Multiple sequence alignment - TraesCS4A01G015400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G015400 chr4A 100.000 4366 0 0 1702 6067 9615482 9619847 0.000000e+00 8063.0
1 TraesCS4A01G015400 chr4A 100.000 1479 0 0 6280 7758 9620060 9621538 0.000000e+00 2732.0
2 TraesCS4A01G015400 chr4A 100.000 1418 0 0 1 1418 9613781 9615198 0.000000e+00 2619.0
3 TraesCS4A01G015400 chr4A 85.039 127 15 3 4047 4171 688646276 688646400 8.170000e-25 126.0
4 TraesCS4A01G015400 chr4D 92.080 3788 190 46 1705 5398 459080141 459076370 0.000000e+00 5232.0
5 TraesCS4A01G015400 chr4D 94.012 1002 36 10 430 1418 459081166 459080176 0.000000e+00 1496.0
6 TraesCS4A01G015400 chr4D 93.766 802 36 10 6280 7071 459075399 459074602 0.000000e+00 1192.0
7 TraesCS4A01G015400 chr4D 86.564 521 37 14 7180 7696 459074477 459073986 1.900000e-150 544.0
8 TraesCS4A01G015400 chr4D 91.667 228 19 0 5605 5832 459076055 459075828 4.520000e-82 316.0
9 TraesCS4A01G015400 chr4D 85.990 207 26 2 5402 5605 459076329 459076123 1.310000e-52 219.0
10 TraesCS4A01G015400 chr4D 95.614 114 5 0 6999 7112 459074605 459074492 4.780000e-42 183.0
11 TraesCS4A01G015400 chr4D 95.455 66 3 0 7693 7758 459073925 459073860 1.060000e-18 106.0
12 TraesCS4A01G015400 chr4D 82.000 100 18 0 5504 5603 107729648 107729747 1.390000e-12 86.1
13 TraesCS4A01G015400 chr4D 86.667 75 8 1 4282 4356 506872153 506872081 1.790000e-11 82.4
14 TraesCS4A01G015400 chr4B 91.419 3426 186 42 2043 5386 573395739 573392340 0.000000e+00 4599.0
15 TraesCS4A01G015400 chr4B 88.082 1225 82 30 187 1372 573396949 573395750 0.000000e+00 1395.0
16 TraesCS4A01G015400 chr4B 93.465 811 41 8 6280 7084 573391146 573390342 0.000000e+00 1194.0
17 TraesCS4A01G015400 chr4B 89.958 239 23 1 7417 7654 573390097 573389859 2.720000e-79 307.0
18 TraesCS4A01G015400 chr4B 85.965 285 21 4 7123 7404 573390348 573390080 3.540000e-73 287.0
19 TraesCS4A01G015400 chr4B 74.722 720 127 37 4677 5354 393341868 393341162 3.570000e-68 270.0
20 TraesCS4A01G015400 chr4B 84.951 206 26 2 5402 5605 573392292 573392090 3.670000e-48 204.0
21 TraesCS4A01G015400 chr4B 73.684 494 78 28 4820 5277 18141781 18141304 2.260000e-30 145.0
22 TraesCS4A01G015400 chr4B 84.496 129 16 3 4045 4171 417766825 417766951 2.940000e-24 124.0
23 TraesCS4A01G015400 chr4B 96.970 66 2 0 7693 7758 573389768 573389703 2.290000e-20 111.0
24 TraesCS4A01G015400 chr2A 78.037 642 120 13 4656 5276 749052860 749053501 1.220000e-102 385.0
25 TraesCS4A01G015400 chr2A 86.154 130 18 0 4042 4171 711885514 711885385 2.920000e-29 141.0
26 TraesCS4A01G015400 chr2A 89.247 93 10 0 3 95 557060938 557061030 4.920000e-22 117.0
27 TraesCS4A01G015400 chr2A 87.629 97 12 0 1 97 78549833 78549737 6.360000e-21 113.0
28 TraesCS4A01G015400 chr2A 91.111 45 4 0 7597 7641 19484467 19484511 2.340000e-05 62.1
29 TraesCS4A01G015400 chr6D 77.914 652 118 12 4649 5276 26005929 26005280 4.390000e-102 383.0
30 TraesCS4A01G015400 chr3D 80.962 478 81 6 5599 6066 508309582 508309105 3.420000e-98 370.0
31 TraesCS4A01G015400 chr3D 80.000 420 73 6 5600 6015 406411173 406411585 4.550000e-77 300.0
32 TraesCS4A01G015400 chr3D 79.279 333 68 1 4721 5052 613070980 613071312 1.680000e-56 231.0
33 TraesCS4A01G015400 chr3D 84.252 127 20 0 4045 4171 67721037 67721163 2.940000e-24 124.0
34 TraesCS4A01G015400 chr3D 84.112 107 15 2 5498 5603 568185973 568185868 1.380000e-17 102.0
35 TraesCS4A01G015400 chr5D 80.667 450 76 9 5623 6066 435999384 435998940 9.640000e-89 339.0
36 TraesCS4A01G015400 chr2D 79.274 468 87 9 5606 6066 629860214 629859750 1.260000e-82 318.0
37 TraesCS4A01G015400 chr2D 77.816 293 58 7 4653 4942 7684423 7684711 2.880000e-39 174.0
38 TraesCS4A01G015400 chr2D 87.500 128 16 0 4044 4171 535222760 535222633 1.740000e-31 148.0
39 TraesCS4A01G015400 chr2D 75.595 168 39 2 5402 5568 7685180 7685346 1.790000e-11 82.4
40 TraesCS4A01G015400 chr2B 78.924 446 87 4 5599 6038 754778784 754779228 5.890000e-76 296.0
41 TraesCS4A01G015400 chr2B 73.233 665 129 34 4722 5354 17372609 17373256 6.140000e-46 196.0
42 TraesCS4A01G015400 chr2B 75.862 377 57 22 4672 5038 595092940 595092588 2.240000e-35 161.0
43 TraesCS4A01G015400 chr2B 86.154 130 16 1 5874 6001 255255778 255255649 1.050000e-28 139.0
44 TraesCS4A01G015400 chr2B 74.841 314 65 9 4945 5254 9827657 9827354 6.320000e-26 130.0
45 TraesCS4A01G015400 chr2B 90.426 94 9 0 1 94 772579965 772580058 2.940000e-24 124.0
46 TraesCS4A01G015400 chr2B 79.259 135 18 6 5444 5568 428621028 428621162 1.390000e-12 86.1
47 TraesCS4A01G015400 chr1B 79.710 414 70 10 5599 6004 297338876 297338469 3.540000e-73 287.0
48 TraesCS4A01G015400 chr1B 92.593 108 6 1 4183 4288 165334123 165334016 3.750000e-33 154.0
49 TraesCS4A01G015400 chr1B 79.661 118 21 3 5441 5556 614259529 614259645 1.790000e-11 82.4
50 TraesCS4A01G015400 chr6A 78.319 452 85 7 5599 6041 20804746 20804299 5.930000e-71 279.0
51 TraesCS4A01G015400 chr6A 77.434 452 89 8 5599 6041 20772058 20771611 2.780000e-64 257.0
52 TraesCS4A01G015400 chr6A 75.910 357 62 14 5043 5376 20805337 20804982 2.240000e-35 161.0
53 TraesCS4A01G015400 chr6A 94.231 104 5 1 4183 4285 101558268 101558165 2.900000e-34 158.0
54 TraesCS4A01G015400 chr6A 89.130 92 10 0 3 94 564095714 564095805 1.770000e-21 115.0
55 TraesCS4A01G015400 chrUn 82.095 296 46 7 4650 4942 3671064 3671355 6.010000e-61 246.0
56 TraesCS4A01G015400 chrUn 73.889 180 43 3 5090 5266 322969947 322969769 1.400000e-07 69.4
57 TraesCS4A01G015400 chrUn 73.889 180 43 3 5090 5266 322979619 322979441 1.400000e-07 69.4
58 TraesCS4A01G015400 chrUn 74.269 171 40 3 5090 5257 338434470 338434639 1.400000e-07 69.4
59 TraesCS4A01G015400 chrUn 91.304 46 2 2 7604 7647 362533907 362533862 2.340000e-05 62.1
60 TraesCS4A01G015400 chrUn 91.304 46 2 2 7604 7647 362542083 362542038 2.340000e-05 62.1
61 TraesCS4A01G015400 chrUn 91.304 46 2 2 7604 7647 362544127 362544082 2.340000e-05 62.1
62 TraesCS4A01G015400 chr6B 74.430 614 112 19 4656 5248 2926895 2927484 1.010000e-53 222.0
63 TraesCS4A01G015400 chr6B 91.150 113 7 3 4183 4295 493205954 493206063 4.850000e-32 150.0
64 TraesCS4A01G015400 chr6B 83.750 80 13 0 5193 5272 62222692 62222771 8.350000e-10 76.8
65 TraesCS4A01G015400 chr6B 97.500 40 1 0 7601 7640 700577535 700577496 1.400000e-07 69.4
66 TraesCS4A01G015400 chr6B 97.368 38 1 0 7605 7642 649829239 649829276 1.810000e-06 65.8
67 TraesCS4A01G015400 chr7B 95.050 101 5 0 4183 4283 355876360 355876260 8.060000e-35 159.0
68 TraesCS4A01G015400 chr7B 84.615 130 16 3 4044 4171 106108359 106108232 8.170000e-25 126.0
69 TraesCS4A01G015400 chr5B 88.976 127 14 0 4045 4171 172626103 172626229 2.900000e-34 158.0
70 TraesCS4A01G015400 chr5B 92.593 108 7 1 4183 4289 237139780 237139887 3.750000e-33 154.0
71 TraesCS4A01G015400 chr3B 80.488 205 38 1 5400 5602 806047932 806048136 1.040000e-33 156.0
72 TraesCS4A01G015400 chr3B 79.358 218 40 5 4651 4865 417226087 417226302 1.740000e-31 148.0
73 TraesCS4A01G015400 chr3B 86.923 130 15 1 5874 6001 631260132 631260003 2.260000e-30 145.0
74 TraesCS4A01G015400 chr3B 81.739 115 19 1 5954 6066 596081372 596081258 2.300000e-15 95.3
75 TraesCS4A01G015400 chr7A 92.593 108 6 2 4183 4289 735447376 735447270 3.750000e-33 154.0
76 TraesCS4A01G015400 chr7A 89.362 94 10 0 1 94 660407985 660408078 1.370000e-22 119.0
77 TraesCS4A01G015400 chr7A 87.755 98 12 0 4 101 66250941 66251038 1.770000e-21 115.0
78 TraesCS4A01G015400 chr7A 100.000 29 0 0 5599 5627 169450532 169450560 4.000000e-03 54.7
79 TraesCS4A01G015400 chr5A 80.303 198 37 1 5408 5603 476355308 476355111 1.740000e-31 148.0
80 TraesCS4A01G015400 chr5A 80.928 194 28 9 4677 4865 522858439 522858250 2.260000e-30 145.0
81 TraesCS4A01G015400 chr5A 90.526 95 9 0 3 97 680189972 680189878 8.170000e-25 126.0
82 TraesCS4A01G015400 chr5A 88.298 94 11 0 1 94 170089493 170089586 6.360000e-21 113.0
83 TraesCS4A01G015400 chr5A 81.944 72 13 0 5191 5262 374475850 374475779 2.340000e-05 62.1
84 TraesCS4A01G015400 chr3A 89.247 93 10 0 3 95 158691502 158691410 4.920000e-22 117.0
85 TraesCS4A01G015400 chr3A 78.235 170 35 1 5400 5567 654405806 654405975 2.960000e-19 108.0
