Multiple sequence alignment - TraesCS4A01G014400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G014400 chr4A 100.000 2381 0 0 1 2381 9373674 9376054 0.000000e+00 4397
1 TraesCS4A01G014400 chr4D 90.927 1488 56 29 326 1771 459436426 459434976 0.000000e+00 1927
2 TraesCS4A01G014400 chr4D 92.827 237 12 5 2086 2318 459434738 459434503 2.930000e-89 339
3 TraesCS4A01G014400 chr4D 93.981 216 11 1 1844 2057 459434953 459434738 2.280000e-85 326
4 TraesCS4A01G014400 chr4B 90.152 1452 75 35 366 1771 574234436 574233007 0.000000e+00 1827
5 TraesCS4A01G014400 chr4B 91.875 320 22 2 2065 2381 574230280 574229962 6.040000e-121 444
6 TraesCS4A01G014400 chr4B 96.916 227 5 1 1844 2068 574232984 574232758 1.730000e-101 379
7 TraesCS4A01G014400 chr7D 91.532 248 20 1 1 247 164758820 164759067 8.150000e-90 340
8 TraesCS4A01G014400 chr7D 91.129 248 21 1 1 247 579636098 579636345 3.790000e-88 335
9 TraesCS4A01G014400 chr1D 91.532 248 20 1 1 247 452250330 452250577 8.150000e-90 340
10 TraesCS4A01G014400 chr5D 91.129 248 20 2 1 247 454029756 454029510 3.790000e-88 335
11 TraesCS4A01G014400 chr5D 90.726 248 22 1 1 247 545306834 545307081 1.760000e-86 329
12 TraesCS4A01G014400 chr3D 91.129 248 21 1 1 247 365176030 365175783 3.790000e-88 335
13 TraesCS4A01G014400 chr3B 90.837 251 20 3 1 249 59735428 59735677 1.360000e-87 333
14 TraesCS4A01G014400 chr2D 91.093 247 21 1 1 246 246624099 246624345 1.360000e-87 333
15 TraesCS4A01G014400 chr2D 90.763 249 21 2 1 247 246550285 246550533 4.910000e-87 331


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G014400 chr4A 9373674 9376054 2380 False 4397.000000 4397 100.000000 1 2381 1 chr4A.!!$F1 2380
1 TraesCS4A01G014400 chr4D 459434503 459436426 1923 True 864.000000 1927 92.578333 326 2318 3 chr4D.!!$R1 1992
2 TraesCS4A01G014400 chr4B 574229962 574234436 4474 True 883.333333 1827 92.981000 366 2381 3 chr4B.!!$R1 2015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.025001 GACGCGATGAATTCACGGTG 59.975 55.0 15.93 19.46 34.21 4.94 F
79 80 0.103390 TCACGGTGAAAGCAGTTCGA 59.897 50.0 8.68 0.00 39.30 3.71 F
213 214 0.108138 CCACGGGAGTTGGAGTGATC 60.108 60.0 0.00 0.00 44.67 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1305 0.463295 TCCAGTACTCGTAGCCCTCG 60.463 60.0 0.00 0.0 0.00 4.63 R
1286 1349 0.759436 ATACCTGCTGTAGACCCCGG 60.759 60.0 0.00 0.0 31.61 5.73 R
2081 4678 0.467290 AGCTGAGAGACTCCGGATCC 60.467 60.0 3.57 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.647143 AAAGTTTGTGAAAACCTATCAACATG 57.353 30.769 0.00 0.00 33.28 3.21
27 28 6.748132 AGTTTGTGAAAACCTATCAACATGG 58.252 36.000 0.00 0.00 33.28 3.66
28 29 5.720371 TTGTGAAAACCTATCAACATGGG 57.280 39.130 0.00 0.00 36.68 4.00
29 30 4.991776 TGTGAAAACCTATCAACATGGGA 58.008 39.130 0.00 0.00 34.16 4.37
30 31 5.579047 TGTGAAAACCTATCAACATGGGAT 58.421 37.500 0.00 2.37 34.16 3.85
31 32 5.652014 TGTGAAAACCTATCAACATGGGATC 59.348 40.000 5.52 0.00 34.16 3.36
32 33 5.888161 GTGAAAACCTATCAACATGGGATCT 59.112 40.000 5.52 0.00 34.16 2.75
33 34 7.054124 GTGAAAACCTATCAACATGGGATCTA 58.946 38.462 5.52 0.00 34.16 1.98
34 35 7.556275 GTGAAAACCTATCAACATGGGATCTAA 59.444 37.037 5.52 0.00 34.16 2.10
35 36 8.281531 TGAAAACCTATCAACATGGGATCTAAT 58.718 33.333 5.52 0.00 34.16 1.73
36 37 9.136323 GAAAACCTATCAACATGGGATCTAATT 57.864 33.333 5.52 0.00 34.16 1.40
37 38 9.492730 AAAACCTATCAACATGGGATCTAATTT 57.507 29.630 5.52 2.95 34.16 1.82
38 39 9.492730 AAACCTATCAACATGGGATCTAATTTT 57.507 29.630 5.52 0.00 34.16 1.82
39 40 8.469309 ACCTATCAACATGGGATCTAATTTTG 57.531 34.615 5.52 0.00 34.16 2.44
40 41 8.281531 ACCTATCAACATGGGATCTAATTTTGA 58.718 33.333 5.52 10.25 34.16 2.69
