Multiple sequence alignment - TraesCS4A01G014500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G014500 chr4A 100.000 5270 0 0 1 5270 9377070 9382339 0.000000e+00 9732.0
1 TraesCS4A01G014500 chr4A 98.864 88 1 0 3605 3692 684976196 684976109 1.960000e-34 158.0
2 TraesCS4A01G014500 chr4D 89.771 2923 208 46 717 3609 459431368 459428507 0.000000e+00 3657.0
3 TraesCS4A01G014500 chr4D 91.108 1597 116 18 3687 5270 459428512 459426929 0.000000e+00 2139.0
4 TraesCS4A01G014500 chr4D 84.351 639 72 13 6 624 459433467 459432837 7.550000e-168 601.0
5 TraesCS4A01G014500 chr4D 84.810 79 12 0 310 388 54700462 54700540 4.370000e-11 80.5
6 TraesCS4A01G014500 chr4D 100.000 28 0 0 697 724 268599314 268599341 1.000000e-02 52.8
7 TraesCS4A01G014500 chr4D 100.000 28 0 0 697 724 275214575 275214548 1.000000e-02 52.8
8 TraesCS4A01G014500 chr4B 89.422 2855 207 42 797 3609 574227092 574224291 0.000000e+00 3511.0
9 TraesCS4A01G014500 chr4B 93.232 990 51 6 3687 4673 574224296 574223320 0.000000e+00 1443.0
10 TraesCS4A01G014500 chr4B 90.678 590 41 9 4678 5259 574223145 574222562 0.000000e+00 773.0
11 TraesCS4A01G014500 chr4B 79.208 808 102 34 1 779 574228975 574228205 7.880000e-138 501.0
12 TraesCS4A01G014500 chr4B 100.000 38 0 0 1041 1078 574226830 574226793 2.630000e-08 71.3
13 TraesCS4A01G014500 chr4B 95.455 44 2 0 761 804 574227962 574227919 2.630000e-08 71.3
14 TraesCS4A01G014500 chr3D 95.960 99 1 3 3605 3703 22679059 22679154 1.960000e-34 158.0
15 TraesCS4A01G014500 chr3D 95.960 99 1 3 3605 3703 22767899 22767804 1.960000e-34 158.0
16 TraesCS4A01G014500 chr3D 98.837 86 1 0 3605 3690 436676899 436676984 2.540000e-33 154.0
17 TraesCS4A01G014500 chr6B 96.774 93 3 0 3601 3693 458503479 458503571 7.070000e-34 156.0
18 TraesCS4A01G014500 chr6B 92.593 108 5 2 3605 3711 48981517 48981412 9.140000e-33 152.0
19 TraesCS4A01G014500 chr6D 98.837 86 1 0 3606 3691 340947311 340947226 2.540000e-33 154.0
20 TraesCS4A01G014500 chr6D 97.674 86 2 0 3606 3691 299191263 299191348 1.180000e-31 148.0
21 TraesCS4A01G014500 chr6D 77.957 186 27 10 243 421 47177993 47178171 2.600000e-18 104.0
22 TraesCS4A01G014500 chr2B 88.393 112 13 0 3601 3712 167084523 167084634 9.210000e-28 135.0
23 TraesCS4A01G014500 chr3B 75.630 238 40 15 4880 5109 265841176 265841403 9.340000e-18 102.0
24 TraesCS4A01G014500 chrUn 91.935 62 2 3 345 405 291410255 291410196 3.380000e-12 84.2
25 TraesCS4A01G014500 chrUn 77.419 155 25 8 347 494 308829854 308830005 3.380000e-12 84.2
26 TraesCS4A01G014500 chr7A 82.474 97 14 2 310 404 66172401 66172306 1.220000e-11 82.4
27 TraesCS4A01G014500 chr2D 89.362 47 5 0 678 724 353353339 353353293 5.700000e-05 60.2
28 TraesCS4A01G014500 chr2A 92.308 39 3 0 686 724 57166953 57166915 7.370000e-04 56.5
29 TraesCS4A01G014500 chr1A 92.308 39 3 0 686 724 56448757 56448719 7.370000e-04 56.5
30 TraesCS4A01G014500 chr1A 100.000 28 0 0 697 724 121465526 121465553 1.000000e-02 52.8
31 TraesCS4A01G014500 chr7D 100.000 28 0 0 697 724 71766886 71766913 1.000000e-02 52.8
32 TraesCS4A01G014500 chr7D 100.000 28 0 0 697 724 74705030 74705003 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G014500 chr4A 9377070 9382339 5269 False 9732.000000 9732 100.0000 1 5270 1 chr4A.!!$F1 5269
1 TraesCS4A01G014500 chr4D 459426929 459433467 6538 True 2132.333333 3657 88.4100 6 5270 3 chr4D.!!$R2 5264
2 TraesCS4A01G014500 chr4B 574222562 574228975 6413 True 1061.766667 3511 91.3325 1 5259 6 chr4B.!!$R1 5258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 615 0.031314 CGACCGACTCATAGCATGCT 59.969 55.0 25.99 25.99 0.00 3.79 F
621 644 0.246360 ATTGTCATCCTCGCGACACA 59.754 50.0 3.71 0.00 41.67 3.72 F
622 645 0.246360 TTGTCATCCTCGCGACACAT 59.754 50.0 3.71 0.00 41.67 3.21 F
1310 3812 0.249155 CCAAACTGCTTGCACTGTGG 60.249 55.0 10.21 0.00 33.27 4.17 F
1866 4388 0.313043 CCAGTTTGGCTGCACTTCTG 59.687 55.0 0.50 4.73 43.71 3.02 F
2676 5216 0.321919 GCATGCAAGTCCACTCAGGA 60.322 55.0 14.21 0.00 46.75 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 5013 0.248289 AGCAGATGGCCATGCAAAAC 59.752 50.000 28.45 12.29 46.50 2.43 R
2485 5020 1.452651 CGACCAAGCAGATGGCCAT 60.453 57.895 20.96 20.96 44.75 4.40 R
2554 5091 1.959042 AGACCACAGTTCAAGCACAG 58.041 50.000 0.00 0.00 0.00 3.66 R
3022 5562 0.107410 AGGAACAAACACCAGCGTGA 60.107 50.000 0.00 0.00 43.14 4.35 R
3023 5563 0.307760 GAGGAACAAACACCAGCGTG 59.692 55.000 0.00 0.00 46.11 5.34 R
4460 7010 0.320247 CTCGCCTCAAGAGTTGCTGT 60.320 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.202233 TGCCATGCTTGTGAAAGAAAATGA 60.202 37.500 0.00 0.00 0.00 2.57
68 69 6.142817 AGAAAATGAGAAACAATTCGGTTCG 58.857 36.000 1.64 0.00 40.63 3.95
72 73 1.796459 AGAAACAATTCGGTTCGGTCG 59.204 47.619 1.64 0.00 40.63 4.79
80 81 2.577059 GGTTCGGTCGGCTGATCA 59.423 61.111 6.61 0.00 0.00 2.92
110 117 1.135527 CGGGCGAGTAACAACTGGATA 59.864 52.381 0.00 0.00 0.00 2.59
157 164 7.039882 CACGTGGTACCTATCTAGAAACATTT 58.960 38.462 14.36 0.00 0.00 2.32
165 172 6.099845 ACCTATCTAGAAACATTTCGTGGGAT 59.900 38.462 0.00 4.85 41.92 3.85
169 176 4.021102 AGAAACATTTCGTGGGATGAGT 57.979 40.909 0.00 0.00 41.92 3.41
192 199 1.217882 CTTATCCATTCGTCACCGCC 58.782 55.000 0.00 0.00 0.00 6.13
195 202 0.035439 ATCCATTCGTCACCGCCTTT 60.035 50.000 0.00 0.00 0.00 3.11
196 203 0.953471 TCCATTCGTCACCGCCTTTG 60.953 55.000 0.00 0.00 0.00 2.77
197 204 1.234615 CCATTCGTCACCGCCTTTGT 61.235 55.000 0.00 0.00 0.00 2.83
