Multiple sequence alignment - TraesCS4A01G015800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G015800 chr4A 100.000 5461 0 0 1349 6809 9913578 9908118 0.000000e+00 10085
1 TraesCS4A01G015800 chr4A 100.000 1045 0 0 1 1045 9914926 9913882 0.000000e+00 1930
2 TraesCS4A01G015800 chr4D 97.705 2614 60 0 1349 3962 459054663 459057276 0.000000e+00 4495
3 TraesCS4A01G015800 chr4D 90.203 2021 118 29 3988 5977 459057380 459059351 0.000000e+00 2562
4 TraesCS4A01G015800 chr4D 88.790 562 43 13 198 756 459053772 459054316 0.000000e+00 671
5 TraesCS4A01G015800 chr4D 86.998 523 35 16 6011 6513 459059418 459059927 5.960000e-155 558
6 TraesCS4A01G015800 chr4D 94.760 229 8 1 6569 6793 459059931 459060159 3.020000e-93 353
7 TraesCS4A01G015800 chr4D 94.931 217 11 0 827 1043 459054339 459054555 2.350000e-89 340
8 TraesCS4A01G015800 chr4B 97.475 2614 66 0 1349 3962 573290113 573292726 0.000000e+00 4462
9 TraesCS4A01G015800 chr4B 90.578 2006 123 28 3988 5977 573292830 573294785 0.000000e+00 2597
10 TraesCS4A01G015800 chr4B 86.627 673 65 15 65 732 573289075 573289727 0.000000e+00 721
11 TraesCS4A01G015800 chr4B 90.939 309 21 6 6106 6409 573295530 573295836 6.360000e-110 409
12 TraesCS4A01G015800 chr4B 94.694 245 11 2 6551 6793 573295969 573296213 4.980000e-101 379
13 TraesCS4A01G015800 chr4B 91.566 249 19 1 799 1045 573289758 573290006 6.540000e-90 342
14 TraesCS4A01G015800 chr6A 79.592 245 32 10 4297 4540 554816179 554815952 7.070000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G015800 chr4A 9908118 9914926 6808 True 6007.5 10085 100.000000 1 6809 2 chr4A.!!$R1 6808
1 TraesCS4A01G015800 chr4D 459053772 459060159 6387 False 1496.5 4495 92.231167 198 6793 6 chr4D.!!$F1 6595
2 TraesCS4A01G015800 chr4B 573289075 573296213 7138 False 1485.0 4462 91.979833 65 6793 6 chr4B.!!$F1 6728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 553 0.178924 AAGGGGCTCACATTGGCTTT 60.179 50.000 0.0 0.0 0.00 3.51 F
552 555 0.899717 GGGGCTCACATTGGCTTTCA 60.900 55.000 0.0 0.0 0.00 2.69 F
1775 1789 1.004745 GACCCTGAAGCTGGATTTGGA 59.995 52.381 0.0 0.0 0.00 3.53 F
2259 2273 0.036858 GAAGGAGGTCTGGTGTGCTC 60.037 60.000 0.0 0.0 0.00 4.26 F
2374 2388 1.212935 AGGGATTTCCGGTCAGAATGG 59.787 52.381 0.0 0.0 41.52 3.16 F
2863 2877 1.886886 TCAAGTTACGGTTTGGGAGC 58.113 50.000 0.0 0.0 0.00 4.70 F
3495 3509 2.159170 CGATGAAGGACCTCTTGAGGAC 60.159 54.545 22.1 15.8 35.50 3.85 F
3813 3827 2.164338 GCCCCTTACATCCACGAAAAA 58.836 47.619 0.0 0.0 0.00 1.94 F
5599 5710 0.251916 TGCGGGGACTCATTGTAAGG 59.748 55.000 0.0 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1615 0.179073 CTTCACCTGCCCATACCTCG 60.179 60.000 0.00 0.0 0.00 4.63 R
2132 2146 0.319728 TTCTCTGCTGAGGTGTCTGC 59.680 55.000 19.23 0.0 45.47 4.26 R
2883 2897 0.322975 GGTTGCCAGCTTCTCTCTCA 59.677 55.000 0.00 0.0 0.00 3.27 R
3156 3170 1.078848 GACTGCCAAGCGGACATCT 60.079 57.895 1.69 0.0 38.46 2.90 R
3438 3452 1.202348 GGATTTGGAACTTTGCCCTCG 59.798 52.381 0.00 0.0 0.00 4.63 R
3980 3994 1.958288 AGGTATTGTCAGCAGGAGGT 58.042 50.000 0.00 0.0 0.00 3.85 R
5289 5400 1.067776 AGCCAAGTCGTCTAAGGAACG 60.068 52.381 5.48 0.0 0.00 3.95 R
5667 5787 0.096628 GCAGATTCACAGCTCTTGCG 59.903 55.000 0.00 0.0 45.42 4.85 R
6546 7349 0.467290 TCGCCAGCCAGAACCTTTTT 60.467 50.000 0.00 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.650754 ATAGTAGACCACCGTGAATGAC 57.349 45.455 0.00 0.00 0.00 3.06
32 33 3.159353 CGTGAATGACGGAGATTACCA 57.841 47.619 0.00 0.00 44.85 3.25
33 34 3.517602 CGTGAATGACGGAGATTACCAA 58.482 45.455 0.00 0.00 44.85 3.67
34 35 4.119862 CGTGAATGACGGAGATTACCAAT 58.880 43.478 0.00 0.00 44.85 3.16
35 36 4.209288 CGTGAATGACGGAGATTACCAATC 59.791 45.833 0.00 0.00 44.85 2.67
36 37 5.116180 GTGAATGACGGAGATTACCAATCA 58.884 41.667 2.03 0.00 40.42 2.57
37 38 5.760253 GTGAATGACGGAGATTACCAATCAT 59.240 40.000 2.03 0.00 40.42 2.45
38 39 5.759763 TGAATGACGGAGATTACCAATCATG 59.240 40.000 0.00 0.00 40.42 3.07
39 40 3.466836 TGACGGAGATTACCAATCATGC 58.533 45.455 2.03 0.00 40.42 4.06
40 41 2.808543 GACGGAGATTACCAATCATGCC 59.191 50.000 2.03 0.19 40.42 4.40
41 42 2.172505 ACGGAGATTACCAATCATGCCA 59.827 45.455 2.03 0.00 40.42 4.92
42 43 3.213506 CGGAGATTACCAATCATGCCAA 58.786 45.455 2.03 0.00 40.42 4.52
43 44 3.251729 CGGAGATTACCAATCATGCCAAG 59.748 47.826 2.03 0.00 40.42 3.61
44 45 3.005155 GGAGATTACCAATCATGCCAAGC 59.995 47.826 2.03 0.00 40.42 4.01
45 46 3.633525 GAGATTACCAATCATGCCAAGCA 59.366 43.478 2.03 0.00 40.42 3.91
46 47 3.382546 AGATTACCAATCATGCCAAGCAC 59.617 43.478 0.00 0.00 40.42 4.40
47 48 2.512692 TACCAATCATGCCAAGCACT 57.487 45.000 0.00 0.00 43.04 4.40
48 49 1.636148 ACCAATCATGCCAAGCACTT 58.364 45.000 0.00 0.00 43.04 3.16
49 50 1.547372 ACCAATCATGCCAAGCACTTC 59.453 47.619 0.00 0.00 43.04 3.01
50 51 1.468565 CCAATCATGCCAAGCACTTCG 60.469 52.381 0.00 0.00 43.04 3.79
51 52 0.813184 AATCATGCCAAGCACTTCGG 59.187 50.000 0.00 0.00 43.04 4.30
52 53 0.322816 ATCATGCCAAGCACTTCGGT 60.323 50.000 0.00 0.00 43.04 4.69
53 54 1.210931 CATGCCAAGCACTTCGGTG 59.789 57.895 0.00 0.00 43.04 4.94
97 98 3.967326 ACATAACCACTCTAGCATAGCCA 59.033 43.478 0.00 0.00 38.99 4.75
98 99 2.990066 AACCACTCTAGCATAGCCAC 57.010 50.000 0.00 0.00 38.99 5.01
99 100 1.866015 ACCACTCTAGCATAGCCACA 58.134 50.000 0.00 0.00 38.99 4.17
100 101 1.482593 ACCACTCTAGCATAGCCACAC 59.517 52.381 0.00 0.00 38.99 3.82
101 102 1.202580 CCACTCTAGCATAGCCACACC 60.203 57.143 0.00 0.00 38.99 4.16
102 103 1.482182 CACTCTAGCATAGCCACACCA 59.518 52.381 0.00 0.00 38.99 4.17
103 104 1.759445 ACTCTAGCATAGCCACACCAG 59.241 52.381 0.00 0.00 38.99 4.00
104 105 1.069823 CTCTAGCATAGCCACACCAGG 59.930 57.143 0.00 0.00 38.99 4.45
133 134 1.204941 CTTACTTGACAGGAGGGGTCG 59.795 57.143 0.00 0.00 38.10 4.79
143 144 1.838077 AGGAGGGGTCGTTAATGAAGG 59.162 52.381 0.00 0.00 0.00 3.46
145 146 1.209747 GAGGGGTCGTTAATGAAGGCT 59.790 52.381 0.00 0.00 0.00 4.58
149 150 0.373716 GTCGTTAATGAAGGCTGCCG 59.626 55.000 13.96 0.00 0.00 5.69