41 42 9.135189 CCTATCAACATGGGATCTAATTTTGAA 57.865 33.333 11.28 4.39 32.06 2.69
45 46 9.874205 TCAACATGGGATCTAATTTTGAAAATC 57.126 29.630 3.32 0.00 0.00 2.17
46 47 9.880157 CAACATGGGATCTAATTTTGAAAATCT 57.120 29.630 3.32 0.00 0.00 2.40
48 49 8.408601 ACATGGGATCTAATTTTGAAAATCTCG 58.591 33.333 3.32 0.00 0.00 4.04
49 50 8.623903 CATGGGATCTAATTTTGAAAATCTCGA 58.376 33.333 3.32 1.96 0.00 4.04
50 51 7.985476 TGGGATCTAATTTTGAAAATCTCGAC 58.015 34.615 3.32 0.00 0.00 4.20
51 52 7.126398 GGGATCTAATTTTGAAAATCTCGACG 58.874 38.462 3.32 0.00 0.00 5.12
52 53 6.629252 GGATCTAATTTTGAAAATCTCGACGC 59.371 38.462 3.32 0.00 0.00 5.19
53 54 5.547341 TCTAATTTTGAAAATCTCGACGCG 58.453 37.500 3.53 3.53 0.00 6.01
54 55 4.398549 AATTTTGAAAATCTCGACGCGA 57.601 36.364 15.93 0.00 0.00 5.87
55 56 4.600012 ATTTTGAAAATCTCGACGCGAT 57.400 36.364 15.93 0.00 34.61 4.58
56 57 3.368321 TTTGAAAATCTCGACGCGATG 57.632 42.857 15.93 4.17 34.61 3.84
57 58 2.271821 TGAAAATCTCGACGCGATGA 57.728 45.000 15.93 9.21 34.61 2.92
58 59 2.601804 TGAAAATCTCGACGCGATGAA 58.398 42.857 15.93 1.63 34.61 2.57
59 60 3.186909 TGAAAATCTCGACGCGATGAAT 58.813 40.909 15.93 3.93 34.61 2.57
60 61 3.616821 TGAAAATCTCGACGCGATGAATT 59.383 39.130 15.93 9.46 34.61 2.17
61 62 3.843426 AAATCTCGACGCGATGAATTC 57.157 42.857 15.93 0.00 34.61 2.17
62 63 2.492019 ATCTCGACGCGATGAATTCA 57.508 45.000 15.93 11.26 34.61 2.57
63 64 1.545759 TCTCGACGCGATGAATTCAC 58.454 50.000 15.93 4.22 34.61 3.18
64 65 0.224746 CTCGACGCGATGAATTCACG 59.775 55.000 15.93 16.51 34.61 4.35
65 66 1.137459 TCGACGCGATGAATTCACGG 61.137 55.000 15.93 14.68 34.21 4.94
66 67 1.410737 CGACGCGATGAATTCACGGT 61.411 55.000 15.93 19.31 34.21 4.83
67 68 0.025001 GACGCGATGAATTCACGGTG 59.975 55.000 15.93 19.46 34.21 4.94
68 69 0.389296 ACGCGATGAATTCACGGTGA 60.389 50.000 15.93 6.76 34.21 4.02
69 70 0.718904 CGCGATGAATTCACGGTGAA 59.281 50.000 24.32 24.32 41.09 3.18
70 71 1.127766 CGCGATGAATTCACGGTGAAA 59.872 47.619 25.64 11.50 40.12 2.69
71 72 2.774007 GCGATGAATTCACGGTGAAAG 58.226 47.619 25.64 14.02 40.12 2.62
72 73 2.774007 CGATGAATTCACGGTGAAAGC 58.226 47.619 25.64 19.73 40.12 3.51
73 74 2.159430 CGATGAATTCACGGTGAAAGCA 59.841 45.455 25.64 23.84 40.12 3.91
74 75 3.725895 CGATGAATTCACGGTGAAAGCAG 60.726 47.826 25.64 12.43 40.12 4.24
75 76 2.571212 TGAATTCACGGTGAAAGCAGT 58.429 42.857 25.64 7.81 40.12 4.40
76 77 2.948979 TGAATTCACGGTGAAAGCAGTT 59.051 40.909 25.64 15.56 40.12 3.16
77 78 3.003275 TGAATTCACGGTGAAAGCAGTTC 59.997 43.478 25.64 22.15 40.12 3.01
78 79 0.934496 TTCACGGTGAAAGCAGTTCG 59.066 50.000 20.52 0.00 39.30 3.95
79 80 0.103390 TCACGGTGAAAGCAGTTCGA 59.897 50.000 8.68 0.00 39.30 3.71
80 81 0.508641 CACGGTGAAAGCAGTTCGAG 59.491 55.000 0.74 0.00 39.30 4.04
81 82 0.387929 ACGGTGAAAGCAGTTCGAGA 59.612 50.000 0.00 0.00 39.30 4.04
82 83 1.000955 ACGGTGAAAGCAGTTCGAGAT 59.999 47.619 0.00 0.00 39.30 2.75
83 84 2.069273 CGGTGAAAGCAGTTCGAGATT 58.931 47.619 0.00 0.00 39.30 2.40
84 85 2.480419 CGGTGAAAGCAGTTCGAGATTT 59.520 45.455 0.00 0.00 39.30 2.17
85 86 3.665323 CGGTGAAAGCAGTTCGAGATTTG 60.665 47.826 0.00 0.00 39.30 2.32
86 87 3.365364 GGTGAAAGCAGTTCGAGATTTGG 60.365 47.826 0.00 0.00 39.30 3.28
87 88 3.498397 GTGAAAGCAGTTCGAGATTTGGA 59.502 43.478 0.00 0.00 39.30 3.53
88 89 4.024048 GTGAAAGCAGTTCGAGATTTGGAA 60.024 41.667 0.00 0.00 39.30 3.53
89 90 4.214119 TGAAAGCAGTTCGAGATTTGGAAG 59.786 41.667 0.00 0.00 39.30 3.46
90 91 2.079925 AGCAGTTCGAGATTTGGAAGC 58.920 47.619 0.00 0.00 0.00 3.86
91 92 1.806542 GCAGTTCGAGATTTGGAAGCA 59.193 47.619 0.00 0.00 0.00 3.91