86 TraesCS4A01G015400 chr3A 77.863 131 23 5 5939 6066 728939237 728939364 8.350000e-10 76.8
87 TraesCS4A01G015400 chr3A 80.488 82 16 0 5189 5270 623602440 623602359 6.500000e-06 63.9
88 TraesCS4A01G015400 chr1A 97.436 39 1 0 7604 7642 313205455 313205493 5.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G015400 chr4A 9613781 9621538 7757 False 4471.333333 8063 100.000000 1 7758 3 chr4A.!!$F2 7757
1 TraesCS4A01G015400 chr4D 459073860 459081166 7306 True 1161.000000 5232 91.893500 430 7758 8 chr4D.!!$R2 7328
2 TraesCS4A01G015400 chr4B 573389703 573396949 7246 True 1156.714286 4599 90.115714 187 7758 7 chr4B.!!$R3 7571
3 TraesCS4A01G015400 chr4B 393341162 393341868 706 True 270.000000 270 74.722000 4677 5354 1 chr4B.!!$R2 677
4 TraesCS4A01G015400 chr2A 749052860 749053501 641 False 385.000000 385 78.037000 4656 5276 1 chr2A.!!$F3 620
5 TraesCS4A01G015400 chr6D 26005280 26005929 649 True 383.000000 383 77.914000 4649 5276 1 chr6D.!!$R1 627
6 TraesCS4A01G015400 chr6A 20804299 20805337 1038 True 220.000000 279 77.114500 5043 6041 2 chr6A.!!$R3 998
7 TraesCS4A01G015400 chr6B 2926895 2927484 589 False 222.000000 222 74.430000 4656 5248 1 chr6B.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 401 0.034380 TTTTGTTCACGGGTGGGTCA 60.034 50.000 0.00 0.00 0.00 4.02 F
433 453 0.178958 AGATCCCGCCGGACTAGAAT 60.179 55.000 5.05 0.00 42.48 2.40 F
437 457 0.249489 CCCGCCGGACTAGAATTCAG 60.249 60.000 5.05 5.85 0.00 3.02 F
1871 1929 0.112995 AGGTGGGCATGAAAGCAAGA 59.887 50.000 0.00 0.00 35.83 3.02 F
2879 2937 0.887387 ATTGCGTACGCCACCAAGTT 60.887 50.000 35.11 7.43 41.09 2.66 F
3364 3458 0.247460 TGGATCTGAACAGCGAGGTG 59.753 55.000 0.26 0.26 0.00 4.00 F
4995 5146 1.133294 TGTATCCGGTCATGAGCCCTA 60.133 52.381 18.81 5.24 0.00 3.53 F
5475 5719 0.319083 TGGATGTTGTAGGTCGCGTT 59.681 50.000 5.77 0.00 0.00 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1342 1.275291 CACCGAACTACTGTGGTCCAT 59.725 52.381 0.00 0.0 30.72 3.41 R
1814 1872 1.471684 CCATGCTCTTTTCAGGCACTC 59.528 52.381 0.00 0.0 38.83 3.51 R
2233 2291 1.758514 AGGATCACCGTCGCCATCT 60.759 57.895 0.00 0.0 41.83 2.90 R
3357 3451 1.064654 GATTTGAGAATGCCACCTCGC 59.935 52.381 0.00 0.0 32.30 5.03 R
3833 3935 3.469859 TCATTGGGTCCCCTATCAAAGA 58.530 45.455 5.13 0.0 36.94 2.52 R
5277 5468 0.683412 AACGAGGTGTGGGGTAAGAC 59.317 55.000 0.00 0.0 0.00 3.01 R
5955 6279 0.109504 GAGCAGACGTGACCTCTCAC 60.110 60.000 0.00 0.0 43.17 3.51 R
7088 7701 0.106708 TCGTGGCTTCTTCACTGCTT 59.893 50.000 0.00 0.0 33.31 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.987901 GTTGTAAATACATTCATTTTTGTGACG 57.012 29.630 0.00 0.00 35.89 4.35
71 72 9.952188 TTGTAAATACATTCATTTTTGTGACGA 57.048 25.926 0.00 0.00 35.89 4.20
72 73 9.605955 TGTAAATACATTCATTTTTGTGACGAG 57.394 29.630 0.00 0.00 30.84 4.18
73 74 9.607285 GTAAATACATTCATTTTTGTGACGAGT 57.393 29.630 0.00 0.00 30.84 4.18
79 80 8.967218 ACATTCATTTTTGTGACGAGTAATTTG 58.033 29.630 0.00 0.00 0.00 2.32
80 81 9.179552 CATTCATTTTTGTGACGAGTAATTTGA 57.820 29.630 0.00 0.00 0.00 2.69
81 82 9.743057 ATTCATTTTTGTGACGAGTAATTTGAA 57.257 25.926 0.00 0.00 0.00 2.69
82 83 9.574458 TTCATTTTTGTGACGAGTAATTTGAAA 57.426 25.926 0.00 0.00 0.00 2.69
83 84 9.015577 TCATTTTTGTGACGAGTAATTTGAAAC 57.984 29.630 0.00 0.00 0.00 2.78
84 85 7.425915 TTTTTGTGACGAGTAATTTGAAACG 57.574 32.000 0.00 0.00 0.00 3.60
85 86 4.718858 TGTGACGAGTAATTTGAAACGG 57.281 40.909 0.00 0.00 0.00 4.44
86 87 4.370049 TGTGACGAGTAATTTGAAACGGA 58.630 39.130 0.00 0.00 0.00 4.69
87 88 4.446385 TGTGACGAGTAATTTGAAACGGAG 59.554 41.667 0.00 0.00 0.00 4.63
88 89 3.991773 TGACGAGTAATTTGAAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
89 90 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
90 91 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
91 92 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
92 93 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
93 94 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
94 95 5.485620 AGTAATTTGAAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
95 96 4.360951 AATTTGAAACGGAGGGAGTACA 57.639 40.909 0.00 0.00 0.00 2.90
96 97 3.842007 TTTGAAACGGAGGGAGTACAA 57.158 42.857 0.00 0.00 0.00 2.41
97 98 2.825861 TGAAACGGAGGGAGTACAAC 57.174 50.000 0.00 0.00 0.00 3.32
98 99 2.322658 TGAAACGGAGGGAGTACAACT 58.677 47.619 0.00 0.00 0.00 3.16
99 100 2.701951 TGAAACGGAGGGAGTACAACTT 59.298 45.455 0.00 0.00 0.00 2.66
100 101 3.135167 TGAAACGGAGGGAGTACAACTTT 59.865 43.478 0.00 0.00 0.00 2.66
101 102 3.851458 AACGGAGGGAGTACAACTTTT 57.149 42.857 0.00 0.00 0.00 2.27
102 103 3.397849 ACGGAGGGAGTACAACTTTTC 57.602 47.619 0.00 0.00 0.00 2.29
103 104 2.038164 ACGGAGGGAGTACAACTTTTCC 59.962 50.000 0.00 0.00 0.00 3.13
104 105 2.038033 CGGAGGGAGTACAACTTTTCCA 59.962 50.000 0.00 0.00 0.00 3.53
105 106 3.676093 GGAGGGAGTACAACTTTTCCAG 58.324 50.000 0.00 0.00 0.00 3.86
106 107 3.075148 GAGGGAGTACAACTTTTCCAGC 58.925 50.000 0.00 0.00 0.00 4.85
107 108 1.804748 GGGAGTACAACTTTTCCAGCG 59.195 52.381 0.00 0.00 0.00 5.18
108 109 1.197036 GGAGTACAACTTTTCCAGCGC 59.803 52.381 0.00 0.00 0.00 5.92
109 110 1.197036 GAGTACAACTTTTCCAGCGCC 59.803 52.381 2.29 0.00 0.00 6.53
110 111 0.110373 GTACAACTTTTCCAGCGCCG 60.110 55.000 2.29 0.00 0.00 6.46
111 112 0.249953 TACAACTTTTCCAGCGCCGA 60.250 50.000 2.29 0.00 0.00 5.54
112 113 1.098712 ACAACTTTTCCAGCGCCGAA 61.099 50.000 2.29 3.05 0.00 4.30
113 114 0.385974 CAACTTTTCCAGCGCCGAAG 60.386 55.000 2.29 4.00 0.00 3.79
126 127 4.996976 CGAAGGTCTGTCTGTGGG 57.003 61.111 0.00 0.00 0.00 4.61
127 128 2.351777 CGAAGGTCTGTCTGTGGGA 58.648 57.895 0.00 0.00 0.00 4.37
128 129 0.038159 CGAAGGTCTGTCTGTGGGAC 60.038 60.000 0.00 0.00 44.70 4.46
135 136 2.048127 GTCTGTGGGACGCTGGTC 60.048 66.667 0.00 0.00 42.66 4.02
136 137 2.523168 TCTGTGGGACGCTGGTCA 60.523 61.111 0.00 0.00 45.28 4.02
137 138 2.047844 CTGTGGGACGCTGGTCAG 60.048 66.667 0.00 0.00 45.28 3.51
138 139 3.596066 CTGTGGGACGCTGGTCAGG 62.596 68.421 0.00 0.00 45.28 3.86
139 140 3.626924 GTGGGACGCTGGTCAGGT 61.627 66.667 0.00 0.00 45.28 4.00
140 141 2.118732 TGGGACGCTGGTCAGGTA 59.881 61.111 0.00 0.00 45.28 3.08
141 142 1.982395 TGGGACGCTGGTCAGGTAG 60.982 63.158 0.00 0.00 45.28 3.18
142 143 2.722201 GGGACGCTGGTCAGGTAGG 61.722 68.421 0.00 0.00 45.28 3.18
143 144 1.681327 GGACGCTGGTCAGGTAGGA 60.681 63.158 0.00 0.00 45.28 2.94
144 145 1.511768 GACGCTGGTCAGGTAGGAC 59.488 63.158 0.00 0.00 42.91 3.85
145 146 0.966370 GACGCTGGTCAGGTAGGACT 60.966 60.000 0.00 0.00 42.91 3.85
146 147 1.251527 ACGCTGGTCAGGTAGGACTG 61.252 60.000 0.00 0.00 37.91 3.51
147 148 1.251527 CGCTGGTCAGGTAGGACTGT 61.252 60.000 0.00 0.00 39.48 3.55
148 149 0.533032 GCTGGTCAGGTAGGACTGTC 59.467 60.000 0.00 0.00 39.48 3.51
149 150 1.924731 CTGGTCAGGTAGGACTGTCA 58.075 55.000 10.38 0.00 39.48 3.58
150 151 2.248248 CTGGTCAGGTAGGACTGTCAA 58.752 52.381 10.38 0.00 39.48 3.18
151 152 1.968493 TGGTCAGGTAGGACTGTCAAC 59.032 52.381 10.38 7.02 39.48 3.18
152 153 1.968493 GGTCAGGTAGGACTGTCAACA 59.032 52.381 10.38 0.00 39.48 3.33
162 163 3.425578 CTGTCAACAGGTAGGCTCG 57.574 57.895 2.08 0.00 40.20 5.03
163 164 0.888619 CTGTCAACAGGTAGGCTCGA 59.111 55.000 2.08 0.00 40.20 4.04
164 165 0.888619 TGTCAACAGGTAGGCTCGAG 59.111 55.000 8.45 8.45 0.00 4.04
165 166 0.889306 GTCAACAGGTAGGCTCGAGT 59.111 55.000 15.13 0.00 0.00 4.18
166 167 0.888619 TCAACAGGTAGGCTCGAGTG 59.111 55.000 15.13 5.59 0.00 3.51
167 168 0.888619 CAACAGGTAGGCTCGAGTGA 59.111 55.000 15.13 0.00 0.00 3.41
168 169 1.478510 CAACAGGTAGGCTCGAGTGAT 59.521 52.381 15.13 2.84 0.00 3.06
169 170 1.107114 ACAGGTAGGCTCGAGTGATG 58.893 55.000 15.13 7.37 0.00 3.07
170 171 1.341089 ACAGGTAGGCTCGAGTGATGA 60.341 52.381 15.13 0.00 0.00 2.92
171 172 1.751351 CAGGTAGGCTCGAGTGATGAA 59.249 52.381 15.13 0.00 0.00 2.57
172 173 2.166459 CAGGTAGGCTCGAGTGATGAAA 59.834 50.000 15.13 0.00 0.00 2.69
173 174 2.166664 AGGTAGGCTCGAGTGATGAAAC 59.833 50.000 15.13 3.34 0.00 2.78
174 175 2.186076 GTAGGCTCGAGTGATGAAACG 58.814 52.381 15.13 0.00 0.00 3.60
175 176 0.108615 AGGCTCGAGTGATGAAACGG 60.109 55.000 15.13 0.00 0.00 4.44
176 177 1.696832 GGCTCGAGTGATGAAACGGC 61.697 60.000 15.13 0.00 0.00 5.68