150 151 1.062525 CGTTAATGAAGGCTGCCGC 59.937 57.895 13.96 10.30 0.00 6.53
151 152 1.369091 CGTTAATGAAGGCTGCCGCT 61.369 55.000 13.96 4.30 36.09 5.52
156 157 0.399454 ATGAAGGCTGCCGCTGATAT 59.601 50.000 13.96 0.79 36.09 1.63
158 159 0.952984 GAAGGCTGCCGCTGATATCC 60.953 60.000 13.96 0.00 36.09 2.59
159 160 1.699054 AAGGCTGCCGCTGATATCCA 61.699 55.000 13.96 0.00 36.09 3.41
161 162 1.303799 GGCTGCCGCTGATATCCATG 61.304 60.000 1.35 0.00 36.09 3.66
199 200 1.956043 GCAACACCAAGCCAATCGA 59.044 52.632 0.00 0.00 0.00 3.59
219 220 4.889995 TCGACACCATGATGAGATTAGAGT 59.110 41.667 0.00 0.00 0.00 3.24
287 288 7.916128 TGATGTTACCAAAACACAAATAACG 57.084 32.000 0.00 0.00 32.37 3.18
292 293 8.861101 TGTTACCAAAACACAAATAACGAAAAG 58.139 29.630 0.00 0.00 0.00 2.27
293 294 9.074443 GTTACCAAAACACAAATAACGAAAAGA 57.926 29.630 0.00 0.00 0.00 2.52
294 295 7.514573 ACCAAAACACAAATAACGAAAAGAC 57.485 32.000 0.00 0.00 0.00 3.01
295 296 6.532302 ACCAAAACACAAATAACGAAAAGACC 59.468 34.615 0.00 0.00 0.00 3.85
297 298 4.841443 ACACAAATAACGAAAAGACCCC 57.159 40.909 0.00 0.00 0.00 4.95
298 299 3.570975 ACACAAATAACGAAAAGACCCCC 59.429 43.478 0.00 0.00 0.00 5.40
372 374 2.093500 AGCATCGAAGCCATAGTTGACA 60.093 45.455 9.36 0.00 34.23 3.58
375 377 3.610040 TCGAAGCCATAGTTGACACAT 57.390 42.857 0.00 0.00 0.00 3.21
395 397 6.209589 ACACATATATGAGCGACTGTAGGATT 59.790 38.462 19.63 0.00 0.00 3.01
451 453 8.630054 ATGGCTTAAAAGTGTTCTATGTGTTA 57.370 30.769 0.00 0.00 0.00 2.41
453 455 9.073475 TGGCTTAAAAGTGTTCTATGTGTTATT 57.927 29.630 0.00 0.00 0.00 1.40
454 456 9.908152 GGCTTAAAAGTGTTCTATGTGTTATTT 57.092 29.630 0.00 0.00 0.00 1.40
514 516 2.617774 GGTTACAACACCCGCTAAACAA 59.382 45.455 0.00 0.00 0.00 2.83
521 523 2.218603 CACCCGCTAAACAAAGACACT 58.781 47.619 0.00 0.00 0.00 3.55
523 525 3.432252 CACCCGCTAAACAAAGACACTAG 59.568 47.826 0.00 0.00 0.00 2.57
541 544 4.097218 GGAAACCAAGGGGCTCAC 57.903 61.111 0.00 0.00 37.90 3.51
550 553 0.178924 AAGGGGCTCACATTGGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
552 555 0.899717 GGGGCTCACATTGGCTTTCA 60.900 55.000 0.00 0.00 0.00 2.69
559 562 1.066002 CACATTGGCTTTCATAGGGCG 59.934 52.381 0.00 0.00 0.00 6.13
574 577 1.357334 GGCGGTGCTCAAACGAAAA 59.643 52.632 0.00 0.00 0.00 2.29
587 590 9.092876 TGCTCAAACGAAAATTTTGAAAACTAT 57.907 25.926 8.47 0.00 41.32 2.12
648 651 5.419155 TGGTTTCATGTGTTGTTTAGGACAA 59.581 36.000 0.00 0.00 45.70 3.18
854 868 1.037030 GCCCAGAAATGCGGATGGAA 61.037 55.000 0.00 0.00 34.60 3.53
855 869 1.696063 CCCAGAAATGCGGATGGAAT 58.304 50.000 0.00 0.00 34.60 3.01
952 966 1.381327 ACGGGTCTGACGGATGGAT 60.381 57.895 1.07 0.00 35.23 3.41
1435 1449 1.144716 CAGGCTGCCAGCGAATAGA 59.855 57.895 22.65 0.00 43.62 1.98
1617 1631 2.203070 GCGAGGTATGGGCAGGTG 60.203 66.667 0.00 0.00 0.00 4.00
1731 1745 2.030958 CAAACCGGTCGTAGGGCAC 61.031 63.158 8.04 0.00 0.00 5.01
1774 1788 1.272092 TGACCCTGAAGCTGGATTTGG 60.272 52.381 0.00 0.00 0.00 3.28
1775 1789 1.004745 GACCCTGAAGCTGGATTTGGA 59.995 52.381 0.00 0.00 0.00 3.53
1813 1827 2.418884 GGCCTCCTAGTTGAGTTGCTAC 60.419 54.545 0.00 0.00 0.00 3.58
1865 1879 5.353678 GGTTTCTCTCATTCAATCCTGTGAG 59.646 44.000 0.00 0.00 39.47 3.51
1926 1940 1.216710 GCTTGTGGACGAGGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
1952 1966 2.982643 TTGCCATGGATGAGCCGGT 61.983 57.895 18.40 0.00 40.66 5.28
2159 2173 2.500910 ACCTCAGCAGAGAAAGGATGAG 59.499 50.000 7.84 0.00 44.98 2.90
2192 2206 3.283751 CCAACACAAGTGGTAAAGGTCA 58.716 45.455 5.08 0.00 34.19 4.02
2207 2221 1.929494 AGGTCAGAGGATGAGGTCTCT 59.071 52.381 0.00 0.00 39.07 3.10
2208 2222 2.091885 AGGTCAGAGGATGAGGTCTCTC 60.092 54.545 0.00 0.00 39.07 3.20
2220 2234 2.765699 GAGGTCTCTCTCTCCTTTGCAT 59.234 50.000 0.00 0.00 37.07 3.96
2247 2261 5.564550 TCTTCTCAGAAATTTGGAAGGAGG 58.435 41.667 0.00 0.00 35.49 4.30
2249 2263 4.911390 TCTCAGAAATTTGGAAGGAGGTC 58.089 43.478 0.00 0.00 0.00 3.85
2259 2273 0.036858 GAAGGAGGTCTGGTGTGCTC 60.037 60.000 0.00 0.00 0.00 4.26
2311 2325 9.613428 TGGAATACAATGTAAATTCTACAGAGG 57.387 33.333 8.31 2.86 31.66 3.69
2317 2331 7.390718 ACAATGTAAATTCTACAGAGGTTGGTC 59.609 37.037 0.00 0.00 0.00 4.02
2374 2388 1.212935 AGGGATTTCCGGTCAGAATGG 59.787 52.381 0.00 0.00 41.52 3.16
2532 2546 3.791320 TCTCCATTCTGGTAGTCCTGTT 58.209 45.455 0.00 0.00 39.03 3.16
2775 2789 6.564709 TTGCCAGATATTTGCAGATCATAC 57.435 37.500 0.00 0.00 36.21 2.39
2853 2867 4.788100 GTGCTGTTAATGCATCAAGTTACG 59.212 41.667 0.00 0.00 42.69 3.18
2863 2877 1.886886 TCAAGTTACGGTTTGGGAGC 58.113 50.000 0.00 0.00 0.00 4.70
2883 2897 4.625963 AGCTAATTAGGGTCCTGTTCTCT 58.374 43.478 14.28 0.00 0.00 3.10
2982 2996 4.074970 GTTCTGTGAACATTGACCCTGAT 58.925 43.478 5.67 0.00 0.00 2.90
3156 3170 3.006110 CAGAAATTGCTGCTTCAAAGGGA 59.994 43.478 0.00 0.00 0.00 4.20
3408 3422 7.212274 TGTCACCAGATACATCACTTGATATG 58.788 38.462 0.00 0.00 32.63 1.78
3471 3485 7.213178 AGTTCCAAATCCTGTTCCTGTATAT 57.787 36.000 0.00 0.00 0.00 0.86
3489 3503 7.340743 CCTGTATATATCGATGAAGGACCTCTT 59.659 40.741 8.54 0.00 38.65 2.85
3495 3509 2.159170 CGATGAAGGACCTCTTGAGGAC 60.159 54.545 22.10 15.80 35.50 3.85
3813 3827 2.164338 GCCCCTTACATCCACGAAAAA 58.836 47.619 0.00 0.00 0.00 1.94
3933 3947 6.014156 GGATACATGAGGCTCTGGTTAGTAAT 60.014 42.308 16.72 3.91 0.00 1.89
4019 4111 5.799213 ACCTATATGCAGGCTCTTTATCAC 58.201 41.667 0.00 0.00 39.53 3.06
4201 4297 5.733620 TTCGATGTTACACTTTCCTACCT 57.266 39.130 0.00 0.00 0.00 3.08
4232 4328 4.853924 ATGCAGTTAAGTCCACCAAAAG 57.146 40.909 0.00 0.00 0.00 2.27
4237 4333 5.316987 CAGTTAAGTCCACCAAAAGATCCT 58.683 41.667 0.00 0.00 0.00 3.24
4471 4568 8.798859 TCTTTCTATTGAGATGAAAAAGGAGG 57.201 34.615 0.00 0.00 30.67 4.30
4472 4569 7.831193 TCTTTCTATTGAGATGAAAAAGGAGGG 59.169 37.037 0.00 0.00 30.67 4.30
4473 4570 6.006275 TCTATTGAGATGAAAAAGGAGGGG 57.994 41.667 0.00 0.00 0.00 4.79
4545 4642 6.356186 ACCGTTAACTAGAATTCTCTTGGT 57.644 37.500 12.24 8.65 32.70 3.67
