Multiple sequence alignment - TraesCS4A01G014700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G014700 chr4A 100.000 4233 0 0 1 4233 9452501 9448269 0.000000e+00 7817.0
1 TraesCS4A01G014700 chr4A 92.000 50 1 3 103 150 9452365 9452317 2.730000e-07 67.6
2 TraesCS4A01G014700 chr4A 92.000 50 1 3 137 185 9452399 9452352 2.730000e-07 67.6
3 TraesCS4A01G014700 chr4D 95.202 3668 148 14 588 4233 459319538 459323199 0.000000e+00 5773.0
4 TraesCS4A01G014700 chr4D 80.606 2145 348 46 937 3059 478311014 478313112 0.000000e+00 1594.0
5 TraesCS4A01G014700 chr4D 80.215 2143 361 38 938 3059 478320066 478322166 0.000000e+00 1550.0
6 TraesCS4A01G014700 chr4D 83.555 1654 224 22 1416 3059 478280152 478281767 0.000000e+00 1504.0
7 TraesCS4A01G014700 chr4D 83.655 1297 174 20 1643 2931 478431271 478432537 0.000000e+00 1186.0
8 TraesCS4A01G014700 chr4D 84.602 1143 144 19 1928 3059 478291726 478292847 0.000000e+00 1107.0
9 TraesCS4A01G014700 chr4D 79.289 816 119 33 3097 3881 478313185 478313981 3.750000e-145 525.0
10 TraesCS4A01G014700 chr4D 79.097 842 115 35 3065 3881 478281815 478282620 1.350000e-144 523.0
11 TraesCS4A01G014700 chr4D 82.136 543 68 18 3065 3602 478292900 478293418 5.020000e-119 438.0
12 TraesCS4A01G014700 chr4D 88.142 253 11 4 153 405 459319314 459319547 2.490000e-72 283.0
13 TraesCS4A01G014700 chr4D 95.333 150 7 0 1 150 459319197 459319346 5.470000e-59 239.0
14 TraesCS4A01G014700 chr4D 79.233 313 45 13 3293 3602 478314021 478314316 2.580000e-47 200.0
15 TraesCS4A01G014700 chr4B 90.971 3688 269 38 600 4233 574063333 574067010 0.000000e+00 4907.0
16 TraesCS4A01G014700 chr4B 81.879 1639 250 31 1432 3059 605005211 605006813 0.000000e+00 1338.0
17 TraesCS4A01G014700 chr4B 85.217 690 98 2 1886 2574 604957872 604958558 0.000000e+00 706.0
18 TraesCS4A01G014700 chr4B 78.385 842 125 34 3103 3917 604906632 604907443 1.060000e-135 494.0
19 TraesCS4A01G014700 chr4B 79.821 560 82 19 3065 3612 604995890 604996430 3.090000e-101 379.0
20 TraesCS4A01G014700 chr4B 97.333 150 3 1 1 150 574060807 574060955 1.950000e-63 254.0
21 TraesCS4A01G014700 chr4B 88.384 198 9 10 204 401 574063142 574063325 4.260000e-55 226.0
22 TraesCS4A01G014700 chr3A 94.737 95 5 0 408 502 733501783 733501877 9.480000e-32 148.0
23 TraesCS4A01G014700 chr7A 92.135 89 7 0 408 496 603703423 603703335 4.440000e-25 126.0
24 TraesCS4A01G014700 chr7A 92.135 89 7 0 408 496 603714401 603714313 4.440000e-25 126.0
25 TraesCS4A01G014700 chr7A 92.045 88 7 0 409 496 603719893 603719806 1.600000e-24 124.0
26 TraesCS4A01G014700 chr2A 100.000 31 0 0 408 438 11647210 11647240 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G014700 chr4A 9448269 9452501 4232 True 2650.733333 7817 94.666667 1 4233 3 chr4A.!!$R1 4232
1 TraesCS4A01G014700 chr4D 459319197 459323199 4002 False 2098.333333 5773 92.892333 1 4233 3 chr4D.!!$F3 4232
2 TraesCS4A01G014700 chr4D 478320066 478322166 2100 False 1550.000000 1550 80.215000 938 3059 1 chr4D.!!$F1 2121
3 TraesCS4A01G014700 chr4D 478431271 478432537 1266 False 1186.000000 1186 83.655000 1643 2931 1 chr4D.!!$F2 1288
4 TraesCS4A01G014700 chr4D 478280152 478282620 2468 False 1013.500000 1504 81.326000 1416 3881 2 chr4D.!!$F4 2465
5 TraesCS4A01G014700 chr4D 478311014 478314316 3302 False 773.000000 1594 79.709333 937 3881 3 chr4D.!!$F6 2944
6 TraesCS4A01G014700 chr4D 478291726 478293418 1692 False 772.500000 1107 83.369000 1928 3602 2 chr4D.!!$F5 1674
7 TraesCS4A01G014700 chr4B 574060807 574067010 6203 False 1795.666667 4907 92.229333 1 4233 3 chr4B.!!$F5 4232
8 TraesCS4A01G014700 chr4B 605005211 605006813 1602 False 1338.000000 1338 81.879000 1432 3059 1 chr4B.!!$F4 1627
9 TraesCS4A01G014700 chr4B 604957872 604958558 686 False 706.000000 706 85.217000 1886 2574 1 chr4B.!!$F2 688
10 TraesCS4A01G014700 chr4B 604906632 604907443 811 False 494.000000 494 78.385000 3103 3917 1 chr4B.!!$F1 814
11 TraesCS4A01G014700 chr4B 604995890 604996430 540 False 379.000000 379 79.821000 3065 3612 1 chr4B.!!$F3 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 2640 0.176680 CAGCATCGTGTAGAGGGCTT 59.823 55.0 0.00 0.0 40.18 4.35 F