92 93 2.226437 GCAGTTCGAGATTTGGAAGCAA 59.774 45.455 0.00 0.00 0.00 3.91
93 94 3.669023 GCAGTTCGAGATTTGGAAGCAAG 60.669 47.826 0.00 0.00 0.00 4.01
94 95 3.077359 AGTTCGAGATTTGGAAGCAAGG 58.923 45.455 0.00 0.00 0.00 3.61
95 96 2.814336 GTTCGAGATTTGGAAGCAAGGT 59.186 45.455 0.00 0.00 0.00 3.50
96 97 3.140325 TCGAGATTTGGAAGCAAGGTT 57.860 42.857 0.00 0.00 0.00 3.50
97 98 3.486383 TCGAGATTTGGAAGCAAGGTTT 58.514 40.909 0.00 0.00 0.00 3.27
98 99 3.253188 TCGAGATTTGGAAGCAAGGTTTG 59.747 43.478 0.00 0.00 0.00 2.93
99 100 3.253188 CGAGATTTGGAAGCAAGGTTTGA 59.747 43.478 0.00 0.00 0.00 2.69
100 101 4.614535 CGAGATTTGGAAGCAAGGTTTGAG 60.615 45.833 0.00 0.00 0.00 3.02
101 102 4.473444 AGATTTGGAAGCAAGGTTTGAGA 58.527 39.130 0.00 0.00 0.00 3.27
102 103 4.522022 AGATTTGGAAGCAAGGTTTGAGAG 59.478 41.667 0.00 0.00 0.00 3.20
103 104 3.576078 TTGGAAGCAAGGTTTGAGAGA 57.424 42.857 0.00 0.00 0.00 3.10
104 105 3.795688 TGGAAGCAAGGTTTGAGAGAT 57.204 42.857 0.00 0.00 0.00 2.75
105 106 4.908601 TGGAAGCAAGGTTTGAGAGATA 57.091 40.909 0.00 0.00 0.00 1.98
106 107 5.241403 TGGAAGCAAGGTTTGAGAGATAA 57.759 39.130 0.00 0.00 0.00 1.75
107 108 5.630121 TGGAAGCAAGGTTTGAGAGATAAA 58.370 37.500 0.00 0.00 0.00 1.40
108 109 6.068010 TGGAAGCAAGGTTTGAGAGATAAAA 58.932 36.000 0.00 0.00 0.00 1.52
109 110 6.016276 TGGAAGCAAGGTTTGAGAGATAAAAC 60.016 38.462 0.00 0.00 0.00 2.43
110 111 5.613358 AGCAAGGTTTGAGAGATAAAACG 57.387 39.130 0.00 0.00 30.25 3.60
111 112 5.063880 AGCAAGGTTTGAGAGATAAAACGT 58.936 37.500 0.00 0.00 30.25 3.99
112 113 5.531287 AGCAAGGTTTGAGAGATAAAACGTT 59.469 36.000 0.00 0.00 34.74 3.99
113 114 6.039382 AGCAAGGTTTGAGAGATAAAACGTTT 59.961 34.615 7.96 7.96 32.92 3.60
114 115 6.695713 GCAAGGTTTGAGAGATAAAACGTTTT 59.304 34.615 27.65 27.65 32.92 2.43
115 116 7.305993 GCAAGGTTTGAGAGATAAAACGTTTTG 60.306 37.037 31.26 13.67 32.92 2.44
116 117 7.562454 AGGTTTGAGAGATAAAACGTTTTGA 57.438 32.000 31.26 17.70 30.25 2.69
117 118 7.992008 AGGTTTGAGAGATAAAACGTTTTGAA 58.008 30.769 31.26 16.35 30.25 2.69
118 119 8.630037 AGGTTTGAGAGATAAAACGTTTTGAAT 58.370 29.630 31.26 20.03 30.25 2.57
119 120 9.887406 GGTTTGAGAGATAAAACGTTTTGAATA 57.113 29.630 31.26 15.31 0.00 1.75
132 133 6.321873 CGTTTTGAATAAACGGATCTACGA 57.678 37.500 13.31 0.00 46.39 3.43
133 134 6.754206 CGTTTTGAATAAACGGATCTACGAA 58.246 36.000 13.31 0.00 46.39 3.85
134 135 7.228840 CGTTTTGAATAAACGGATCTACGAAA 58.771 34.615 13.31 0.00 46.39 3.46
135 136 7.741216 CGTTTTGAATAAACGGATCTACGAAAA 59.259 33.333 13.31 0.00 46.39 2.29
136 137 9.384682 GTTTTGAATAAACGGATCTACGAAAAA 57.615 29.630 0.00 0.00 37.61 1.94
155 156 5.598416 AAAAAGGGAAAACTCTCAGGTTG 57.402 39.130 0.00 0.00 0.00 3.77
156 157 2.278332 AGGGAAAACTCTCAGGTTGC 57.722 50.000 0.00 0.00 0.00 4.17
157 158 0.875059 GGGAAAACTCTCAGGTTGCG 59.125 55.000 0.00 0.00 0.00 4.85
158 159 1.542547 GGGAAAACTCTCAGGTTGCGA 60.543 52.381 0.00 0.00 0.00 5.10
159 160 1.531578 GGAAAACTCTCAGGTTGCGAC 59.468 52.381 0.00 0.00 0.00 5.19
160 161 2.210116 GAAAACTCTCAGGTTGCGACA 58.790 47.619 6.39 0.00 0.00 4.35
161 162 2.325583 AAACTCTCAGGTTGCGACAA 57.674 45.000 6.39 0.00 0.00 3.18
162 163 1.871080 AACTCTCAGGTTGCGACAAG 58.129 50.000 6.39 0.31 0.00 3.16
163 164 0.753262 ACTCTCAGGTTGCGACAAGT 59.247 50.000 6.39 0.00 0.00 3.16
164 165 1.961394 ACTCTCAGGTTGCGACAAGTA 59.039 47.619 6.39 0.00 0.00 2.24
165 166 2.364324 ACTCTCAGGTTGCGACAAGTAA 59.636 45.455 6.39 0.00 0.00 2.24
166 167 2.731976 CTCTCAGGTTGCGACAAGTAAC 59.268 50.000 6.39 0.00 43.44 2.50
167 168 1.455786 CTCAGGTTGCGACAAGTAACG 59.544 52.381 6.39 0.00 44.82 3.18
172 173 4.392945 GCGACAAGTAACGCGTTG 57.607 55.556 33.40 20.35 44.91 4.10