4604 4701 8.579850 TGTGAATTTCAGTGCTATTTTCCTAT 57.420 30.769 0.00 0.00 0.00 2.57
4732 4829 5.538053 TGGTTCAGCCAAACATCAAGAAATA 59.462 36.000 1.72 0.00 45.94 1.40
4735 4832 7.276438 GGTTCAGCCAAACATCAAGAAATATTC 59.724 37.037 1.72 0.00 37.17 1.75
4896 5000 7.541122 TTTTTACCGTTCAAAAATTTCCTGG 57.459 32.000 0.00 0.00 31.65 4.45
4927 5031 7.647907 TCCGAGTTGACATAACTTTACTTTC 57.352 36.000 0.00 0.00 0.00 2.62
5054 5158 6.929606 GCAAGGTAAGATAGTATCCGTTGATT 59.070 38.462 17.33 5.40 32.18 2.57
5056 5160 9.976511 CAAGGTAAGATAGTATCCGTTGATTTA 57.023 33.333 6.53 0.00 32.18 1.40
5189 5294 4.671377 TGATTTGCAGTGTTCACAAGTTC 58.329 39.130 5.74 0.00 0.00 3.01
5238 5349 7.269477 AGAGCTATTAATTTGCACCTGAATC 57.731 36.000 13.25 3.46 0.00 2.52
5240 5351 7.340232 AGAGCTATTAATTTGCACCTGAATCAA 59.660 33.333 13.25 0.00 0.00 2.57
5256 5367 8.995577 ACCTGAATCAAATAATCCATTCCAAAT 58.004 29.630 0.00 0.00 0.00 2.32
5273 5384 7.907214 TTCCAAATCTAAGCTTCTTAGTCAC 57.093 36.000 0.00 0.00 0.00 3.67
5274 5385 7.004555 TCCAAATCTAAGCTTCTTAGTCACA 57.995 36.000 0.00 0.00 0.00 3.58
5275 5386 7.099764 TCCAAATCTAAGCTTCTTAGTCACAG 58.900 38.462 0.00 0.00 0.00 3.66
5276 5387 6.876257 CCAAATCTAAGCTTCTTAGTCACAGT 59.124 38.462 0.00 0.00 0.00 3.55
5277 5388 7.148507 CCAAATCTAAGCTTCTTAGTCACAGTG 60.149 40.741 0.00 0.00 0.00 3.66
5278 5389 5.392767 TCTAAGCTTCTTAGTCACAGTGG 57.607 43.478 0.00 0.00 0.00 4.00
5279 5390 5.077564 TCTAAGCTTCTTAGTCACAGTGGA 58.922 41.667 0.00 0.00 0.00 4.02
5280 5391 4.689612 AAGCTTCTTAGTCACAGTGGAA 57.310 40.909 0.00 0.00 0.00 3.53
5281 5392 4.689612 AGCTTCTTAGTCACAGTGGAAA 57.310 40.909 0.00 0.00 0.00 3.13
5282 5393 5.234466 AGCTTCTTAGTCACAGTGGAAAT 57.766 39.130 0.00 0.00 0.00 2.17
5283 5394 5.241662 AGCTTCTTAGTCACAGTGGAAATC 58.758 41.667 0.00 0.00 0.00 2.17
5284 5395 4.997395 GCTTCTTAGTCACAGTGGAAATCA 59.003 41.667 0.00 0.00 0.00 2.57
5285 5396 5.645497 GCTTCTTAGTCACAGTGGAAATCAT 59.355 40.000 0.00 0.00 0.00 2.45
5286 5397 6.402983 GCTTCTTAGTCACAGTGGAAATCATG 60.403 42.308 0.00 0.00 0.00 3.07
5287 5398 5.491070 TCTTAGTCACAGTGGAAATCATGG 58.509 41.667 0.00 0.00 0.00 3.66
5288 5399 3.795688 AGTCACAGTGGAAATCATGGT 57.204 42.857 0.00 0.00 0.00 3.55
5289 5400 3.679389 AGTCACAGTGGAAATCATGGTC 58.321 45.455 0.00 0.00 0.00 4.02
5290 5401 2.416547 GTCACAGTGGAAATCATGGTCG 59.583 50.000 0.00 0.00 0.00 4.79
5298 5409 4.332819 GTGGAAATCATGGTCGTTCCTTAG 59.667 45.833 10.18 0.00 40.24 2.18
5324 5435 4.985538 ACTTGGCTGATTCTTTAAGTCCA 58.014 39.130 0.00 0.00 0.00 4.02
5331 5442 5.106515 GCTGATTCTTTAAGTCCACCAAGAC 60.107 44.000 0.00 0.00 37.01 3.01
5332 5443 5.935945 TGATTCTTTAAGTCCACCAAGACA 58.064 37.500 0.00 0.00 39.34 3.41
5333 5444 6.542821 TGATTCTTTAAGTCCACCAAGACAT 58.457 36.000 0.00 0.00 39.34 3.06
5334 5445 7.685481 TGATTCTTTAAGTCCACCAAGACATA 58.315 34.615 0.00 0.00 39.34 2.29
5335 5446 7.606456 TGATTCTTTAAGTCCACCAAGACATAC 59.394 37.037 0.00 0.00 39.34 2.39
5336 5447 6.681729 TCTTTAAGTCCACCAAGACATACT 57.318 37.500 0.00 0.00 39.34 2.12
5337 5448 6.464222 TCTTTAAGTCCACCAAGACATACTG 58.536 40.000 0.00 0.00 39.34 2.74
5338 5449 3.703001 AAGTCCACCAAGACATACTGG 57.297 47.619 0.00 0.00 39.34 4.00
5339 5450 1.279271 AGTCCACCAAGACATACTGGC 59.721 52.381 0.00 0.00 39.34 4.85
5344 5455 3.129287 CCACCAAGACATACTGGCATTTC 59.871 47.826 0.00 0.00 0.00 2.17
5354 5465 9.905713 AGACATACTGGCATTTCTTATTTCTTA 57.094 29.630 0.00 0.00 0.00 2.10
5384 5495 1.626321 TGTTCAGGCCCGTTCTCATTA 59.374 47.619 0.00 0.00 0.00 1.90
5450 5561 2.126467 CTCTGCGAGCTTCTAATGAGC 58.874 52.381 0.00 0.00 0.00 4.26
5519 5630 2.360350 ATGCTCAACGCCCCTGTG 60.360 61.111 0.00 0.00 38.05 3.66
5579 5690 4.989168 GTCTCTGTTTTCACCGACATACTT 59.011 41.667 0.00 0.00 0.00 2.24
5594 5705 2.107950 TACTTTGCGGGGACTCATTG 57.892 50.000 0.00 0.00 0.00 2.82
5597 5708 2.224670 ACTTTGCGGGGACTCATTGTAA 60.225 45.455 0.00 0.00 0.00 2.41
5599 5710 0.251916 TGCGGGGACTCATTGTAAGG 59.748 55.000 0.00 0.00 0.00 2.69
5600 5711 0.252197 GCGGGGACTCATTGTAAGGT 59.748 55.000 0.00 0.00 0.00 3.50
5611 5731 8.358895 GGACTCATTGTAAGGTATAGTTCCTAC 58.641 40.741 0.00 0.00 34.56 3.18
5623 5743 5.667539 ATAGTTCCTACGGATGATCCATG 57.332 43.478 12.67 0.00 35.91 3.66
5624 5744 2.634940 AGTTCCTACGGATGATCCATGG 59.365 50.000 12.67 4.97 35.91 3.66
5626 5746 0.686789 CCTACGGATGATCCATGGCA 59.313 55.000 12.67 0.00 35.91 4.92
5628 5748 2.353323 CTACGGATGATCCATGGCATG 58.647 52.381 20.56 20.56 35.91 4.06
5636 5756 3.209318 CCATGGCATGGTTTCCGG 58.791 61.111 33.65 10.68 45.54 5.14
5641 5761 3.758931 GCATGGTTTCCGGGTGCC 61.759 66.667 0.00 1.40 0.00 5.01
5648 5768 3.835790 TTTCCGGGTGCCCAAGTCG 62.836 63.158 0.00 0.00 35.37 4.18
5665 5785 2.124695 GGCCGTGGAATCTGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
5667 5787 2.511600 CCGTGGAATCTGGGTCGC 60.512 66.667 0.00 0.00 0.00 5.19
5720 5840 4.664150 TGGAACAAGTCACAAAAATCCC 57.336 40.909 0.00 0.00 31.92 3.85
5721 5841 3.386402 TGGAACAAGTCACAAAAATCCCC 59.614 43.478 0.00 0.00 31.92 4.81
5722 5842 3.386402 GGAACAAGTCACAAAAATCCCCA 59.614 43.478 0.00 0.00 0.00 4.96
5723 5843 4.040339 GGAACAAGTCACAAAAATCCCCAT 59.960 41.667 0.00 0.00 0.00 4.00
5724 5844 4.605640 ACAAGTCACAAAAATCCCCATG 57.394 40.909 0.00 0.00 0.00 3.66
5725 5845 3.966665 ACAAGTCACAAAAATCCCCATGT 59.033 39.130 0.00 0.00 0.00 3.21
5726 5846 4.039124 ACAAGTCACAAAAATCCCCATGTC 59.961 41.667 0.00 0.00 0.00 3.06
5727 5847 4.118168 AGTCACAAAAATCCCCATGTCT 57.882 40.909 0.00 0.00 0.00 3.41
5728 5848 3.828451 AGTCACAAAAATCCCCATGTCTG 59.172 43.478 0.00 0.00 0.00 3.51
5729 5849 3.826157 GTCACAAAAATCCCCATGTCTGA 59.174 43.478 0.00 0.00 0.00 3.27
5730 5850 4.463891 GTCACAAAAATCCCCATGTCTGAT 59.536 41.667 0.00 0.00 0.00 2.90
5731 5851 4.463539 TCACAAAAATCCCCATGTCTGATG 59.536 41.667 0.00 0.00 0.00 3.07
5732 5852 4.463539 CACAAAAATCCCCATGTCTGATGA 59.536 41.667 0.00 0.00 0.00 2.92
5733 5853 5.128171 CACAAAAATCCCCATGTCTGATGAT 59.872 40.000 0.00 0.00 0.00 2.45
