 0.00 2.52
2532 2633 4.293415 CTGCGAATGAGAAATAAATGGCC 58.707 43.478 0.00 0.00 0.00 5.36
2644 2745 5.870978 CCTTCCTGAACTGCCAAAATTTATG 59.129 40.000 0.00 0.00 0.00 1.90
2805 2908 8.824159 ATGAGAAAACTGATATATGAGTTCGG 57.176 34.615 16.55 0.00 33.07 4.30
2822 2925 9.361315 CTGCAATCATGTTCATTAATGAGAAAA 57.639 29.630 17.28 0.55 38.19 2.29
2828 2931 5.751509 CACCCTGCAATCATGTTCATTAATG 59.248 40.000 9.29 9.29 0.00 1.90
2864 2967 4.346418 CAGGTATCCAGGAGCTAGTTCAAT 59.654 45.833 8.96 0.00 0.00 2.57
2896 2999 2.351835 CGCCTTCCGGACAGTATCATAG 60.352 54.545 1.83 0.00 0.00 2.23
3172 3275 1.474330 TCTTCTGAGCCATCACGCTA 58.526 50.000 0.00 0.00 39.87 4.26
3208 3311 0.991355 AACAGACAGGGTTCCCACCA 60.991 55.000 10.73 0.00 46.43 4.17
3250 3353 3.386768 TTCTCCTTGTCGAGAACCTTG 57.613 47.619 0.00 0.00 42.58 3.61
3447 3555 1.633852 GACTGAGCAGAAGCAAGGCG 61.634 60.000 4.21 0.00 45.49 5.52
3535 3643 4.021925 GTCTCAGCCTTGGCCGGT 62.022 66.667 8.17 0.00 0.00 5.28
3577 3685 5.641155 AGGAATGTGGGCTAATTATTACCC 58.359 41.667 12.57 12.57 43.14 3.69
3583 3691 5.163131 GGAGGTAAGGAATGTGGGCTAATTA 60.163 44.000 0.00 0.00 0.00 1.40
3584 3692 4.386424 GGAGGTAAGGAATGTGGGCTAATT 60.386 45.833 0.00 0.00 0.00 1.40
3585 3693 3.138468 GGAGGTAAGGAATGTGGGCTAAT 59.862 47.826 0.00 0.00 0.00 1.73
3586 3694 2.508300 GGAGGTAAGGAATGTGGGCTAA 59.492 50.000 0.00 0.00 0.00 3.09
3600 3708 8.421249 AAAACATTTTGAGATCATGGAGGTAA 57.579 30.769 0.00 0.00 0.00 2.85
3614 3722 6.183360 GGGGGTTGTAGAAGAAAACATTTTGA 60.183 38.462 0.00 0.00 0.00 2.69
3625 3733 7.460082 AGAACTATTTTAGGGGGTTGTAGAAGA 59.540 37.037 0.00 0.00 0.00 2.87
3634 3742 6.274908 AGAACAAGAGAACTATTTTAGGGGGT 59.725 38.462 0.00 0.00 0.00 4.95
3636 3744 7.769507 GGTAGAACAAGAGAACTATTTTAGGGG 59.230 40.741 0.00 0.00 0.00 4.79
3637 3745 8.319146 TGGTAGAACAAGAGAACTATTTTAGGG 58.681 37.037 0.00 0.00 0.00 3.53
3641 3749 9.660180 GATCTGGTAGAACAAGAGAACTATTTT 57.340 33.333 0.00 0.00 0.00 1.82
3643 3751 8.602472 AGATCTGGTAGAACAAGAGAACTATT 57.398 34.615 0.00 0.00 0.00 1.73
3646 3754 6.295575 CCAAGATCTGGTAGAACAAGAGAACT 60.296 42.308 0.00 0.00 40.78 3.01
3672 3780 0.669318 CGCCTTTGCCGACTAGAACA 60.669 55.000 0.00 0.00 0.00 3.18
3726 3834 2.176045 TCGTCCTTGGAGAAGCACATA 58.824 47.619 0.00 0.00 0.00 2.29
3788 3896 3.867493 TCTCTACGAGCAATGCAGAAATG 59.133 43.478 8.35 0.00 0.00 2.32
3864 3974 0.247460 CTCAGAACCCTGACATCGCA 59.753 55.000 0.00 0.00 44.01 5.10
3867 3977 1.208293 GGTCCTCAGAACCCTGACATC 59.792 57.143 0.00 0.00 44.01 3.06
4039 4155 2.608506 CGTCACAAACATAGTCACCCGA 60.609 50.000 0.00 0.00 0.00 5.14
4054 4170 1.707239 GGTTGCGTTTCACCGTCACA 61.707 55.000 0.00 0.00 0.00 3.58
4059 4175 1.301874 TAGGGGTTGCGTTTCACCG 60.302 57.895 0.00 0.00 0.00 4.94
4086 4202 6.425735 TCTGATGCTTTCCTCCATTTATTCA 58.574 36.000 0.00 0.00 0.00 2.57
4087 4203 6.949352 TCTGATGCTTTCCTCCATTTATTC 57.051 37.500 0.00 0.00 0.00 1.75
4089 4205 7.686127 GCATTTCTGATGCTTTCCTCCATTTAT 60.686 37.037 3.87 0.00 41.52 1.40
4090 4206 6.406177 GCATTTCTGATGCTTTCCTCCATTTA 60.406 38.462 3.87 0.00 41.52 1.40
4091 4207 5.626116 GCATTTCTGATGCTTTCCTCCATTT 60.626 40.000 3.87 0.00 41.52 2.32
4093 4209 3.383825 GCATTTCTGATGCTTTCCTCCAT 59.616 43.478 3.87 0.00 41.52 3.41
4094 4210 2.756760 GCATTTCTGATGCTTTCCTCCA 59.243 45.455 3.87 0.00 41.52 3.86
4143 4270 8.556589 TGGATTTCAGATATCCCTACAGAAAAA 58.443 33.333 15.30 0.00 40.74 1.94
4148 4275 6.883217 CCATTGGATTTCAGATATCCCTACAG 59.117 42.308 15.30 3.74 40.74 2.74
4207 4335 2.941583 GAAGGGCCAGGGGGAGTT 60.942 66.667 6.18 0.00 35.59 3.01
4208 4336 3.960313 AGAAGGGCCAGGGGGAGT 61.960 66.667 6.18 0.00 35.59 3.85
4305 4434 3.547513 GGGCCGCCTTCCGATAGT 61.548 66.667 9.86 0.00 40.02 2.12
4407 4536 2.167693 ACGATCTTGACCGCTTTATGGA 59.832 45.455 0.00 0.00 0.00 3.41
4563 4692 2.478335 ATCGGGGTCAACGTGGCAAT 62.478 55.000 0.00 0.00 0.00 3.56
4579 4708 1.588932 CCCGTCGTGGATGACATCG 60.589 63.158 9.31 0.00 42.00 3.84
4669 4798 1.300233 GCTCTATCTTGGGCCGACG 60.300 63.158 0.00 0.00 0.00 5.12
4712 4841 1.313812 GGCGTCTTCTTCGAGGGAGA 61.314 60.000 0.43 0.43 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.