173 174 1.561250 GCGACAAGTAACGCGTTGT 59.439 52.632 33.40 23.61 44.91 3.32
174 175 0.777631 GCGACAAGTAACGCGTTGTA 59.222 50.000 33.40 12.97 44.91 2.41
175 176 1.387756 GCGACAAGTAACGCGTTGTAT 59.612 47.619 33.40 16.38 44.91 2.29
176 177 2.778641 GCGACAAGTAACGCGTTGTATG 60.779 50.000 33.40 27.01 44.91 2.39
177 178 2.406024 CGACAAGTAACGCGTTGTATGT 59.594 45.455 33.40 29.63 37.02 2.29
178 179 3.716891 CGACAAGTAACGCGTTGTATGTG 60.717 47.826 33.40 23.25 37.02 3.21
179 180 2.096614 ACAAGTAACGCGTTGTATGTGC 60.097 45.455 33.40 10.63 35.10 4.57
184 185 2.791256 GCGTTGTATGTGCGCCAT 59.209 55.556 4.18 10.85 44.67 4.40
185 186 1.136565 GCGTTGTATGTGCGCCATT 59.863 52.632 15.07 0.00 44.67 3.16
186 187 0.455972 GCGTTGTATGTGCGCCATTT 60.456 50.000 15.07 0.00 44.67 2.32
187 188 1.258427 CGTTGTATGTGCGCCATTTG 58.742 50.000 15.07 0.82 34.86 2.32
188 189 1.400888 CGTTGTATGTGCGCCATTTGT 60.401 47.619 15.07 0.00 34.86 2.83
189 190 2.671596 GTTGTATGTGCGCCATTTGTT 58.328 42.857 15.07 0.00 34.86 2.83
190 191 2.344504 TGTATGTGCGCCATTTGTTG 57.655 45.000 15.07 0.00 34.86 3.33
191 192 0.991344 GTATGTGCGCCATTTGTTGC 59.009 50.000 15.07 0.00 34.86 4.17
192 193 0.600057 TATGTGCGCCATTTGTTGCA 59.400 45.000 15.07 0.00 34.86 4.08
193 194 0.249784 ATGTGCGCCATTTGTTGCAA 60.250 45.000 4.18 0.00 39.34 4.08
194 195 1.150567 TGTGCGCCATTTGTTGCAAC 61.151 50.000 22.83 22.83 39.34 4.17
195 196 1.593750 TGCGCCATTTGTTGCAACC 60.594 52.632 26.14 9.01 33.80 3.77
196 197 1.593750 GCGCCATTTGTTGCAACCA 60.594 52.632 26.14 13.54 0.00 3.67
197 198 1.830368 GCGCCATTTGTTGCAACCAC 61.830 55.000 26.14 3.29 0.00 4.16
198 199 1.547292 CGCCATTTGTTGCAACCACG 61.547 55.000 26.14 15.78 0.00 4.94
199 200 1.220817 GCCATTTGTTGCAACCACGG 61.221 55.000 26.14 20.35 0.00 4.94
200 201 0.599728 CCATTTGTTGCAACCACGGG 60.600 55.000 26.14 17.93 0.00 5.28
201 202 0.387202 CATTTGTTGCAACCACGGGA 59.613 50.000 26.14 3.90 0.00 5.14
202 203 0.673437 ATTTGTTGCAACCACGGGAG 59.327 50.000 26.14 0.00 0.00 4.30
204 205 0.681564 TTGTTGCAACCACGGGAGTT 60.682 50.000 26.14 0.00 44.67 3.01
205 206 1.358759 GTTGCAACCACGGGAGTTG 59.641 57.895 19.15 12.88 45.92 3.16
206 207 1.826054 TTGCAACCACGGGAGTTGG 60.826 57.895 17.16 4.54 43.86 3.77
207 208 2.112297 GCAACCACGGGAGTTGGA 59.888 61.111 17.16 0.00 43.86 3.53
208 209 1.966451 GCAACCACGGGAGTTGGAG 60.966 63.158 17.16 2.65 43.86 3.86
209 210 1.450211 CAACCACGGGAGTTGGAGT 59.550 57.895 10.19 0.00 44.67 3.85
210 211 0.884704 CAACCACGGGAGTTGGAGTG 60.885 60.000 10.19 0.00 44.67 3.51
211 212 1.052124 AACCACGGGAGTTGGAGTGA 61.052 55.000 0.00 0.00 44.67 3.41
212 213 0.836400 ACCACGGGAGTTGGAGTGAT 60.836 55.000 0.00 0.00 44.67 3.06
213 214 0.108138 CCACGGGAGTTGGAGTGATC 60.108 60.000 0.00 0.00 44.67 2.92
214 215 0.898320 CACGGGAGTTGGAGTGATCT 59.102 55.000 0.00 0.00 44.67 2.75
215 216 1.276421 CACGGGAGTTGGAGTGATCTT 59.724 52.381 0.00 0.00 44.67 2.40
216 217 1.978580 ACGGGAGTTGGAGTGATCTTT 59.021 47.619 0.00 0.00 43.33 2.52
217 218 2.289694 ACGGGAGTTGGAGTGATCTTTG 60.290 50.000 0.00 0.00 43.33 2.77
218 219 2.087646 GGGAGTTGGAGTGATCTTTGC 58.912 52.381 0.00 0.00 0.00 3.68
219 220 2.553028 GGGAGTTGGAGTGATCTTTGCA 60.553 50.000 0.00 0.00 0.00 4.08
220 221 3.149196 GGAGTTGGAGTGATCTTTGCAA 58.851 45.455 0.00 0.00 0.00 4.08
221 222 3.057946 GGAGTTGGAGTGATCTTTGCAAC 60.058 47.826 19.22 19.22 43.36 4.17
222 223 2.549754 AGTTGGAGTGATCTTTGCAACG 59.450 45.455 20.03 0.00 46.26 4.10
223 224 2.542020 TGGAGTGATCTTTGCAACGA 57.458 45.000 8.20 8.20 0.00 3.85
224 225 2.416747 TGGAGTGATCTTTGCAACGAG 58.583 47.619 11.57 1.70 0.00 4.18
225 226 2.224281 TGGAGTGATCTTTGCAACGAGT 60.224 45.455 11.57 0.34 0.00 4.18