1254 3428 0.321653 GCATTCACTGTCCCGGAGTT 60.322 55.0 0.73 0.0 0.00 3.01 F
1434 3611 0.748367 TCCTCACGTCCTCGGATCTG 60.748 60.0 0.00 0.0 41.85 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 4354 2.411701 TCGACGGCGATCATCCAC 59.588 61.111 10.67 0.00 42.51 4.02 R
3195 5442 1.927487 ACCTTCCATTGCTGCATCAA 58.073 45.000 5.30 5.30 0.00 2.57 R
3345 5600 3.561120 TTCGAAGGGCGGCCAACAT 62.561 57.895 31.59 13.18 41.33 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 9.675464 AATGATGGCAGACAAAATATGATTTTT 57.325 25.926 0.00 0.00 0.00 1.94
144 145 9.585099 TGATGGCAGACAAAATATGATTTTTAC 57.415 29.630 0.00 0.00 0.00 2.01
145 146 9.585099 GATGGCAGACAAAATATGATTTTTACA 57.415 29.630 0.00 0.00 0.00 2.41
160 161 8.164058 TGATTTTTACATATCGAATGATGGCA 57.836 30.769 12.53 0.00 35.99 4.92
161 162 8.291740 TGATTTTTACATATCGAATGATGGCAG 58.708 33.333 12.53 0.00 35.99 4.85
162 163 7.800155 TTTTTACATATCGAATGATGGCAGA 57.200 32.000 12.53 0.00 35.99 4.26
163 164 6.785488 TTTACATATCGAATGATGGCAGAC 57.215 37.500 12.53 0.00 35.99 3.51
164 165 4.341366 ACATATCGAATGATGGCAGACA 57.659 40.909 12.53 0.00 35.99 3.41
165 166 4.707105 ACATATCGAATGATGGCAGACAA 58.293 39.130 12.53 0.00 35.99 3.18
166 167 5.125356 ACATATCGAATGATGGCAGACAAA 58.875 37.500 12.53 0.00 35.99 2.83
167 168 5.589855 ACATATCGAATGATGGCAGACAAAA 59.410 36.000 12.53 0.00 35.99 2.44
168 169 6.263842 ACATATCGAATGATGGCAGACAAAAT 59.736 34.615 12.53 0.00 35.99 1.82
169 170 7.445096 ACATATCGAATGATGGCAGACAAAATA 59.555 33.333 12.53 0.00 35.99 1.40
170 171 6.889301 ATCGAATGATGGCAGACAAAATAT 57.111 33.333 0.00 0.00 32.21 1.28
171 172 6.063640 TCGAATGATGGCAGACAAAATATG 57.936 37.500 0.00 0.00 0.00 1.78
172 173 5.821995 TCGAATGATGGCAGACAAAATATGA 59.178 36.000 0.00 0.00 0.00 2.15
173 174 6.487668 TCGAATGATGGCAGACAAAATATGAT 59.512 34.615 0.00 0.00 0.00 2.45
174 175 7.013559 TCGAATGATGGCAGACAAAATATGATT 59.986 33.333 0.00 0.00 0.00 2.57
175 176 7.650504 CGAATGATGGCAGACAAAATATGATTT 59.349 33.333 0.00 0.00 0.00 2.17
176 177 9.321562 GAATGATGGCAGACAAAATATGATTTT 57.678 29.630 0.00 0.00 0.00 1.82
177 178 9.675464 AATGATGGCAGACAAAATATGATTTTT 57.325 25.926 0.00 0.00 0.00 1.94
257 2425 2.355513 GGTGCTGACTCCATCAATCTGT 60.356 50.000 0.00 0.00 36.69 3.41
258 2426 2.676839 GTGCTGACTCCATCAATCTGTG 59.323 50.000 0.00 0.00 36.69 3.66
305 2473 1.366111 CTCGTACCCCAATGCCAACG 61.366 60.000 0.00 0.00 0.00 4.10
345 2513 0.252467 ACAGAGGAGGAAGAGGGTGG 60.252 60.000 0.00 0.00 0.00 4.61
346 2514 1.306568 AGAGGAGGAAGAGGGTGGC 60.307 63.158 0.00 0.00 0.00 5.01
347 2515 1.613630 GAGGAGGAAGAGGGTGGCA 60.614 63.158 0.00 0.00 0.00 4.92
348 2516 1.614824 AGGAGGAAGAGGGTGGCAG 60.615 63.158 0.00 0.00 0.00 4.85
349 2517 2.674220 GGAGGAAGAGGGTGGCAGG 61.674 68.421 0.00 0.00 0.00 4.85
350 2518 3.334054 AGGAAGAGGGTGGCAGGC 61.334 66.667 0.00 0.00 0.00 4.85
351 2519 3.334054 GGAAGAGGGTGGCAGGCT 61.334 66.667 0.00 0.00 0.00 4.58
352 2520 2.045536 GAAGAGGGTGGCAGGCTG 60.046 66.667 10.94 10.94 0.00 4.85
425 2593 7.591006 TTTTAAGGACAATGCTAGACTTACG 57.409 36.000 0.00 0.00 0.00 3.18
426 2594 4.803098 AAGGACAATGCTAGACTTACGT 57.197 40.909 0.00 0.00 0.00 3.57
427 2595 5.909621 AAGGACAATGCTAGACTTACGTA 57.090 39.130 0.00 0.00 0.00 3.57
428 2596 5.909621 AGGACAATGCTAGACTTACGTAA 57.090 39.130 7.94 7.94 0.00 3.18
429 2597 6.276832 AGGACAATGCTAGACTTACGTAAA 57.723 37.500 9.68 0.00 0.00 2.01
430 2598 6.694447 AGGACAATGCTAGACTTACGTAAAA 58.306 36.000 9.68 0.00 0.00 1.52
431 2599 7.328737 AGGACAATGCTAGACTTACGTAAAAT 58.671 34.615 9.68 0.22 0.00 1.82
432 2600 7.491696 AGGACAATGCTAGACTTACGTAAAATC 59.508 37.037 9.68 9.89 0.00 2.17
433 2601 7.491696 GGACAATGCTAGACTTACGTAAAATCT 59.508 37.037 19.96 19.96 0.00 2.40
434 2602 9.512435 GACAATGCTAGACTTACGTAAAATCTA 57.488 33.333 20.03 20.03 0.00 1.98
449 2617 9.793252 ACGTAAAATCTATTATGTGTTCTACGT 57.207 29.630 0.00 0.00 34.53 3.57
455 2623 9.745880 AATCTATTATGTGTTCTACGTAACCAG 57.254 33.333 0.00 0.00 42.04 4.00
456 2624 7.198390 TCTATTATGTGTTCTACGTAACCAGC 58.802 38.462 0.00 0.00 42.04 4.85