5734 5854 5.361857 ACAAAAATCCCCATGTCTGATGATC 59.638 40.000 0.00 0.00 0.00 2.92
5735 5855 4.801521 AAATCCCCATGTCTGATGATCA 57.198 40.909 0.00 0.00 0.00 2.92
5736 5856 4.368565 AATCCCCATGTCTGATGATCAG 57.631 45.455 16.15 16.15 45.59 2.90
5738 5858 1.073444 CCCCATGTCTGATGATCAGGG 59.927 57.143 21.27 14.90 44.39 4.45
5739 5859 1.073444 CCCATGTCTGATGATCAGGGG 59.927 57.143 21.27 18.72 44.39 4.79
5740 5860 2.052468 CCATGTCTGATGATCAGGGGA 58.948 52.381 21.27 6.96 44.39 4.81
5741 5861 2.440627 CCATGTCTGATGATCAGGGGAA 59.559 50.000 21.27 6.23 44.39 3.97
5742 5862 3.117776 CCATGTCTGATGATCAGGGGAAA 60.118 47.826 21.27 0.00 44.39 3.13
5743 5863 3.634397 TGTCTGATGATCAGGGGAAAC 57.366 47.619 21.27 12.44 44.39 2.78
5744 5864 2.093500 TGTCTGATGATCAGGGGAAACG 60.093 50.000 21.27 0.00 44.39 3.60
5745 5865 2.093447 GTCTGATGATCAGGGGAAACGT 60.093 50.000 21.27 0.00 44.39 3.99
5755 5875 0.675837 GGGGAAACGTAGAACCTGCC 60.676 60.000 0.00 0.00 0.00 4.85
5758 5878 2.433436 GGAAACGTAGAACCTGCCATT 58.567 47.619 0.00 0.00 0.00 3.16
5768 5888 2.872557 CTGCCATTGTCGGTGCAG 59.127 61.111 0.00 0.00 44.43 4.41
5770 5890 1.965930 TGCCATTGTCGGTGCAGAC 60.966 57.895 0.00 0.00 41.30 3.51
5780 5900 2.555547 GGTGCAGACAAGTGCCCAC 61.556 63.158 0.00 0.00 43.28 4.61
5782 5902 2.985847 GCAGACAAGTGCCCACCC 60.986 66.667 0.00 0.00 37.49 4.61
5783 5903 2.282462 CAGACAAGTGCCCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
5801 5921 4.041198 CACCCCTGTAAACTCCTGAAGTAA 59.959 45.833 0.00 0.00 37.17 2.24
5802 5922 4.041321 ACCCCTGTAAACTCCTGAAGTAAC 59.959 45.833 0.00 0.00 37.17 2.50
5804 5924 4.286291 CCCTGTAAACTCCTGAAGTAACCT 59.714 45.833 0.00 0.00 37.17 3.50
5824 5945 3.616821 CCTGACGATATTTTTCTGCACGA 59.383 43.478 0.00 0.00 0.00 4.35
5825 5946 4.092821 CCTGACGATATTTTTCTGCACGAA 59.907 41.667 0.00 0.00 0.00 3.85
5865 5988 2.672996 GTGCCGCACCCATTCAGT 60.673 61.111 12.80 0.00 0.00 3.41
5903 6026 4.584029 ATTGTTACGAAGAACAGCATCG 57.416 40.909 0.00 0.00 42.91 3.84
5910 6033 2.285256 CGAAGAACAGCATCGCATGTAC 60.285 50.000 0.00 0.00 30.53 2.90
5911 6034 2.680312 AGAACAGCATCGCATGTACT 57.320 45.000 0.00 0.00 0.00 2.73
5912 6035 2.544685 AGAACAGCATCGCATGTACTC 58.455 47.619 0.00 0.00 0.00 2.59
5913 6036 1.256376 GAACAGCATCGCATGTACTCG 59.744 52.381 0.00 0.00 0.00 4.18
5914 6037 0.173481 ACAGCATCGCATGTACTCGT 59.827 50.000 0.00 0.00 0.00 4.18
5915 6038 1.404035 ACAGCATCGCATGTACTCGTA 59.596 47.619 0.00 0.00 0.00 3.43
5918 6041 1.269102 GCATCGCATGTACTCGTAGGT 60.269 52.381 0.00 0.00 0.00 3.08
5922 6045 2.488937 TCGCATGTACTCGTAGGTTTGA 59.511 45.455 0.00 0.00 0.00 2.69
5929 6052 3.121738 ACTCGTAGGTTTGAAAGGTGG 57.878 47.619 0.00 0.00 0.00 4.61
5936 6059 3.490348 AGGTTTGAAAGGTGGATGTCAG 58.510 45.455 0.00 0.00 0.00 3.51
5952 6079 3.884895 TGTCAGTGTGTGGATTGAAAGT 58.115 40.909 0.00 0.00 0.00 2.66
5977 6104 8.587950 GTTCAAAGAGTTGTTGTAGATCTATCG 58.412 37.037 5.57 0.00 36.07 2.92
5978 6105 7.827701 TCAAAGAGTTGTTGTAGATCTATCGT 58.172 34.615 5.57 0.00 36.07 3.73
5979 6106 8.304596 TCAAAGAGTTGTTGTAGATCTATCGTT 58.695 33.333 5.57 0.00 36.07 3.85
5982 6109 6.153000 AGAGTTGTTGTAGATCTATCGTTGGT 59.847 38.462 5.57 0.00 0.00 3.67
5983 6110 7.338703 AGAGTTGTTGTAGATCTATCGTTGGTA 59.661 37.037 5.57 0.00 0.00 3.25
5984 6111 8.008513 AGTTGTTGTAGATCTATCGTTGGTAT 57.991 34.615 5.57 0.00 0.00 2.73
5985 6112 8.136165 AGTTGTTGTAGATCTATCGTTGGTATC 58.864 37.037 5.57 0.00 0.00 2.24
5989 6116 8.516234 GTTGTAGATCTATCGTTGGTATCATCT 58.484 37.037 5.57 0.00 0.00 2.90
5990 6117 8.045176 TGTAGATCTATCGTTGGTATCATCTG 57.955 38.462 5.57 0.00 0.00 2.90
5991 6118 6.522625 AGATCTATCGTTGGTATCATCTGG 57.477 41.667 0.00 0.00 0.00 3.86
5992 6119 6.013379 AGATCTATCGTTGGTATCATCTGGT 58.987 40.000 0.00 0.00 0.00 4.00
5993 6120 5.707242 TCTATCGTTGGTATCATCTGGTC 57.293 43.478 0.00 0.00 0.00 4.02
5994 6121 2.863401 TCGTTGGTATCATCTGGTCG 57.137 50.000 0.00 0.00 0.00 4.79
5995 6122 1.407618 TCGTTGGTATCATCTGGTCGG 59.592 52.381 0.00 0.00 0.00 4.79
5997 6124 1.128200 TTGGTATCATCTGGTCGGGG 58.872 55.000 0.00 0.00 0.00 5.73
5998 6125 1.371558 GGTATCATCTGGTCGGGGC 59.628 63.158 0.00 0.00 0.00 5.80
6000 6127 0.034059 GTATCATCTGGTCGGGGCTG 59.966 60.000 0.00 0.00 0.00 4.85
6002 6129 1.976132 ATCATCTGGTCGGGGCTGTG 61.976 60.000 0.00 0.00 0.00 3.66
6003 6130 4.101448 ATCTGGTCGGGGCTGTGC 62.101 66.667 0.00 0.00 0.00 4.57
6008 6135 3.845259 GTCGGGGCTGTGCGGATA 61.845 66.667 0.00 0.00 0.00 2.59
6010 6137 4.910585 CGGGGCTGTGCGGATACC 62.911 72.222 0.00 0.00 0.00 2.73
6033 6194 3.612479 GCTTTTTCGCAGAACCATGTGAT 60.612 43.478 0.00 0.00 45.90 3.06
6043 6206 2.485677 CCATGTGATGGCTGTGGTC 58.514 57.895 0.00 0.00 44.70 4.02
6047 6210 0.035317 TGTGATGGCTGTGGTCTGTC 59.965 55.000 0.00 0.00 0.00 3.51
6056 6219 3.256960 TGGTCTGTCCAAGGGGCC 61.257 66.667 0.00 0.00 44.12 5.80
6097 6260 2.513666 GGCGGGCGACATGAATGA 60.514 61.111 0.00 0.00 0.00 2.57
6100 6854 0.040958 GCGGGCGACATGAATGAATC 60.041 55.000 0.00 0.00 0.00 2.52
6107 6861 5.508489 GGGCGACATGAATGAATCAATCAAT 60.508 40.000 5.00 0.00 42.54 2.57
6108 6862 5.628193 GGCGACATGAATGAATCAATCAATC 59.372 40.000 5.00 5.65 42.54 2.67
6144 6900 3.334691 CTCACATGCCGGTTTCTTTCTA 58.665 45.455 1.90 0.00 0.00 2.10
6156 6912 5.276536 CGGTTTCTTTCTAGTTTTCGTTCGT 60.277 40.000 0.00 0.00 0.00 3.85
6343 7105 5.723492 TGACTCGAGAATTCGTCGTTATA 57.277 39.130 21.68 6.69 46.72 0.98
6379 7151 1.411493 GGATTTCGTCGTCGGTGCTC 61.411 60.000 1.55 0.00 37.69 4.26
6391 7163 2.202570 GTGCTCGCCGTCGTGTAT 60.203 61.111 0.00 0.00 36.96 2.29
6429 7232 7.147976 ACAACTGCAAGATAAACAAGATTTCC 58.852 34.615 0.00 0.00 37.43 3.13
6467 7270 5.022787 AGGAGCCTGGAAGATACATATCTC 58.977 45.833 0.00 0.00 41.96 2.75
6478 7281 1.888215 ACATATCTCCAGCGCCAATG 58.112 50.000 2.29 0.00 0.00 2.82
6529 7332 3.768922 GCTCTGGCTGGCGAGTCT 61.769 66.667 18.51 0.00 35.22 3.24
6530 7333 2.977178 CTCTGGCTGGCGAGTCTT 59.023 61.111 0.97 0.00 0.00 3.01
6531 7334 1.153667 CTCTGGCTGGCGAGTCTTC 60.154 63.158 0.97 0.00 0.00 2.87