226 227 3.006430 TGGAGTGATCTTTGCAACGAGTA 59.994 43.478 11.57 0.27 0.00 2.59
227 228 3.368236 GGAGTGATCTTTGCAACGAGTAC 59.632 47.826 11.57 11.75 0.00 2.73
228 229 4.238514 GAGTGATCTTTGCAACGAGTACT 58.761 43.478 18.57 18.57 0.00 2.73
229 230 4.238514 AGTGATCTTTGCAACGAGTACTC 58.761 43.478 13.18 13.18 0.00 2.59
230 231 3.368236 GTGATCTTTGCAACGAGTACTCC 59.632 47.826 17.23 3.69 0.00 3.85
231 232 3.258372 TGATCTTTGCAACGAGTACTCCT 59.742 43.478 17.23 2.73 0.00 3.69
232 233 3.299340 TCTTTGCAACGAGTACTCCTC 57.701 47.619 17.23 4.60 36.80 3.71
233 234 2.626266 TCTTTGCAACGAGTACTCCTCA 59.374 45.455 17.23 7.05 40.48 3.86
234 235 3.069016 TCTTTGCAACGAGTACTCCTCAA 59.931 43.478 17.23 12.14 40.48 3.02
235 236 3.678056 TTGCAACGAGTACTCCTCAAT 57.322 42.857 17.23 0.00 40.48 2.57
236 237 3.678056 TGCAACGAGTACTCCTCAATT 57.322 42.857 17.23 1.76 40.48 2.32
237 238 4.794278 TGCAACGAGTACTCCTCAATTA 57.206 40.909 17.23 0.00 40.48 1.40
238 239 4.744570 TGCAACGAGTACTCCTCAATTAG 58.255 43.478 17.23 3.13 40.48 1.73
239 240 4.219944 TGCAACGAGTACTCCTCAATTAGT 59.780 41.667 17.23 3.77 40.48 2.24
240 241 4.563184 GCAACGAGTACTCCTCAATTAGTG 59.437 45.833 17.23 1.71 40.48 2.74
241 242 5.621555 GCAACGAGTACTCCTCAATTAGTGA 60.622 44.000 17.23 0.00 40.48 3.41
242 243 6.565234 CAACGAGTACTCCTCAATTAGTGAT 58.435 40.000 17.23 0.00 40.48 3.06
243 244 6.777213 ACGAGTACTCCTCAATTAGTGATT 57.223 37.500 17.23 0.00 40.48 2.57
244 245 7.171630 ACGAGTACTCCTCAATTAGTGATTT 57.828 36.000 17.23 0.00 40.48 2.17
245 246 7.259161 ACGAGTACTCCTCAATTAGTGATTTC 58.741 38.462 17.23 0.00 40.48 2.17
246 247 6.415280 CGAGTACTCCTCAATTAGTGATTTCG 59.585 42.308 17.23 0.00 40.48 3.46
247 248 7.406031 AGTACTCCTCAATTAGTGATTTCGA 57.594 36.000 0.00 0.00 35.07 3.71
248 249 8.012957 AGTACTCCTCAATTAGTGATTTCGAT 57.987 34.615 0.00 0.00 35.07 3.59
249 250 8.478877 AGTACTCCTCAATTAGTGATTTCGATT 58.521 33.333 0.00 0.00 35.07 3.34
250 251 9.099454 GTACTCCTCAATTAGTGATTTCGATTT 57.901 33.333 0.00 0.00 35.07 2.17
251 252 8.567285 ACTCCTCAATTAGTGATTTCGATTTT 57.433 30.769 0.00 0.00 35.07 1.82
252 253 9.667107 ACTCCTCAATTAGTGATTTCGATTTTA 57.333 29.630 0.00 0.00 35.07 1.52
254 255 8.612619 TCCTCAATTAGTGATTTCGATTTTAGC 58.387 33.333 0.00 0.00 35.07 3.09
255 256 7.857885 CCTCAATTAGTGATTTCGATTTTAGCC 59.142 37.037 0.00 0.00 35.07 3.93
256 257 8.506168 TCAATTAGTGATTTCGATTTTAGCCT 57.494 30.769 0.00 0.00 0.00 4.58
257 258 8.397906 TCAATTAGTGATTTCGATTTTAGCCTG 58.602 33.333 0.00 0.00 0.00 4.85
258 259 7.865706 ATTAGTGATTTCGATTTTAGCCTGT 57.134 32.000 0.00 0.00 0.00 4.00
259 260 7.681939 TTAGTGATTTCGATTTTAGCCTGTT 57.318 32.000 0.00 0.00 0.00 3.16
260 261 5.942872 AGTGATTTCGATTTTAGCCTGTTG 58.057 37.500 0.00 0.00 0.00 3.33
261 262 5.473504 AGTGATTTCGATTTTAGCCTGTTGT 59.526 36.000 0.00 0.00 0.00 3.32
262 263 5.569059 GTGATTTCGATTTTAGCCTGTTGTG 59.431 40.000 0.00 0.00 0.00 3.33
263 264 3.552604 TTCGATTTTAGCCTGTTGTGC 57.447 42.857 0.00 0.00 0.00 4.57
264 265 1.463056 TCGATTTTAGCCTGTTGTGCG 59.537 47.619 0.00 0.00 0.00 5.34
265 266 1.196808 CGATTTTAGCCTGTTGTGCGT 59.803 47.619 0.00 0.00 0.00 5.24
266 267 2.724839 CGATTTTAGCCTGTTGTGCGTC 60.725 50.000 0.00 0.00 0.00 5.19
267 268 0.584396 TTTTAGCCTGTTGTGCGTCG 59.416 50.000 0.00 0.00 0.00 5.12
268 269 1.225376 TTTAGCCTGTTGTGCGTCGG 61.225 55.000 0.00 0.00 0.00 4.79
269 270 2.372040 TTAGCCTGTTGTGCGTCGGT 62.372 55.000 0.00 0.00 0.00 4.69
270 271 4.012895 GCCTGTTGTGCGTCGGTG 62.013 66.667 0.00 0.00 0.00 4.94
271 272 2.279851 CCTGTTGTGCGTCGGTGA 60.280 61.111 0.00 0.00 0.00 4.02
272 273 1.667830 CCTGTTGTGCGTCGGTGAT 60.668 57.895 0.00 0.00 0.00 3.06