457 2625 3.671008 ATGTGTTCTACGTAACCAGCA 57.329 42.857 0.00 0.00 0.00 4.41
458 2626 3.671008 TGTGTTCTACGTAACCAGCAT 57.329 42.857 0.00 0.00 0.00 3.79
459 2627 3.581755 TGTGTTCTACGTAACCAGCATC 58.418 45.455 0.00 0.00 0.00 3.91
460 2628 2.597305 GTGTTCTACGTAACCAGCATCG 59.403 50.000 0.00 0.00 0.00 3.84
461 2629 2.229543 TGTTCTACGTAACCAGCATCGT 59.770 45.455 0.00 0.00 39.74 3.73
462 2630 2.554806 TCTACGTAACCAGCATCGTG 57.445 50.000 0.00 0.00 37.66 4.35
463 2631 1.814394 TCTACGTAACCAGCATCGTGT 59.186 47.619 0.00 0.00 37.66 4.49
464 2632 3.009026 TCTACGTAACCAGCATCGTGTA 58.991 45.455 0.00 0.00 37.66 2.90
465 2633 2.273370 ACGTAACCAGCATCGTGTAG 57.727 50.000 0.00 0.00 35.24 2.74
466 2634 1.814394 ACGTAACCAGCATCGTGTAGA 59.186 47.619 0.00 0.00 35.24 2.59
467 2635 2.159421 ACGTAACCAGCATCGTGTAGAG 60.159 50.000 0.00 0.00 35.24 2.43
468 2636 2.794981 CGTAACCAGCATCGTGTAGAGG 60.795 54.545 0.00 0.00 0.00 3.69
469 2637 0.537188 AACCAGCATCGTGTAGAGGG 59.463 55.000 0.00 0.00 0.00 4.30
470 2638 1.227380 CCAGCATCGTGTAGAGGGC 60.227 63.158 0.00 0.00 34.48 5.19
471 2639 1.680522 CCAGCATCGTGTAGAGGGCT 61.681 60.000 0.00 0.00 42.04 5.19
472 2640 0.176680 CAGCATCGTGTAGAGGGCTT 59.823 55.000 0.00 0.00 40.18 4.35
473 2641 1.409064 CAGCATCGTGTAGAGGGCTTA 59.591 52.381 0.00 0.00 40.18 3.09
474 2642 2.036475 CAGCATCGTGTAGAGGGCTTAT 59.964 50.000 0.00 0.00 40.18 1.73
475 2643 2.700897 AGCATCGTGTAGAGGGCTTATT 59.299 45.455 0.00 0.00 39.47 1.40
476 2644 2.802816 GCATCGTGTAGAGGGCTTATTG 59.197 50.000 0.00 0.00 32.39 1.90
477 2645 3.393800 CATCGTGTAGAGGGCTTATTGG 58.606 50.000 0.00 0.00 0.00 3.16
478 2646 2.742348 TCGTGTAGAGGGCTTATTGGA 58.258 47.619 0.00 0.00 0.00 3.53
479 2647 3.305720 TCGTGTAGAGGGCTTATTGGAT 58.694 45.455 0.00 0.00 0.00 3.41
480 2648 4.476297 TCGTGTAGAGGGCTTATTGGATA 58.524 43.478 0.00 0.00 0.00 2.59
481 2649 4.523173 TCGTGTAGAGGGCTTATTGGATAG 59.477 45.833 0.00 0.00 0.00 2.08
482 2650 4.523173 CGTGTAGAGGGCTTATTGGATAGA 59.477 45.833 0.00 0.00 0.00 1.98
483 2651 5.186021 CGTGTAGAGGGCTTATTGGATAGAT 59.814 44.000 0.00 0.00 0.00 1.98
484 2652 6.295349 CGTGTAGAGGGCTTATTGGATAGATT 60.295 42.308 0.00 0.00 0.00 2.40
485 2653 7.093902 CGTGTAGAGGGCTTATTGGATAGATTA 60.094 40.741 0.00 0.00 0.00 1.75
486 2654 8.254508 GTGTAGAGGGCTTATTGGATAGATTAG 58.745 40.741 0.00 0.00 0.00 1.73
487 2655 7.956315 TGTAGAGGGCTTATTGGATAGATTAGT 59.044 37.037 0.00 0.00 0.00 2.24
488 2656 7.251321 AGAGGGCTTATTGGATAGATTAGTG 57.749 40.000 0.00 0.00 0.00 2.74
489 2657 7.019388 AGAGGGCTTATTGGATAGATTAGTGA 58.981 38.462 0.00 0.00 0.00 3.41
490 2658 7.180051 AGAGGGCTTATTGGATAGATTAGTGAG 59.820 40.741 0.00 0.00 0.00 3.51
491 2659 6.214412 AGGGCTTATTGGATAGATTAGTGAGG 59.786 42.308 0.00 0.00 0.00 3.86
492 2660 6.213600 GGGCTTATTGGATAGATTAGTGAGGA 59.786 42.308 0.00 0.00 0.00 3.71
493 2661 7.327214 GGCTTATTGGATAGATTAGTGAGGAG 58.673 42.308 0.00 0.00 0.00 3.69
494 2662 7.327214 GCTTATTGGATAGATTAGTGAGGAGG 58.673 42.308 0.00 0.00 0.00 4.30
495 2663 7.580495 GCTTATTGGATAGATTAGTGAGGAGGG 60.580 44.444 0.00 0.00 0.00 4.30
496 2664 4.133526 TGGATAGATTAGTGAGGAGGGG 57.866 50.000 0.00 0.00 0.00 4.79
497 2665 2.835156 GGATAGATTAGTGAGGAGGGGC 59.165 54.545 0.00 0.00 0.00 5.80
498 2666 2.400467 TAGATTAGTGAGGAGGGGCC 57.600 55.000 0.00 0.00 0.00 5.80
499 2667 0.400670 AGATTAGTGAGGAGGGGCCC 60.401 60.000 17.12 17.12 37.37 5.80
500 2668 0.694444 GATTAGTGAGGAGGGGCCCA 60.694 60.000 27.72 0.00 37.37 5.36
501 2669 0.988678 ATTAGTGAGGAGGGGCCCAC 60.989 60.000 27.72 19.96 37.81 4.61
502 2670 3.635869 TAGTGAGGAGGGGCCCACC 62.636 68.421 29.86 29.86 38.10 4.61
522 2690 2.500352 CCCGTTAAAATCAGGGGGC 58.500 57.895 0.00 0.00 40.18 5.80
523 2691 1.381165 CCCGTTAAAATCAGGGGGCG 61.381 60.000 0.00 0.00 40.18 6.13
524 2692 0.393267 CCGTTAAAATCAGGGGGCGA 60.393 55.000 0.00 0.00 0.00 5.54
525 2693 1.675552 CGTTAAAATCAGGGGGCGAT 58.324 50.000 0.00 0.00 0.00 4.58
526 2694 2.485835 CCGTTAAAATCAGGGGGCGATA 60.486 50.000 0.00 0.00 0.00 2.92
527 2695 2.806244 CGTTAAAATCAGGGGGCGATAG 59.194 50.000 0.00 0.00 0.00 2.08