177 178 1.014044 GCTCGAGTGATGAAACGGCA 61.014 55.000 15.13 0.00 0.00 5.69
178 179 1.645034 CTCGAGTGATGAAACGGCAT 58.355 50.000 3.62 0.00 0.00 4.40
179 180 1.325640 CTCGAGTGATGAAACGGCATG 59.674 52.381 3.62 0.00 0.00 4.06
180 181 1.078709 CGAGTGATGAAACGGCATGT 58.921 50.000 0.00 0.00 0.00 3.21
181 182 1.201954 CGAGTGATGAAACGGCATGTG 60.202 52.381 0.00 0.00 0.00 3.21
182 183 1.131126 GAGTGATGAAACGGCATGTGG 59.869 52.381 0.00 0.00 0.00 4.17
183 184 0.456653 GTGATGAAACGGCATGTGGC 60.457 55.000 0.00 0.00 43.74 5.01
193 194 1.454572 GGCATGTGGCGGCATAATGA 61.455 55.000 29.68 9.98 46.16 2.57
200 201 1.317613 GGCGGCATAATGACCATTCA 58.682 50.000 3.07 0.00 35.73 2.57
203 204 2.849942 CGGCATAATGACCATTCAGGA 58.150 47.619 0.00 0.00 41.22 3.86
214 215 3.184628 ACCATTCAGGAGGATGAAGACA 58.815 45.455 0.00 0.00 42.20 3.41
219 220 4.494091 TCAGGAGGATGAAGACAAATCC 57.506 45.455 0.00 0.00 42.39 3.01
245 246 8.364142 CCATGGACTTTGATGTAACCTTTTAAA 58.636 33.333 5.56 0.00 0.00 1.52
246 247 9.927668 CATGGACTTTGATGTAACCTTTTAAAT 57.072 29.630 0.00 0.00 0.00 1.40
255 256 9.331282 TGATGTAACCTTTTAAATTTTTGTGGG 57.669 29.630 0.00 0.00 0.00 4.61
256 257 8.684386 ATGTAACCTTTTAAATTTTTGTGGGG 57.316 30.769 0.00 0.00 0.00 4.96
258 259 7.553044 TGTAACCTTTTAAATTTTTGTGGGGTG 59.447 33.333 0.00 0.00 0.00 4.61
262 263 8.107729 ACCTTTTAAATTTTTGTGGGGTGTTTA 58.892 29.630 0.00 0.00 0.00 2.01
268 269 7.680442 AATTTTTGTGGGGTGTTTATATTGC 57.320 32.000 0.00 0.00 0.00 3.56
270 271 5.398603 TTTGTGGGGTGTTTATATTGCTG 57.601 39.130 0.00 0.00 0.00 4.41
271 272 3.360867 TGTGGGGTGTTTATATTGCTGG 58.639 45.455 0.00 0.00 0.00 4.85
272 273 3.010696 TGTGGGGTGTTTATATTGCTGGA 59.989 43.478 0.00 0.00 0.00 3.86
277 297 5.362430 GGGGTGTTTATATTGCTGGATTTGA 59.638 40.000 0.00 0.00 0.00 2.69
279 299 6.461509 GGGTGTTTATATTGCTGGATTTGAGG 60.462 42.308 0.00 0.00 0.00 3.86
286 306 4.335400 TTGCTGGATTTGAGGGTTTTTC 57.665 40.909 0.00 0.00 0.00 2.29
287 307 3.575805 TGCTGGATTTGAGGGTTTTTCT 58.424 40.909 0.00 0.00 0.00 2.52
294 314 3.518992 TTGAGGGTTTTTCTACCTGGG 57.481 47.619 0.00 0.00 38.30 4.45
344 364 0.686112 CGCTTCCCCTCTCTTCTCCT 60.686 60.000 0.00 0.00 0.00 3.69
351 371 2.359781 CCCCTCTCTTCTCCTGGTGTAT 60.360 54.545 0.00 0.00 0.00 2.29
357 377 7.366011 CCCTCTCTTCTCCTGGTGTATAAAATT 60.366 40.741 0.00 0.00 0.00 1.82
358 378 8.705594 CCTCTCTTCTCCTGGTGTATAAAATTA 58.294 37.037 0.00 0.00 0.00 1.40
359 379 9.757227 CTCTCTTCTCCTGGTGTATAAAATTAG 57.243 37.037 0.00 0.00 0.00 1.73
379 399 2.158579 AGTATTTTGTTCACGGGTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
380 400 1.324383 ATTTTGTTCACGGGTGGGTC 58.676 50.000 0.00 0.00 0.00 4.46
381 401 0.034380 TTTTGTTCACGGGTGGGTCA 60.034 50.000 0.00 0.00 0.00 4.02
382 402 0.464735 TTTGTTCACGGGTGGGTCAG 60.465 55.000 0.00 0.00 0.00 3.51
383 403 1.628238 TTGTTCACGGGTGGGTCAGT 61.628 55.000 0.00 0.00 0.00 3.41
384 404 1.147600 GTTCACGGGTGGGTCAGTT 59.852 57.895 0.00 0.00 0.00 3.16
385 405 0.464916 GTTCACGGGTGGGTCAGTTT 60.465 55.000 0.00 0.00 0.00 2.66
386 406 0.256464 TTCACGGGTGGGTCAGTTTT 59.744 50.000 0.00 0.00 0.00 2.43
387 407 0.256464 TCACGGGTGGGTCAGTTTTT 59.744 50.000 0.00 0.00 0.00 1.94
424 444 0.679505 TTTATGAGGAGATCCCGCCG 59.320 55.000 0.00 0.00 40.87 6.46
426 446 2.076597 TATGAGGAGATCCCGCCGGA 62.077 60.000 5.05 0.00 44.33 5.14
427 447 3.607661 GAGGAGATCCCGCCGGAC 61.608 72.222 5.05 0.00 42.48 4.79
428 448 4.144727 AGGAGATCCCGCCGGACT 62.145 66.667 5.05 0.08 42.48 3.85
429 449 2.203451 GGAGATCCCGCCGGACTA 60.203 66.667 5.05 0.00 42.48 2.59
430 450 2.269529 GGAGATCCCGCCGGACTAG 61.270 68.421 5.05 0.00 42.48 2.57
431 451 1.228184 GAGATCCCGCCGGACTAGA 60.228 63.158 5.05 0.00 42.48 2.43
432 452 0.822532 GAGATCCCGCCGGACTAGAA 60.823 60.000 5.05 0.00 42.48 2.10
433 453 0.178958 AGATCCCGCCGGACTAGAAT 60.179 55.000 5.05 0.00 42.48 2.40
434 454 0.680061 GATCCCGCCGGACTAGAATT 59.320 55.000 5.05 0.00 42.48 2.17
435 455 0.680061 ATCCCGCCGGACTAGAATTC 59.320 55.000 5.05 0.00 42.48 2.17
436 456 0.685131 TCCCGCCGGACTAGAATTCA 60.685 55.000 5.05 0.00 31.13 2.57
437 457 0.249489 CCCGCCGGACTAGAATTCAG 60.249 60.000 5.05 5.85 0.00 3.02
489 524 1.521681 CGAAGGCCCGTCATCTTCC 60.522 63.158 0.00 0.00 34.93 3.46
654 690 0.995024 ATCCGATTCCATCCCATCCC 59.005 55.000 0.00 0.00 0.00 3.85
741 789 4.078516 GGCCACTTACCGGTCGCT 62.079 66.667 12.40 0.00 0.00 4.93
742 790 2.713967 GGCCACTTACCGGTCGCTA 61.714 63.158 12.40 0.00 0.00 4.26
775 823 1.152383 GGAGGCGACGAATTACCTGC 61.152 60.000 0.00 0.00 33.29 4.85
843 891 3.770040 CCGATCCCCACGCACTCA 61.770 66.667 0.00 0.00 0.00 3.41
855 904 2.358737 CACTCACCGGCAGGGAAC 60.359 66.667 8.08 0.00 43.47 3.62
930 979 1.064296 GATCGATCTGTGCGACGGT 59.936 57.895 18.29 0.00 40.94 4.83
1049 1098 3.891400 CGCCAATGCCATGACGGG 61.891 66.667 0.00 0.00 34.06 5.28
1220 1273 4.883585 CCTTTGCCTGCTCAATCTATGTTA 59.116 41.667 0.00 0.00 0.00 2.41
1227 1280 4.933330 TGCTCAATCTATGTTACTCCGTC 58.067 43.478 0.00 0.00 0.00 4.79
1350 1407 1.135717 CAGTCGACTCTGCTCACTCTG 60.136 57.143 16.96 0.00 0.00 3.35
1396 1453 5.530915 TCAAAACACAGAGAAATGGTAGTGG 59.469 40.000 0.00 0.00 0.00 4.00
1398 1455 4.273148 ACACAGAGAAATGGTAGTGGTC 57.727 45.455 0.00 0.00 0.00 4.02
1409 1466 1.831736 GGTAGTGGTCATGCTGGTAGT 59.168 52.381 0.00 0.00 0.00 2.73
1761 1819 6.239887 GGGTGATTATATAGGAGCAAACAGGA 60.240 42.308 0.00 0.00 0.00 3.86
1791 1849 7.850982 CACTAGTATTTGTGTTTCAGTGACAAC 59.149 37.037 0.00 1.95 35.32 3.32
1796 1854 2.863740 TGTGTTTCAGTGACAACGCTAG 59.136 45.455 21.46 0.00 34.97 3.42
1814 1872 3.243134 GCTAGAGTGGAGTAAACTAGGCG 60.243 52.174 0.00 0.00 33.46 5.52
1830 1888 1.499502 GCGAGTGCCTGAAAAGAGC 59.500 57.895 0.00 0.00 33.98 4.09
1871 1929 0.112995 AGGTGGGCATGAAAGCAAGA 59.887 50.000 0.00 0.00 35.83 3.02
1880 1938 2.203480 AAAGCAAGAAGGCGGGCA 60.203 55.556 3.78 0.00 39.27 5.36
1930 1988 8.818141 TGTCTAGTGAGAATGTTTAGTTTGAG 57.182 34.615 0.00 0.00 31.96 3.02
1931 1989 7.385205 TGTCTAGTGAGAATGTTTAGTTTGAGC 59.615 37.037 0.00 0.00 31.96 4.26
2137 2195 7.966753 CAGTAAGCTTATTCGTAGTTGACACTA 59.033 37.037 9.88 0.00 34.06 2.74
2146 2204 8.803201 ATTCGTAGTTGACACTATGATACATG 57.197 34.615 5.37 0.00 46.53 3.21
2206 2264 9.539825 CAGATTACAGATCTAAGCATAAGTGTT 57.460 33.333 0.00 0.00 0.00 3.32
2303 2361 9.025041 CAAGGGAGTTTTTCAAGGATAATACTT 57.975 33.333 0.00 0.00 0.00 2.24
2358 2416 5.550403 TGGACCTGGAAGTAAGTTAAAGGAT 59.450 40.000 0.00 0.00 0.00 3.24
2359 2417 6.045106 TGGACCTGGAAGTAAGTTAAAGGATT 59.955 38.462 0.00 0.00 0.00 3.01
2362 2420 6.045106 ACCTGGAAGTAAGTTAAAGGATTCCA 59.955 38.462 5.29 3.93 41.69 3.53
2365 2423 6.273730 TGGAAGTAAGTTAAAGGATTCCAGGA 59.726 38.462 5.29 0.00 39.70 3.86
2366 2424 6.598457 GGAAGTAAGTTAAAGGATTCCAGGAC 59.402 42.308 5.29 0.00 35.79 3.85
2367 2425 6.697641 AGTAAGTTAAAGGATTCCAGGACA 57.302 37.500 5.29 0.00 0.00 4.02
2368 2426 6.473758 AGTAAGTTAAAGGATTCCAGGACAC 58.526 40.000 5.29 0.00 0.00 3.67
2369 2427 4.302559 AGTTAAAGGATTCCAGGACACC 57.697 45.455 5.29 0.00 0.00 4.16
2671 2729 5.289193 CCTTGATTGTGTGTCAAAAGTTGTG 59.711 40.000 0.00 0.00 39.62 3.33
2699 2757 9.125026 CCATCTGCTCTTAATTACCAACTATTT 57.875 33.333 0.00 0.00 0.00 1.40
2762 2820 9.725019 TGTCAGATTCTTACTTGTGATGTTAAT 57.275 29.630 0.09 0.00 0.00 1.40
2879 2937 0.887387 ATTGCGTACGCCACCAAGTT 60.887 50.000 35.11 7.43 41.09 2.66
2979 3038 8.807118 TCATGGCCAAACAAAGTTATGTATAAA 58.193 29.630 10.96 0.00 32.02 1.40
2981 3040 7.952671 TGGCCAAACAAAGTTATGTATAAACA 58.047 30.769 0.61 0.00 40.69 2.83
3251 3344 5.810095 AGAGGGGATTGTTCTAAAAGACAG 58.190 41.667 0.00 0.00 0.00 3.51
3255 3348 3.444034 GGATTGTTCTAAAAGACAGCCCC 59.556 47.826 0.00 0.00 0.00 5.80
3304 3397 7.400439 AGATCCTCATTTGAATTGTCTCTTCA 58.600 34.615 0.00 0.00 0.00 3.02
3326 3419 9.645059 CTTCACTGAGTCTTCTGAACAATTATA 57.355 33.333 0.00 0.00 0.00 0.98
3357 3451 8.175925 TGATCTATAGACTTGGATCTGAACAG 57.824 38.462 4.10 0.00 36.51 3.16
3364 3458 0.247460 TGGATCTGAACAGCGAGGTG 59.753 55.000 0.26 0.26 0.00 4.00
3382 3476 4.922206 AGGTGGCATTCTCAAATCAAGTA 58.078 39.130 0.00 0.00 0.00 2.24
3625 3719 6.178239 ACGAACCAACTTATGCATCTTTAC 57.822 37.500 0.19 0.00 0.00 2.01
3760 3862 4.033932 CGAACTCACACACAAAGATGAACA 59.966 41.667 0.00 0.00 0.00 3.18