6532 7335 2.125350 CTGGCTGGCGAGTCTTCC 60.125 66.667 0.97 0.00 0.00 3.46
6533 7336 3.672295 CTGGCTGGCGAGTCTTCCC 62.672 68.421 0.97 0.00 0.00 3.97
6534 7337 3.394836 GGCTGGCGAGTCTTCCCT 61.395 66.667 0.00 0.00 0.00 4.20
6535 7338 2.185608 GCTGGCGAGTCTTCCCTC 59.814 66.667 0.00 0.00 0.00 4.30
6536 7339 2.650116 GCTGGCGAGTCTTCCCTCA 61.650 63.158 0.00 0.00 0.00 3.86
6537 7340 1.975327 CTGGCGAGTCTTCCCTCAA 59.025 57.895 0.00 0.00 0.00 3.02
6538 7341 0.321671 CTGGCGAGTCTTCCCTCAAA 59.678 55.000 0.00 0.00 0.00 2.69
6539 7342 0.762418 TGGCGAGTCTTCCCTCAAAA 59.238 50.000 0.00 0.00 0.00 2.44
6540 7343 1.142060 TGGCGAGTCTTCCCTCAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
6564 7367 2.041153 AAAAAGGTTCTGGCTGGCG 58.959 52.632 0.00 0.00 0.00 5.69
6565 7368 0.467290 AAAAAGGTTCTGGCTGGCGA 60.467 50.000 0.00 0.00 0.00 5.54
6566 7369 0.890996 AAAAGGTTCTGGCTGGCGAG 60.891 55.000 0.00 0.00 0.00 5.03
6567 7370 2.056906 AAAGGTTCTGGCTGGCGAGT 62.057 55.000 0.00 0.00 0.00 4.18
6568 7371 2.435059 GGTTCTGGCTGGCGAGTC 60.435 66.667 0.00 0.00 0.00 3.36
6607 7411 2.563013 GATCCACCCAGCACCAGCAT 62.563 60.000 0.00 0.00 45.49 3.79
6701 7506 1.423845 GCGTGGCGGAAACATACAG 59.576 57.895 0.00 0.00 0.00 2.74
6739 7548 3.614630 GCACCCGGTAATAAACAAAACCC 60.615 47.826 0.00 0.00 0.00 4.11
6793 7602 1.152383 GCTTATCCGAACCGAGCACC 61.152 60.000 0.00 0.00 33.68 5.01
6794 7603 0.529992 CTTATCCGAACCGAGCACCC 60.530 60.000 0.00 0.00 0.00 4.61
6795 7604 1.259142 TTATCCGAACCGAGCACCCA 61.259 55.000 0.00 0.00 0.00 4.51
6796 7605 1.672854 TATCCGAACCGAGCACCCAG 61.673 60.000 0.00 0.00 0.00 4.45
6797 7606 3.691342 CCGAACCGAGCACCCAGA 61.691 66.667 0.00 0.00 0.00 3.86
6798 7607 2.432628 CGAACCGAGCACCCAGAC 60.433 66.667 0.00 0.00 0.00 3.51
6799 7608 2.047179 GAACCGAGCACCCAGACC 60.047 66.667 0.00 0.00 0.00 3.85
6800 7609 3.607370 GAACCGAGCACCCAGACCC 62.607 68.421 0.00 0.00 0.00 4.46
6803 7612 4.436998 CGAGCACCCAGACCCGTC 62.437 72.222 0.00 0.00 0.00 4.79
6804 7613 4.083862 GAGCACCCAGACCCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
6807 7616 3.706373 CACCCAGACCCGTCCCAG 61.706 72.222 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.066342 CGTCATTCACGGTGGTCTACTAT 59.934 47.826 8.50 0.00 45.46 2.12
1 2 2.421073 CGTCATTCACGGTGGTCTACTA 59.579 50.000 8.50 0.00 45.46 1.82
2 3 1.201647 CGTCATTCACGGTGGTCTACT 59.798 52.381 8.50 0.00 45.46 2.57
3 4 1.625616 CGTCATTCACGGTGGTCTAC 58.374 55.000 8.50 1.92 45.46 2.59
5 6 4.988065 CGTCATTCACGGTGGTCT 57.012 55.556 8.50 0.00 45.46 3.85
12 13 4.209288 GATTGGTAATCTCCGTCATTCACG 59.791 45.833 0.00 0.00 40.33 4.35
13 14 5.116180 TGATTGGTAATCTCCGTCATTCAC 58.884 41.667 3.53 0.00 38.72 3.18
14 15 5.351948 TGATTGGTAATCTCCGTCATTCA 57.648 39.130 3.53 0.00 38.72 2.57
15 16 5.334414 GCATGATTGGTAATCTCCGTCATTC 60.334 44.000 0.00 0.00 38.72 2.67
16 17 4.516698 GCATGATTGGTAATCTCCGTCATT 59.483 41.667 0.00 0.00 38.72 2.57
17 18 4.067896 GCATGATTGGTAATCTCCGTCAT 58.932 43.478 0.00 0.00 38.72 3.06
18 19 3.466836 GCATGATTGGTAATCTCCGTCA 58.533 45.455 0.00 0.00 38.72 4.35
19 20 2.808543 GGCATGATTGGTAATCTCCGTC 59.191 50.000 0.00 0.00 38.72 4.79
20 21 2.172505 TGGCATGATTGGTAATCTCCGT 59.827 45.455 0.00 0.00 38.72 4.69
21 22 2.849942 TGGCATGATTGGTAATCTCCG 58.150 47.619 0.00 0.00 38.72 4.63
22 23 3.005155 GCTTGGCATGATTGGTAATCTCC 59.995 47.826 4.32 3.28 38.72 3.71
23 24 3.633525 TGCTTGGCATGATTGGTAATCTC 59.366 43.478 4.32 0.00 34.55 2.75
24 25 3.382546 GTGCTTGGCATGATTGGTAATCT 59.617 43.478 4.32 0.00 41.91 2.40
25 26 3.382546 AGTGCTTGGCATGATTGGTAATC 59.617 43.478 4.32 0.00 41.91 1.75
26 27 3.368248 AGTGCTTGGCATGATTGGTAAT 58.632 40.909 4.32 0.00 41.91 1.89
27 28 2.806434 AGTGCTTGGCATGATTGGTAA 58.194 42.857 4.32 0.00 41.91 2.85
28 29 2.512692 AGTGCTTGGCATGATTGGTA 57.487 45.000 4.32 0.00 41.91 3.25
29 30 1.547372 GAAGTGCTTGGCATGATTGGT 59.453 47.619 4.32 0.00 41.91 3.67
30 31 1.468565 CGAAGTGCTTGGCATGATTGG 60.469 52.381 4.32 0.00 41.91 3.16
31 32 1.468565 CCGAAGTGCTTGGCATGATTG 60.469 52.381 4.32 0.00 41.91 2.67
32 33 0.813184 CCGAAGTGCTTGGCATGATT 59.187 50.000 4.32 0.00 41.91 2.57
33 34 0.322816 ACCGAAGTGCTTGGCATGAT 60.323 50.000 4.32 0.00 41.91 2.45
34 35 1.073025 ACCGAAGTGCTTGGCATGA 59.927 52.632 4.32 0.00 41.91 3.07
35 36 1.210931 CACCGAAGTGCTTGGCATG 59.789 57.895 0.00 0.00 41.91 4.06
36 37 0.957395 CTCACCGAAGTGCTTGGCAT 60.957 55.000 0.00 0.00 44.16 4.40
37 38 1.597854 CTCACCGAAGTGCTTGGCA 60.598 57.895 0.00 0.00 44.16 4.92
38 39 2.328099 CCTCACCGAAGTGCTTGGC 61.328 63.158 0.00 0.00 44.16 4.52
39 40 1.672356 CCCTCACCGAAGTGCTTGG 60.672 63.158 0.00 0.00 44.16 3.61
40 41 2.328099 GCCCTCACCGAAGTGCTTG 61.328 63.158 0.00 0.00 44.16 4.01
41 42 2.032681 GCCCTCACCGAAGTGCTT 59.967 61.111 0.00 0.00 44.16 3.91
42 43 2.527951 GATGCCCTCACCGAAGTGCT 62.528 60.000 0.00 0.00 44.16 4.40
43 44 2.045926 ATGCCCTCACCGAAGTGC 60.046 61.111 0.00 0.00 44.16 4.40
44 45 1.811266 CGATGCCCTCACCGAAGTG 60.811 63.158 0.00 0.00 46.00 3.16
45 46 2.579201 CGATGCCCTCACCGAAGT 59.421 61.111 0.00 0.00 28.14 3.01
46 47 2.892425 GCGATGCCCTCACCGAAG 60.892 66.667 0.00 0.00 28.14 3.79
47 48 4.467084 GGCGATGCCCTCACCGAA 62.467 66.667 0.00 0.00 44.06 4.30
57 58 4.921834 GCCTAGATAGGGCGATGC 57.078 61.111 7.99 0.00 43.82 3.91
63 64 3.904339 AGTGGTTATGTGCCTAGATAGGG 59.096 47.826 7.99 0.00 43.82 3.53
66 67 5.477291 GCTAGAGTGGTTATGTGCCTAGATA 59.523 44.000 0.00 0.00 0.00 1.98
70 71 3.371034 TGCTAGAGTGGTTATGTGCCTA 58.629 45.455 0.00 0.00 0.00 3.93
104 105 1.003233 CTGTCAAGTAAGGTCACCCCC 59.997 57.143 0.00 0.00 0.00 5.40
109 110 2.257207 CCCTCCTGTCAAGTAAGGTCA 58.743 52.381 0.00 0.00 34.94 4.02
116 117 0.763223 AACGACCCCTCCTGTCAAGT 60.763 55.000 0.00 0.00 32.91 3.16
119 120 1.553248 CATTAACGACCCCTCCTGTCA 59.447 52.381 0.00 0.00 32.91 3.58
122 123 2.420129 CCTTCATTAACGACCCCTCCTG 60.420 54.545 0.00 0.00 0.00 3.86
133 134 0.099436 CAGCGGCAGCCTTCATTAAC 59.901 55.000 10.54 0.00 46.67 2.01