559 2727 8.990163 AGTTTGGAATTTTAAGTAGGTCTTCA 57.010 30.769 0.00 0.00 37.56 3.02
560 2728 9.588096 AGTTTGGAATTTTAAGTAGGTCTTCAT 57.412 29.630 0.00 0.00 37.56 2.57
563 2731 8.732746 TGGAATTTTAAGTAGGTCTTCATAGC 57.267 34.615 0.00 0.00 37.56 2.97
564 2732 7.773690 TGGAATTTTAAGTAGGTCTTCATAGCC 59.226 37.037 0.00 0.00 37.56 3.93
565 2733 7.993758 GGAATTTTAAGTAGGTCTTCATAGCCT 59.006 37.037 0.00 0.00 37.56 4.58
566 2734 8.966069 AATTTTAAGTAGGTCTTCATAGCCTC 57.034 34.615 0.00 0.00 37.56 4.70
567 2735 7.735326 TTTTAAGTAGGTCTTCATAGCCTCT 57.265 36.000 0.00 0.00 37.56 3.69
568 2736 7.735326 TTTAAGTAGGTCTTCATAGCCTCTT 57.265 36.000 0.00 0.00 37.56 2.85
569 2737 5.862678 AAGTAGGTCTTCATAGCCTCTTC 57.137 43.478 0.00 0.00 32.48 2.87
570 2738 3.886505 AGTAGGTCTTCATAGCCTCTTCG 59.113 47.826 0.00 0.00 32.48 3.79
571 2739 2.741145 AGGTCTTCATAGCCTCTTCGT 58.259 47.619 0.00 0.00 0.00 3.85
572 2740 3.899726 AGGTCTTCATAGCCTCTTCGTA 58.100 45.455 0.00 0.00 0.00 3.43
573 2741 3.886505 AGGTCTTCATAGCCTCTTCGTAG 59.113 47.826 0.00 0.00 0.00 3.51
574 2742 3.004944 GGTCTTCATAGCCTCTTCGTAGG 59.995 52.174 0.00 0.00 39.87 3.18
575 2743 3.633065 GTCTTCATAGCCTCTTCGTAGGT 59.367 47.826 0.00 0.00 39.02 3.08
576 2744 3.632604 TCTTCATAGCCTCTTCGTAGGTG 59.367 47.826 0.00 0.00 39.02 4.00
577 2745 3.014304 TCATAGCCTCTTCGTAGGTGT 57.986 47.619 0.00 0.00 39.02 4.16
578 2746 4.160642 TCATAGCCTCTTCGTAGGTGTA 57.839 45.455 0.00 0.00 39.02 2.90
579 2747 4.135306 TCATAGCCTCTTCGTAGGTGTAG 58.865 47.826 0.00 0.00 39.02 2.74
580 2748 1.765230 AGCCTCTTCGTAGGTGTAGG 58.235 55.000 0.00 0.00 39.02 3.18
581 2749 1.284198 AGCCTCTTCGTAGGTGTAGGA 59.716 52.381 0.00 0.00 39.02 2.94
582 2750 2.091775 AGCCTCTTCGTAGGTGTAGGAT 60.092 50.000 0.00 0.00 39.02 3.24
583 2751 2.694109 GCCTCTTCGTAGGTGTAGGATT 59.306 50.000 0.00 0.00 39.02 3.01
584 2752 3.887716 GCCTCTTCGTAGGTGTAGGATTA 59.112 47.826 0.00 0.00 39.02 1.75
585 2753 4.523558 GCCTCTTCGTAGGTGTAGGATTAT 59.476 45.833 0.00 0.00 39.02 1.28
586 2754 5.335819 GCCTCTTCGTAGGTGTAGGATTATC 60.336 48.000 0.00 0.00 39.02 1.75
627 2795 3.345714 GCGAGATTTTCTTATGCGTGTG 58.654 45.455 0.00 0.00 0.00 3.82
732 2901 8.023706 GGAAGGTTTGTGTTTTCTCTCATTATC 58.976 37.037 0.00 0.00 0.00 1.75
734 2903 8.641498 AGGTTTGTGTTTTCTCTCATTATCAT 57.359 30.769 0.00 0.00 0.00 2.45
766 2936 3.896648 ACTTGTGCCGTTGTATTTCAG 57.103 42.857 0.00 0.00 0.00 3.02
771 2941 0.679960 GCCGTTGTATTTCAGGGGCT 60.680 55.000 0.00 0.00 40.58 5.19
775 2945 2.093128 CGTTGTATTTCAGGGGCTAGGT 60.093 50.000 0.00 0.00 0.00 3.08
847 3018 3.620488 ACAAGGAGCAAGTGTGAAGAAA 58.380 40.909 0.00 0.00 0.00 2.52
869 3040 5.990120 AGATGCAAAGCCAGTTTATTTCT 57.010 34.783 0.00 0.00 0.00 2.52
904 3077 2.837291 CTCCCCTCTCCCTCAGCG 60.837 72.222 0.00 0.00 0.00 5.18
957 3130 1.780919 TCCCACTCCAGATCCGATCTA 59.219 52.381 10.65 0.00 37.58 1.98
975 3148 4.194678 TCTAAACCCTGATAGATCCCGT 57.805 45.455 0.00 0.00 0.00 5.28
1022 3196 2.000447 GCTCGATTTCGGCAGTAAAGT 59.000 47.619 0.00 0.00 40.29 2.66
1045 3219 2.481854 CCATGAGCAAGATCTTCTCCG 58.518 52.381 21.84 16.13 0.00 4.63
1062 3236 4.408821 GTGACATGCGAGCCCCCA 62.409 66.667 0.00 0.00 0.00 4.96
1245 3419 1.977854 TCCTACCTGTGCATTCACTGT 59.022 47.619 0.00 0.00 43.49 3.55
1254 3428 0.321653 GCATTCACTGTCCCGGAGTT 60.322 55.000 0.73 0.00 0.00 3.01
1299 3473 3.955291 CATCGTCTGCTCGGAGAAT 57.045 52.632 9.69 0.00 34.09 2.40
1434 3611 0.748367 TCCTCACGTCCTCGGATCTG 60.748 60.000 0.00 0.00 41.85 2.90
1752 3930 2.485795 GGCTGGCAACACGGACAAA 61.486 57.895 0.00 0.00 46.17 2.83
2172 4354 6.761731 TCCAAATTTTGCAACATAAAGACG 57.238 33.333 0.00 0.00 0.00 4.18
2187 4369 1.944676 GACGTGGATGATCGCCGTC 60.945 63.158 16.01 16.01 40.71 4.79
2440 4625 8.038944 GGAACATGTTTTAGTGGTGTATCTCTA 58.961 37.037 13.36 0.00 0.00 2.43
2470 4655 3.515901 CTGCTCTAGGTAGGGTTCACTTT 59.484 47.826 0.00 0.00 0.00 2.66
2557 4745 8.051909 GCAAATCAATTAATAAAGACACATGCG 58.948 33.333 0.00 0.00 0.00 4.73
2619 4807 3.578282 TGTTTGCTGATCTAGAGTCCACA 59.422 43.478 0.00 0.00 0.00 4.17
2623 4811 3.133542 TGCTGATCTAGAGTCCACATTGG 59.866 47.826 0.00 0.00 39.43 3.16