3833 3935 7.696992 ACGTAATTTGTCCTAAATCACCAAT 57.303 32.000 0.00 0.00 0.00 3.16
3907 4009 5.300034 TGGGAAGCTGCATGTATTCTAATTG 59.700 40.000 1.02 0.00 0.00 2.32
4038 4140 6.939730 TGTGCTTCAGTATCTCCAATTGTTTA 59.060 34.615 4.43 0.00 0.00 2.01
4103 4205 3.728076 GCATGGTCTTTGATGCATGAT 57.272 42.857 2.46 0.00 43.75 2.45
4144 4246 4.083003 ACCGAAATGCATACGTTGAACATT 60.083 37.500 19.53 0.00 32.53 2.71
4152 4254 9.585099 AATGCATACGTTGAACATTTATCAATT 57.415 25.926 0.00 0.00 38.89 2.32
4225 4327 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4265 4382 4.636249 TCAAGGCTTTGTTGTTGTTGTTT 58.364 34.783 8.56 0.00 35.73 2.83
4268 4385 6.706270 TCAAGGCTTTGTTGTTGTTGTTTTTA 59.294 30.769 8.56 0.00 35.73 1.52
4271 4392 7.525759 AGGCTTTGTTGTTGTTGTTTTTATTG 58.474 30.769 0.00 0.00 0.00 1.90
4353 4486 4.573201 CGCGTCTTATATTTTGGGAAGGAA 59.427 41.667 0.00 0.00 0.00 3.36
4427 4561 6.443792 ACCTTTTAACACCGACAATTTGATC 58.556 36.000 2.79 0.00 0.00 2.92
4454 4588 4.515432 GCGTCTAAGCGATAATGGTTTTC 58.485 43.478 0.00 0.00 0.00 2.29
4504 4638 8.727100 TCTTTCAGCTATTGGGAGATATTCTA 57.273 34.615 0.00 0.00 0.00 2.10
4595 4729 2.886523 AACCTTTTAAGGGTAACACGCC 59.113 45.455 12.87 0.00 46.58 5.68
4662 4796 4.682320 CGCTACAAGTTTCCTTAGGGCATA 60.682 45.833 0.00 0.00 0.00 3.14
4790 4926 8.308931 ACATTTCAACTACTATCCGAACTAACA 58.691 33.333 0.00 0.00 0.00 2.41
4814 4950 3.380142 ACCAAATTCGTGCAAACATGAC 58.620 40.909 0.00 0.00 41.55 3.06
4874 5013 4.819630 ACGGCGGATTTCATATAAACATGT 59.180 37.500 13.24 0.00 0.00 3.21
4918 5057 5.061179 ACATACTTGAACTAAAAGCGGTGT 58.939 37.500 0.00 0.00 0.00 4.16
4924 5063 2.521105 ACTAAAAGCGGTGTTCGTCT 57.479 45.000 0.00 0.00 41.72 4.18
4927 5066 1.658994 AAAAGCGGTGTTCGTCTGAA 58.341 45.000 0.00 0.00 41.72 3.02
4995 5146 1.133294 TGTATCCGGTCATGAGCCCTA 60.133 52.381 18.81 5.24 0.00 3.53
5088 5276 3.324930 CTGCCAGCCTCCACCTCA 61.325 66.667 0.00 0.00 0.00 3.86
5106 5294 2.740981 CTCAGCTAATCGGCCAATGATC 59.259 50.000 2.24 0.00 0.00 2.92
5152 5340 1.457831 GGAGGGTAGGAGCGGTGAT 60.458 63.158 0.00 0.00 0.00 3.06
5187 5375 1.298340 CGGTGGTAACCTGCCATGA 59.702 57.895 0.00 0.00 45.17 3.07
5192 5380 3.371595 GGTGGTAACCTGCCATGAACTAT 60.372 47.826 0.00 0.00 43.84 2.12
5212 5403 2.196925 CCTCGCTATCGGAGGTGCT 61.197 63.158 0.00 0.00 36.13 4.40
5282 5485 2.802792 CCGGCGATGTCGGTCTTA 59.197 61.111 9.30 0.00 46.58 2.10
5319 5526 2.202676 CCTCGTCGAGCTCCTTGC 60.203 66.667 17.02 0.00 43.29 4.01
5354 5561 1.330655 CCACCTGACGCTGGAGGTAT 61.331 60.000 9.15 0.00 40.85 2.73
5355 5562 1.399714 CACCTGACGCTGGAGGTATA 58.600 55.000 9.15 0.00 40.85 1.47
5380 5587 2.839632 ATCGAGGCGGATCTGGCA 60.840 61.111 28.06 9.85 36.77 4.92
5382 5589 3.531207 CGAGGCGGATCTGGCAGA 61.531 66.667 28.06 21.19 36.77 4.26
5392 5599 1.630126 ATCTGGCAGATGGAGCGGTT 61.630 55.000 28.33 2.13 32.80 4.44
5398 5605 0.824109 CAGATGGAGCGGTTGGACTA 59.176 55.000 0.00 0.00 0.00 2.59
5400 5607 0.530870 GATGGAGCGGTTGGACTAGC 60.531 60.000 0.00 0.00 0.00 3.42
5433 5677 4.070552 GTTGAGCCGCTCCTCCGT 62.071 66.667 17.81 0.00 0.00 4.69
5434 5678 4.069232 TTGAGCCGCTCCTCCGTG 62.069 66.667 17.81 0.00 0.00 4.94
5455 5699 1.562783 GCTGGTACTCTTGGAGGAGT 58.437 55.000 2.73 2.73 46.68 3.85
5463 5707 2.982488 ACTCTTGGAGGAGTTGGATGTT 59.018 45.455 0.00 0.00 43.14 2.71
5469 5713 2.572104 GGAGGAGTTGGATGTTGTAGGT 59.428 50.000 0.00 0.00 0.00 3.08
5475 5719 0.319083 TGGATGTTGTAGGTCGCGTT 59.681 50.000 5.77 0.00 0.00 4.84
5588 5835 0.469917 CTAAGGGTGGCGATGGTGAT 59.530 55.000 0.00 0.00 0.00 3.06
5645 5963 1.320344 TGCTCCGGCGATAGTCTGTT 61.320 55.000 9.30 0.00 42.25 3.16
5664 5982 1.621992 TCGAGAGAGCTTTGGAGTGT 58.378 50.000 0.00 0.00 34.84 3.55
5667 5985 2.288457 CGAGAGAGCTTTGGAGTGTGAA 60.288 50.000 0.00 0.00 0.00 3.18
5685 6003 1.142688 AAGAGGCCATGGTGGGAGTT 61.143 55.000 14.67 0.00 38.19 3.01
5690 6008 2.334946 CCATGGTGGGAGTTGTGCG 61.335 63.158 2.57 0.00 32.67 5.34
5790 6112 2.335092 TAGGCGGTAGAGGGACGGAG 62.335 65.000 0.00 0.00 0.00 4.63
5820 6142 1.736032 CGGAGTAGGTTCTTCGGCAAG 60.736 57.143 0.00 0.00 33.31 4.01
5837 6159 3.564511 GCAAGTGCGTGTCATTAATGTT 58.435 40.909 14.97 0.00 0.00 2.71
5895 6217 0.802222 GAATGCAGAGCAGTCGCGTA 60.802 55.000 5.77 0.00 43.33 4.42
5900 6222 2.257371 GAGCAGTCGCGTACACCA 59.743 61.111 5.77 0.00 45.49 4.17
5927 6249 3.038417 GCGCGCGGCATTATCTCT 61.038 61.111 33.06 0.00 42.87 3.10
5955 6279 2.753966 CCGCTTCAATGCCGGTCAG 61.754 63.158 1.90 0.00 0.00 3.51
6054 6380 3.371063 GTGCGGACGAGTGAGGGA 61.371 66.667 0.00 0.00 0.00 4.20
6307 6844 5.277490 GCCAGGCTTTTGAAAAATGAGAAAC 60.277 40.000 3.29 0.00 0.00 2.78
6370 6907 3.950397 TCCAAGCCAACCTATACAAGTG 58.050 45.455 0.00 0.00 0.00 3.16
6406 6943 4.582701 TTTCAAGGTACAATGCCAAGTG 57.417 40.909 0.00 0.00 0.00 3.16
6479 7016 8.840833 AAAACTAAACATGTTGTTTCTTGGTT 57.159 26.923 20.88 12.45 46.61 3.67
6480 7017 7.826260 AACTAAACATGTTGTTTCTTGGTTG 57.174 32.000 12.82 0.00 46.61 3.77
6481 7018 5.810074 ACTAAACATGTTGTTTCTTGGTTGC 59.190 36.000 12.82 0.00 46.61 4.17
6482 7019 2.808244 ACATGTTGTTTCTTGGTTGCG 58.192 42.857 0.00 0.00 0.00 4.85
6483 7020 2.165437 ACATGTTGTTTCTTGGTTGCGT 59.835 40.909 0.00 0.00 0.00 5.24
6501 7039 1.602920 CGTGTCTAGCTGTTCACTGCA 60.603 52.381 10.96 0.00 42.33 4.41
6527 7065 7.807977 ATAAAAATAAGCCTCGTGACATCAT 57.192 32.000 0.00 0.00 0.00 2.45
6639 7178 8.258007 CACCTTAATTACTTACATCTCTCCACA 58.742 37.037 0.00 0.00 0.00 4.17
6640 7179 8.478877 ACCTTAATTACTTACATCTCTCCACAG 58.521 37.037 0.00 0.00 0.00 3.66
6684 7223 1.078143 GGGTTTCTCTGGCGCTGAT 60.078 57.895 7.64 0.00 0.00 2.90
6732 7271 0.320697 GACAAGGCCCAAGTACTCGT 59.679 55.000 0.00 0.00 0.00 4.18
6737 7276 1.582968 GCCCAAGTACTCGTCGACA 59.417 57.895 17.16 1.87 0.00 4.35
6746 7285 3.052620 CTCGTCGACATCACGGCCT 62.053 63.158 17.16 0.00 37.85 5.19
6752 7291 1.796796 GACATCACGGCCTTGAAGC 59.203 57.895 16.83 4.90 0.00 3.86
6760 7299 2.029838 CGGCCTTGAAGCTGTAGAAT 57.970 50.000 0.00 0.00 34.26 2.40
6803 7342 5.221244 GCCTTCTTCTTGTTCTTTTGCCTTA 60.221 40.000 0.00 0.00 0.00 2.69
6804 7343 6.682861 GCCTTCTTCTTGTTCTTTTGCCTTAA 60.683 38.462 0.00 0.00 0.00 1.85
6917 7459 5.922053 AGCAGAAAAGAAGGAATTGCTTTT 58.078 33.333 13.87 5.22 42.60 2.27
7003 7545 4.391830 CACACGGTCATGTACAAATAGCTT 59.608 41.667 0.00 0.00 0.00 3.74
7012 7554 7.538678 GTCATGTACAAATAGCTTTGACTTTGG 59.461 37.037 12.52 0.00 43.71 3.28
7093 7706 8.976986 AGCAAAAGATTGAACTAATTAAGCAG 57.023 30.769 0.00 0.00 38.94 4.24
7094 7707 8.579863 AGCAAAAGATTGAACTAATTAAGCAGT 58.420 29.630 0.00 0.00 38.94 4.40
7095 7708 8.642020 GCAAAAGATTGAACTAATTAAGCAGTG 58.358 33.333 0.00 0.00 38.94 3.66
7096 7709 9.897744 CAAAAGATTGAACTAATTAAGCAGTGA 57.102 29.630 0.00 0.00 38.94 3.41
7099 7712 9.507329 AAGATTGAACTAATTAAGCAGTGAAGA 57.493 29.630 0.00 0.00 0.00 2.87
7100 7713 9.507329 AGATTGAACTAATTAAGCAGTGAAGAA 57.493 29.630 0.00 0.00 0.00 2.52
7101 7714 9.766277 GATTGAACTAATTAAGCAGTGAAGAAG 57.234 33.333 0.00 0.00 0.00 2.85
7102 7715 7.133891 TGAACTAATTAAGCAGTGAAGAAGC 57.866 36.000 0.00 0.00 0.00 3.86
7103 7716 6.149474 TGAACTAATTAAGCAGTGAAGAAGCC 59.851 38.462 0.00 0.00 0.00 4.35
7104 7717 5.560724 ACTAATTAAGCAGTGAAGAAGCCA 58.439 37.500 0.00 0.00 0.00 4.75
7105 7718 4.773323 AATTAAGCAGTGAAGAAGCCAC 57.227 40.909 0.00 0.00 34.89 5.01
7106 7719 1.795768 TAAGCAGTGAAGAAGCCACG 58.204 50.000 0.00 0.00 39.38 4.94
7107 7720 0.106708 AAGCAGTGAAGAAGCCACGA 59.893 50.000 0.00 0.00 39.38 4.35
7108 7721 0.106708 AGCAGTGAAGAAGCCACGAA 59.893 50.000 0.00 0.00 39.38 3.85
7109 7722 0.944386 GCAGTGAAGAAGCCACGAAA 59.056 50.000 0.00 0.00 39.38 3.46
7110 7723 1.069636 GCAGTGAAGAAGCCACGAAAG 60.070 52.381 0.00 0.00 39.38 2.62
7111 7724 1.532868 CAGTGAAGAAGCCACGAAAGG 59.467 52.381 0.00 0.00 39.38 3.11
7119 7732 4.208632 CCACGAAAGGCTGCCTAG 57.791 61.111 23.69 18.17 31.13 3.02
7139 7752 1.371183 CTTGAACTCCTCCGCCACA 59.629 57.895 0.00 0.00 0.00 4.17
7149 7762 2.184322 CCGCCACAGACGCTATGT 59.816 61.111 0.00 0.00 0.00 2.29
7166 7779 4.802051 TCCGCCATTCCCAGCAGC 62.802 66.667 0.00 0.00 0.00 5.25
7168 7781 3.515286 CGCCATTCCCAGCAGCAG 61.515 66.667 0.00 0.00 0.00 4.24
7212 7825 4.529109 ACTCCTAAGTCTCAAGCACTTC 57.471 45.455 0.00 0.00 35.63 3.01