198 205 0.165944 CATTCGTCACCGCCTTTGTC 59.834 55.000 0.00 0.00 0.00 3.18
199 206 0.953960 ATTCGTCACCGCCTTTGTCC 60.954 55.000 0.00 0.00 0.00 4.02
200 207 2.030562 CGTCACCGCCTTTGTCCT 59.969 61.111 0.00 0.00 0.00 3.85
201 208 2.027625 CGTCACCGCCTTTGTCCTC 61.028 63.158 0.00 0.00 0.00 3.71
202 209 1.070786 GTCACCGCCTTTGTCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
203 210 0.534203 GTCACCGCCTTTGTCCTCAA 60.534 55.000 0.00 0.00 0.00 3.02
204 211 0.400213 TCACCGCCTTTGTCCTCAAT 59.600 50.000 0.00 0.00 33.32 2.57
219 226 2.601905 CTCAATCCCAATCCCAATCCC 58.398 52.381 0.00 0.00 0.00 3.85
226 233 1.500303 CCAATCCCAATCCCCATGAGA 59.500 52.381 0.00 0.00 0.00 3.27
230 237 4.564616 ATCCCAATCCCCATGAGAAAAT 57.435 40.909 0.00 0.00 0.00 1.82
232 239 5.480058 TCCCAATCCCCATGAGAAAATAA 57.520 39.130 0.00 0.00 0.00 1.40
258 265 0.400213 TGCAAACGTCCCTCCTCAAT 59.600 50.000 0.00 0.00 0.00 2.57
264 271 3.821421 ACGTCCCTCCTCAATAACATC 57.179 47.619 0.00 0.00 0.00 3.06
317 329 1.963515 GCAACACAACCTTTCATCCCT 59.036 47.619 0.00 0.00 0.00 4.20
322 334 6.389906 CAACACAACCTTTCATCCCTAATTC 58.610 40.000 0.00 0.00 0.00 2.17
354 366 4.943705 ACGAGGAACAATATCTGCAACATT 59.056 37.500 0.00 0.00 0.00 2.71
448 462 7.763172 ACACAATCTTTGTTGCGAAAATTTA 57.237 28.000 0.00 0.00 43.23 1.40
458 472 8.958175 TTGTTGCGAAAATTTATACAGTAAGG 57.042 30.769 0.00 0.00 0.00 2.69
485 500 1.673920 TCGCAAAAGGGTTCTGAACAC 59.326 47.619 21.01 18.15 34.10 3.32
507 522 3.937706 CCACCTTTGCAATTGTGAAAACA 59.062 39.130 23.20 0.00 28.70 2.83
509 524 5.277442 CCACCTTTGCAATTGTGAAAACATC 60.277 40.000 23.20 0.00 28.70 3.06
528 543 5.684704 ACATCGTTGACCCATTGATCTAAT 58.315 37.500 0.00 0.00 0.00 1.73
539 562 1.687563 TGATCTAATGGCCGTCGAGA 58.312 50.000 11.03 11.03 0.00 4.04
592 615 0.031314 CGACCGACTCATAGCATGCT 59.969 55.000 25.99 25.99 0.00 3.79
594 617 0.390860 ACCGACTCATAGCATGCTCC 59.609 55.000 26.57 6.76 0.00 4.70
597 620 2.549563 CCGACTCATAGCATGCTCCAAT 60.550 50.000 26.57 9.88 0.00 3.16
620 643 1.359848 AATTGTCATCCTCGCGACAC 58.640 50.000 3.71 0.00 41.67 3.67
621 644 0.246360 ATTGTCATCCTCGCGACACA 59.754 50.000 3.71 0.00 41.67 3.72
622 645 0.246360 TTGTCATCCTCGCGACACAT 59.754 50.000 3.71 0.00 41.67 3.21
631 669 2.476686 CCTCGCGACACATAGACGTTTA 60.477 50.000 3.71 0.00 37.70 2.01
635 673 5.331098 TCGCGACACATAGACGTTTAATTA 58.669 37.500 3.71 0.00 37.70 1.40
675 713 8.736751 ATCAACGTTTAATTTGTAGCGAAATT 57.263 26.923 0.00 8.54 38.69 1.82
730 2130 4.815269 AGAGTGTTTAGATCACACAGAGC 58.185 43.478 15.01 4.19 46.01 4.09
756 2156 7.117236 CGAGTACCTATTTTGTGCTTTTGACTA 59.883 37.037 0.00 0.00 0.00 2.59
771 2433 7.121168 TGCTTTTGACTATGTTATTCCCTCTTG 59.879 37.037 0.00 0.00 0.00 3.02
878 3379 1.984570 TCCTCGCCCTCACCTTCTG 60.985 63.158 0.00 0.00 0.00 3.02
956 3457 4.923942 CCGCCGCATCTGCATCCT 62.924 66.667 2.72 0.00 42.21 3.24
957 3458 3.646976 CGCCGCATCTGCATCCTG 61.647 66.667 2.72 0.00 42.21 3.86
1232 3733 2.932614 CCCTCAAGATTTACACAGCTCG 59.067 50.000 0.00 0.00 0.00 5.03
1299 3801 5.570589 CGTGTTACTAGTACTACCAAACTGC 59.429 44.000 0.91 1.96 0.00 4.40
1310 3812 0.249155 CCAAACTGCTTGCACTGTGG 60.249 55.000 10.21 0.00 33.27 4.17
1349 3851 4.452114 TCGGAGTGAGATGTTTGACAATTG 59.548 41.667 3.24 3.24 0.00 2.32
1405 3913 0.394352 AAATCATGTGTCGGGGAGGC 60.394 55.000 0.00 0.00 0.00 4.70
1414 3922 2.203509 CGGGGAGGCGACTATCCT 60.204 66.667 9.68 0.00 44.43 3.24
1429 3937 1.169661 ATCCTTGCGCGTTTTGGTGA 61.170 50.000 8.43 0.00 0.00 4.02
1444 3959 0.535335 GGTGATGTCTTAGGTCCGCA 59.465 55.000 0.00 0.00 0.00 5.69
1518 4035 8.632906 AGATTGATGAGATATGGGATTGTTTC 57.367 34.615 0.00 0.00 0.00 2.78
1550 4067 2.237143 TGTTGTGAATGGGGCAAACAAA 59.763 40.909 0.00 0.00 32.92 2.83
1580 4097 7.851228 TCAAAGAATGGACATAGTGTGACTAT 58.149 34.615 0.00 0.00 41.82 2.12
1600 4119 8.692710 TGACTATGTGGTAGTTACCTGAAATAG 58.307 37.037 9.58 11.71 43.66 1.73
1623 4142 5.419788 AGAAGATGCATTTCAAGCCAATACA 59.580 36.000 17.89 0.00 0.00 2.29
1705 4224 8.774586 ACGTGATATTATTAAACATGAGGAAGC 58.225 33.333 0.00 0.00 0.00 3.86
1719 4238 3.517100 TGAGGAAGCTGTAAGAATGCTCT 59.483 43.478 3.06 0.00 38.62 4.09
1727 4246 5.180868 AGCTGTAAGAATGCTCTTTTCACAG 59.819 40.000 10.57 10.57 42.17 3.66
1737 4256 8.798859 AATGCTCTTTTCACAGTCTATTGTAT 57.201 30.769 0.00 0.00 0.00 2.29
1808 4327 6.778069 TCGATCTCATATAAGTGAAGGAGGTT 59.222 38.462 0.00 0.00 0.00 3.50
1815 4334 9.090103 TCATATAAGTGAAGGAGGTTATGTAGG 57.910 37.037 0.00 0.00 0.00 3.18
1818 4337 4.040755 AGTGAAGGAGGTTATGTAGGCAT 58.959 43.478 0.00 0.00 39.03 4.40
1823 4342 5.810080 AGGAGGTTATGTAGGCATAGAAC 57.190 43.478 0.00 0.00 38.64 3.01
1828 4347 8.322091 GGAGGTTATGTAGGCATAGAACATTAT 58.678 37.037 0.00 0.00 38.64 1.28
1835 4354 7.450074 TGTAGGCATAGAACATTATAAGTGGG 58.550 38.462 0.00 0.00 0.00 4.61
1837 4356 5.070001 GGCATAGAACATTATAAGTGGGCA 58.930 41.667 0.00 0.00 0.00 5.36
1839 4358 6.127897 GGCATAGAACATTATAAGTGGGCATC 60.128 42.308 0.00 0.00 0.00 3.91
1848 4370 8.860088 ACATTATAAGTGGGCATCTTATTTTCC 58.140 33.333 15.01 0.00 38.51 3.13
1866 4388 0.313043 CCAGTTTGGCTGCACTTCTG 59.687 55.000 0.50 4.73 43.71 3.02
1874 4396 2.831526 TGGCTGCACTTCTGAGTATACA 59.168 45.455 5.50 0.00 33.90 2.29
1885 4407 8.993121 CACTTCTGAGTATACAAGATTTGTTGT 58.007 33.333 5.50 0.00 38.62 3.32
1887 4409 9.208022 CTTCTGAGTATACAAGATTTGTTGTCA 57.792 33.333 5.50 0.00 42.22 3.58
1892 4414 1.336755 ACAAGATTTGTTGTCACGCCC 59.663 47.619 0.00 0.00 42.22 6.13