2624 4812 3.133721 GCTGATCTAGAGTCCACATTGGT 59.866 47.826 0.00 0.00 39.03 3.67
2626 4814 5.738909 CTGATCTAGAGTCCACATTGGTTT 58.261 41.667 0.00 0.00 39.03 3.27
2670 4858 4.118410 TGCATTTTGTTCACATGTGGTTC 58.882 39.130 25.16 15.43 0.00 3.62
2794 4985 5.640147 ACCTCTGAAATATTTGGGTGTTCA 58.360 37.500 5.17 0.00 0.00 3.18
2876 5067 4.305989 TGCAGCCAAACAGACTAAAAAG 57.694 40.909 0.00 0.00 0.00 2.27
2955 5151 3.750130 AGATGTCATTGTGAACTCTGTGC 59.250 43.478 0.00 0.00 0.00 4.57
3045 5243 2.423185 CAGTTGCAGACTTTTGTGACCA 59.577 45.455 0.00 0.00 36.10 4.02
3191 5438 7.147958 TCTGATGGTCATTTATCCCATGTTA 57.852 36.000 0.00 0.00 39.06 2.41
3195 5442 8.226810 TGATGGTCATTTATCCCATGTTATTCT 58.773 33.333 0.00 0.00 39.06 2.40
3265 5512 4.739046 CAAAGTCATTTTGCTCTCGAGT 57.261 40.909 13.13 0.00 39.71 4.18
3266 5513 5.100751 CAAAGTCATTTTGCTCTCGAGTT 57.899 39.130 13.13 0.00 39.71 3.01
3304 5552 0.540597 AAGCCAACTCAAGCTTCCCC 60.541 55.000 0.00 0.00 46.11 4.81
3345 5600 3.985019 TTTTATGGTGGACCTCGCTTA 57.015 42.857 0.00 0.00 36.82 3.09
3359 5614 2.052104 GCTTATGTTGGCCGCCCTT 61.052 57.895 7.03 0.00 0.00 3.95
3401 5658 5.878116 CCATTTTATTCACCGGACTGTTCTA 59.122 40.000 9.46 0.00 0.00 2.10
3411 5668 4.274950 ACCGGACTGTTCTATGTTTTGTTG 59.725 41.667 9.46 0.00 0.00 3.33
3450 5708 9.562226 AGCTACCTACCATTCCAGTATTATTAT 57.438 33.333 0.00 0.00 0.00 1.28
3514 5774 7.451255 TGGTTAATTGATCTCTCCAATTTGTGT 59.549 33.333 0.00 0.00 42.31 3.72
3532 5792 2.032290 GTGTACCTTGTTTGTCGGCTTC 60.032 50.000 0.00 0.00 0.00 3.86
3564 5824 7.060383 TGAAAGCCAAATAGTGAAAAATGGA 57.940 32.000 0.00 0.00 0.00 3.41
3694 5955 5.398236 ACATGCTTCTCTCTTATAGCCCTA 58.602 41.667 0.00 0.00 32.73 3.53
3785 6069 3.829601 GTCAATGTGTACCCCCAATCAAA 59.170 43.478 0.00 0.00 0.00 2.69
3788 6072 3.534357 TGTGTACCCCCAATCAAATGT 57.466 42.857 0.00 0.00 0.00 2.71
3824 6109 9.374838 ACTTGCCAATGATGAATAAGATTTTTC 57.625 29.630 0.00 0.00 0.00 2.29
3854 6158 3.259123 GGTTGTGGAGGCTTGAAAATGAT 59.741 43.478 0.00 0.00 0.00 2.45
3922 6229 5.398603 TTCTTTCAAGTTGAGGCAAACAA 57.601 34.783 5.56 0.00 32.21 2.83
3924 6231 5.591099 TCTTTCAAGTTGAGGCAAACAATC 58.409 37.500 5.56 0.00 32.21 2.67
4013 6364 3.362831 CACAATGAACAAAGCTTCATCGC 59.637 43.478 0.00 0.00 39.51 4.58
4065 6420 5.048846 AGGTTGTCAAGGTTCATAACACT 57.951 39.130 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 5.467035 TGTCTGCCATCATTCGATATGTA 57.533 39.130 0.00 0.00 0.00 2.29
143 144 4.341366 TGTCTGCCATCATTCGATATGT 57.659 40.909 0.00 0.00 0.00 2.29
144 145 5.678132 TTTGTCTGCCATCATTCGATATG 57.322 39.130 0.00 0.00 0.00 1.78
145 146 6.889301 ATTTTGTCTGCCATCATTCGATAT 57.111 33.333 0.00 0.00 0.00 1.63
146 147 7.661027 TCATATTTTGTCTGCCATCATTCGATA 59.339 33.333 0.00 0.00 0.00 2.92
147 148 6.487668 TCATATTTTGTCTGCCATCATTCGAT 59.512 34.615 0.00 0.00 0.00 3.59
148 149 5.821995 TCATATTTTGTCTGCCATCATTCGA 59.178 36.000 0.00 0.00 0.00 3.71
149 150 6.063640 TCATATTTTGTCTGCCATCATTCG 57.936 37.500 0.00 0.00 0.00 3.34
150 151 8.882415 AAATCATATTTTGTCTGCCATCATTC 57.118 30.769 0.00 0.00 0.00 2.67
151 152 9.675464 AAAAATCATATTTTGTCTGCCATCATT 57.325 25.926 0.00 0.00 31.55 2.57
153 154 9.585099 GTAAAAATCATATTTTGTCTGCCATCA 57.415 29.630 0.00 0.00 34.51 3.07
154 155 9.585099 TGTAAAAATCATATTTTGTCTGCCATC 57.415 29.630 0.00 0.00 34.51 3.51
166 167 9.706691 ACGACGAGGATATGTAAAAATCATATT 57.293 29.630 0.00 0.00 38.22 1.28
167 168 9.140286 CACGACGAGGATATGTAAAAATCATAT 57.860 33.333 0.00 0.00 40.00 1.78
168 169 7.597369 CCACGACGAGGATATGTAAAAATCATA 59.403 37.037 5.25 0.00 33.26 2.15
169 170 6.423905 CCACGACGAGGATATGTAAAAATCAT 59.576 38.462 5.25 0.00 0.00 2.45
170 171 5.751509 CCACGACGAGGATATGTAAAAATCA 59.248 40.000 5.25 0.00 0.00 2.57
171 172 5.333111 GCCACGACGAGGATATGTAAAAATC 60.333 44.000 15.98 0.00 0.00 2.17
172 173 4.510340 GCCACGACGAGGATATGTAAAAAT 59.490 41.667 15.98 0.00 0.00 1.82
173 174 3.866910 GCCACGACGAGGATATGTAAAAA 59.133 43.478 15.98 0.00 0.00 1.94
174 175 3.450578 GCCACGACGAGGATATGTAAAA 58.549 45.455 15.98 0.00 0.00 1.52
175 176 2.542205 CGCCACGACGAGGATATGTAAA 60.542 50.000 15.98 0.00 34.06 2.01