143 144 1.303799 CCATGGATATCAGCGGCAGC 61.304 60.000 5.56 0.00 45.58 5.25
145 146 0.322648 CTCCATGGATATCAGCGGCA 59.677 55.000 16.63 0.00 0.00 5.69
149 150 1.818642 GTGGCTCCATGGATATCAGC 58.181 55.000 16.63 14.63 0.00 4.26
150 151 1.345741 ACGTGGCTCCATGGATATCAG 59.654 52.381 16.63 9.80 37.27 2.90
151 152 1.344438 GACGTGGCTCCATGGATATCA 59.656 52.381 16.63 11.06 37.27 2.15
156 157 3.770040 CCGACGTGGCTCCATGGA 61.770 66.667 15.27 15.27 37.27 3.41
188 189 1.452110 TCATGGTGTCGATTGGCTTG 58.548 50.000 0.00 0.00 0.00 4.01
189 190 2.019249 CATCATGGTGTCGATTGGCTT 58.981 47.619 0.00 0.00 0.00 4.35
191 192 1.600957 CTCATCATGGTGTCGATTGGC 59.399 52.381 5.73 0.00 0.00 4.52
192 193 3.183793 TCTCATCATGGTGTCGATTGG 57.816 47.619 5.73 0.00 0.00 3.16
199 200 5.423290 TCACACTCTAATCTCATCATGGTGT 59.577 40.000 5.73 0.00 36.09 4.16
219 220 4.694037 TCGTCTCGAATAGAAGTTCTCACA 59.306 41.667 9.12 0.00 35.47 3.58
305 306 1.032014 CTCTTGTTTGTGTGTGGGGG 58.968 55.000 0.00 0.00 0.00 5.40
310 311 4.422073 TCCTCATCTCTTGTTTGTGTGT 57.578 40.909 0.00 0.00 0.00 3.72
311 312 4.394300 GGATCCTCATCTCTTGTTTGTGTG 59.606 45.833 3.84 0.00 0.00 3.82
372 374 6.842437 AATCCTACAGTCGCTCATATATGT 57.158 37.500 12.42 0.00 0.00 2.29
375 377 5.773176 TCCAAATCCTACAGTCGCTCATATA 59.227 40.000 0.00 0.00 0.00 0.86
500 502 1.944709 GTGTCTTTGTTTAGCGGGTGT 59.055 47.619 0.00 0.00 0.00 4.16
503 505 3.000727 CCTAGTGTCTTTGTTTAGCGGG 58.999 50.000 0.00 0.00 0.00 6.13
514 516 2.375509 CCCTTGGTTTCCCTAGTGTCTT 59.624 50.000 0.00 0.00 32.33 3.01
521 523 0.476808 TGAGCCCCTTGGTTTCCCTA 60.477 55.000 0.00 0.00 0.00 3.53
523 525 1.606601 GTGAGCCCCTTGGTTTCCC 60.607 63.158 0.00 0.00 0.00 3.97
531 534 0.178924 AAAGCCAATGTGAGCCCCTT 60.179 50.000 0.00 0.00 0.00 3.95
541 544 0.670162 CCGCCCTATGAAAGCCAATG 59.330 55.000 0.00 0.00 0.00 2.82
550 553 0.392461 GTTTGAGCACCGCCCTATGA 60.392 55.000 0.00 0.00 0.00 2.15
552 555 1.449601 CGTTTGAGCACCGCCCTAT 60.450 57.895 0.00 0.00 0.00 2.57
559 562 5.710613 TTCAAAATTTTCGTTTGAGCACC 57.289 34.783 0.00 0.00 43.76 5.01
624 627 4.950475 TGTCCTAAACAACACATGAAACCA 59.050 37.500 0.00 0.00 34.03 3.67
817 829 5.545723 TCTGGGCCCATTTAATTCTCAAAAA 59.454 36.000 28.82 0.00 0.00 1.94
818 830 5.090139 TCTGGGCCCATTTAATTCTCAAAA 58.910 37.500 28.82 0.00 0.00 2.44
819 831 4.682563 TCTGGGCCCATTTAATTCTCAAA 58.317 39.130 28.82 0.00 0.00 2.69
820 832 4.329638 TCTGGGCCCATTTAATTCTCAA 57.670 40.909 28.82 0.00 0.00 3.02
823 835 4.141642 GCATTTCTGGGCCCATTTAATTCT 60.142 41.667 28.82 1.68 0.00 2.40
824 836 4.129380 GCATTTCTGGGCCCATTTAATTC 58.871 43.478 28.82 15.23 0.00 2.17
877 891 2.759985 GGTCCAGAACCAGGTCTGA 58.240 57.895 14.33 0.00 46.76 3.27
885 899 1.095807 GGCTATTGCGGTCCAGAACC 61.096 60.000 0.00 0.00 45.45 3.62
1348 1362 1.434696 CGCTTTGCCCTATTGCTGG 59.565 57.895 0.00 0.00 0.00 4.85
1349 1363 1.226773 GCGCTTTGCCCTATTGCTG 60.227 57.895 0.00 0.00 37.76 4.41
1350 1364 2.764314 CGCGCTTTGCCCTATTGCT 61.764 57.895 5.56 0.00 42.08 3.91
1534 1548 3.068691 CGCCTCCCTCTCGACCAA 61.069 66.667 0.00 0.00 0.00 3.67
1601 1615 0.179073 CTTCACCTGCCCATACCTCG 60.179 60.000 0.00 0.00 0.00 4.63
1617 1631 1.294659 CGGTGCTGCCAGAGAACTTC 61.295 60.000 0.00 0.00 36.97 3.01
1731 1745 0.379669 CTGCAGCTTTATTGAGGCCG 59.620 55.000 0.00 0.00 0.00 6.13
1865 1879 2.036862 ACCTCGAACTTCCAGTTACCAC 59.963 50.000 0.00 0.00 38.80 4.16
1959 1973 2.486966 GCTTCAGCAATCGGTGGC 59.513 61.111 0.00 0.00 41.13 5.01
2094 2108 1.472878 TCCTCCATGTCTTCGTCTTCG 59.527 52.381 0.00 0.00 38.55 3.79
2132 2146 0.319728 TTCTCTGCTGAGGTGTCTGC 59.680 55.000 19.23 0.00 45.47 4.26
2159 2173 1.686355 TGTGTTGGGTGAATCCACAC 58.314 50.000 7.82 7.82 46.71 3.82
2192 2206 2.443255 GGAGAGAGAGACCTCATCCTCT 59.557 54.545 12.81 12.81 41.06 3.69
2207 2221 3.328931 AGAAGAACCATGCAAAGGAGAGA 59.671 43.478 14.81 0.00 0.00 3.10
2208 2222 3.683802 AGAAGAACCATGCAAAGGAGAG 58.316 45.455 14.81 0.00 0.00 3.20
2220 2234 5.536161 CCTTCCAAATTTCTGAGAAGAACCA 59.464 40.000 14.11 0.00 36.83 3.67
2247 2261 2.320587 CCTTGCGAGCACACCAGAC 61.321 63.158 0.00 0.00 0.00 3.51
2249 2263 1.165907 TTTCCTTGCGAGCACACCAG 61.166 55.000 0.00 0.00 0.00 4.00
2259 2273 1.666888 GCATGTGGTTCTTTCCTTGCG 60.667 52.381 0.00 0.00 0.00 4.85
2311 2325 3.356529 ACCATGAGAAGATGGACCAAC 57.643 47.619 0.00 0.00 45.24 3.77
2367 2381 2.648059 CCTTCTACCTTGGCCATTCTG 58.352 52.381 6.09 0.00 0.00 3.02
2374 2388 2.200373 TTGAAGCCTTCTACCTTGGC 57.800 50.000 5.96 0.00 46.42 4.52
2532 2546 3.130734 AGGCCAGTTCCAGGAGTATTA 57.869 47.619 5.01 0.00 0.00 0.98
2775 2789 4.454847 AGCTGCCTTTCGATGATATCAATG 59.545 41.667 9.99 5.38 0.00 2.82
2853 2867 3.552875 GACCCTAATTAGCTCCCAAACC 58.447 50.000 6.99 0.00 0.00 3.27
2863 2877 5.894393 TCTCAGAGAACAGGACCCTAATTAG 59.106 44.000 5.43 5.43 0.00 1.73
2883 2897 0.322975 GGTTGCCAGCTTCTCTCTCA 59.677 55.000 0.00 0.00 0.00 3.27
2982 2996 2.708861 TCTCCTAACCAAAGGAAGTGCA 59.291 45.455 0.00 0.00 45.08 4.57
3156 3170 1.078848 GACTGCCAAGCGGACATCT 60.079 57.895 1.69 0.00 38.46 2.90
3319 3333 2.778299 TGGTGAATCAAGTAAAGCGCT 58.222 42.857 2.64 2.64 0.00 5.92
3438 3452 1.202348 GGATTTGGAACTTTGCCCTCG 59.798 52.381 0.00 0.00 0.00 4.63
3471 3485 3.891977 CCTCAAGAGGTCCTTCATCGATA 59.108 47.826 7.98 0.00 43.61 2.92
3489 3503 1.367471 CCACTGAAGTGCGTCCTCA 59.633 57.895 4.87 0.00 44.34 3.86
3813 3827 6.071391 ACTGCGACAAAATTTCCCTGATTAAT 60.071 34.615 0.00 0.00 0.00 1.40
3971 3985 9.726438 GTATTGTCAGCAGGAGGTTATAATATT 57.274 33.333 0.00 0.00 0.00 1.28
3973 3987 7.512746 AGGTATTGTCAGCAGGAGGTTATAATA 59.487 37.037 0.00 0.00 0.00 0.98
3974 3988 6.330250 AGGTATTGTCAGCAGGAGGTTATAAT 59.670 38.462 0.00 0.00 0.00 1.28
3975 3989 5.665812 AGGTATTGTCAGCAGGAGGTTATAA 59.334 40.000 0.00 0.00 0.00 0.98
3977 3991 4.040755 AGGTATTGTCAGCAGGAGGTTAT 58.959 43.478 0.00 0.00 0.00 1.89
3979 3993 2.269940 AGGTATTGTCAGCAGGAGGTT 58.730 47.619 0.00 0.00 0.00 3.50
3980 3994 1.958288 AGGTATTGTCAGCAGGAGGT 58.042 50.000 0.00 0.00 0.00 3.85