1899 4421 0.938713 TGTTGTCACGCCCGTTTTAG 59.061 50.000 0.00 0.00 0.00 1.85
1933 4455 5.815222 TGATGGGACGATTTGTACAAGTATG 59.185 40.000 8.56 5.00 30.49 2.39
1934 4456 3.936453 TGGGACGATTTGTACAAGTATGC 59.064 43.478 8.56 3.44 30.49 3.14
1938 4460 4.827692 ACGATTTGTACAAGTATGCCTCA 58.172 39.130 8.56 0.00 0.00 3.86
2002 4526 6.778069 CCTGAACTCCATATCTAGGACTTGTA 59.222 42.308 0.00 0.00 0.00 2.41
2029 4561 4.518970 GTCATGGGTAAGTCAAGCAAAGAA 59.481 41.667 0.00 0.00 0.00 2.52
2045 4577 9.467258 CAAGCAAAGAAAATCTGATAAAGTTGA 57.533 29.630 0.00 0.00 0.00 3.18
2053 4585 9.415544 GAAAATCTGATAAAGTTGAATTGCTGT 57.584 29.630 0.00 0.00 0.00 4.40
2058 4590 7.648908 TCTGATAAAGTTGAATTGCTGTGTTTG 59.351 33.333 0.00 0.00 0.00 2.93
2067 4599 4.595762 ATTGCTGTGTTTGAATGCTCTT 57.404 36.364 0.00 0.00 0.00 2.85
2070 4602 3.130869 TGCTGTGTTTGAATGCTCTTGTT 59.869 39.130 0.00 0.00 0.00 2.83
2071 4603 4.114794 GCTGTGTTTGAATGCTCTTGTTT 58.885 39.130 0.00 0.00 0.00 2.83
2072 4604 4.567959 GCTGTGTTTGAATGCTCTTGTTTT 59.432 37.500 0.00 0.00 0.00 2.43
2098 4630 3.009026 TGGTATGTGTGTTAGCATGCTG 58.991 45.455 30.42 0.00 0.00 4.41
2129 4661 0.390860 TTTTTGTGCCCCGTTGATGG 59.609 50.000 0.00 0.00 0.00 3.51
2155 4687 4.075763 CAACTTTGCATCTGAGCTACAC 57.924 45.455 0.00 0.00 34.99 2.90
2156 4688 2.704572 ACTTTGCATCTGAGCTACACC 58.295 47.619 0.00 0.00 34.99 4.16
2157 4689 2.038952 ACTTTGCATCTGAGCTACACCA 59.961 45.455 0.00 0.00 34.99 4.17
2161 4694 2.224499 TGCATCTGAGCTACACCAACAA 60.224 45.455 0.00 0.00 34.99 2.83
2173 4706 8.213518 AGCTACACCAACAACTATCAATATTG 57.786 34.615 9.29 9.29 0.00 1.90
2183 4716 9.807649 AACAACTATCAATATTGGAGCATTTTC 57.192 29.630 15.36 0.00 0.00 2.29
2190 4724 7.821652 TCAATATTGGAGCATTTTCGTTGTTA 58.178 30.769 15.36 0.00 0.00 2.41
2297 4832 0.882474 CCGATTCCTAGGAGGCGTAG 59.118 60.000 24.70 12.89 34.61 3.51
2333 4868 2.943690 CGAGGAGACATAGAAGACGGAA 59.056 50.000 0.00 0.00 0.00 4.30
2406 4941 9.166173 CATGGATCTGAACAGAACAGTTTAATA 57.834 33.333 8.59 0.00 41.36 0.98
2476 5011 9.836864 TTCATTCTTCTACACATACATATTGCT 57.163 29.630 0.00 0.00 0.00 3.91
2485 5020 7.389803 ACACATACATATTGCTAGTTTTGCA 57.610 32.000 0.00 0.00 38.80 4.08
2554 5091 5.048782 TCAACTCACATATTGACAGTTTGCC 60.049 40.000 0.00 0.00 29.89 4.52
2569 5109 0.740149 TTGCCTGTGCTTGAACTGTG 59.260 50.000 0.00 0.00 38.71 3.66
2570 5110 1.102809 TGCCTGTGCTTGAACTGTGG 61.103 55.000 0.00 0.00 38.71 4.17
2590 5130 7.451877 ACTGTGGTCTTCTACAAATCTTCTCTA 59.548 37.037 0.00 0.00 34.80 2.43
2609 5149 9.347934 CTTCTCTATCTTGTTTGTACTAGTGTG 57.652 37.037 5.39 0.00 0.00 3.82
2673 5213 1.241165 CTTGCATGCAAGTCCACTCA 58.759 50.000 40.10 16.13 45.91 3.41
2676 5216 0.321919 GCATGCAAGTCCACTCAGGA 60.322 55.000 14.21 0.00 46.75 3.86
2683 5223 4.952482 TCCACTCAGGAGCTGTGA 57.048 55.556 0.00 0.00 43.07 3.58
2684 5224 3.147826 TCCACTCAGGAGCTGTGAA 57.852 52.632 0.00 0.00 43.07 3.18
2685 5225 0.681733 TCCACTCAGGAGCTGTGAAC 59.318 55.000 0.00 0.00 43.07 3.18
2686 5226 0.683973 CCACTCAGGAGCTGTGAACT 59.316 55.000 0.00 0.00 41.22 3.01
2687 5227 1.895798 CCACTCAGGAGCTGTGAACTA 59.104 52.381 0.00 0.00 41.22 2.24
2772 5312 7.396055 TCCATCAAGGAAAAATAACGGATCTTT 59.604 33.333 0.00 0.00 45.65 2.52
2780 5320 7.201522 GGAAAAATAACGGATCTTTTGCCATTC 60.202 37.037 8.58 0.32 37.46 2.67
2781 5321 4.918810 ATAACGGATCTTTTGCCATTCC 57.081 40.909 0.00 0.00 0.00 3.01
2856 5396 5.999205 AAATACAAATTGTGCCATCTCCA 57.001 34.783 9.15 0.00 0.00 3.86
2860 5400 4.634199 ACAAATTGTGCCATCTCCAAAAG 58.366 39.130 0.00 0.00 0.00 2.27
2865 5405 1.815003 GTGCCATCTCCAAAAGACCAG 59.185 52.381 0.00 0.00 36.65 4.00
2866 5406 1.272092 TGCCATCTCCAAAAGACCAGG 60.272 52.381 0.00 0.00 36.65 4.45
2884 5424 3.604582 CAGGACTGTTCTCCAAATCTCC 58.395 50.000 0.00 0.00 31.94 3.71
2892 5432 6.071051 ACTGTTCTCCAAATCTCCTACTTCTC 60.071 42.308 0.00 0.00 0.00 2.87
2901 5441 6.563222 AATCTCCTACTTCTCTGTATACGC 57.437 41.667 0.00 0.00 0.00 4.42
2909 5449 3.277142 TCTCTGTATACGCCTCTGTCA 57.723 47.619 0.00 0.00 0.00 3.58
2925 5465 5.980116 CCTCTGTCATGTTCTTCCGTTATAG 59.020 44.000 0.00 0.00 0.00 1.31
2927 5467 7.201794 CCTCTGTCATGTTCTTCCGTTATAGTA 60.202 40.741 0.00 0.00 0.00 1.82
2928 5468 8.234136 TCTGTCATGTTCTTCCGTTATAGTAT 57.766 34.615 0.00 0.00 0.00 2.12
2929 5469 9.346005 TCTGTCATGTTCTTCCGTTATAGTATA 57.654 33.333 0.00 0.00 0.00 1.47
2933 5473 9.961265 TCATGTTCTTCCGTTATAGTATAACTG 57.039 33.333 24.02 19.53 0.00 3.16
2971 5511 3.194755 GGTGTTCCCAGAAACAACAAAGT 59.805 43.478 0.16 0.00 44.53 2.66
2987 5527 5.391312 ACAAAGTTGAGGGATAACAATGC 57.609 39.130 0.00 0.00 0.00 3.56
2988 5528 4.832266 ACAAAGTTGAGGGATAACAATGCA 59.168 37.500 0.00 0.00 0.00 3.96
3021 5561 9.995003 AACATTTGCTTCTGTTTATTTAATGGA 57.005 25.926 0.00 0.00 31.74 3.41
3045 5585 1.179174 GCTGGTGTTTGTTCCTCCCC 61.179 60.000 0.00 0.00 0.00 4.81
3055 5595 2.952116 TGTTCCTCCCCAATTTCGTTT 58.048 42.857 0.00 0.00 0.00 3.60
3102 5644 4.118410 CTCTCTCATTATCTGTGTGCACC 58.882 47.826 15.69 6.37 0.00 5.01
3119 5661 2.364002 GCACCCCACATTTACAAGTTGT 59.636 45.455 14.05 14.05 0.00 3.32
3191 5733 3.236816 GTTTGTGCAGTGCATATGTGTC 58.763 45.455 22.87 6.89 41.91 3.67
3194 5736 3.936564 TGTGCAGTGCATATGTGTCTTA 58.063 40.909 22.87 0.00 41.91 2.10
3204 5746 7.121759 AGTGCATATGTGTCTTAGCTTCATTTT 59.878 33.333 4.29 0.00 0.00 1.82
3205 5747 7.219535 GTGCATATGTGTCTTAGCTTCATTTTG 59.780 37.037 4.29 0.00 0.00 2.44