176 177 1.002142 CGCCACGACGAGGATATGTAA 60.002 52.381 15.98 0.00 34.06 2.41
177 178 0.589708 CGCCACGACGAGGATATGTA 59.410 55.000 15.98 0.00 34.06 2.29
315 2483 2.142357 CTCCTCTGTTGTCGTCGGCA 62.142 60.000 0.00 0.00 0.00 5.69
400 2568 8.025243 CGTAAGTCTAGCATTGTCCTTAAAAA 57.975 34.615 0.00 0.00 0.00 1.94
401 2569 7.591006 CGTAAGTCTAGCATTGTCCTTAAAA 57.409 36.000 0.00 0.00 0.00 1.52
423 2591 9.793252 ACGTAGAACACATAATAGATTTTACGT 57.207 29.630 0.00 0.00 37.83 3.57
429 2597 9.745880 CTGGTTACGTAGAACACATAATAGATT 57.254 33.333 3.76 0.00 0.00 2.40
430 2598 7.866393 GCTGGTTACGTAGAACACATAATAGAT 59.134 37.037 3.76 0.00 0.00 1.98
431 2599 7.148035 TGCTGGTTACGTAGAACACATAATAGA 60.148 37.037 3.76 0.00 0.00 1.98
432 2600 6.976349 TGCTGGTTACGTAGAACACATAATAG 59.024 38.462 3.76 0.00 0.00 1.73
433 2601 6.865411 TGCTGGTTACGTAGAACACATAATA 58.135 36.000 3.76 0.00 0.00 0.98
434 2602 5.726397 TGCTGGTTACGTAGAACACATAAT 58.274 37.500 3.76 0.00 0.00 1.28
435 2603 5.136816 TGCTGGTTACGTAGAACACATAA 57.863 39.130 3.76 0.00 0.00 1.90
436 2604 4.787260 TGCTGGTTACGTAGAACACATA 57.213 40.909 3.76 0.00 0.00 2.29
437 2605 3.671008 TGCTGGTTACGTAGAACACAT 57.329 42.857 3.76 0.00 0.00 3.21
438 2606 3.581755 GATGCTGGTTACGTAGAACACA 58.418 45.455 3.76 0.00 0.00 3.72
439 2607 2.597305 CGATGCTGGTTACGTAGAACAC 59.403 50.000 3.76 0.00 0.00 3.32
440 2608 2.229543 ACGATGCTGGTTACGTAGAACA 59.770 45.455 3.76 0.39 37.22 3.18
441 2609 2.597305 CACGATGCTGGTTACGTAGAAC 59.403 50.000 0.00 0.00 37.22 3.01
442 2610 2.229543 ACACGATGCTGGTTACGTAGAA 59.770 45.455 0.00 0.00 37.22 2.10
443 2611 1.814394 ACACGATGCTGGTTACGTAGA 59.186 47.619 0.00 0.00 37.22 2.59
444 2612 2.273370 ACACGATGCTGGTTACGTAG 57.727 50.000 0.00 0.00 37.22 3.51
445 2613 3.009026 TCTACACGATGCTGGTTACGTA 58.991 45.455 0.00 0.00 37.22 3.57
446 2614 1.814394 TCTACACGATGCTGGTTACGT 59.186 47.619 0.00 0.00 39.53 3.57
447 2615 2.451132 CTCTACACGATGCTGGTTACG 58.549 52.381 0.00 0.00 0.00 3.18
448 2616 2.481449 CCCTCTACACGATGCTGGTTAC 60.481 54.545 0.00 0.00 0.00 2.50
449 2617 1.754803 CCCTCTACACGATGCTGGTTA 59.245 52.381 0.00 0.00 0.00 2.85
450 2618 0.537188 CCCTCTACACGATGCTGGTT 59.463 55.000 0.00 0.00 0.00 3.67
451 2619 1.961180 GCCCTCTACACGATGCTGGT 61.961 60.000 0.00 0.00 0.00 4.00
452 2620 1.227380 GCCCTCTACACGATGCTGG 60.227 63.158 0.00 0.00 0.00 4.85
453 2621 0.176680 AAGCCCTCTACACGATGCTG 59.823 55.000 0.00 0.00 32.08 4.41
454 2622 1.776662 TAAGCCCTCTACACGATGCT 58.223 50.000 0.00 0.00 32.78 3.79
455 2623 2.802816 CAATAAGCCCTCTACACGATGC 59.197 50.000 0.00 0.00 0.00 3.91
456 2624 3.069586 TCCAATAAGCCCTCTACACGATG 59.930 47.826 0.00 0.00 0.00 3.84
457 2625 3.305720 TCCAATAAGCCCTCTACACGAT 58.694 45.455 0.00 0.00 0.00 3.73
458 2626 2.742348 TCCAATAAGCCCTCTACACGA 58.258 47.619 0.00 0.00 0.00 4.35
459 2627 3.753294 ATCCAATAAGCCCTCTACACG 57.247 47.619 0.00 0.00 0.00 4.49
460 2628 6.613153 ATCTATCCAATAAGCCCTCTACAC 57.387 41.667 0.00 0.00 0.00 2.90
461 2629 7.956315 ACTAATCTATCCAATAAGCCCTCTACA 59.044 37.037 0.00 0.00 0.00 2.74
462 2630 8.254508 CACTAATCTATCCAATAAGCCCTCTAC 58.745 40.741 0.00 0.00 0.00 2.59
463 2631 8.177456 TCACTAATCTATCCAATAAGCCCTCTA 58.823 37.037 0.00 0.00 0.00 2.43
464 2632 7.019388 TCACTAATCTATCCAATAAGCCCTCT 58.981 38.462 0.00 0.00 0.00 3.69
465 2633 7.246171 TCACTAATCTATCCAATAAGCCCTC 57.754 40.000 0.00 0.00 0.00 4.30
466 2634 6.214412 CCTCACTAATCTATCCAATAAGCCCT 59.786 42.308 0.00 0.00 0.00 5.19
467 2635 6.213600 TCCTCACTAATCTATCCAATAAGCCC 59.786 42.308 0.00 0.00 0.00 5.19
468 2636 7.246171 TCCTCACTAATCTATCCAATAAGCC 57.754 40.000 0.00 0.00 0.00 4.35
469 2637 7.327214 CCTCCTCACTAATCTATCCAATAAGC 58.673 42.308 0.00 0.00 0.00 3.09
470 2638 7.093112 CCCCTCCTCACTAATCTATCCAATAAG 60.093 44.444 0.00 0.00 0.00 1.73
471 2639 6.730977 CCCCTCCTCACTAATCTATCCAATAA 59.269 42.308 0.00 0.00 0.00 1.40
472 2640 6.264528 CCCCTCCTCACTAATCTATCCAATA 58.735 44.000 0.00 0.00 0.00 1.90
473 2641 5.097234 CCCCTCCTCACTAATCTATCCAAT 58.903 45.833 0.00 0.00 0.00 3.16
474 2642 4.493618 CCCCTCCTCACTAATCTATCCAA 58.506 47.826 0.00 0.00 0.00 3.53