7264 7877 6.697395 TCTCACAGCTTAGTTTGTTGCTATA 58.303 36.000 0.00 0.00 34.10 1.31
7276 7889 5.389859 TTGTTGCTATATGTGCTTTGCTT 57.610 34.783 4.57 0.00 0.00 3.91
7283 7896 6.044682 GCTATATGTGCTTTGCTTTGGATTT 58.955 36.000 0.00 0.00 0.00 2.17
7289 7902 2.836262 CTTTGCTTTGGATTTGGTGCA 58.164 42.857 0.00 0.00 0.00 4.57
7290 7903 3.404899 CTTTGCTTTGGATTTGGTGCAT 58.595 40.909 0.00 0.00 0.00 3.96
7306 7919 3.821033 GGTGCATTATATGGTTGGTCTCC 59.179 47.826 0.00 0.00 0.00 3.71
7334 7947 2.989166 GTTGGTTGCTATGCTTTGCTTC 59.011 45.455 7.48 1.39 0.00 3.86
7345 7958 7.383029 TGCTATGCTTTGCTTCATTTATAATGC 59.617 33.333 7.48 0.00 0.00 3.56
7353 7968 9.585099 TTTGCTTCATTTATAATGCTAGTTTGG 57.415 29.630 0.00 0.00 0.00 3.28
7404 8019 6.155565 TCAATCTGATGGCAAAATGATCCTTT 59.844 34.615 0.00 0.00 0.00 3.11
7405 8020 6.555463 ATCTGATGGCAAAATGATCCTTTT 57.445 33.333 3.16 3.16 0.00 2.27
7406 8021 6.363167 TCTGATGGCAAAATGATCCTTTTT 57.637 33.333 6.03 2.43 0.00 1.94
7431 8046 7.437793 TTTTTGAGAAATGGCAAAATGATCC 57.562 32.000 0.00 0.00 41.81 3.36
7432 8047 6.363167 TTTGAGAAATGGCAAAATGATCCT 57.637 33.333 0.00 0.00 31.64 3.24
7433 8048 6.363167 TTGAGAAATGGCAAAATGATCCTT 57.637 33.333 0.00 0.00 0.00 3.36
7437 8052 6.168389 AGAAATGGCAAAATGATCCTTGAAC 58.832 36.000 0.00 0.00 0.00 3.18
7444 8059 5.860716 GCAAAATGATCCTTGAACAGAGTTC 59.139 40.000 3.05 3.05 0.00 3.01
7447 8062 3.668447 TGATCCTTGAACAGAGTTCAGC 58.332 45.455 11.80 3.41 0.00 4.26
7448 8063 3.071457 TGATCCTTGAACAGAGTTCAGCA 59.929 43.478 11.80 5.46 0.00 4.41
7532 8148 2.509870 GTGCAAGATAACAAAGCGAGC 58.490 47.619 0.00 0.00 0.00 5.03
7555 8171 5.448496 GCCCCTTTGATTCAAAACAAACAAC 60.448 40.000 12.62 0.00 32.75 3.32
7574 8190 1.233019 CTGCACTGGTCACTTGAAGG 58.767 55.000 0.00 0.00 0.00 3.46
7577 8193 2.158623 TGCACTGGTCACTTGAAGGAAT 60.159 45.455 0.00 0.00 0.00 3.01
7580 8196 4.557496 GCACTGGTCACTTGAAGGAATTTC 60.557 45.833 0.00 0.00 36.29 2.17
7691 8308 5.470368 TCAATGCATACCGTAGCTAGAATC 58.530 41.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.987901 CGTCACAAAAATGAATGTATTTACAAC 57.012 29.630 0.00 0.00 39.99 3.32
45 46 9.952188 TCGTCACAAAAATGAATGTATTTACAA 57.048 25.926 0.00 0.00 39.99 2.41
46 47 9.605955 CTCGTCACAAAAATGAATGTATTTACA 57.394 29.630 0.00 0.00 40.98 2.41
47 48 9.607285 ACTCGTCACAAAAATGAATGTATTTAC 57.393 29.630 0.00 0.00 30.47 2.01
53 54 8.967218 CAAATTACTCGTCACAAAAATGAATGT 58.033 29.630 0.00 0.00 0.00 2.71
54 55 9.179552 TCAAATTACTCGTCACAAAAATGAATG 57.820 29.630 0.00 0.00 0.00 2.67
55 56 9.743057 TTCAAATTACTCGTCACAAAAATGAAT 57.257 25.926 0.00 0.00 0.00 2.57
56 57 9.574458 TTTCAAATTACTCGTCACAAAAATGAA 57.426 25.926 0.00 0.00 0.00 2.57
57 58 9.015577 GTTTCAAATTACTCGTCACAAAAATGA 57.984 29.630 0.00 0.00 0.00 2.57
58 59 7.990499 CGTTTCAAATTACTCGTCACAAAAATG 59.010 33.333 0.00 0.00 0.00 2.32
59 60 7.166804 CCGTTTCAAATTACTCGTCACAAAAAT 59.833 33.333 0.00 0.00 0.00 1.82
60 61 6.469595 CCGTTTCAAATTACTCGTCACAAAAA 59.530 34.615 0.00 0.00 0.00 1.94
61 62 5.966503 CCGTTTCAAATTACTCGTCACAAAA 59.033 36.000 0.00 0.00 0.00 2.44
62 63 5.293814 TCCGTTTCAAATTACTCGTCACAAA 59.706 36.000 0.00 0.00 0.00 2.83
63 64 4.809958 TCCGTTTCAAATTACTCGTCACAA 59.190 37.500 0.00 0.00 0.00 3.33
64 65 4.370049 TCCGTTTCAAATTACTCGTCACA 58.630 39.130 0.00 0.00 0.00 3.58
65 66 4.143179 CCTCCGTTTCAAATTACTCGTCAC 60.143 45.833 0.00 0.00 0.00 3.67
66 67 3.991773 CCTCCGTTTCAAATTACTCGTCA 59.008 43.478 0.00 0.00 0.00 4.35
67 68 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
68 69 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
69 70 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
70 71 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
71 72 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
72 73 5.240121 TGTACTCCCTCCGTTTCAAATTAC 58.760 41.667 0.00 0.00 0.00 1.89
73 74 5.486735 TGTACTCCCTCCGTTTCAAATTA 57.513 39.130 0.00 0.00 0.00 1.40
74 75 4.360951 TGTACTCCCTCCGTTTCAAATT 57.639 40.909 0.00 0.00 0.00 1.82
75 76 4.070009 GTTGTACTCCCTCCGTTTCAAAT 58.930 43.478 0.00 0.00 0.00 2.32
76 77 3.135167 AGTTGTACTCCCTCCGTTTCAAA 59.865 43.478 0.00 0.00 0.00 2.69
77 78 2.701951 AGTTGTACTCCCTCCGTTTCAA 59.298 45.455 0.00 0.00 0.00 2.69
78 79 2.322658 AGTTGTACTCCCTCCGTTTCA 58.677 47.619 0.00 0.00 0.00 2.69
79 80 3.397849 AAGTTGTACTCCCTCCGTTTC 57.602 47.619 0.00 0.00 0.00 2.78
80 81 3.851458 AAAGTTGTACTCCCTCCGTTT 57.149 42.857 0.00 0.00 0.00 3.60
81 82 3.495629 GGAAAAGTTGTACTCCCTCCGTT 60.496 47.826 0.00 0.00 0.00 4.44
82 83 2.038164 GGAAAAGTTGTACTCCCTCCGT 59.962 50.000 0.00 0.00 0.00 4.69
83 84 2.038033 TGGAAAAGTTGTACTCCCTCCG 59.962 50.000 0.00 0.00 0.00 4.63
84 85 3.676093 CTGGAAAAGTTGTACTCCCTCC 58.324 50.000 0.00 0.00 0.00 4.30
85 86 3.075148 GCTGGAAAAGTTGTACTCCCTC 58.925 50.000 0.00 0.00 0.00 4.30
86 87 2.550208 CGCTGGAAAAGTTGTACTCCCT 60.550 50.000 0.00 0.00 0.00 4.20
87 88 1.804748 CGCTGGAAAAGTTGTACTCCC 59.195 52.381 0.00 0.00 0.00 4.30
88 89 1.197036 GCGCTGGAAAAGTTGTACTCC 59.803 52.381 0.00 0.00 0.00 3.85
89 90 1.197036 GGCGCTGGAAAAGTTGTACTC 59.803 52.381 7.64 0.00 0.00 2.59
90 91 1.235724 GGCGCTGGAAAAGTTGTACT 58.764 50.000 7.64 0.00 0.00 2.73
91 92 0.110373 CGGCGCTGGAAAAGTTGTAC 60.110 55.000 8.83 0.00 0.00 2.90
92 93 0.249953 TCGGCGCTGGAAAAGTTGTA 60.250 50.000 17.88 0.00 0.00 2.41
93 94 1.098712 TTCGGCGCTGGAAAAGTTGT 61.099 50.000 17.88 0.00 0.00 3.32
94 95 0.385974 CTTCGGCGCTGGAAAAGTTG 60.386 55.000 17.88 0.40 0.00 3.16
95 96 1.515521 CCTTCGGCGCTGGAAAAGTT 61.516 55.000 17.88 0.00 0.00 2.66
96 97 1.966451 CCTTCGGCGCTGGAAAAGT 60.966 57.895 17.88 0.00 0.00 2.66
97 98 1.912371 GACCTTCGGCGCTGGAAAAG 61.912 60.000 17.88 12.59 0.00 2.27
98 99 1.964373 GACCTTCGGCGCTGGAAAA 60.964 57.895 17.88 2.14 0.00 2.29
99 100 2.358247 GACCTTCGGCGCTGGAAA 60.358 61.111 17.88 2.96 0.00 3.13
100 101 3.311110 AGACCTTCGGCGCTGGAA 61.311 61.111 17.88 14.70 0.00 3.53
101 102 4.069232 CAGACCTTCGGCGCTGGA 62.069 66.667 17.88 6.74 0.00 3.86
102 103 4.379243 ACAGACCTTCGGCGCTGG 62.379 66.667 17.88 14.48 34.23 4.85
103 104 2.811317 GACAGACCTTCGGCGCTG 60.811 66.667 10.86 10.86 35.47 5.18
104 105 2.992114 AGACAGACCTTCGGCGCT 60.992 61.111 7.64 0.00 0.00 5.92
105 106 2.811317 CAGACAGACCTTCGGCGC 60.811 66.667 0.00 0.00 0.00 6.53
106 107 1.734477 CACAGACAGACCTTCGGCG 60.734 63.158 0.00 0.00 0.00 6.46
107 108 1.374758 CCACAGACAGACCTTCGGC 60.375 63.158 0.00 0.00 0.00 5.54
108 109 1.185618 TCCCACAGACAGACCTTCGG 61.186 60.000 0.00 0.00 0.00 4.30
109 110 0.038159 GTCCCACAGACAGACCTTCG 60.038 60.000 0.00 0.00 45.55 3.79
110 111 0.038159 CGTCCCACAGACAGACCTTC 60.038 60.000 0.00 0.00 46.69 3.46
111 112 2.050269 CGTCCCACAGACAGACCTT 58.950 57.895 0.00 0.00 46.69 3.50
112 113 2.574955 GCGTCCCACAGACAGACCT 61.575 63.158 0.00 0.00 46.69 3.85
113 114 2.048127 GCGTCCCACAGACAGACC 60.048 66.667 0.00 0.00 46.69 3.85
114 115 1.373497 CAGCGTCCCACAGACAGAC 60.373 63.158 0.00 0.00 46.69 3.51
115 116 2.574018 CCAGCGTCCCACAGACAGA 61.574 63.158 0.00 0.00 46.69 3.41
116 117 2.047844 CCAGCGTCCCACAGACAG 60.048 66.667 0.00 0.00 46.69 3.51
117 118 2.842462 ACCAGCGTCCCACAGACA 60.842 61.111 0.00 0.00 46.69 3.41
118 119 2.048127 GACCAGCGTCCCACAGAC 60.048 66.667 0.00 0.00 42.54 3.51
119 120 2.523168 TGACCAGCGTCCCACAGA 60.523 61.111 0.00 0.00 38.32 3.41
120 121 2.047844 CTGACCAGCGTCCCACAG 60.048 66.667 0.00 0.00 38.32 3.66
121 122 3.625897 CCTGACCAGCGTCCCACA 61.626 66.667 0.00 0.00 38.32 4.17
122 123 2.227089 CTACCTGACCAGCGTCCCAC 62.227 65.000 0.00 0.00 38.32 4.61
123 124 1.982395 CTACCTGACCAGCGTCCCA 60.982 63.158 0.00 0.00 38.32 4.37
124 125 2.722201 CCTACCTGACCAGCGTCCC 61.722 68.421 0.00 0.00 38.32 4.46
125 126 1.681327 TCCTACCTGACCAGCGTCC 60.681 63.158 0.00 0.00 38.32 4.79
126 127 0.966370 AGTCCTACCTGACCAGCGTC 60.966 60.000 0.00 0.00 39.66 5.19
127 128 1.076906 AGTCCTACCTGACCAGCGT 59.923 57.895 0.00 0.00 35.83 5.07
128 129 1.251527 ACAGTCCTACCTGACCAGCG 61.252 60.000 0.00 0.00 35.83 5.18
129 130 0.533032 GACAGTCCTACCTGACCAGC 59.467 60.000 0.00 0.00 35.83 4.85
130 131 1.924731 TGACAGTCCTACCTGACCAG 58.075 55.000 0.00 0.00 35.83 4.00
131 132 1.968493 GTTGACAGTCCTACCTGACCA 59.032 52.381 0.00 0.00 35.83 4.02
132 133 1.968493 TGTTGACAGTCCTACCTGACC 59.032 52.381 0.00 0.00 35.83 4.02