3207 5749 8.133627 GCATATGTGTCTTAGCTTCATTTTGAT 58.866 33.333 4.29 0.00 0.00 2.57
3208 5750 9.661187 CATATGTGTCTTAGCTTCATTTTGATC 57.339 33.333 0.00 0.00 0.00 2.92
3212 5754 8.632679 TGTGTCTTAGCTTCATTTTGATCTTTT 58.367 29.630 0.00 0.00 0.00 2.27
3213 5755 9.122613 GTGTCTTAGCTTCATTTTGATCTTTTC 57.877 33.333 0.00 0.00 0.00 2.29
3214 5756 9.071276 TGTCTTAGCTTCATTTTGATCTTTTCT 57.929 29.630 0.00 0.00 0.00 2.52
3218 5760 9.793252 TTAGCTTCATTTTGATCTTTTCTATGC 57.207 29.630 0.00 0.00 0.00 3.14
3219 5761 8.064336 AGCTTCATTTTGATCTTTTCTATGCT 57.936 30.769 0.00 0.00 0.00 3.79
3220 5762 8.189460 AGCTTCATTTTGATCTTTTCTATGCTC 58.811 33.333 0.00 0.00 0.00 4.26
3223 5765 7.478322 TCATTTTGATCTTTTCTATGCTCTGC 58.522 34.615 0.00 0.00 0.00 4.26
3243 5785 3.007506 TGCTCACTTGTTTCGATTAGGGA 59.992 43.478 0.00 0.00 0.00 4.20
3248 5790 5.045869 TCACTTGTTTCGATTAGGGATCCTT 60.046 40.000 12.58 6.67 34.61 3.36
3265 5807 7.068716 AGGGATCCTTTTGCTCATTAATGTTAC 59.931 37.037 12.58 6.73 0.00 2.50
3436 5982 5.703876 CTGTTAGGAAAAATGTTGAGGAGC 58.296 41.667 0.00 0.00 0.00 4.70
3534 6080 5.388944 GTTGATGCTCAGCTACAAAAAGAG 58.611 41.667 9.86 0.00 0.00 2.85
3538 6084 4.067896 TGCTCAGCTACAAAAAGAGAAGG 58.932 43.478 0.00 0.00 0.00 3.46
3539 6085 3.120025 GCTCAGCTACAAAAAGAGAAGGC 60.120 47.826 0.00 0.00 0.00 4.35
3581 6127 6.702282 GCCAGGCAGAAAGTAGTAAGTATTAG 59.298 42.308 6.55 0.00 0.00 1.73
3587 6133 7.307455 GCAGAAAGTAGTAAGTATTAGGCATGC 60.307 40.741 9.90 9.90 0.00 4.06
3603 6149 1.616865 CATGCCATGCCTCCCTTATTG 59.383 52.381 0.00 0.00 0.00 1.90
3604 6150 0.106066 TGCCATGCCTCCCTTATTGG 60.106 55.000 0.00 0.00 0.00 3.16
3605 6151 0.106015 GCCATGCCTCCCTTATTGGT 60.106 55.000 0.00 0.00 0.00 3.67
3606 6152 1.144913 GCCATGCCTCCCTTATTGGTA 59.855 52.381 0.00 0.00 0.00 3.25
3607 6153 2.863809 CCATGCCTCCCTTATTGGTAC 58.136 52.381 0.00 0.00 0.00 3.34
3608 6154 2.443255 CCATGCCTCCCTTATTGGTACT 59.557 50.000 0.00 0.00 0.00 2.73
3609 6155 3.496870 CCATGCCTCCCTTATTGGTACTC 60.497 52.174 0.00 0.00 0.00 2.59
3610 6156 2.124411 TGCCTCCCTTATTGGTACTCC 58.876 52.381 0.00 0.00 0.00 3.85
3611 6157 1.420514 GCCTCCCTTATTGGTACTCCC 59.579 57.143 0.00 0.00 0.00 4.30
3612 6158 2.964803 GCCTCCCTTATTGGTACTCCCT 60.965 54.545 0.00 0.00 0.00 4.20
3613 6159 2.973406 CCTCCCTTATTGGTACTCCCTC 59.027 54.545 0.00 0.00 0.00 4.30
3614 6160 2.973406 CTCCCTTATTGGTACTCCCTCC 59.027 54.545 0.00 0.00 0.00 4.30
3615 6161 1.692519 CCCTTATTGGTACTCCCTCCG 59.307 57.143 0.00 0.00 0.00 4.63
3616 6162 2.395619 CCTTATTGGTACTCCCTCCGT 58.604 52.381 0.00 0.00 0.00 4.69
3617 6163 3.569491 CCTTATTGGTACTCCCTCCGTA 58.431 50.000 0.00 0.00 0.00 4.02
3618 6164 3.962718 CCTTATTGGTACTCCCTCCGTAA 59.037 47.826 0.00 0.00 0.00 3.18
3619 6165 4.406649 CCTTATTGGTACTCCCTCCGTAAA 59.593 45.833 0.00 0.00 0.00 2.01
3620 6166 5.452917 CCTTATTGGTACTCCCTCCGTAAAG 60.453 48.000 0.00 0.00 0.00 1.85
3621 6167 2.905415 TGGTACTCCCTCCGTAAAGA 57.095 50.000 0.00 0.00 0.00 2.52
3622 6168 3.173953 TGGTACTCCCTCCGTAAAGAA 57.826 47.619 0.00 0.00 0.00 2.52
3623 6169 3.509442 TGGTACTCCCTCCGTAAAGAAA 58.491 45.455 0.00 0.00 0.00 2.52
3624 6170 4.098894 TGGTACTCCCTCCGTAAAGAAAT 58.901 43.478 0.00 0.00 0.00 2.17
3625 6171 5.271598 TGGTACTCCCTCCGTAAAGAAATA 58.728 41.667 0.00 0.00 0.00 1.40
3626 6172 5.901276 TGGTACTCCCTCCGTAAAGAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
3627 6173 7.068702 TGGTACTCCCTCCGTAAAGAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
3628 6174 7.564660 TGGTACTCCCTCCGTAAAGAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
3629 6175 8.087136 GGTACTCCCTCCGTAAAGAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
3630 6176 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3631 6177 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3632 6178 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3633 6179 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3634 6180 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3635 6181 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3636 6182 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3637 6183 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3638 6184 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3639 6185 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3650 6196 6.952935 AAGAGCGTTTAGATCACTACTTTG 57.047 37.500 0.00 0.00 37.82 2.77
3651 6197 5.411781 AGAGCGTTTAGATCACTACTTTGG 58.588 41.667 0.00 0.00 37.82 3.28
3652 6198 5.047235 AGAGCGTTTAGATCACTACTTTGGT 60.047 40.000 0.00 0.00 37.82 3.67
3653 6199 4.929808 AGCGTTTAGATCACTACTTTGGTG 59.070 41.667 0.00 0.00 36.17 4.17
3654 6200 4.927425 GCGTTTAGATCACTACTTTGGTGA 59.073 41.667 0.00 0.00 45.84 4.02
3663 6209 6.985188 TCACTACTTTGGTGATCTAAATGC 57.015 37.500 0.00 0.00 38.57 3.56
3664 6210 6.711277 TCACTACTTTGGTGATCTAAATGCT 58.289 36.000 0.00 0.00 38.57 3.79
3665 6211 6.818644 TCACTACTTTGGTGATCTAAATGCTC 59.181 38.462 0.00 0.00 38.57 4.26
3666 6212 6.820656 CACTACTTTGGTGATCTAAATGCTCT 59.179 38.462 0.00 0.00 36.89 4.09
3667 6213 7.335422 CACTACTTTGGTGATCTAAATGCTCTT 59.665 37.037 0.00 0.00 36.89 2.85
3668 6214 8.540388 ACTACTTTGGTGATCTAAATGCTCTTA 58.460 33.333 0.00 0.00 0.00 2.10
3669 6215 9.553064 CTACTTTGGTGATCTAAATGCTCTTAT 57.447 33.333 0.00 0.00 0.00 1.73
3685 6231 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
3799 6346 9.482175 AGTTTCCGATATATTATCCTAGCTCTT 57.518 33.333 0.00 0.00 0.00 2.85