273 274 0.389296 CCTGTTGTGCGTCGGTGATA 60.389 55.000 0.00 0.00 0.00 2.15
274 275 1.424403 CTGTTGTGCGTCGGTGATAA 58.576 50.000 0.00 0.00 0.00 1.75
275 276 1.390123 CTGTTGTGCGTCGGTGATAAG 59.610 52.381 0.00 0.00 0.00 1.73
276 277 0.719465 GTTGTGCGTCGGTGATAAGG 59.281 55.000 0.00 0.00 0.00 2.69
277 278 0.604073 TTGTGCGTCGGTGATAAGGA 59.396 50.000 0.00 0.00 0.00 3.36
278 279 0.172578 TGTGCGTCGGTGATAAGGAG 59.827 55.000 0.00 0.00 0.00 3.69
279 280 0.527817 GTGCGTCGGTGATAAGGAGG 60.528 60.000 0.00 0.00 0.00 4.30
280 281 0.681887 TGCGTCGGTGATAAGGAGGA 60.682 55.000 0.00 0.00 0.00 3.71
281 282 0.458669 GCGTCGGTGATAAGGAGGAA 59.541 55.000 0.00 0.00 0.00 3.36
282 283 1.134907 GCGTCGGTGATAAGGAGGAAA 60.135 52.381 0.00 0.00 0.00 3.13
283 284 2.537401 CGTCGGTGATAAGGAGGAAAC 58.463 52.381 0.00 0.00 0.00 2.78
285 286 3.368116 CGTCGGTGATAAGGAGGAAACTT 60.368 47.826 0.00 0.00 44.43 2.66
286 287 4.182339 GTCGGTGATAAGGAGGAAACTTC 58.818 47.826 0.00 0.00 44.43 3.01
287 288 3.835978 TCGGTGATAAGGAGGAAACTTCA 59.164 43.478 0.00 0.00 44.43 3.02
288 289 4.081642 TCGGTGATAAGGAGGAAACTTCAG 60.082 45.833 0.00 0.00 44.43 3.02
289 290 4.081642 CGGTGATAAGGAGGAAACTTCAGA 60.082 45.833 0.00 0.00 44.43 3.27
290 291 5.395768 CGGTGATAAGGAGGAAACTTCAGAT 60.396 44.000 0.00 0.00 44.43 2.90
291 292 6.418946 GGTGATAAGGAGGAAACTTCAGATT 58.581 40.000 0.00 0.00 44.43 2.40
292 293 6.887002 GGTGATAAGGAGGAAACTTCAGATTT 59.113 38.462 0.00 0.00 44.43 2.17
293 294 7.394641 GGTGATAAGGAGGAAACTTCAGATTTT 59.605 37.037 0.00 0.00 44.43 1.82
294 295 9.449719 GTGATAAGGAGGAAACTTCAGATTTTA 57.550 33.333 0.00 0.00 44.43 1.52
297 298 9.981460 ATAAGGAGGAAACTTCAGATTTTATGT 57.019 29.630 0.00 0.00 44.43 2.29
298 299 7.929941 AGGAGGAAACTTCAGATTTTATGTC 57.070 36.000 0.00 0.00 44.43 3.06
299 300 6.887002 AGGAGGAAACTTCAGATTTTATGTCC 59.113 38.462 0.00 0.00 44.43 4.02
300 301 6.659242 GGAGGAAACTTCAGATTTTATGTCCA 59.341 38.462 0.00 0.00 44.43 4.02
301 302 7.176690 GGAGGAAACTTCAGATTTTATGTCCAA 59.823 37.037 0.00 0.00 44.43 3.53
302 303 8.655935 AGGAAACTTCAGATTTTATGTCCAAT 57.344 30.769 0.00 0.00 37.44 3.16
303 304 9.753674 AGGAAACTTCAGATTTTATGTCCAATA 57.246 29.630 0.00 0.00 37.44 1.90
338 339 0.460284 ATTGACACCTCGCGGACATC 60.460 55.000 6.13 0.00 0.00 3.06
364 365 4.624336 AAATATTCGCGCCAATACACAA 57.376 36.364 9.71 0.00 0.00 3.33
467 468 0.388134 CCACCGACGTAGTTGACCAG 60.388 60.000 0.00 0.00 47.00 4.00
577 586 1.801771 CGCGAACCAGGTGATTAAACA 59.198 47.619 0.00 0.00 0.00 2.83
594 603 3.866883 AACAAGGGTTTCACAGTTGTG 57.133 42.857 5.91 5.91 46.91 3.33
655 664 2.187946 CCTCGATCACCAGCACCC 59.812 66.667 0.00 0.00 0.00 4.61
656 665 2.659063 CCTCGATCACCAGCACCCA 61.659 63.158 0.00 0.00 0.00 4.51
657 666 1.524002 CTCGATCACCAGCACCCAT 59.476 57.895 0.00 0.00 0.00 4.00
658 667 0.812811 CTCGATCACCAGCACCCATG 60.813 60.000 0.00 0.00 0.00 3.66
711 721 3.587506 ACCTAAGTAGCATGGTTTCCACT 59.412 43.478 1.12 0.00 35.80 4.00
744 754 1.938577 CCTGGCACTGAATTGATCTCG 59.061 52.381 0.00 0.00 0.00 4.04
745 755 1.329906 CTGGCACTGAATTGATCTCGC 59.670 52.381 0.00 0.00 0.00 5.03
746 756 1.065926 TGGCACTGAATTGATCTCGCT 60.066 47.619 0.00 0.00 0.00 4.93
747 757 1.596727 GGCACTGAATTGATCTCGCTC 59.403 52.381 0.00 0.00 0.00 5.03
752 762 5.527033 CACTGAATTGATCTCGCTCATAGA 58.473 41.667 0.00 0.00 0.00 1.98
757 767 9.368674 CTGAATTGATCTCGCTCATAGATTAAT 57.631 33.333 0.00 0.00 39.82 1.40
759 769 9.585099 GAATTGATCTCGCTCATAGATTAATCT 57.415 33.333 21.28 21.28 38.19 2.40
801 814 1.968540 GCTTGCCCTCTGTGGTGAC 60.969 63.158 0.00 0.00 0.00 3.67
803 820 0.604780 CTTGCCCTCTGTGGTGACTG 60.605 60.000 0.00 0.00 0.00 3.51