475 2643 3.758787 GCCCCTCCTCACTAATCTATCCA 60.759 52.174 0.00 0.00 0.00 3.41
476 2644 2.835156 GCCCCTCCTCACTAATCTATCC 59.165 54.545 0.00 0.00 0.00 2.59
477 2645 2.835156 GGCCCCTCCTCACTAATCTATC 59.165 54.545 0.00 0.00 0.00 2.08
478 2646 2.495572 GGGCCCCTCCTCACTAATCTAT 60.496 54.545 12.23 0.00 34.39 1.98
479 2647 1.132817 GGGCCCCTCCTCACTAATCTA 60.133 57.143 12.23 0.00 34.39 1.98
480 2648 0.400670 GGGCCCCTCCTCACTAATCT 60.401 60.000 12.23 0.00 34.39 2.40
481 2649 0.694444 TGGGCCCCTCCTCACTAATC 60.694 60.000 22.27 0.00 34.39 1.75
482 2650 0.988678 GTGGGCCCCTCCTCACTAAT 60.989 60.000 22.27 0.00 34.89 1.73
483 2651 1.615424 GTGGGCCCCTCCTCACTAA 60.615 63.158 22.27 0.00 34.89 2.24
484 2652 2.040606 GTGGGCCCCTCCTCACTA 59.959 66.667 22.27 0.00 34.89 2.74
504 2672 1.381165 CGCCCCCTGATTTTAACGGG 61.381 60.000 0.00 0.00 36.42 5.28
505 2673 0.393267 TCGCCCCCTGATTTTAACGG 60.393 55.000 0.00 0.00 0.00 4.44
506 2674 1.675552 ATCGCCCCCTGATTTTAACG 58.324 50.000 0.00 0.00 0.00 3.18
507 2675 2.552743 GCTATCGCCCCCTGATTTTAAC 59.447 50.000 0.00 0.00 0.00 2.01
508 2676 2.441750 AGCTATCGCCCCCTGATTTTAA 59.558 45.455 0.00 0.00 36.60 1.52
509 2677 2.054799 AGCTATCGCCCCCTGATTTTA 58.945 47.619 0.00 0.00 36.60 1.52
510 2678 0.846693 AGCTATCGCCCCCTGATTTT 59.153 50.000 0.00 0.00 36.60 1.82
511 2679 0.846693 AAGCTATCGCCCCCTGATTT 59.153 50.000 0.00 0.00 36.60 2.17
512 2680 0.846693 AAAGCTATCGCCCCCTGATT 59.153 50.000 0.00 0.00 36.60 2.57
513 2681 1.729586 TAAAGCTATCGCCCCCTGAT 58.270 50.000 0.00 0.00 36.60 2.90
514 2682 1.729586 ATAAAGCTATCGCCCCCTGA 58.270 50.000 0.00 0.00 36.60 3.86
515 2683 2.567615 ACTATAAAGCTATCGCCCCCTG 59.432 50.000 0.00 0.00 36.60 4.45
516 2684 2.903926 ACTATAAAGCTATCGCCCCCT 58.096 47.619 0.00 0.00 36.60 4.79
517 2685 3.697619 AACTATAAAGCTATCGCCCCC 57.302 47.619 0.00 0.00 36.60 5.40
518 2686 3.751698 CCAAACTATAAAGCTATCGCCCC 59.248 47.826 0.00 0.00 36.60 5.80
519 2687 4.638304 TCCAAACTATAAAGCTATCGCCC 58.362 43.478 0.00 0.00 36.60 6.13
520 2688 6.803154 ATTCCAAACTATAAAGCTATCGCC 57.197 37.500 0.00 0.00 36.60 5.54
534 2702 8.990163 TGAAGACCTACTTAAAATTCCAAACT 57.010 30.769 0.00 0.00 39.13 2.66
537 2705 9.174166 GCTATGAAGACCTACTTAAAATTCCAA 57.826 33.333 0.00 0.00 39.13 3.53
538 2706 7.773690 GGCTATGAAGACCTACTTAAAATTCCA 59.226 37.037 0.00 0.00 39.13 3.53
539 2707 7.993758 AGGCTATGAAGACCTACTTAAAATTCC 59.006 37.037 0.00 0.00 39.13 3.01
540 2708 8.966069 AGGCTATGAAGACCTACTTAAAATTC 57.034 34.615 0.00 0.00 39.13 2.17
541 2709 8.773216 AGAGGCTATGAAGACCTACTTAAAATT 58.227 33.333 0.00 0.00 39.13 1.82
542 2710 8.325477 AGAGGCTATGAAGACCTACTTAAAAT 57.675 34.615 0.00 0.00 39.13 1.82
543 2711 7.735326 AGAGGCTATGAAGACCTACTTAAAA 57.265 36.000 0.00 0.00 39.13 1.52
544 2712 7.416438 CGAAGAGGCTATGAAGACCTACTTAAA 60.416 40.741 0.00 0.00 39.13 1.52
545 2713 6.039493 CGAAGAGGCTATGAAGACCTACTTAA 59.961 42.308 0.00 0.00 39.13 1.85
546 2714 5.531659 CGAAGAGGCTATGAAGACCTACTTA 59.468 44.000 0.00 0.00 39.13 2.24
547 2715 4.339814 CGAAGAGGCTATGAAGACCTACTT 59.660 45.833 0.00 0.00 42.03 2.24
548 2716 3.886505 CGAAGAGGCTATGAAGACCTACT 59.113 47.826 0.00 0.00 31.76 2.57
549 2717 3.633065 ACGAAGAGGCTATGAAGACCTAC 59.367 47.826 0.00 0.00 31.76 3.18
550 2718 3.899726 ACGAAGAGGCTATGAAGACCTA 58.100 45.455 0.00 0.00 31.76 3.08
551 2719 2.741145 ACGAAGAGGCTATGAAGACCT 58.259 47.619 0.00 0.00 33.55 3.85
552 2720 3.004944 CCTACGAAGAGGCTATGAAGACC 59.995 52.174 0.00 0.00 0.00 3.85
553 2721 3.633065 ACCTACGAAGAGGCTATGAAGAC 59.367 47.826 0.00 0.00 40.65 3.01
554 2722 3.632604 CACCTACGAAGAGGCTATGAAGA 59.367 47.826 0.00 0.00 40.65 2.87
555 2723 3.381908 ACACCTACGAAGAGGCTATGAAG 59.618 47.826 0.00 0.00 40.65 3.02
556 2724 3.362706 ACACCTACGAAGAGGCTATGAA 58.637 45.455 0.00 0.00 40.65 2.57
557 2725 3.014304 ACACCTACGAAGAGGCTATGA 57.986 47.619 0.00 0.00 40.65 2.15
558 2726 3.253677 CCTACACCTACGAAGAGGCTATG 59.746 52.174 0.00 0.00 40.65 2.23
559 2727 3.137913 TCCTACACCTACGAAGAGGCTAT 59.862 47.826 0.00 0.00 40.65 2.97
560 2728 2.507058 TCCTACACCTACGAAGAGGCTA 59.493 50.000 0.00 0.00 40.65 3.93