3844 6392 6.716628 AGGTTTTGACTGATTTAGCTTCATCA 59.283 34.615 0.00 0.00 0.00 3.07
3852 6400 6.260493 ACTGATTTAGCTTCATCATGAGCTTC 59.740 38.462 11.91 5.47 34.44 3.86
3857 6406 2.349627 GCTTCATCATGAGCTTCGATGC 60.350 50.000 15.04 15.04 37.14 3.91
3888 6437 4.021719 GCCTGCCAATAGATGTATGCAAAT 60.022 41.667 0.00 0.00 0.00 2.32
4040 6589 7.147776 CCTTTCCCAGATCTAATTTTGCATCTT 60.148 37.037 0.00 0.00 0.00 2.40
4318 6868 3.545366 TGGTGTTGTAGTGTGTTGCTA 57.455 42.857 0.00 0.00 0.00 3.49
4338 6888 6.600388 TGCTATCTTACAAATGGGAGCATTA 58.400 36.000 0.00 0.00 33.95 1.90
4479 7029 0.320247 ACAGCAACTCTTGAGGCGAG 60.320 55.000 2.55 0.00 34.70 5.03
4506 7056 3.382546 ACTGGCATCATAATGTTTGAGCC 59.617 43.478 0.00 0.00 37.64 4.70
4524 7074 4.578928 TGAGCCCTTAAACTTCTGTGAAAC 59.421 41.667 0.00 0.00 37.35 2.78
4558 7108 1.252175 GCTGGAGAGCGGAGATGATA 58.748 55.000 0.00 0.00 34.87 2.15
4562 7112 2.225117 TGGAGAGCGGAGATGATATCCA 60.225 50.000 6.93 0.00 36.57 3.41
4567 7117 3.993081 GAGCGGAGATGATATCCAAACAG 59.007 47.826 6.93 0.00 36.57 3.16
4601 7151 3.857157 AGGGTTCTGCTTTGTAGTTGA 57.143 42.857 0.00 0.00 0.00 3.18
4632 7182 6.239217 TGATGCAGGATGAACTACTGTTAT 57.761 37.500 0.00 0.00 39.69 1.89
4635 7185 8.264347 TGATGCAGGATGAACTACTGTTATAAA 58.736 33.333 0.00 0.00 39.69 1.40
4638 7188 8.264347 TGCAGGATGAACTACTGTTATAAATGA 58.736 33.333 0.00 0.00 39.69 2.57
4676 7396 7.222180 TCTTTCTTCCTACATAGACTCCCTA 57.778 40.000 0.00 0.00 0.00 3.53
4694 7414 6.774656 ACTCCCTATAAATCCATTTTCTGCAG 59.225 38.462 7.63 7.63 0.00 4.41
4701 7422 5.934935 AATCCATTTTCTGCAGCAAAAAG 57.065 34.783 15.43 14.75 0.00 2.27
4763 7484 1.490490 ACAGCCAGTTTCCTCACTTCA 59.510 47.619 0.00 0.00 0.00 3.02
4774 7495 8.571336 CAGTTTCCTCACTTCAATATGAAAGTT 58.429 33.333 1.25 0.00 35.73 2.66
4778 7499 8.099364 TCCTCACTTCAATATGAAAGTTTGAC 57.901 34.615 0.00 0.00 35.73 3.18
4811 7532 2.571653 TGCAGTGCCAACTATTACCTCT 59.428 45.455 13.72 0.00 33.79 3.69
4828 7549 8.706322 ATTACCTCTGTTTGAACTAAAACCAT 57.294 30.769 0.00 0.00 38.93 3.55
4829 7550 8.528044 TTACCTCTGTTTGAACTAAAACCATT 57.472 30.769 0.00 0.00 38.93 3.16
4845 7566 6.850752 AAACCATTCCAGTTATTTCCGAAT 57.149 33.333 0.00 0.00 0.00 3.34
4846 7567 6.850752 AACCATTCCAGTTATTTCCGAATT 57.149 33.333 0.00 0.00 0.00 2.17
4877 7598 3.694566 ACAACCAGTTTCCTCACTTTCAC 59.305 43.478 0.00 0.00 0.00 3.18
4925 7650 9.801873 TTTCTAAGCTTTATTTGAACCATATGC 57.198 29.630 3.20 0.00 0.00 3.14
4941 7666 5.163488 ACCATATGCCATGTGTTTGATCTTG 60.163 40.000 0.00 0.00 0.00 3.02
5082 7837 9.355215 GTTCAAAGTCGTATGAAGAAATAGAGA 57.645 33.333 0.00 0.00 36.31 3.10
5119 7874 2.224305 GGGAAGTTGTATCGGGGATCTG 60.224 54.545 0.00 0.00 0.00 2.90
5125 7880 4.468510 AGTTGTATCGGGGATCTGTTACAA 59.531 41.667 0.00 3.31 39.87 2.41
5137 7894 5.470098 GGATCTGTTACAACAACACATCTGT 59.530 40.000 5.69 0.00 38.66 3.41
5138 7895 5.733226 TCTGTTACAACAACACATCTGTG 57.267 39.130 8.74 8.74 41.91 3.66
5185 7942 7.164803 AGAGCCTTGATAAGCATTTATAGGAC 58.835 38.462 0.00 0.00 31.01 3.85
5219 7976 1.153549 CCGCTGGAGGTGCTCTTAC 60.154 63.158 0.00 0.00 0.00 2.34
5220 7977 1.591703 CGCTGGAGGTGCTCTTACA 59.408 57.895 0.00 0.00 0.00 2.41
5223 7980 1.825474 GCTGGAGGTGCTCTTACACTA 59.175 52.381 0.00 0.00 40.52 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.796459 CGACCGAACCGAATTGTTTCT 59.204 47.619 0.00 0.00 0.00 2.52
68 69 2.583593 GCGAGTGATCAGCCGACC 60.584 66.667 17.70 0.00 0.00 4.79
72 73 3.558411 GTGCGCGAGTGATCAGCC 61.558 66.667 12.10 0.00 0.00 4.85
110 117 7.283807 ACGTGTAACCCTTTGAGATAACTTTTT 59.716 33.333 0.00 0.00 0.00 1.94
157 164 2.447408 TAAGGCTACTCATCCCACGA 57.553 50.000 0.00 0.00 0.00 4.35
165 172 3.958147 TGACGAATGGATAAGGCTACTCA 59.042 43.478 0.00 0.00 0.00 3.41
169 176 3.746045 GGTGACGAATGGATAAGGCTA 57.254 47.619 0.00 0.00 0.00 3.93
192 199 3.026694 GGGATTGGGATTGAGGACAAAG 58.973 50.000 0.00 0.00 39.54 2.77
195 202 1.679981 TGGGATTGGGATTGAGGACA 58.320 50.000 0.00 0.00 0.00 4.02
196 203 2.826674 TTGGGATTGGGATTGAGGAC 57.173 50.000 0.00 0.00 0.00 3.85
197 204 2.177669 GGATTGGGATTGGGATTGAGGA 59.822 50.000 0.00 0.00 0.00 3.71
198 205 2.601905 GGATTGGGATTGGGATTGAGG 58.398 52.381 0.00 0.00 0.00 3.86
199 206 2.601905 GGGATTGGGATTGGGATTGAG 58.398 52.381 0.00 0.00 0.00 3.02
200 207 1.220236 GGGGATTGGGATTGGGATTGA 59.780 52.381 0.00 0.00 0.00 2.57
201 208 1.062275 TGGGGATTGGGATTGGGATTG 60.062 52.381 0.00 0.00 0.00 2.67
202 209 1.328103 TGGGGATTGGGATTGGGATT 58.672 50.000 0.00 0.00 0.00 3.01
203 210 1.150560 CATGGGGATTGGGATTGGGAT 59.849 52.381 0.00 0.00 0.00 3.85
204 211 0.562177 CATGGGGATTGGGATTGGGA 59.438 55.000 0.00 0.00 0.00 4.37
226 233 7.382898 AGGGACGTTTGCAACATAATTATTTT 58.617 30.769 0.00 0.00 0.00 1.82
230 237 4.396790 GGAGGGACGTTTGCAACATAATTA 59.603 41.667 0.00 0.00 0.00 1.40
232 239 2.752903 GGAGGGACGTTTGCAACATAAT 59.247 45.455 0.00 0.00 0.00 1.28
245 252 2.434336 TGGATGTTATTGAGGAGGGACG 59.566 50.000 0.00 0.00 0.00 4.79
264 271 6.607735 ATGTCTTTTTCTTTTGCAACATGG 57.392 33.333 0.00 0.00 0.00 3.66
354 366 5.278266 CGGAAGGACTTTTGCAACAAGAATA 60.278 40.000 20.80 0.00 0.00 1.75
405 417 9.801714 GATTGTGTTGCAATTTTCTTATCTTTG 57.198 29.630 0.59 0.00 46.90 2.77
406 418 9.768662 AGATTGTGTTGCAATTTTCTTATCTTT 57.231 25.926 0.59 0.00 46.90 2.52
414 426 7.653523 CAACAAAGATTGTGTTGCAATTTTC 57.346 32.000 0.59 0.00 46.63 2.29
448 462 2.963101 TGCGACATAGGCCTTACTGTAT 59.037 45.455 12.58 0.00 0.00 2.29