133 134 2.028930 CCTGTTGACAGTCCTACCTGAC 60.029 54.545 10.03 0.00 42.27 3.51
134 135 2.248248 CCTGTTGACAGTCCTACCTGA 58.752 52.381 10.03 0.00 42.27 3.86
135 136 1.971357 ACCTGTTGACAGTCCTACCTG 59.029 52.381 10.03 0.00 42.27 4.00
136 137 2.400467 ACCTGTTGACAGTCCTACCT 57.600 50.000 10.03 0.00 42.27 3.08
137 138 2.496470 CCTACCTGTTGACAGTCCTACC 59.504 54.545 10.03 0.00 42.27 3.18
138 139 2.094130 GCCTACCTGTTGACAGTCCTAC 60.094 54.545 10.03 0.00 42.27 3.18
139 140 2.176889 GCCTACCTGTTGACAGTCCTA 58.823 52.381 10.03 0.00 42.27 2.94
140 141 0.977395 GCCTACCTGTTGACAGTCCT 59.023 55.000 10.03 0.00 42.27 3.85
141 142 0.977395 AGCCTACCTGTTGACAGTCC 59.023 55.000 10.03 0.00 42.27 3.85
142 143 1.402984 CGAGCCTACCTGTTGACAGTC 60.403 57.143 10.03 0.00 42.27 3.51
143 144 0.603569 CGAGCCTACCTGTTGACAGT 59.396 55.000 10.03 1.90 42.27 3.55
144 145 0.888619 TCGAGCCTACCTGTTGACAG 59.111 55.000 4.15 4.15 43.40 3.51
145 146 0.888619 CTCGAGCCTACCTGTTGACA 59.111 55.000 0.00 0.00 0.00 3.58
146 147 0.889306 ACTCGAGCCTACCTGTTGAC 59.111 55.000 13.61 0.00 0.00 3.18
147 148 0.888619 CACTCGAGCCTACCTGTTGA 59.111 55.000 13.61 0.00 0.00 3.18
148 149 0.888619 TCACTCGAGCCTACCTGTTG 59.111 55.000 13.61 0.00 0.00 3.33
149 150 1.478510 CATCACTCGAGCCTACCTGTT 59.521 52.381 13.61 0.00 0.00 3.16
150 151 1.107114 CATCACTCGAGCCTACCTGT 58.893 55.000 13.61 0.00 0.00 4.00
151 152 1.393603 TCATCACTCGAGCCTACCTG 58.606 55.000 13.61 1.81 0.00 4.00
152 153 2.145397 TTCATCACTCGAGCCTACCT 57.855 50.000 13.61 0.00 0.00 3.08
153 154 2.541556 GTTTCATCACTCGAGCCTACC 58.458 52.381 13.61 0.00 0.00 3.18
154 155 2.186076 CGTTTCATCACTCGAGCCTAC 58.814 52.381 13.61 0.63 0.00 3.18
155 156 1.134367 CCGTTTCATCACTCGAGCCTA 59.866 52.381 13.61 0.00 0.00 3.93
156 157 0.108615 CCGTTTCATCACTCGAGCCT 60.109 55.000 13.61 0.00 0.00 4.58
157 158 1.696832 GCCGTTTCATCACTCGAGCC 61.697 60.000 13.61 0.00 0.00 4.70
158 159 1.014044 TGCCGTTTCATCACTCGAGC 61.014 55.000 13.61 0.00 0.00 5.03
159 160 1.325640 CATGCCGTTTCATCACTCGAG 59.674 52.381 11.84 11.84 0.00 4.04
160 161 1.337728 ACATGCCGTTTCATCACTCGA 60.338 47.619 0.00 0.00 0.00 4.04
161 162 1.078709 ACATGCCGTTTCATCACTCG 58.921 50.000 0.00 0.00 0.00 4.18
162 163 1.131126 CCACATGCCGTTTCATCACTC 59.869 52.381 0.00 0.00 0.00 3.51
163 164 1.167851 CCACATGCCGTTTCATCACT 58.832 50.000 0.00 0.00 0.00 3.41
164 165 0.456653 GCCACATGCCGTTTCATCAC 60.457 55.000 0.00 0.00 0.00 3.06
165 166 1.882311 GCCACATGCCGTTTCATCA 59.118 52.632 0.00 0.00 0.00 3.07
166 167 1.226379 CGCCACATGCCGTTTCATC 60.226 57.895 0.00 0.00 36.24 2.92
167 168 2.699768 CCGCCACATGCCGTTTCAT 61.700 57.895 0.00 0.00 36.24 2.57
168 169 3.361158 CCGCCACATGCCGTTTCA 61.361 61.111 0.00 0.00 36.24 2.69
169 170 4.776647 GCCGCCACATGCCGTTTC 62.777 66.667 0.00 0.00 36.24 2.78
171 172 3.986072 TATGCCGCCACATGCCGTT 62.986 57.895 0.00 0.00 36.24 4.44
172 173 3.986072 TTATGCCGCCACATGCCGT 62.986 57.895 0.00 0.00 36.24 5.68
173 174 2.554636 ATTATGCCGCCACATGCCG 61.555 57.895 0.00 0.00 36.24 5.69
174 175 1.007038 CATTATGCCGCCACATGCC 60.007 57.895 0.00 0.00 36.24 4.40
175 176 0.318107 GTCATTATGCCGCCACATGC 60.318 55.000 0.00 0.00 0.00 4.06
176 177 0.311790 GGTCATTATGCCGCCACATG 59.688 55.000 0.00 0.00 0.00 3.21
177 178 0.106769 TGGTCATTATGCCGCCACAT 60.107 50.000 0.00 0.00 0.00 3.21
178 179 0.106769 ATGGTCATTATGCCGCCACA 60.107 50.000 5.46 0.00 31.47 4.17
179 180 1.001378 GAATGGTCATTATGCCGCCAC 60.001 52.381 5.46 0.00 31.47 5.01
180 181 1.317613 GAATGGTCATTATGCCGCCA 58.682 50.000 5.72 5.72 0.00 5.69
181 182 1.267806 CTGAATGGTCATTATGCCGCC 59.732 52.381 0.00 0.00 31.85 6.13
182 183 1.267806 CCTGAATGGTCATTATGCCGC 59.732 52.381 0.00 0.00 31.85 6.53
183 184 2.810274 CTCCTGAATGGTCATTATGCCG 59.190 50.000 0.00 0.00 37.07 5.69
184 185 3.152341 CCTCCTGAATGGTCATTATGCC 58.848 50.000 0.00 0.00 37.07 4.40
185 186 4.090761 TCCTCCTGAATGGTCATTATGC 57.909 45.455 0.00 0.00 37.07 3.14
193 194 3.184628 TGTCTTCATCCTCCTGAATGGT 58.815 45.455 0.00 0.00 34.76 3.55
200 201 3.192944 TGGGATTTGTCTTCATCCTCCT 58.807 45.455 0.00 0.00 33.82 3.69
203 204 3.528905 TCCATGGGATTTGTCTTCATCCT 59.471 43.478 13.02 0.00 33.82 3.24
214 215 5.422012 GGTTACATCAAAGTCCATGGGATTT 59.578 40.000 13.02 10.43 33.01 2.17
219 220 5.982890 AAAGGTTACATCAAAGTCCATGG 57.017 39.130 4.97 4.97 0.00 3.66
245 246 6.878389 CAGCAATATAAACACCCCACAAAAAT 59.122 34.615 0.00 0.00 0.00 1.82
246 247 6.226787 CAGCAATATAAACACCCCACAAAAA 58.773 36.000 0.00 0.00 0.00 1.94
250 251 3.010696 TCCAGCAATATAAACACCCCACA 59.989 43.478 0.00 0.00 0.00 4.17
251 252 3.626930 TCCAGCAATATAAACACCCCAC 58.373 45.455 0.00 0.00 0.00 4.61
252 253 4.534647 ATCCAGCAATATAAACACCCCA 57.465 40.909 0.00 0.00 0.00 4.96
253 254 5.362430 TCAAATCCAGCAATATAAACACCCC 59.638 40.000 0.00 0.00 0.00 4.95
255 256 6.461509 CCCTCAAATCCAGCAATATAAACACC 60.462 42.308 0.00 0.00 0.00 4.16
256 257 6.096846 ACCCTCAAATCCAGCAATATAAACAC 59.903 38.462 0.00 0.00 0.00 3.32
258 259 6.715347 ACCCTCAAATCCAGCAATATAAAC 57.285 37.500 0.00 0.00 0.00 2.01
262 263 6.441604 AGAAAAACCCTCAAATCCAGCAATAT 59.558 34.615 0.00 0.00 0.00 1.28
264 265 4.594491 AGAAAAACCCTCAAATCCAGCAAT 59.406 37.500 0.00 0.00 0.00 3.56
265 266 3.966665 AGAAAAACCCTCAAATCCAGCAA 59.033 39.130 0.00 0.00 0.00 3.91
267 268 4.082190 GGTAGAAAAACCCTCAAATCCAGC 60.082 45.833 0.00 0.00 33.02 4.85
268 269 5.183904 CAGGTAGAAAAACCCTCAAATCCAG 59.816 44.000 0.00 0.00 40.71 3.86
270 271 4.462834 CCAGGTAGAAAAACCCTCAAATCC 59.537 45.833 0.00 0.00 40.71 3.01
271 272 4.462834 CCCAGGTAGAAAAACCCTCAAATC 59.537 45.833 0.00 0.00 40.71 2.17
272 273 4.140782 ACCCAGGTAGAAAAACCCTCAAAT 60.141 41.667 0.00 0.00 40.71 2.32
277 297 3.920841 ACATACCCAGGTAGAAAAACCCT 59.079 43.478 2.50 0.00 40.71 4.34
279 299 4.018688 AGGACATACCCAGGTAGAAAAACC 60.019 45.833 2.50 1.17 40.05 3.27
324 344 1.681486 GGAGAAGAGAGGGGAAGCGG 61.681 65.000 0.00 0.00 0.00 5.52
331 351 2.534042 TACACCAGGAGAAGAGAGGG 57.466 55.000 0.00 0.00 0.00 4.30
351 371 8.298140 CCACCCGTGAACAAAATACTAATTTTA 58.702 33.333 0.00 0.00 42.18 1.52
357 377 3.072768 ACCCACCCGTGAACAAAATACTA 59.927 43.478 0.00 0.00 0.00 1.82
358 378 2.158579 ACCCACCCGTGAACAAAATACT 60.159 45.455 0.00 0.00 0.00 2.12
359 379 2.227149 GACCCACCCGTGAACAAAATAC 59.773 50.000 0.00 0.00 0.00 1.89
390 410 9.567776 TCTCCTCATAAATAAAAACTGTCACAA 57.432 29.630 0.00 0.00 0.00 3.33
391 411 9.739276 ATCTCCTCATAAATAAAAACTGTCACA 57.261 29.630 0.00 0.00 0.00 3.58
393 413 9.396022 GGATCTCCTCATAAATAAAAACTGTCA 57.604 33.333 0.00 0.00 0.00 3.58
394 414 8.841300 GGGATCTCCTCATAAATAAAAACTGTC 58.159 37.037 0.00 0.00 35.95 3.51
395 415 7.499232 CGGGATCTCCTCATAAATAAAAACTGT 59.501 37.037 0.00 0.00 35.95 3.55
396 416 7.520614 GCGGGATCTCCTCATAAATAAAAACTG 60.521 40.741 0.00 0.00 35.95 3.16
424 444 1.213296 TGGGCCCTGAATTCTAGTCC 58.787 55.000 25.70 6.80 0.00 3.85
426 446 2.711547 GGTATGGGCCCTGAATTCTAGT 59.288 50.000 25.70 0.00 0.00 2.57
427 447 2.711009 TGGTATGGGCCCTGAATTCTAG 59.289 50.000 25.70 2.75 0.00 2.43
428 448 2.441750 GTGGTATGGGCCCTGAATTCTA 59.558 50.000 25.70 0.00 0.00 2.10
429 449 1.215423 GTGGTATGGGCCCTGAATTCT 59.785 52.381 25.70 1.16 0.00 2.40
430 450 1.215423 AGTGGTATGGGCCCTGAATTC 59.785 52.381 25.70 5.97 0.00 2.17
431 451 1.215423 GAGTGGTATGGGCCCTGAATT 59.785 52.381 25.70 5.15 0.00 2.17
432 452 0.846693 GAGTGGTATGGGCCCTGAAT 59.153 55.000 25.70 11.23 0.00 2.57
433 453 1.279025 GGAGTGGTATGGGCCCTGAA 61.279 60.000 25.70 2.00 0.00 3.02
434 454 1.692749 GGAGTGGTATGGGCCCTGA 60.693 63.158 25.70 7.89 0.00 3.86
435 455 2.919043 GGAGTGGTATGGGCCCTG 59.081 66.667 25.70 0.00 0.00 4.45
436 456 2.768344 CGGAGTGGTATGGGCCCT 60.768 66.667 25.70 11.37 0.00 5.19
437 457 3.087906 ACGGAGTGGTATGGGCCC 61.088 66.667 17.59 17.59 42.51 5.80
458 492 1.632948 GCCTTCGGCCGTAGTTTGAC 61.633 60.000 27.22 9.91 44.06 3.18
506 541 7.453034 TGTCGCTCTGATTTTTATTTTCGTAG 58.547 34.615 0.00 0.00 0.00 3.51
507 542 7.354025 TGTCGCTCTGATTTTTATTTTCGTA 57.646 32.000 0.00 0.00 0.00 3.43
508 543 6.236017 TGTCGCTCTGATTTTTATTTTCGT 57.764 33.333 0.00 0.00 0.00 3.85
654 690 4.503910 TGGGTAGTGAATCAAGACGAATG 58.496 43.478 0.00 0.00 0.00 2.67
756 804 1.152383 GCAGGTAATTCGTCGCCTCC 61.152 60.000 0.00 0.00 0.00 4.30