811 828 2.609459 CTCTGTGGTGACTGTGTGTTTC 59.391 50.000 0.00 0.00 0.00 2.78
816 833 1.274596 GTGACTGTGTGTTTCGACGT 58.725 50.000 0.00 0.00 0.00 4.34
890 920 0.610232 GCCTTTGCATCCCTCACAGT 60.610 55.000 0.00 0.00 37.47 3.55
897 953 2.234661 TGCATCCCTCACAGTGAGTTAG 59.765 50.000 25.88 15.63 42.80 2.34
898 954 2.234908 GCATCCCTCACAGTGAGTTAGT 59.765 50.000 25.88 8.99 42.80 2.24
916 976 6.068670 AGTTAGTCATTAACAAGCAGGGTTT 58.931 36.000 0.00 0.00 43.38 3.27
917 977 6.206829 AGTTAGTCATTAACAAGCAGGGTTTC 59.793 38.462 0.00 0.00 43.38 2.78
918 978 4.729868 AGTCATTAACAAGCAGGGTTTCT 58.270 39.130 0.00 0.00 0.00 2.52
919 979 5.876357 AGTCATTAACAAGCAGGGTTTCTA 58.124 37.500 0.00 0.00 0.00 2.10
960 1020 3.910490 GAGCGATCGAGCAGCCCT 61.910 66.667 21.57 3.78 40.15 5.19
1284 1347 2.556287 CTCACGGCAAAGAACGGC 59.444 61.111 0.00 0.00 0.00 5.68
1395 1461 5.580691 CACCGACTGAAACAATGAAGCTATA 59.419 40.000 0.00 0.00 0.00 1.31
1396 1462 6.258727 CACCGACTGAAACAATGAAGCTATAT 59.741 38.462 0.00 0.00 0.00 0.86
1397 1463 6.258727 ACCGACTGAAACAATGAAGCTATATG 59.741 38.462 0.00 0.00 0.00 1.78
1398 1464 6.258727 CCGACTGAAACAATGAAGCTATATGT 59.741 38.462 0.00 0.00 0.00 2.29
1473 1558 4.315803 AGGTTGATAGGTTTTCACTGTCG 58.684 43.478 0.00 0.00 0.00 4.35
1586 1671 3.193479 ACTTATTTAGCAAAGCTGGCCAC 59.807 43.478 0.00 0.00 40.10 5.01
1637 1722 0.892755 CACACTTGCTTGCCATGGAT 59.107 50.000 18.40 0.00 0.00 3.41
1657 1742 3.672767 TGGGTAAAAACCTCGTCTCTC 57.327 47.619 0.00 0.00 0.00 3.20
1771 1856 0.323725 AGGTGTCCATGCAATGTCCC 60.324 55.000 0.00 0.00 44.81 4.46
1773 1858 1.064758 GGTGTCCATGCAATGTCCCTA 60.065 52.381 0.00 0.00 44.81 3.53
1774 1859 2.017049 GTGTCCATGCAATGTCCCTAC 58.983 52.381 0.00 0.00 44.81 3.18
1775 1860 1.064758 TGTCCATGCAATGTCCCTACC 60.065 52.381 0.00 0.00 44.81 3.18
1776 1861 1.064758 GTCCATGCAATGTCCCTACCA 60.065 52.381 0.00 0.00 44.81 3.25
1777 1862 1.064758 TCCATGCAATGTCCCTACCAC 60.065 52.381 0.00 0.00 44.81 4.16
1779 1864 2.445427 CATGCAATGTCCCTACCACAA 58.555 47.619 0.00 0.00 40.20 3.33
1780 1865 2.666272 TGCAATGTCCCTACCACAAA 57.334 45.000 0.00 0.00 0.00 2.83
1781 1866 2.513753 TGCAATGTCCCTACCACAAAG 58.486 47.619 0.00 0.00 0.00 2.77
1782 1867 2.158534 TGCAATGTCCCTACCACAAAGT 60.159 45.455 0.00 0.00 0.00 2.66
1784 1869 3.320826 GCAATGTCCCTACCACAAAGTTT 59.679 43.478 0.00 0.00 0.00 2.66
1785 1870 4.202212 GCAATGTCCCTACCACAAAGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
1787 1872 4.993029 TGTCCCTACCACAAAGTTTTTG 57.007 40.909 0.28 0.28 0.00 2.44
1788 1873 4.345854 TGTCCCTACCACAAAGTTTTTGT 58.654 39.130 1.55 1.55 0.00 2.83
1789 1874 4.773149 TGTCCCTACCACAAAGTTTTTGTT 59.227 37.500 4.55 0.00 0.00 2.83
1790 1875 5.106442 GTCCCTACCACAAAGTTTTTGTTG 58.894 41.667 4.55 4.65 0.00 3.33
1791 1876 5.017490 TCCCTACCACAAAGTTTTTGTTGA 58.983 37.500 11.30 0.00 0.00 3.18
1792 1877 5.126384 TCCCTACCACAAAGTTTTTGTTGAG 59.874 40.000 11.30 6.54 0.00 3.02
1793 1878 5.126384 CCCTACCACAAAGTTTTTGTTGAGA 59.874 40.000 11.30 1.12 0.00 3.27
1794 1879 6.183360 CCCTACCACAAAGTTTTTGTTGAGAT 60.183 38.462 11.30 0.00 0.00 2.75
1795 1880 7.264947 CCTACCACAAAGTTTTTGTTGAGATT 58.735 34.615 11.30 0.00 0.00 2.40
1796 1881 8.410141 CCTACCACAAAGTTTTTGTTGAGATTA 58.590 33.333 11.30 0.00 0.00 1.75
1797 1882 9.965824 CTACCACAAAGTTTTTGTTGAGATTAT 57.034 29.630 11.30 0.00 0.00 1.28
1799 1884 9.097257 ACCACAAAGTTTTTGTTGAGATTATTG 57.903 29.630 11.30 0.00 0.00 1.90
1800 1885 9.097257 CCACAAAGTTTTTGTTGAGATTATTGT 57.903 29.630 4.55 0.00 0.00 2.71
1801 1886 9.904647 CACAAAGTTTTTGTTGAGATTATTGTG 57.095 29.630 4.55 0.00 37.49 3.33
1802 1887 9.097257 ACAAAGTTTTTGTTGAGATTATTGTGG 57.903 29.630 1.55 0.00 0.00 4.17