458 472 1.132453 GAACCCTTTTGCGACATAGGC 59.868 52.381 0.00 0.00 0.00 3.93
485 500 3.937706 TGTTTTCACAATTGCAAAGGTGG 59.062 39.130 24.78 12.46 36.20 4.61
539 562 9.857957 TTTTTAAAAGATAAAAATATCCGCCGT 57.142 25.926 0.14 0.00 33.17 5.68
570 593 1.391933 ATGCTATGAGTCGGTCGGCA 61.392 55.000 0.00 0.00 34.06 5.69
571 594 0.941463 CATGCTATGAGTCGGTCGGC 60.941 60.000 0.00 0.00 0.00 5.54
592 615 4.142403 GCGAGGATGACAATTTTCATTGGA 60.142 41.667 8.44 0.00 43.82 3.53
594 617 3.787634 CGCGAGGATGACAATTTTCATTG 59.212 43.478 8.44 1.82 44.90 2.82
597 620 2.415168 GTCGCGAGGATGACAATTTTCA 59.585 45.455 10.24 0.00 35.20 2.69
652 690 8.211198 AGAATTTCGCTACAAATTAAACGTTG 57.789 30.769 0.00 0.00 36.33 4.10
712 752 3.255888 ACTCGCTCTGTGTGATCTAAACA 59.744 43.478 0.00 0.00 34.35 2.83
730 2130 6.073222 AGTCAAAAGCACAAAATAGGTACTCG 60.073 38.462 0.00 0.00 41.75 4.18
756 2156 7.287696 ACACTTGAAAACAAGAGGGAATAACAT 59.712 33.333 15.32 0.00 36.16 2.71
825 3325 5.402630 AGGGGGTATTTGAGATTTTTGTGT 58.597 37.500 0.00 0.00 0.00 3.72
878 3379 2.546778 TGCGAGGGATTGTTTCGATAC 58.453 47.619 0.00 0.00 36.49 2.24
956 3457 1.362932 GGGGAGGGATAGATAGGAGCA 59.637 57.143 0.00 0.00 0.00 4.26
957 3458 1.686741 CGGGGAGGGATAGATAGGAGC 60.687 61.905 0.00 0.00 0.00 4.70
1173 3674 0.033011 TAGGAGGGGAGCAGAGACAC 60.033 60.000 0.00 0.00 0.00 3.67
1232 3733 1.067495 AGCACTAAGTCGAGCAACCTC 60.067 52.381 0.00 0.00 34.66 3.85
1299 3801 3.052082 CCTCCGCCACAGTGCAAG 61.052 66.667 0.00 0.00 0.00 4.01
1310 3812 3.567797 GATGAAGCACGCCTCCGC 61.568 66.667 0.00 0.00 38.22 5.54
1405 3913 0.719465 AAAACGCGCAAGGATAGTCG 59.281 50.000 5.73 0.00 38.28 4.18
1414 3922 0.317436 GACATCACCAAAACGCGCAA 60.317 50.000 5.73 0.00 0.00 4.85
1419 3927 3.435671 GGACCTAAGACATCACCAAAACG 59.564 47.826 0.00 0.00 0.00 3.60
1429 3937 1.623811 ACAGTTGCGGACCTAAGACAT 59.376 47.619 0.00 0.00 0.00 3.06
1444 3959 5.005740 TGAGCTAAATGAATGCAGACAGTT 58.994 37.500 11.87 11.87 0.00 3.16
1550 4067 9.685276 TCACACTATGTCCATTCTTTGATTAAT 57.315 29.630 0.00 0.00 0.00 1.40
1589 4108 8.806429 TTGAAATGCATCTTCTATTTCAGGTA 57.194 30.769 16.99 1.32 45.81 3.08
1600 4119 5.653507 TGTATTGGCTTGAAATGCATCTTC 58.346 37.500 0.00 7.13 39.01 2.87
1623 4142 3.587061 TGACATGACACCCTAATCAGGTT 59.413 43.478 0.00 0.00 39.77 3.50
1705 4224 6.426328 AGACTGTGAAAAGAGCATTCTTACAG 59.574 38.462 12.29 12.29 45.05 2.74
1815 4334 6.656693 AGATGCCCACTTATAATGTTCTATGC 59.343 38.462 0.00 0.00 0.00 3.14
1823 4342 8.859090 TGGAAAATAAGATGCCCACTTATAATG 58.141 33.333 0.00 0.00 38.91 1.90
1828 4347 5.826643 ACTGGAAAATAAGATGCCCACTTA 58.173 37.500 0.00 0.00 34.93 2.24
1835 4354 4.866486 CAGCCAAACTGGAAAATAAGATGC 59.134 41.667 0.00 0.00 40.96 3.91
1837 4356 4.527816 TGCAGCCAAACTGGAAAATAAGAT 59.472 37.500 0.00 0.00 44.73 2.40
1839 4358 4.255833 TGCAGCCAAACTGGAAAATAAG 57.744 40.909 0.00 0.00 44.73 1.73
1848 4370 4.051799 TACTCAGAAGTGCAGCCAAACTG 61.052 47.826 0.00 0.00 42.12 3.16
1866 4388 6.241385 GCGTGACAACAAATCTTGTATACTC 58.759 40.000 4.17 0.00 44.59 2.59
1874 4396 0.591170 CGGGCGTGACAACAAATCTT 59.409 50.000 0.00 0.00 0.00 2.40
1885 4407 1.002201 TCCATTCTAAAACGGGCGTGA 59.998 47.619 0.00 0.00 0.00 4.35
1887 4409 2.188062 TTCCATTCTAAAACGGGCGT 57.812 45.000 0.00 0.00 0.00 5.68
1892 4414 6.751888 GTCCCATCAAATTCCATTCTAAAACG 59.248 38.462 0.00 0.00 0.00 3.60
1899 4421 5.520376 AATCGTCCCATCAAATTCCATTC 57.480 39.130 0.00 0.00 0.00 2.67
1967 4491 2.833794 TGGAGTTCAGGTTTCTTGACG 58.166 47.619 0.00 0.00 0.00 4.35
2002 4526 3.264193 TGCTTGACTTACCCATGACTGAT 59.736 43.478 0.00 0.00 0.00 2.90
2029 4561 8.362639 ACACAGCAATTCAACTTTATCAGATTT 58.637 29.630 0.00 0.00 0.00 2.17
2045 4577 4.595762 AGAGCATTCAAACACAGCAATT 57.404 36.364 0.00 0.00 0.00 2.32
2050 4582 6.651755 AAAAACAAGAGCATTCAAACACAG 57.348 33.333 0.00 0.00 0.00 3.66
2149 4681 7.282224 TCCAATATTGATAGTTGTTGGTGTAGC 59.718 37.037 17.23 0.00 37.82 3.58
2155 4687 6.698008 TGCTCCAATATTGATAGTTGTTGG 57.302 37.500 17.23 0.00 37.91 3.77
2156 4688 9.590451 AAAATGCTCCAATATTGATAGTTGTTG 57.410 29.630 17.23 0.00 0.00 3.33
2157 4689 9.807649 GAAAATGCTCCAATATTGATAGTTGTT 57.192 29.630 17.23 7.28 0.00 2.83
2161 4694 7.807977 ACGAAAATGCTCCAATATTGATAGT 57.192 32.000 17.23 0.00 0.00 2.12
2173 4706 9.134734 TGAAAAATATAACAACGAAAATGCTCC 57.865 29.630 0.00 0.00 0.00 4.70
2241 4776 2.158593 CCATCTAGGAGAAGGAGACGGA 60.159 54.545 0.00 0.00 35.17 4.69
2243 4778 2.158593 TCCCATCTAGGAGAAGGAGACG 60.159 54.545 0.00 0.00 35.17 4.18
2280 4815 2.029739 GCTTCTACGCCTCCTAGGAATC 60.030 54.545 13.77 6.40 37.67 2.52
2297 4832 1.144936 CTCGGTGATGGAGGGCTTC 59.855 63.158 0.00 0.00 0.00 3.86
2333 4868 0.394565 ACTTGAGCTGCTCCGACTTT 59.605 50.000 25.61 2.68 0.00 2.66
2406 4941 7.718334 TTCTTCTTCCTTCCTTTGTTTTTCT 57.282 32.000 0.00 0.00 0.00 2.52
2476 5011 1.477700 GCAGATGGCCATGCAAAACTA 59.522 47.619 26.56 0.00 42.11 2.24
2478 5013 0.248289 AGCAGATGGCCATGCAAAAC 59.752 50.000 28.45 12.29 46.50 2.43
2485 5020 1.452651 CGACCAAGCAGATGGCCAT 60.453 57.895 20.96 20.96 44.75 4.40
2531 5068 5.048504 AGGCAAACTGTCAATATGTGAGTTG 60.049 40.000 0.00 0.00 36.74 3.16
2554 5091 1.959042 AGACCACAGTTCAAGCACAG 58.041 50.000 0.00 0.00 0.00 3.66
2569 5109 9.528018 CAAGATAGAGAAGATTTGTAGAAGACC 57.472 37.037 0.00 0.00 0.00 3.85
2590 5130 5.763204 CCAACCACACTAGTACAAACAAGAT 59.237 40.000 0.00 0.00 0.00 2.40
2604 5144 3.370104 TCCATTTCAAACCAACCACACT 58.630 40.909 0.00 0.00 0.00 3.55