803 851 2.280865 GAATTAGGGCTCGGGCGG 60.281 66.667 0.00 0.00 39.81 6.13
1128 1177 1.520564 CGGATGGTCGGCGATGAAA 60.521 57.895 14.79 0.00 0.00 2.69
1220 1273 8.309163 TGTTAACAATAAATTAACGACGGAGT 57.691 30.769 5.64 0.00 42.81 3.85
1282 1335 7.453752 ACCGAACTACTGTGGTCCATATATAAT 59.546 37.037 0.00 0.00 0.00 1.28
1283 1336 6.779049 ACCGAACTACTGTGGTCCATATATAA 59.221 38.462 0.00 0.00 0.00 0.98
1284 1337 6.208007 CACCGAACTACTGTGGTCCATATATA 59.792 42.308 0.00 0.00 30.72 0.86
1285 1338 5.010719 CACCGAACTACTGTGGTCCATATAT 59.989 44.000 0.00 0.00 30.72 0.86
1286 1339 4.340097 CACCGAACTACTGTGGTCCATATA 59.660 45.833 0.00 0.00 30.72 0.86
1287 1340 3.132289 CACCGAACTACTGTGGTCCATAT 59.868 47.826 0.00 0.00 30.72 1.78
1288 1341 2.494471 CACCGAACTACTGTGGTCCATA 59.506 50.000 0.00 0.00 30.72 2.74
1289 1342 1.275291 CACCGAACTACTGTGGTCCAT 59.725 52.381 0.00 0.00 30.72 3.41
1306 1363 6.536941 TGATTTCTAAAAGTTTTGCCAACACC 59.463 34.615 11.18 0.00 0.00 4.16
1350 1407 8.992835 TTGATATATGTCTACATGCTGATCAC 57.007 34.615 5.85 0.00 37.15 3.06
1396 1453 2.878406 ACACACAAACTACCAGCATGAC 59.122 45.455 0.00 0.00 39.69 3.06
1718 1775 4.819630 TCACCCTCACTGAAACACAAATAC 59.180 41.667 0.00 0.00 0.00 1.89
1761 1819 7.931407 TCACTGAAACACAAATACTAGTGATGT 59.069 33.333 5.39 4.97 38.55 3.06
1791 1849 3.243134 GCCTAGTTTACTCCACTCTAGCG 60.243 52.174 0.00 0.00 0.00 4.26
1796 1854 2.754002 ACTCGCCTAGTTTACTCCACTC 59.246 50.000 0.00 0.00 33.35 3.51
1814 1872 1.471684 CCATGCTCTTTTCAGGCACTC 59.528 52.381 0.00 0.00 38.83 3.51
1830 1888 3.881089 TCTAATGTCTCAATGCAGCCATG 59.119 43.478 0.00 0.00 0.00 3.66
1839 1897 2.846206 TGCCCACCTCTAATGTCTCAAT 59.154 45.455 0.00 0.00 0.00 2.57
1880 1938 2.103143 CGAGCACGAATCTCGGCT 59.897 61.111 14.45 10.44 46.82 5.52
1930 1988 6.970043 TCATTATAAACATAAAAGTGCACCGC 59.030 34.615 14.63 0.00 0.00 5.68
1931 1989 7.165812 GCTCATTATAAACATAAAAGTGCACCG 59.834 37.037 14.63 0.00 0.00 4.94
1994 2052 6.980051 ATGTAACGAAAAGGTTGTCCTATC 57.020 37.500 0.00 0.00 44.35 2.08
2096 2154 6.319141 AGCTTACTGAAAGAACCAAATGAC 57.681 37.500 0.00 0.00 37.38 3.06
2168 2226 7.960262 AGATCTGTAATCTGCATATTCAGTCA 58.040 34.615 16.39 7.42 35.63 3.41
2206 2264 5.393068 AGAGAATGGATTTCATTGCCCTA 57.607 39.130 0.00 0.00 45.36 3.53
2233 2291 1.758514 AGGATCACCGTCGCCATCT 60.759 57.895 0.00 0.00 41.83 2.90
2266 2324 2.851263 ACTCCCTTGTCAATTGCGTA 57.149 45.000 0.00 0.00 0.00 4.42
2303 2361 6.128849 GGAACGCAAACAATTACTAGACGTAA 60.129 38.462 0.00 0.00 41.97 3.18
2474 2532 6.747739 GTCTGAGAAAAGAAACAAACTTCCAC 59.252 38.462 0.00 0.00 0.00 4.02
2671 2729 6.116126 AGTTGGTAATTAAGAGCAGATGGAC 58.884 40.000 0.00 0.00 0.00 4.02
2879 2937 3.342668 ATGGCCATACCGTGCAGCA 62.343 57.895 19.18 0.00 43.94 4.41
2991 3071 7.262772 AGCAAATCATGATGTTTGGATAACAG 58.737 34.615 18.75 0.00 36.19 3.16
3255 3348 2.087646 GAGAGTAAGGGGCTGCTTTTG 58.912 52.381 0.00 0.00 0.00 2.44
3304 3397 9.950496 ATGTTATAATTGTTCAGAAGACTCAGT 57.050 29.630 0.00 0.00 0.00 3.41
3326 3419 9.775854 CAGATCCAAGTCTATAGATCAAATGTT 57.224 33.333 5.57 0.00 38.06 2.71
3357 3451 1.064654 GATTTGAGAATGCCACCTCGC 59.935 52.381 0.00 0.00 32.30 5.03
3414 3508 6.481313 CAGGAGTTCCTATTACATGTGTGATG 59.519 42.308 9.11 0.00 46.65 3.07
3658 3760 8.861086 TCAAATAAATGGTAGGCTAACAAAACA 58.139 29.630 17.50 2.74 0.00 2.83
3775 3877 6.072230 GGCCTATGAATTCAAGCTTCTATTCC 60.072 42.308 13.09 9.45 0.00 3.01
3776 3878 6.488006 TGGCCTATGAATTCAAGCTTCTATTC 59.512 38.462 13.09 17.36 0.00 1.75
3833 3935 3.469859 TCATTGGGTCCCCTATCAAAGA 58.530 45.455 5.13 0.00 36.94 2.52
4011 4113 5.413833 ACAATTGGAGATACTGAAGCACAAG 59.586 40.000 10.83 0.00 0.00 3.16
4038 4140 3.815507 TGGGAAGGAGGGAGTAGAAAAT 58.184 45.455 0.00 0.00 0.00 1.82
4129 4231 8.393395 ACAATTGATAAATGTTCAACGTATGC 57.607 30.769 13.59 0.00 36.02 3.14
4152 4254 8.977412 TCACTTAGAGACAAATACCATGATACA 58.023 33.333 0.00 0.00 0.00 2.29
4160 4262 9.383519 TCATGATTTCACTTAGAGACAAATACC 57.616 33.333 0.00 0.00 0.00 2.73
4244 4346 5.355467 AAAACAACAACAACAAAGCCTTG 57.645 34.783 0.00 0.00 38.61 3.61
4290 4423 7.094805 GGTCTTCATTGCACAACTTATGAGTAA 60.095 37.037 0.00 0.00 34.21 2.24
4293 4426 5.181811 TGGTCTTCATTGCACAACTTATGAG 59.818 40.000 0.00 0.00 0.00 2.90
4297 4430 5.843673 TTTGGTCTTCATTGCACAACTTA 57.156 34.783 0.00 0.00 0.00 2.24
4325 4458 5.057819 TCCCAAAATATAAGACGCGCATTA 58.942 37.500 5.73 5.98 0.00 1.90
4334 4467 6.086011 TGCCTTCCTTCCCAAAATATAAGA 57.914 37.500 0.00 0.00 0.00 2.10
4353 4486 7.915397 GTCGATTAAATGTGATACAAAATGCCT 59.085 33.333 0.00 0.00 0.00 4.75
4454 4588 9.301153 GAAATACCATGCAATACAAGTTTAAGG 57.699 33.333 0.00 0.00 0.00 2.69
4504 4638 6.944290 TCACTGATGAATTTGTTCTCTCCAAT 59.056 34.615 0.00 0.00 0.00 3.16
4590 4724 5.521010 AGCATCAAAATGATAAAATGGCGTG 59.479 36.000 0.00 0.00 34.28 5.34
4662 4796 5.006746 GGAAATTTGCGAGTCGACATTAGAT 59.993 40.000 18.61 1.52 0.00 1.98
4790 4926 3.724508 TGTTTGCACGAATTTGGTCAT 57.275 38.095 0.00 0.00 0.00 3.06
4874 5013 6.825944 TGTCCGAAATGTAATGAATTCCAA 57.174 33.333 2.27 0.00 0.00 3.53
4918 5057 6.879276 ATTATACCTCGAGATTCAGACGAA 57.121 37.500 15.71 0.00 35.70 3.85
4975 5126 2.133195 GGGCTCATGACCGGATACA 58.867 57.895 9.46 5.76 0.00 2.29
4995 5146 3.560105 AGAAGGCAAAGCTTCAGTTCTT 58.440 40.909 0.00 4.64 32.44 2.52
5060 5228 2.435586 CTGGCAGCTTCACTCCCG 60.436 66.667 0.00 0.00 0.00 5.14
5063 5231 1.744741 GAGGCTGGCAGCTTCACTC 60.745 63.158 37.30 29.41 45.45 3.51
5088 5276 3.181451 TGAAGATCATTGGCCGATTAGCT 60.181 43.478 1.37 0.00 0.00 3.32
5106 5294 1.530013 CCAAGCTTGGTGGGCTGAAG 61.530 60.000 33.46 7.43 43.43 3.02
5152 5340 1.544825 CCGCTCTGGTCCCAAGAAGA 61.545 60.000 0.00 0.00 0.00 2.87
5212 5403 1.003839 GAAGCCGACACATCCACCA 60.004 57.895 0.00 0.00 0.00 4.17
5276 5467 1.190178 ACGAGGTGTGGGGTAAGACC 61.190 60.000 0.00 0.00 37.60 3.85
5277 5468 0.683412 AACGAGGTGTGGGGTAAGAC 59.317 55.000 0.00 0.00 0.00 3.01
5282 5485 1.147600 GACAAACGAGGTGTGGGGT 59.852 57.895 0.00 0.00 0.00 4.95
5319 5526 4.785453 GGAACTGGAGGCCGCCTG 62.785 72.222 27.22 27.22 31.76 4.85
5354 5561 2.626780 CCGCCTCGATCGATGGCTA 61.627 63.158 34.65 12.62 44.09 3.93
5355 5562 3.983494 CCGCCTCGATCGATGGCT 61.983 66.667 34.65 0.00 44.09 4.75
5380 5587 1.115467 CTAGTCCAACCGCTCCATCT 58.885 55.000 0.00 0.00 0.00 2.90
5382 5589 1.522569 GCTAGTCCAACCGCTCCAT 59.477 57.895 0.00 0.00 0.00 3.41
5392 5599 2.021068 GCAGGCAGATCGCTAGTCCA 62.021 60.000 8.94 0.00 41.91 4.02
5433 5677 0.909610 CCTCCAAGAGTACCAGCCCA 60.910 60.000 0.00 0.00 0.00 5.36
5434 5678 0.617820 TCCTCCAAGAGTACCAGCCC 60.618 60.000 0.00 0.00 0.00 5.19
5435 5679 0.827368 CTCCTCCAAGAGTACCAGCC 59.173 60.000 0.00 0.00 0.00 4.85
5455 5699 0.319083 ACGCGACCTACAACATCCAA 59.681 50.000 15.93 0.00 0.00 3.53
5491 5735 2.762043 AGGAGCGGGAGGAGAAGC 60.762 66.667 0.00 0.00 0.00 3.86
5531 5778 2.015456 TCATCGGCTAGGACCATGAT 57.985 50.000 0.00 0.00 0.00 2.45
5532 5779 1.895798 GATCATCGGCTAGGACCATGA 59.104 52.381 0.00 0.00 0.00 3.07
5538 5785 1.620323 CACCATGATCATCGGCTAGGA 59.380 52.381 18.55 0.00 0.00 2.94
5542 5789 0.107066 TTGCACCATGATCATCGGCT 60.107 50.000 18.55 8.03 0.00 5.52
5568 5815 0.616395 TCACCATCGCCACCCTTAGA 60.616 55.000 0.00 0.00 0.00 2.10
5645 5963 1.270826 CACACTCCAAAGCTCTCTCGA 59.729 52.381 0.00 0.00 0.00 4.04
5664 5982 1.541118 TCCCACCATGGCCTCTTCA 60.541 57.895 13.04 0.00 35.79 3.02
5667 5985 1.542375 AACTCCCACCATGGCCTCT 60.542 57.895 13.04 0.00 35.79 3.69
5685 6003 0.321671 CCTTTCTCCTCTTCCGCACA 59.678 55.000 0.00 0.00 0.00 4.57
5690 6008 0.537653 CGGTCCCTTTCTCCTCTTCC 59.462 60.000 0.00 0.00 0.00 3.46
5725 6043 1.759445 ACTGCAGCCTCGTTCATAGAT 59.241 47.619 15.27 0.00 0.00 1.98
5736 6054 2.289694 CCCGCTATATAAACTGCAGCCT 60.290 50.000 15.27 3.13 0.00 4.58
5820 6142 2.250188 GCCAACATTAATGACACGCAC 58.750 47.619 22.16 1.35 0.00 5.34
5854 6176 3.948719 AACACCATGGCCGTCCGT 61.949 61.111 13.04 0.00 34.14 4.69
5861 6183 1.799994 GCATTCAAACAACACCATGGC 59.200 47.619 13.04 0.00 0.00 4.40
5864 6186 3.553508 GCTCTGCATTCAAACAACACCAT 60.554 43.478 0.00 0.00 0.00 3.55
5919 6241 1.595382 GCGCACCGGCAGAGATAAT 60.595 57.895 0.30 0.00 41.24 1.28
5920 6242 2.202878 GCGCACCGGCAGAGATAA 60.203 61.111 0.30 0.00 41.24 1.75