561 2729 1.284198 TCCTACACCTACGAAGAGGCT 59.716 52.381 0.00 0.00 40.65 4.58
562 2730 1.760192 TCCTACACCTACGAAGAGGC 58.240 55.000 0.00 0.00 40.65 4.70
563 2731 6.005198 AGATAATCCTACACCTACGAAGAGG 58.995 44.000 0.00 0.00 42.89 3.69
564 2732 7.513371 AAGATAATCCTACACCTACGAAGAG 57.487 40.000 0.00 0.00 0.00 2.85
565 2733 7.893124 AAAGATAATCCTACACCTACGAAGA 57.107 36.000 0.00 0.00 0.00 2.87
566 2734 8.943909 AAAAAGATAATCCTACACCTACGAAG 57.056 34.615 0.00 0.00 0.00 3.79
627 2795 3.426159 CGCTGTCAATTCACCATAACCAC 60.426 47.826 0.00 0.00 0.00 4.16
766 2936 1.076485 TCTGTCCGTACCTAGCCCC 60.076 63.158 0.00 0.00 0.00 5.80
847 3018 5.990120 AGAAATAAACTGGCTTTGCATCT 57.010 34.783 0.00 0.00 0.00 2.90
904 3077 0.955919 CCCGAGGGTTTCTTGTGAGC 60.956 60.000 0.00 0.00 0.00 4.26
957 3130 1.687123 CGACGGGATCTATCAGGGTTT 59.313 52.381 0.00 0.00 0.00 3.27
1022 3196 1.483827 AGAAGATCTTGCTCATGGCGA 59.516 47.619 14.00 0.00 45.43 5.54
1045 3219 4.408821 TGGGGGCTCGCATGTCAC 62.409 66.667 0.00 0.00 0.00 3.67
1299 3473 3.766591 GGACAGAGAGGATGAGAAAGTCA 59.233 47.826 0.00 0.00 40.38 3.41
1309 3483 2.699846 GCATGAAGAGGACAGAGAGGAT 59.300 50.000 0.00 0.00 0.00 3.24
1752 3930 2.677003 CCACGCGGACGATTTTGCT 61.677 57.895 12.47 0.00 43.93 3.91
2172 4354 2.411701 TCGACGGCGATCATCCAC 59.588 61.111 10.67 0.00 42.51 4.02
2187 4369 4.275936 ACCAACATCTTCTTTTTCAGGTCG 59.724 41.667 0.00 0.00 0.00 4.79
2440 4625 4.140663 ACCCTACCTAGAGCAGTGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
2557 4745 4.321974 CCTTTGGATCAACAAACTAAGGGC 60.322 45.833 0.00 0.00 35.57 5.19
2619 4807 9.865321 CATCAGAATAAACATCTCAAAACCAAT 57.135 29.630 0.00 0.00 0.00 3.16
2624 4812 9.577110 GCAATCATCAGAATAAACATCTCAAAA 57.423 29.630 0.00 0.00 0.00 2.44
2626 4814 8.283699 TGCAATCATCAGAATAAACATCTCAA 57.716 30.769 0.00 0.00 0.00 3.02
2670 4858 7.865385 GTCTCAGTATTTAATGCTAGACTCAGG 59.135 40.741 16.67 0.00 30.74 3.86
2794 4985 7.961351 TCATCCTTGTATTTGTTGGTCAATTT 58.039 30.769 0.00 0.00 35.84 1.82
2854 5045 4.441356 CCTTTTTAGTCTGTTTGGCTGCAA 60.441 41.667 0.50 0.00 0.00 4.08
2955 5151 7.464844 CGATGTAGTGAGAAGTAGCTATATCCG 60.465 44.444 0.00 0.00 32.23 4.18
3019 5217 4.046462 CACAAAAGTCTGCAACTGATTGG 58.954 43.478 19.62 8.31 38.78 3.16
3045 5243 4.760204 CCAAACCGGATCAACTAAGAGTTT 59.240 41.667 9.46 0.00 34.25 2.66
3110 5355 5.375417 TGCATCACAACACCAGAAAATAG 57.625 39.130 0.00 0.00 0.00 1.73
3191 5438 3.132289 CCTTCCATTGCTGCATCAAGAAT 59.868 43.478 9.12 0.00 0.00 2.40
3195 5442 1.927487 ACCTTCCATTGCTGCATCAA 58.073 45.000 5.30 5.30 0.00 2.57
3265 5512 4.507710 CTTTTGAGATGACGAGGATGGAA 58.492 43.478 0.00 0.00 0.00 3.53
3266 5513 3.679917 GCTTTTGAGATGACGAGGATGGA 60.680 47.826 0.00 0.00 0.00 3.41
3275 5522 4.791974 CTTGAGTTGGCTTTTGAGATGAC 58.208 43.478 0.00 0.00 0.00 3.06
3304 5552 6.470557 AAAAATCTCCATGTTTGCATTTCG 57.529 33.333 0.00 0.00 31.99 3.46
3345 5600 3.561120 TTCGAAGGGCGGCCAACAT 62.561 57.895 31.59 13.18 41.33 2.71
3359 5614 4.963318 ATGGGAATAGCAGATTCTTCGA 57.037 40.909 10.23 0.00 0.00 3.71
3401 5658 9.672673 AGCTACTCATAGATAACAACAAAACAT 57.327 29.630 0.00 0.00 0.00 2.71
3411 5668 8.810990 ATGGTAGGTAGCTACTCATAGATAAC 57.189 38.462 26.56 10.32 37.27 1.89
3458 5716 9.464714 CAACATACTCCATAGAACTACACATAC 57.535 37.037 0.00 0.00 0.00 2.39
3514 5774 1.504359 CGAAGCCGACAAACAAGGTA 58.496 50.000 0.00 0.00 38.22 3.08
3564 5824 9.832445 ACACATAGATATTTAAGACCAACGATT 57.168 29.630 0.00 0.00 0.00 3.34
3645 5905 6.653740 AGAAAGGGTGTTGTATTGCTACTTAC 59.346 38.462 0.00 0.00 0.00 2.34
3785 6069 3.423539 TGGCAAGTTAAGAGCAGACAT 57.576 42.857 0.00 0.00 0.00 3.06
3788 6072 4.019792 TCATTGGCAAGTTAAGAGCAGA 57.980 40.909 5.96 0.00 0.00 4.26
3824 6109 0.890683 GCCTCCACAACCATTTCCAG 59.109 55.000 0.00 0.00 0.00 3.86
3854 6158 3.764218 TGTCGGCAAAATTAACCCCTTA 58.236 40.909 0.00 0.00 0.00 2.69
3922 6229 8.132995 CCCAAAAACTACTTTTCGTACAAAGAT 58.867 33.333 11.51 1.27 37.24 2.40
3924 6231 7.474190 TCCCAAAAACTACTTTTCGTACAAAG 58.526 34.615 4.57 4.57 39.35 2.77
4125 6480 2.159327 TCGCGTCCTAGACATATCGA 57.841 50.000 5.77 0.00 32.09 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.