2605 5145 3.810310 TCCATTTCAAACCAACCACAC 57.190 42.857 0.00 0.00 0.00 3.82
2609 5149 5.819901 TGAACAAATCCATTTCAAACCAACC 59.180 36.000 0.00 0.00 0.00 3.77
2638 5178 3.030291 TGCAAGTTGGTCATCTTTTGGT 58.970 40.909 4.75 0.00 0.00 3.67
2673 5213 9.905713 TTTTATTGATATTAGTTCACAGCTCCT 57.094 29.630 0.00 0.00 0.00 3.69
2700 5240 9.790389 AAATTAAATACTTTTGAACGTGACACA 57.210 25.926 6.37 0.00 0.00 3.72
2729 5269 9.964354 CCTTGATGGATTGAGGATTAACATATA 57.036 33.333 0.00 0.00 38.35 0.86
2730 5270 8.672329 TCCTTGATGGATTGAGGATTAACATAT 58.328 33.333 0.00 0.00 40.56 1.78
2761 5301 3.963129 AGGAATGGCAAAAGATCCGTTA 58.037 40.909 0.00 0.00 35.31 3.18
2772 5312 7.014230 GCCAGTATAAAATAGAAGGAATGGCAA 59.986 37.037 6.10 0.00 45.85 4.52
2780 5320 8.778358 GTTGAGATGCCAGTATAAAATAGAAGG 58.222 37.037 0.00 0.00 0.00 3.46
2781 5321 9.553064 AGTTGAGATGCCAGTATAAAATAGAAG 57.447 33.333 0.00 0.00 0.00 2.85
2847 5387 1.004745 TCCTGGTCTTTTGGAGATGGC 59.995 52.381 0.00 0.00 36.61 4.40
2850 5390 2.982488 ACAGTCCTGGTCTTTTGGAGAT 59.018 45.455 0.00 0.00 36.61 2.75
2865 5405 3.990959 AGGAGATTTGGAGAACAGTCC 57.009 47.619 0.00 0.00 37.10 3.85
2866 5406 5.669164 AGTAGGAGATTTGGAGAACAGTC 57.331 43.478 0.00 0.00 0.00 3.51
2884 5424 4.817464 ACAGAGGCGTATACAGAGAAGTAG 59.183 45.833 3.32 0.00 0.00 2.57
2892 5432 3.717400 ACATGACAGAGGCGTATACAG 57.283 47.619 0.00 0.00 0.00 2.74
2901 5441 2.751166 ACGGAAGAACATGACAGAGG 57.249 50.000 0.00 0.00 0.00 3.69
2925 5465 6.480320 CCTGCAGGAACAATCTACAGTTATAC 59.520 42.308 29.88 0.00 37.39 1.47
2927 5467 5.045578 ACCTGCAGGAACAATCTACAGTTAT 60.046 40.000 39.19 7.29 38.94 1.89
2928 5468 4.286032 ACCTGCAGGAACAATCTACAGTTA 59.714 41.667 39.19 0.00 38.94 2.24
2929 5469 3.073062 ACCTGCAGGAACAATCTACAGTT 59.927 43.478 39.19 8.45 38.94 3.16
2933 5473 3.059352 ACACCTGCAGGAACAATCTAC 57.941 47.619 39.19 0.00 38.94 2.59
2941 5481 1.059584 TCTGGGAACACCTGCAGGAA 61.060 55.000 39.19 13.28 41.11 3.36
3021 5561 0.951558 GGAACAAACACCAGCGTGAT 59.048 50.000 0.00 0.00 43.14 3.06
3022 5562 0.107410 AGGAACAAACACCAGCGTGA 60.107 50.000 0.00 0.00 43.14 4.35
3023 5563 0.307760 GAGGAACAAACACCAGCGTG 59.692 55.000 0.00 0.00 46.11 5.34
3062 5602 8.484641 TGAGAGAGTTAGTTCATAAAATGCTG 57.515 34.615 0.00 0.00 0.00 4.41
3063 5603 9.678260 AATGAGAGAGTTAGTTCATAAAATGCT 57.322 29.630 0.00 0.00 30.53 3.79
3072 5612 8.246871 CACACAGATAATGAGAGAGTTAGTTCA 58.753 37.037 0.00 0.00 0.00 3.18
3102 5644 6.212955 CCAAAGTACAACTTGTAAATGTGGG 58.787 40.000 12.89 4.88 38.66 4.61
3119 5661 5.514274 CTTTGTCCAGAAAAGCCAAAGTA 57.486 39.130 0.00 0.00 37.99 2.24
3166 5708 4.507021 CACATATGCACTGCACAAACAAAA 59.493 37.500 5.67 0.00 43.04 2.44
3169 5711 2.622470 ACACATATGCACTGCACAAACA 59.378 40.909 5.67 0.00 43.04 2.83
3180 5722 7.121020 TCAAAATGAAGCTAAGACACATATGCA 59.879 33.333 1.58 0.00 0.00 3.96
3194 5736 8.064336 AGCATAGAAAAGATCAAAATGAAGCT 57.936 30.769 0.00 0.00 0.00 3.74
3204 5746 5.105023 AGTGAGCAGAGCATAGAAAAGATCA 60.105 40.000 0.00 0.00 0.00 2.92
3205 5747 5.358922 AGTGAGCAGAGCATAGAAAAGATC 58.641 41.667 0.00 0.00 0.00 2.75
3207 5749 4.815533 AGTGAGCAGAGCATAGAAAAGA 57.184 40.909 0.00 0.00 0.00 2.52
3208 5750 4.694509 ACAAGTGAGCAGAGCATAGAAAAG 59.305 41.667 0.00 0.00 0.00 2.27
3212 5754 3.969287 AACAAGTGAGCAGAGCATAGA 57.031 42.857 0.00 0.00 0.00 1.98
3213 5755 3.061831 CGAAACAAGTGAGCAGAGCATAG 59.938 47.826 0.00 0.00 0.00 2.23
3214 5756 2.995939 CGAAACAAGTGAGCAGAGCATA 59.004 45.455 0.00 0.00 0.00 3.14
3215 5757 1.802960 CGAAACAAGTGAGCAGAGCAT 59.197 47.619 0.00 0.00 0.00 3.79
3216 5758 1.202521 TCGAAACAAGTGAGCAGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
3217 5759 1.502231 TCGAAACAAGTGAGCAGAGC 58.498 50.000 0.00 0.00 0.00 4.09
3218 5760 4.328440 CCTAATCGAAACAAGTGAGCAGAG 59.672 45.833 0.00 0.00 0.00 3.35
3219 5761 4.245660 CCTAATCGAAACAAGTGAGCAGA 58.754 43.478 0.00 0.00 0.00 4.26
3220 5762 3.372206 CCCTAATCGAAACAAGTGAGCAG 59.628 47.826 0.00 0.00 0.00 4.24
3223 5765 4.811557 GGATCCCTAATCGAAACAAGTGAG 59.188 45.833 0.00 0.00 34.99 3.51
3243 5785 8.131100 CGATGTAACATTAATGAGCAAAAGGAT 58.869 33.333 22.16 2.17 0.00 3.24
3248 5790 7.201609 GGAGTCGATGTAACATTAATGAGCAAA 60.202 37.037 22.16 4.08 0.00 3.68
3265 5807 4.442375 ACTACAAGTGAAGGAGTCGATG 57.558 45.455 0.00 0.00 0.00 3.84
3311 5856 9.474313 TGTTAAGTTATAAAGGATTGATTGGCT 57.526 29.630 0.00 0.00 0.00 4.75
3322 5867 8.856247 GCGGTGAAAAATGTTAAGTTATAAAGG 58.144 33.333 0.00 0.00 0.00 3.11
3436 5982 4.768130 TTACTTCCTCAGAGTTCAGACG 57.232 45.455 0.00 0.00 0.00 4.18
3534 6080 1.096386 CATGGAGAGCTGCTGCCTTC 61.096 60.000 7.01 9.85 40.80 3.46
3538 6084 1.716826 GCTTCATGGAGAGCTGCTGC 61.717 60.000 7.01 7.62 40.05 5.25
3539 6085 1.096386 GGCTTCATGGAGAGCTGCTG 61.096 60.000 7.01 0.00 0.00 4.41
3587 6133 2.443255 AGTACCAATAAGGGAGGCATGG 59.557 50.000 0.00 0.00 43.89 3.66
3600 6146 3.716431 TCTTTACGGAGGGAGTACCAAT 58.284 45.455 0.00 0.00 43.89 3.16
3603 6149 4.750021 ATTTCTTTACGGAGGGAGTACC 57.250 45.455 0.00 0.00 40.67 3.34
3604 6150 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
3605 6151 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
3606 6152 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