3981 3995 5.728471 CATATAGGTATTGTCAGCAGGAGG 58.272 45.833 0.00 0.00 0.00 4.30
3984 3998 4.898320 TGCATATAGGTATTGTCAGCAGG 58.102 43.478 0.00 0.00 0.00 4.85
3985 3999 4.934001 CCTGCATATAGGTATTGTCAGCAG 59.066 45.833 0.00 0.00 44.65 4.24
3986 4000 4.803924 GCCTGCATATAGGTATTGTCAGCA 60.804 45.833 0.00 0.00 40.11 4.41
4019 4111 5.048643 ACCTTGTCGATCTCCATAGTATTCG 60.049 44.000 0.00 0.00 0.00 3.34
4188 4284 9.338622 GCATAATTATGTAAGGTAGGAAAGTGT 57.661 33.333 23.14 0.00 36.11 3.55
4201 4297 9.116067 GGTGGACTTAACTGCATAATTATGTAA 57.884 33.333 23.14 13.97 36.11 2.41
4209 4305 6.065374 TCTTTTGGTGGACTTAACTGCATAA 58.935 36.000 0.00 0.00 0.00 1.90
4281 4377 5.069251 TCAAAATAAACGAAGGGGCTTTTCA 59.931 36.000 0.00 0.00 0.00 2.69
4471 4568 7.229506 CCTGTGACTAGAAATCCATATTTTCCC 59.770 40.741 0.00 0.00 35.41 3.97
4472 4569 7.255277 GCCTGTGACTAGAAATCCATATTTTCC 60.255 40.741 0.00 0.00 35.41 3.13
4473 4570 7.283127 TGCCTGTGACTAGAAATCCATATTTTC 59.717 37.037 0.00 0.00 35.41 2.29
4545 4642 8.602424 TCATTTCATTAGGTTCTGGAGAAGTAA 58.398 33.333 0.00 0.00 34.27 2.24
4732 4829 4.759693 TCCAAAGCACTTGTAATGTCGAAT 59.240 37.500 0.00 0.00 32.65 3.34
4735 4832 3.745975 TCTCCAAAGCACTTGTAATGTCG 59.254 43.478 0.00 0.00 32.65 4.35
4915 5019 7.236847 TGGATCCTGGAAGAGAAAGTAAAGTTA 59.763 37.037 14.23 0.00 34.07 2.24
4927 5031 3.102972 TCTCAAGTGGATCCTGGAAGAG 58.897 50.000 14.23 13.18 34.07 2.85
5059 5163 9.982651 GGTTAGTTGCAGATTGTAGATCTATTA 57.017 33.333 5.57 0.00 0.00 0.98
5068 5172 7.826744 TCAACATATGGTTAGTTGCAGATTGTA 59.173 33.333 7.80 0.00 41.67 2.41
5070 5174 7.087409 TCAACATATGGTTAGTTGCAGATTG 57.913 36.000 7.80 0.00 41.67 2.67
5073 5177 6.179756 ACATCAACATATGGTTAGTTGCAGA 58.820 36.000 7.80 0.00 41.67 4.26
5210 5315 6.038356 CAGGTGCAAATTAATAGCTCTTTGG 58.962 40.000 12.38 0.80 0.00 3.28
5240 5351 9.652114 AGAAGCTTAGATTTGGAATGGATTATT 57.348 29.630 0.00 0.00 0.00 1.40
5256 5367 5.077564 TCCACTGTGACTAAGAAGCTTAGA 58.922 41.667 18.20 0.00 0.00 2.10
5268 5379 3.679389 GACCATGATTTCCACTGTGACT 58.321 45.455 9.86 0.00 0.00 3.41
5273 5384 2.420022 GGAACGACCATGATTTCCACTG 59.580 50.000 0.00 0.00 37.94 3.66
5274 5385 2.305927 AGGAACGACCATGATTTCCACT 59.694 45.455 13.67 0.00 40.13 4.00
5275 5386 2.711542 AGGAACGACCATGATTTCCAC 58.288 47.619 13.67 0.00 40.13 4.02
5276 5387 3.433306 AAGGAACGACCATGATTTCCA 57.567 42.857 13.67 0.00 40.13 3.53
5277 5388 4.571176 GTCTAAGGAACGACCATGATTTCC 59.429 45.833 0.00 0.35 42.04 3.13
5278 5389 4.267928 CGTCTAAGGAACGACCATGATTTC 59.732 45.833 0.00 0.00 42.04 2.17
5279 5390 4.081862 TCGTCTAAGGAACGACCATGATTT 60.082 41.667 0.00 0.00 42.04 2.17
5280 5391 3.446161 TCGTCTAAGGAACGACCATGATT 59.554 43.478 0.00 0.00 42.04 2.57
5281 5392 3.021695 TCGTCTAAGGAACGACCATGAT 58.978 45.455 0.00 0.00 42.04 2.45
5282 5393 2.439409 TCGTCTAAGGAACGACCATGA 58.561 47.619 0.00 0.00 42.04 3.07
5283 5394 2.933495 TCGTCTAAGGAACGACCATG 57.067 50.000 0.00 0.00 42.04 3.66
5288 5399 1.068055 GCCAAGTCGTCTAAGGAACGA 60.068 52.381 5.48 0.00 0.00 3.85
5289 5400 1.067776 AGCCAAGTCGTCTAAGGAACG 60.068 52.381 5.48 0.00 0.00 3.95
5290 5401 2.029290 TCAGCCAAGTCGTCTAAGGAAC 60.029 50.000 5.48 0.00 0.00 3.62
5298 5409 4.691216 ACTTAAAGAATCAGCCAAGTCGTC 59.309 41.667 0.00 0.00 0.00 4.20
5324 5435 4.307032 AGAAATGCCAGTATGTCTTGGT 57.693 40.909 0.00 0.00 0.00 3.67
5360 5471 1.200020 GAGAACGGGCCTGAACATTTG 59.800 52.381 21.41 0.00 0.00 2.32
5384 5495 1.967319 CCCTGCCGCAGTTACATAAT 58.033 50.000 18.98 0.00 0.00 1.28
5524 5635 2.642254 TAGGACGCCCTGTTGTCGG 61.642 63.158 0.00 0.00 44.15 4.79
5525 5636 1.445582 GTAGGACGCCCTGTTGTCG 60.446 63.158 0.00 0.00 44.15 4.35
5529 5640 3.388841 CAGGTAGGACGCCCTGTT 58.611 61.111 0.00 0.00 44.15 3.16
5555 5666 3.753294 ATGTCGGTGAAAACAGAGACT 57.247 42.857 0.00 0.00 0.00 3.24
5579 5690 1.339631 CCTTACAATGAGTCCCCGCAA 60.340 52.381 0.00 0.00 0.00 4.85
5623 5743 3.758931 GCACCCGGAAACCATGCC 61.759 66.667 0.73 0.00 0.00 4.40
5624 5744 3.758931 GGCACCCGGAAACCATGC 61.759 66.667 0.73 2.42 35.51 4.06
5641 5761 2.046314 ATTCCACGGCCGACTTGG 60.046 61.111 35.90 28.85 42.50 3.61
5648 5768 2.124695 GACCCAGATTCCACGGCC 60.125 66.667 0.00 0.00 0.00 6.13
5650 5770 2.511600 GCGACCCAGATTCCACGG 60.512 66.667 0.00 0.00 0.00 4.94
5652 5772 3.195698 GCGCGACCCAGATTCCAC 61.196 66.667 12.10 0.00 0.00 4.02
5653 5773 3.247056 TTGCGCGACCCAGATTCCA 62.247 57.895 12.10 0.00 0.00 3.53
5665 5785 1.059994 GATTCACAGCTCTTGCGCG 59.940 57.895 0.00 0.00 45.42 6.86
5667 5787 0.096628 GCAGATTCACAGCTCTTGCG 59.903 55.000 0.00 0.00 45.42 4.85
5697 5817 4.990426 GGGATTTTTGTGACTTGTTCCATG 59.010 41.667 0.00 0.00 0.00 3.66
5726 5846 2.698855 ACGTTTCCCCTGATCATCAG 57.301 50.000 7.79 7.79 43.91 2.90
5727 5847 3.371034 TCTACGTTTCCCCTGATCATCA 58.629 45.455 0.00 0.00 0.00 3.07
5728 5848 4.120589 GTTCTACGTTTCCCCTGATCATC 58.879 47.826 0.00 0.00 0.00 2.92
5729 5849 3.118371 GGTTCTACGTTTCCCCTGATCAT 60.118 47.826 0.00 0.00 0.00 2.45
5730 5850 2.235402 GGTTCTACGTTTCCCCTGATCA 59.765 50.000 0.00 0.00 0.00 2.92
5731 5851 2.500504 AGGTTCTACGTTTCCCCTGATC 59.499 50.000 0.00 0.00 0.00 2.92
5732 5852 2.236395 CAGGTTCTACGTTTCCCCTGAT 59.764 50.000 15.13 0.00 41.57 2.90
5733 5853 1.621814 CAGGTTCTACGTTTCCCCTGA 59.378 52.381 15.13 0.00 41.57 3.86
5734 5854 1.944430 GCAGGTTCTACGTTTCCCCTG 60.944 57.143 15.65 15.65 41.87 4.45
5735 5855 0.323957 GCAGGTTCTACGTTTCCCCT 59.676 55.000 0.00 0.00 0.00 4.79
5736 5856 0.675837 GGCAGGTTCTACGTTTCCCC 60.676 60.000 0.00 0.00 0.00 4.81
5738 5858 2.109425 ATGGCAGGTTCTACGTTTCC 57.891 50.000 0.00 0.00 0.00 3.13
5739 5859 2.812011 ACAATGGCAGGTTCTACGTTTC 59.188 45.455 0.00 0.00 0.00 2.78
5740 5860 2.812011 GACAATGGCAGGTTCTACGTTT 59.188 45.455 0.00 0.00 0.00 3.60
5741 5861 2.423577 GACAATGGCAGGTTCTACGTT 58.576 47.619 0.00 0.00 0.00 3.99
5742 5862 1.671850 CGACAATGGCAGGTTCTACGT 60.672 52.381 0.00 0.00 0.00 3.57
5743 5863 0.999406 CGACAATGGCAGGTTCTACG 59.001 55.000 0.00 0.00 0.00 3.51