5955 6279 0.109504 GAGCAGACGTGACCTCTCAC 60.110 60.000 0.00 0.00 43.17 3.51
5959 6283 1.214062 CCAGAGCAGACGTGACCTC 59.786 63.158 0.00 0.00 0.00 3.85
6038 6362 3.062466 CTCCCTCACTCGTCCGCA 61.062 66.667 0.00 0.00 0.00 5.69
6043 6369 1.129058 ACCAAAACTCCCTCACTCGT 58.871 50.000 0.00 0.00 0.00 4.18
6285 6822 7.543947 AAGTTTCTCATTTTTCAAAAGCCTG 57.456 32.000 0.00 0.00 0.00 4.85
6325 6862 8.836413 GGATCCTAATGATACGAACAATTGAAA 58.164 33.333 13.59 0.00 32.41 2.69
6370 6907 6.225981 ACCTTGAAAATATGAAATGCCTCC 57.774 37.500 0.00 0.00 0.00 4.30
6469 7006 2.349532 GCTAGACACGCAACCAAGAAAC 60.350 50.000 0.00 0.00 0.00 2.78
6473 7010 0.792640 CAGCTAGACACGCAACCAAG 59.207 55.000 0.00 0.00 0.00 3.61
6476 7013 0.790814 GAACAGCTAGACACGCAACC 59.209 55.000 0.00 0.00 0.00 3.77
6479 7016 0.673985 AGTGAACAGCTAGACACGCA 59.326 50.000 0.00 0.00 38.15 5.24
6480 7017 1.063806 CAGTGAACAGCTAGACACGC 58.936 55.000 0.00 0.00 38.15 5.34
6481 7018 1.063806 GCAGTGAACAGCTAGACACG 58.936 55.000 0.00 7.03 38.15 4.49
6482 7019 2.154854 TGCAGTGAACAGCTAGACAC 57.845 50.000 0.00 7.85 0.00 3.67
6483 7020 2.908688 TTGCAGTGAACAGCTAGACA 57.091 45.000 0.00 0.00 0.00 3.41
6501 7039 8.050778 TGATGTCACGAGGCTTATTTTTATTT 57.949 30.769 0.00 0.00 0.00 1.40
6527 7065 1.202867 TGTTTGCCACCAGTATGCTGA 60.203 47.619 12.93 0.00 45.28 4.26
6684 7223 1.332195 CACCCTATCCTCTGCATCGA 58.668 55.000 0.00 0.00 0.00 3.59
6732 7271 0.389817 CTTCAAGGCCGTGATGTCGA 60.390 55.000 22.47 6.02 0.00 4.20
6737 7276 0.613260 TACAGCTTCAAGGCCGTGAT 59.387 50.000 22.47 9.50 0.00 3.06
6746 7285 3.198068 GCATCCGATTCTACAGCTTCAA 58.802 45.455 0.00 0.00 0.00 2.69
6752 7291 3.119291 GACACTGCATCCGATTCTACAG 58.881 50.000 0.00 0.00 0.00 2.74
6760 7299 0.458370 CATGTCGACACTGCATCCGA 60.458 55.000 22.71 0.00 0.00 4.55
6804 7343 9.720769 CCAGTCGGTTTTATGGAGTATTATAAT 57.279 33.333 2.97 2.97 34.60 1.28
6808 7347 5.662208 TCCCAGTCGGTTTTATGGAGTATTA 59.338 40.000 0.00 0.00 34.60 0.98
6809 7348 4.472108 TCCCAGTCGGTTTTATGGAGTATT 59.528 41.667 0.00 0.00 34.60 1.89
7003 7545 1.075601 ATCCCCAGAGCCAAAGTCAA 58.924 50.000 0.00 0.00 0.00 3.18
7012 7554 6.469782 TGAAATGAAATTAATCCCCAGAGC 57.530 37.500 0.00 0.00 33.67 4.09
7078 7691 6.149474 GGCTTCTTCACTGCTTAATTAGTTCA 59.851 38.462 0.00 0.00 0.00 3.18
7079 7692 6.149474 TGGCTTCTTCACTGCTTAATTAGTTC 59.851 38.462 0.00 0.00 0.00 3.01
7080 7693 6.003950 TGGCTTCTTCACTGCTTAATTAGTT 58.996 36.000 0.00 0.00 0.00 2.24
7081 7694 5.412904 GTGGCTTCTTCACTGCTTAATTAGT 59.587 40.000 0.00 0.00 32.78 2.24
7082 7695 5.446473 CGTGGCTTCTTCACTGCTTAATTAG 60.446 44.000 0.00 0.00 33.31 1.73
7083 7696 4.391830 CGTGGCTTCTTCACTGCTTAATTA 59.608 41.667 0.00 0.00 33.31 1.40
7084 7697 3.189287 CGTGGCTTCTTCACTGCTTAATT 59.811 43.478 0.00 0.00 33.31 1.40
7085 7698 2.744202 CGTGGCTTCTTCACTGCTTAAT 59.256 45.455 0.00 0.00 33.31 1.40
7086 7699 2.143122 CGTGGCTTCTTCACTGCTTAA 58.857 47.619 0.00 0.00 33.31 1.85
7087 7700 1.343142 TCGTGGCTTCTTCACTGCTTA 59.657 47.619 0.00 0.00 33.31 3.09
7088 7701 0.106708 TCGTGGCTTCTTCACTGCTT 59.893 50.000 0.00 0.00 33.31 3.91
7089 7702 0.106708 TTCGTGGCTTCTTCACTGCT 59.893 50.000 0.00 0.00 33.31 4.24
7090 7703 0.944386 TTTCGTGGCTTCTTCACTGC 59.056 50.000 0.00 0.00 33.31 4.40
7091 7704 1.532868 CCTTTCGTGGCTTCTTCACTG 59.467 52.381 0.00 0.00 33.31 3.66
7092 7705 1.884235 CCTTTCGTGGCTTCTTCACT 58.116 50.000 0.00 0.00 33.31 3.41
7102 7715 2.109126 GCTAGGCAGCCTTTCGTGG 61.109 63.158 22.26 0.00 42.37 4.94
7103 7716 3.490890 GCTAGGCAGCCTTTCGTG 58.509 61.111 22.26 6.50 42.37 4.35
7112 7725 0.908198 AGGAGTTCAAGGCTAGGCAG 59.092 55.000 19.70 10.64 0.00 4.85
7113 7726 0.905357 GAGGAGTTCAAGGCTAGGCA 59.095 55.000 19.70 0.00 0.00 4.75
7114 7727 0.179234 GGAGGAGTTCAAGGCTAGGC 59.821 60.000 8.55 8.55 0.00 3.93
7115 7728 0.461961 CGGAGGAGTTCAAGGCTAGG 59.538 60.000 0.00 0.00 0.00 3.02
7116 7729 0.179097 GCGGAGGAGTTCAAGGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
7117 7730 1.614241 GGCGGAGGAGTTCAAGGCTA 61.614 60.000 0.00 0.00 0.00 3.93
7118 7731 2.665603 GCGGAGGAGTTCAAGGCT 59.334 61.111 0.00 0.00 0.00 4.58
7119 7732 2.436824 GGCGGAGGAGTTCAAGGC 60.437 66.667 0.00 0.00 0.00 4.35
7120 7733 1.376037 GTGGCGGAGGAGTTCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
7121 7734 0.671781 CTGTGGCGGAGGAGTTCAAG 60.672 60.000 0.00 0.00 0.00 3.02
7122 7735 1.118965 TCTGTGGCGGAGGAGTTCAA 61.119 55.000 0.00 0.00 0.00 2.69
7139 7752 0.249489 GAATGGCGGACATAGCGTCT 60.249 55.000 0.00 0.00 44.70 4.18
7149 7762 4.802051 GCTGCTGGGAATGGCGGA 62.802 66.667 0.00 0.00 37.02 5.54
7202 7815 4.631377 CCGATGAGTTATTGAAGTGCTTGA 59.369 41.667 0.00 0.00 0.00 3.02
7212 7825 5.837437 AGCTAGAGAACCGATGAGTTATTG 58.163 41.667 0.00 0.00 0.00 1.90
7264 7877 3.181452 ACCAAATCCAAAGCAAAGCACAT 60.181 39.130 0.00 0.00 0.00 3.21
7276 7889 6.407865 CCAACCATATAATGCACCAAATCCAA 60.408 38.462 0.00 0.00 0.00 3.53
7283 7896 4.460263 GAGACCAACCATATAATGCACCA 58.540 43.478 0.00 0.00 0.00 4.17
7306 7919 2.677836 AGCATAGCAACCAACACGTATG 59.322 45.455 0.00 0.00 0.00 2.39
7365 7980 8.225777 GCCATCAGATTGAGAAAAATGAAAAAC 58.774 33.333 0.00 0.00 0.00 2.43
7370 7985 6.593268 TTGCCATCAGATTGAGAAAAATGA 57.407 33.333 0.00 0.00 0.00 2.57
7376 7991 6.183360 GGATCATTTTGCCATCAGATTGAGAA 60.183 38.462 0.00 0.00 0.00 2.87
7407 8022 7.225725 AGGATCATTTTGCCATTTCTCAAAAA 58.774 30.769 4.56 0.00 42.93 1.94
7409 8024 6.363167 AGGATCATTTTGCCATTTCTCAAA 57.637 33.333 0.00 0.00 0.00 2.69
7410 8025 6.014413 TCAAGGATCATTTTGCCATTTCTCAA 60.014 34.615 0.00 0.00 0.00 3.02
7411 8026 5.481122 TCAAGGATCATTTTGCCATTTCTCA 59.519 36.000 0.00 0.00 0.00 3.27
7412 8027 5.969423 TCAAGGATCATTTTGCCATTTCTC 58.031 37.500 0.00 0.00 0.00 2.87
7413 8028 6.168389 GTTCAAGGATCATTTTGCCATTTCT 58.832 36.000 0.00 0.00 0.00 2.52
7414 8029 5.933463 TGTTCAAGGATCATTTTGCCATTTC 59.067 36.000 0.00 0.00 0.00 2.17
7415 8030 5.867330 TGTTCAAGGATCATTTTGCCATTT 58.133 33.333 0.00 0.00 0.00 2.32
7416 8031 5.246656 TCTGTTCAAGGATCATTTTGCCATT 59.753 36.000 0.00 0.00 0.00 3.16
7417 8032 4.773674 TCTGTTCAAGGATCATTTTGCCAT 59.226 37.500 0.00 0.00 0.00 4.40
7418 8033 4.151121 TCTGTTCAAGGATCATTTTGCCA 58.849 39.130 0.00 0.00 0.00 4.92
7419 8034 4.219288 ACTCTGTTCAAGGATCATTTTGCC 59.781 41.667 0.00 0.00 0.00 4.52
7420 8035 5.382618 ACTCTGTTCAAGGATCATTTTGC 57.617 39.130 0.00 0.00 0.00 3.68
7421 8036 6.973843 TGAACTCTGTTCAAGGATCATTTTG 58.026 36.000 10.25 0.00 0.00 2.44
7422 8037 6.294397 GCTGAACTCTGTTCAAGGATCATTTT 60.294 38.462 13.12 0.00 0.00 1.82
7423 8038 5.182760 GCTGAACTCTGTTCAAGGATCATTT 59.817 40.000 13.12 0.00 0.00 2.32
7424 8039 4.699257 GCTGAACTCTGTTCAAGGATCATT 59.301 41.667 13.12 0.00 0.00 2.57
7425 8040 4.260170 GCTGAACTCTGTTCAAGGATCAT 58.740 43.478 13.12 0.00 0.00 2.45
7426 8041 3.071457 TGCTGAACTCTGTTCAAGGATCA 59.929 43.478 13.12 5.30 0.00 2.92
7427 8042 3.668447 TGCTGAACTCTGTTCAAGGATC 58.332 45.455 13.12 0.00 0.00 3.36
7428 8043 3.072184 ACTGCTGAACTCTGTTCAAGGAT 59.928 43.478 13.12 0.00 0.00 3.24
7429 8044 2.435805 ACTGCTGAACTCTGTTCAAGGA 59.564 45.455 13.12 8.47 0.00 3.36
7430 8045 2.805099 GACTGCTGAACTCTGTTCAAGG 59.195 50.000 13.12 8.99 0.00 3.61
7431 8046 3.726607 AGACTGCTGAACTCTGTTCAAG 58.273 45.455 13.12 11.06 0.00 3.02
7432 8047 3.827008 AGACTGCTGAACTCTGTTCAA 57.173 42.857 13.12 0.81 0.00 2.69
7433 8048 4.379918 CGATAGACTGCTGAACTCTGTTCA 60.380 45.833 11.83 11.83 39.76 3.18
7437 8052 2.223688 CCCGATAGACTGCTGAACTCTG 60.224 54.545 0.00 0.00 39.76 3.35
7444 8059 1.762522 ATGCCCCCGATAGACTGCTG 61.763 60.000 0.00 0.00 39.76 4.41
7447 8062 1.372683 CCATGCCCCCGATAGACTG 59.627 63.158 0.00 0.00 39.76 3.51
7448 8063 2.520536 GCCATGCCCCCGATAGACT 61.521 63.158 0.00 0.00 39.76 3.24
7509 8125 2.881513 TCGCTTTGTTATCTTGCACCAA 59.118 40.909 0.00 0.00 0.00 3.67
7532 8148 5.879777 AGTTGTTTGTTTTGAATCAAAGGGG 59.120 36.000 8.51 0.00 34.72 4.79
7555 8171 1.202687 TCCTTCAAGTGACCAGTGCAG 60.203 52.381 0.00 0.00 0.00 4.41
7660 8277 6.591834 AGCTACGGTATGCATTGATAAAGATC 59.408 38.462 3.54 0.00 0.00 2.75
7679 8296 5.228220 CGTCACAAGAAAGATTCTAGCTACG 59.772 44.000 0.00 0.00 39.61 3.51
7691 8308 3.931468 AGATCATCAGCGTCACAAGAAAG 59.069 43.478 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.