3607 6153 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3608 6154 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3609 6155 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3610 6156 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3611 6157 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3612 6158 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3613 6159 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3624 6170 9.731819 CAAAGTAGTGATCTAAACGCTCTTATA 57.268 33.333 0.00 0.00 0.00 0.98
3625 6171 7.707035 CCAAAGTAGTGATCTAAACGCTCTTAT 59.293 37.037 0.00 0.00 0.00 1.73
3626 6172 7.033791 CCAAAGTAGTGATCTAAACGCTCTTA 58.966 38.462 0.00 0.00 0.00 2.10
3627 6173 5.869888 CCAAAGTAGTGATCTAAACGCTCTT 59.130 40.000 0.00 0.00 0.00 2.85
3628 6174 5.047235 ACCAAAGTAGTGATCTAAACGCTCT 60.047 40.000 0.00 0.00 0.00 4.09
3629 6175 5.062308 CACCAAAGTAGTGATCTAAACGCTC 59.938 44.000 0.00 0.00 37.42 5.03
3630 6176 4.929808 CACCAAAGTAGTGATCTAAACGCT 59.070 41.667 0.00 0.00 37.42 5.07
3631 6177 4.927425 TCACCAAAGTAGTGATCTAAACGC 59.073 41.667 0.00 0.00 39.29 4.84
3641 6187 6.820656 AGAGCATTTAGATCACCAAAGTAGTG 59.179 38.462 0.00 0.00 34.30 2.74
3642 6188 6.951971 AGAGCATTTAGATCACCAAAGTAGT 58.048 36.000 0.00 0.00 34.30 2.73
3643 6189 7.856145 AAGAGCATTTAGATCACCAAAGTAG 57.144 36.000 0.00 0.00 34.30 2.57
3659 6205 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
3660 6206 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
3661 6207 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
3662 6208 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3668 6214 9.939424 ACTAGTACTCCCTCTGTAAAGAAATAT 57.061 33.333 0.00 0.00 0.00 1.28
3669 6215 9.406113 GACTAGTACTCCCTCTGTAAAGAAATA 57.594 37.037 0.00 0.00 0.00 1.40
3670 6216 7.894364 TGACTAGTACTCCCTCTGTAAAGAAAT 59.106 37.037 0.00 0.00 0.00 2.17
3671 6217 7.236529 TGACTAGTACTCCCTCTGTAAAGAAA 58.763 38.462 0.00 0.00 0.00 2.52
3672 6218 6.787170 TGACTAGTACTCCCTCTGTAAAGAA 58.213 40.000 0.00 0.00 0.00 2.52
3673 6219 6.384342 TGACTAGTACTCCCTCTGTAAAGA 57.616 41.667 0.00 0.00 0.00 2.52
3674 6220 7.648039 AATGACTAGTACTCCCTCTGTAAAG 57.352 40.000 0.00 0.00 0.00 1.85
3675 6221 9.710818 AATAATGACTAGTACTCCCTCTGTAAA 57.289 33.333 0.00 0.00 0.00 2.01
3676 6222 9.710818 AAATAATGACTAGTACTCCCTCTGTAA 57.289 33.333 0.00 0.00 0.00 2.41
3678 6224 9.710818 TTAAATAATGACTAGTACTCCCTCTGT 57.289 33.333 0.00 0.00 0.00 3.41
3725 6271 3.567478 ATTCACTAGCTCCACCAATCC 57.433 47.619 0.00 0.00 0.00 3.01
3759 6305 4.261801 TCGGAAACTGATTTCATCCTTCC 58.738 43.478 2.48 0.00 45.26 3.46
3778 6325 9.968870 GGTTAAAGAGCTAGGATAATATATCGG 57.031 37.037 0.00 0.00 0.00 4.18
3814 6362 9.216117 GAAGCTAAATCAGTCAAAACCTAAGTA 57.784 33.333 0.00 0.00 0.00 2.24
3820 6368 6.913170 TGATGAAGCTAAATCAGTCAAAACC 58.087 36.000 7.07 0.00 0.00 3.27
3844 6392 3.136763 CACCAATAGCATCGAAGCTCAT 58.863 45.455 19.78 6.35 45.26 2.90
3852 6400 1.650912 GCAGGCACCAATAGCATCG 59.349 57.895 0.00 0.00 0.00 3.84
4318 6868 7.961326 AGTTTAATGCTCCCATTTGTAAGAT 57.039 32.000 0.00 0.00 41.68 2.40
4338 6888 0.887836 GAGGCGTCCCCGAAAAGTTT 60.888 55.000 0.00 0.00 39.21 2.66
4460 7010 0.320247 CTCGCCTCAAGAGTTGCTGT 60.320 55.000 0.00 0.00 0.00 4.40
4479 7029 7.439157 TCAAACATTATGATGCCAGTATAGC 57.561 36.000 0.00 0.00 36.72 2.97
4492 7042 7.756722 CAGAAGTTTAAGGGCTCAAACATTATG 59.243 37.037 2.70 0.00 37.16 1.90
4493 7043 7.451566 ACAGAAGTTTAAGGGCTCAAACATTAT 59.548 33.333 2.70 0.00 37.16 1.28
4558 7108 3.330701 AGTCCATGGTGTACTGTTTGGAT 59.669 43.478 12.58 0.86 35.82 3.41
4562 7112 3.263425 CCCTAGTCCATGGTGTACTGTTT 59.737 47.826 12.58 0.00 0.00 2.83
4567 7117 3.105283 AGAACCCTAGTCCATGGTGTAC 58.895 50.000 12.58 2.35 31.32 2.90
4601 7151 3.639672 TCATCCTGCATCAAGACACAT 57.360 42.857 0.00 0.00 0.00 3.21
4632 7182 6.418057 AAGAAAGTGCCCAATTGTCATTTA 57.582 33.333 4.43 0.00 0.00 1.40
4635 7185 4.590222 AGAAAGAAAGTGCCCAATTGTCAT 59.410 37.500 4.43 0.00 0.00 3.06
4638 7188 4.202253 GGAAGAAAGAAAGTGCCCAATTGT 60.202 41.667 4.43 0.00 0.00 2.71
4676 7396 7.879160 TCTTTTTGCTGCAGAAAATGGATTTAT 59.121 29.630 20.69 0.00 0.00 1.40
4694 7414 2.434336 AGGTTTCTGGGGTTCTTTTTGC 59.566 45.455 0.00 0.00 0.00 3.68
4701 7422 2.963599 TGGTTAGGTTTCTGGGGTTC 57.036 50.000 0.00 0.00 0.00 3.62
4774 7495 4.422840 CACTGCAACTTCATTTGTGTCAA 58.577 39.130 0.00 0.00 0.00 3.18
4778 7499 2.129607 GGCACTGCAACTTCATTTGTG 58.870 47.619 2.82 0.00 0.00 3.33
4811 7532 6.783708 ACTGGAATGGTTTTAGTTCAAACA 57.216 33.333 0.00 0.00 38.25 2.83
4828 7549 4.947388 CCCTCAATTCGGAAATAACTGGAA 59.053 41.667 0.00 0.00 0.00 3.53
4829 7550 4.226394 TCCCTCAATTCGGAAATAACTGGA 59.774 41.667 0.00 0.00 0.00 3.86
4845 7566 3.181448 GGAAACTGGTTGTACTCCCTCAA 60.181 47.826 0.00 0.00 0.00 3.02
4846 7567 2.370849 GGAAACTGGTTGTACTCCCTCA 59.629 50.000 0.00 0.00 0.00 3.86
4877 7598 8.242053 AGAAATCAAACATAAAGCATCACTCTG 58.758 33.333 0.00 0.00 0.00 3.35
4920 7645 6.778834 TTCAAGATCAAACACATGGCATAT 57.221 33.333 0.00 0.00 0.00 1.78
4925 7650 6.684686 AGACAATTCAAGATCAAACACATGG 58.315 36.000 0.00 0.00 0.00 3.66
4941 7666 8.090214 TCCAAGATCAAAATTCCAAGACAATTC 58.910 33.333 0.00 0.00 0.00 2.17
5119 7874 6.636850 GGATTTCACAGATGTGTTGTTGTAAC 59.363 38.462 12.43 0.00 45.76 2.50
5125 7880 7.523293 TTATTGGATTTCACAGATGTGTTGT 57.477 32.000 12.43 0.52 45.76 3.32
5185 7942 3.184986 CCAGCGGCTTTTCAAAAATCTTG 59.815 43.478 0.00 0.00 0.00 3.02
5219 7976 5.416083 TGATAATTCCCGTTGTGACTAGTG 58.584 41.667 0.00 0.00 0.00 2.74
5220 7977 5.670792 TGATAATTCCCGTTGTGACTAGT 57.329 39.130 0.00 0.00 0.00 2.57
5223 7980 9.219603 CAATATATGATAATTCCCGTTGTGACT 57.780 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.