5744 5864 1.338769 ACCGACAATGGCAGGTTCTAC 60.339 52.381 0.00 0.00 32.17 2.59
5745 5865 0.981183 ACCGACAATGGCAGGTTCTA 59.019 50.000 0.00 0.00 32.17 2.10
5758 5878 1.887242 GCACTTGTCTGCACCGACA 60.887 57.895 4.76 4.76 41.82 4.35
5768 5888 1.774894 TACAGGGGTGGGCACTTGTC 61.775 60.000 0.00 0.00 0.00 3.18
5770 5890 0.178975 TTTACAGGGGTGGGCACTTG 60.179 55.000 0.00 0.00 0.00 3.16
5780 5900 4.565028 GGTTACTTCAGGAGTTTACAGGGG 60.565 50.000 0.00 0.00 39.86 4.79
5782 5902 5.011738 TCAGGTTACTTCAGGAGTTTACAGG 59.988 44.000 0.00 0.00 39.86 4.00
5783 5903 5.927115 GTCAGGTTACTTCAGGAGTTTACAG 59.073 44.000 0.00 0.00 39.86 2.74
5801 5921 3.370978 CGTGCAGAAAAATATCGTCAGGT 59.629 43.478 0.00 0.00 0.00 4.00
5802 5922 3.616821 TCGTGCAGAAAAATATCGTCAGG 59.383 43.478 0.00 0.00 0.00 3.86
5804 5924 5.559227 CATTCGTGCAGAAAAATATCGTCA 58.441 37.500 0.00 0.00 42.91 4.35
5824 5945 6.016024 ACACAGATTACAAGACATGTTGCATT 60.016 34.615 0.00 0.00 43.63 3.56
5825 5946 5.474532 ACACAGATTACAAGACATGTTGCAT 59.525 36.000 0.00 0.00 43.63 3.96
5829 5950 4.216257 GGCACACAGATTACAAGACATGTT 59.784 41.667 0.00 0.00 43.63 2.71
5832 5953 3.002791 CGGCACACAGATTACAAGACAT 58.997 45.455 0.00 0.00 0.00 3.06
5834 5955 1.128692 GCGGCACACAGATTACAAGAC 59.871 52.381 0.00 0.00 0.00 3.01
5885 6008 1.724623 TGCGATGCTGTTCTTCGTAAC 59.275 47.619 0.00 0.00 42.32 2.50
5903 6026 4.092968 CCTTTCAAACCTACGAGTACATGC 59.907 45.833 0.00 0.00 0.00 4.06
5910 6033 3.396260 TCCACCTTTCAAACCTACGAG 57.604 47.619 0.00 0.00 0.00 4.18
5911 6034 3.071892 ACATCCACCTTTCAAACCTACGA 59.928 43.478 0.00 0.00 0.00 3.43
5912 6035 3.408634 ACATCCACCTTTCAAACCTACG 58.591 45.455 0.00 0.00 0.00 3.51
5913 6036 4.394729 TGACATCCACCTTTCAAACCTAC 58.605 43.478 0.00 0.00 0.00 3.18
5914 6037 4.104102 ACTGACATCCACCTTTCAAACCTA 59.896 41.667 0.00 0.00 0.00 3.08
5915 6038 3.117512 ACTGACATCCACCTTTCAAACCT 60.118 43.478 0.00 0.00 0.00 3.50
5918 6041 3.631686 CACACTGACATCCACCTTTCAAA 59.368 43.478 0.00 0.00 0.00 2.69
5922 6045 2.575532 CACACACTGACATCCACCTTT 58.424 47.619 0.00 0.00 0.00 3.11
5929 6052 4.516698 ACTTTCAATCCACACACTGACATC 59.483 41.667 0.00 0.00 0.00 3.06
5936 6059 5.890334 TCTTTGAACTTTCAATCCACACAC 58.110 37.500 5.26 0.00 45.65 3.82
5952 6079 8.304596 ACGATAGATCTACAACAACTCTTTGAA 58.695 33.333 4.10 0.00 36.75 2.69
5977 6104 1.202651 CCCCGACCAGATGATACCAAC 60.203 57.143 0.00 0.00 0.00 3.77
5978 6105 1.128200 CCCCGACCAGATGATACCAA 58.872 55.000 0.00 0.00 0.00 3.67
5979 6106 1.407656 GCCCCGACCAGATGATACCA 61.408 60.000 0.00 0.00 0.00 3.25
5982 6109 0.398522 ACAGCCCCGACCAGATGATA 60.399 55.000 0.00 0.00 0.00 2.15
5983 6110 1.690633 ACAGCCCCGACCAGATGAT 60.691 57.895 0.00 0.00 0.00 2.45
5984 6111 2.284625 ACAGCCCCGACCAGATGA 60.285 61.111 0.00 0.00 0.00 2.92
5985 6112 2.124983 CACAGCCCCGACCAGATG 60.125 66.667 0.00 0.00 0.00 2.90
5991 6118 3.845259 TATCCGCACAGCCCCGAC 61.845 66.667 0.00 0.00 0.00 4.79
5992 6119 3.845259 GTATCCGCACAGCCCCGA 61.845 66.667 0.00 0.00 0.00 5.14
5993 6120 4.910585 GGTATCCGCACAGCCCCG 62.911 72.222 0.00 0.00 0.00 5.73
5994 6121 4.910585 CGGTATCCGCACAGCCCC 62.911 72.222 0.00 0.00 41.17 5.80
6004 6131 1.365699 TCTGCGAAAAAGCGGTATCC 58.634 50.000 0.00 0.00 43.62 2.59
6006 6133 1.467342 GGTTCTGCGAAAAAGCGGTAT 59.533 47.619 0.00 0.00 43.62 2.73
6008 6135 1.098712 TGGTTCTGCGAAAAAGCGGT 61.099 50.000 0.00 0.00 43.62 5.68
6010 6137 1.330306 CATGGTTCTGCGAAAAAGCG 58.670 50.000 0.00 0.00 40.67 4.68
6082 6245 1.298602 TGATTCATTCATGTCGCCCG 58.701 50.000 0.00 0.00 0.00 6.13
6097 6260 6.144854 CGTGTTGAGTGTTGATTGATTGATT 58.855 36.000 0.00 0.00 0.00 2.57
6100 6854 4.221342 CCGTGTTGAGTGTTGATTGATTG 58.779 43.478 0.00 0.00 0.00 2.67
6107 6861 0.176910 TGAGCCGTGTTGAGTGTTGA 59.823 50.000 0.00 0.00 0.00 3.18
6108 6862 0.304705 GTGAGCCGTGTTGAGTGTTG 59.695 55.000 0.00 0.00 0.00 3.33
6109 6863 0.107897 TGTGAGCCGTGTTGAGTGTT 60.108 50.000 0.00 0.00 0.00 3.32
6110 6864 0.106708 ATGTGAGCCGTGTTGAGTGT 59.893 50.000 0.00 0.00 0.00 3.55
6111 6865 0.514255 CATGTGAGCCGTGTTGAGTG 59.486 55.000 0.00 0.00 0.00 3.51
6112 6866 1.230635 GCATGTGAGCCGTGTTGAGT 61.231 55.000 0.00 0.00 32.30 3.41
6113 6867 1.499056 GCATGTGAGCCGTGTTGAG 59.501 57.895 0.00 0.00 32.30 3.02
6132 6886 5.128468 CGAACGAAAACTAGAAAGAAACCG 58.872 41.667 0.00 0.00 0.00 4.44
6144 6900 2.056577 CCTAGCGAACGAACGAAAACT 58.943 47.619 9.67 0.00 35.09 2.66
6178 6934 4.203764 CCGACGAGAAATAACACGATACAC 59.796 45.833 0.00 0.00 0.00 2.90
6307 7069 2.553602 TCGAGTCAGCCGTACTTGTTAA 59.446 45.455 0.00 0.00 31.38 2.01
6343 7105 8.122472 ACGAAATCCCTTTGTTTTAGATGATT 57.878 30.769 0.00 0.00 0.00 2.57
6379 7151 0.734942 ACTTGGAATACACGACGGCG 60.735 55.000 10.39 10.39 44.79 6.46
6391 7163 2.297701 GCAGTTGTTGGAGACTTGGAA 58.702 47.619 0.00 0.00 0.00 3.53
6429 7232 3.705638 CCTGCACAGTCACGCGTG 61.706 66.667 32.76 32.76 36.18 5.34
6513 7316 1.153667 GAAGACTCGCCAGCCAGAG 60.154 63.158 0.00 0.00 40.16 3.35
6546 7349 0.467290 TCGCCAGCCAGAACCTTTTT 60.467 50.000 0.00 0.00 0.00 1.94
6547 7350 0.890996 CTCGCCAGCCAGAACCTTTT 60.891 55.000 0.00 0.00 0.00 2.27
6548 7351 1.302832 CTCGCCAGCCAGAACCTTT 60.303 57.895 0.00 0.00 0.00 3.11
6549 7352 2.348998 CTCGCCAGCCAGAACCTT 59.651 61.111 0.00 0.00 0.00 3.50
6550 7353 2.925170 ACTCGCCAGCCAGAACCT 60.925 61.111 0.00 0.00 0.00 3.50
6551 7354 2.435059 GACTCGCCAGCCAGAACC 60.435 66.667 0.00 0.00 0.00 3.62
6552 7355 2.435059 GGACTCGCCAGCCAGAAC 60.435 66.667 0.00 0.00 36.34 3.01
6553 7356 4.069232 CGGACTCGCCAGCCAGAA 62.069 66.667 0.00 0.00 35.94 3.02
6555 7358 4.803426 GACGGACTCGCCAGCCAG 62.803 72.222 0.00 0.00 40.63 4.85
6575 7378 2.125106 GGATCAGTGGGTGCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
6576 7379 1.741770 GTGGATCAGTGGGTGCGTC 60.742 63.158 0.00 0.00 0.00 5.19
6607 7411 1.906990 TTTAAAATCCCGTTGGCCGA 58.093 45.000 0.00 0.00 39.56 5.54
6701 7506 2.251371 GCCGTTCGCCTGTTTGTC 59.749 61.111 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.