1803 1888 9.311916 CAAAGTTTTTGTTGAGATTATTGTGGA 57.688 29.630 0.00 0.00 0.00 4.02
1805 1890 9.480053 AAGTTTTTGTTGAGATTATTGTGGATG 57.520 29.630 0.00 0.00 0.00 3.51
1806 1891 8.090214 AGTTTTTGTTGAGATTATTGTGGATGG 58.910 33.333 0.00 0.00 0.00 3.51
1807 1892 7.537596 TTTTGTTGAGATTATTGTGGATGGT 57.462 32.000 0.00 0.00 0.00 3.55
1808 1893 6.757897 TTGTTGAGATTATTGTGGATGGTC 57.242 37.500 0.00 0.00 0.00 4.02
1809 1894 6.065976 TGTTGAGATTATTGTGGATGGTCT 57.934 37.500 0.00 0.00 0.00 3.85
1810 1895 7.194112 TGTTGAGATTATTGTGGATGGTCTA 57.806 36.000 0.00 0.00 0.00 2.59
1811 1896 7.047891 TGTTGAGATTATTGTGGATGGTCTAC 58.952 38.462 0.00 0.00 0.00 2.59
1812 1897 6.806668 TGAGATTATTGTGGATGGTCTACA 57.193 37.500 0.00 0.00 36.03 2.74
1813 1898 7.379059 TGAGATTATTGTGGATGGTCTACAT 57.621 36.000 0.00 0.00 37.70 2.29
1814 1899 7.805163 TGAGATTATTGTGGATGGTCTACATT 58.195 34.615 0.00 0.00 37.70 2.71
1815 1900 8.274322 TGAGATTATTGTGGATGGTCTACATTT 58.726 33.333 0.00 0.00 37.70 2.32
1816 1901 9.778741 GAGATTATTGTGGATGGTCTACATTTA 57.221 33.333 0.00 0.00 37.70 1.40
1817 1902 9.784531 AGATTATTGTGGATGGTCTACATTTAG 57.215 33.333 0.00 0.00 37.70 1.85
1818 1903 9.561069 GATTATTGTGGATGGTCTACATTTAGT 57.439 33.333 0.00 0.00 37.70 2.24
1819 1904 8.731275 TTATTGTGGATGGTCTACATTTAGTG 57.269 34.615 0.00 0.00 37.70 2.74
1820 1905 6.367374 TTGTGGATGGTCTACATTTAGTGA 57.633 37.500 0.00 0.00 37.70 3.41
1821 1906 5.730550 TGTGGATGGTCTACATTTAGTGAC 58.269 41.667 0.00 0.00 40.72 3.67
1822 1907 5.247337 TGTGGATGGTCTACATTTAGTGACA 59.753 40.000 0.00 0.00 40.72 3.58
1823 1908 6.170506 GTGGATGGTCTACATTTAGTGACAA 58.829 40.000 0.00 0.00 40.72 3.18
1824 1909 6.823689 GTGGATGGTCTACATTTAGTGACAAT 59.176 38.462 0.00 0.00 40.72 2.71
1825 1910 6.823182 TGGATGGTCTACATTTAGTGACAATG 59.177 38.462 0.00 0.00 40.72 2.82
1826 1911 6.823689 GGATGGTCTACATTTAGTGACAATGT 59.176 38.462 6.54 6.54 45.05 2.71
1827 1912 7.011482 GGATGGTCTACATTTAGTGACAATGTC 59.989 40.741 6.41 6.41 42.63 3.06
1828 1913 6.170506 TGGTCTACATTTAGTGACAATGTCC 58.829 40.000 11.24 2.45 42.63 4.02
1829 1914 6.013725 TGGTCTACATTTAGTGACAATGTCCT 60.014 38.462 11.24 9.84 42.63 3.85
1830 1915 6.879458 GGTCTACATTTAGTGACAATGTCCTT 59.121 38.462 11.24 1.55 42.63 3.36
1831 1916 7.064728 GGTCTACATTTAGTGACAATGTCCTTC 59.935 40.741 11.24 1.90 42.63 3.46
1832 1917 7.819900 GTCTACATTTAGTGACAATGTCCTTCT 59.180 37.037 11.24 9.07 42.63 2.85
1833 1918 9.031537 TCTACATTTAGTGACAATGTCCTTCTA 57.968 33.333 11.24 8.16 42.63 2.10
1834 1919 9.823647 CTACATTTAGTGACAATGTCCTTCTAT 57.176 33.333 11.24 0.00 42.63 1.98
1835 1920 8.498054 ACATTTAGTGACAATGTCCTTCTATG 57.502 34.615 11.24 11.05 40.17 2.23
1836 1921 8.321353 ACATTTAGTGACAATGTCCTTCTATGA 58.679 33.333 11.24 4.40 40.17 2.15
1837 1922 8.824781 CATTTAGTGACAATGTCCTTCTATGAG 58.175 37.037 11.24 1.69 0.00 2.90
1838 1923 7.718334 TTAGTGACAATGTCCTTCTATGAGA 57.282 36.000 11.24 0.00 0.00 3.27
1839 1924 6.219417 AGTGACAATGTCCTTCTATGAGAG 57.781 41.667 11.24 0.00 0.00 3.20
1840 1925 5.128499 AGTGACAATGTCCTTCTATGAGAGG 59.872 44.000 11.24 0.00 0.00 3.69
1841 1926 5.127845 GTGACAATGTCCTTCTATGAGAGGA 59.872 44.000 11.24 0.00 0.00 3.71
1842 1927 5.362143 TGACAATGTCCTTCTATGAGAGGAG 59.638 44.000 11.24 0.00 0.00 3.69
1993 2080 4.565022 TGCAATTCTGATGTAAGTCGTCA 58.435 39.130 0.00 0.00 39.45 4.35
2057 4654 5.843019 TTTTAAACATCTCCTGGAGACCT 57.157 39.130 27.85 11.27 41.76 3.85
2058 4655 6.945636 TTTTAAACATCTCCTGGAGACCTA 57.054 37.500 27.85 13.66 41.76 3.08
2059 4656 6.546428 TTTAAACATCTCCTGGAGACCTAG 57.454 41.667 27.85 19.04 41.76 3.02
2060 4657 2.080654 ACATCTCCTGGAGACCTAGC 57.919 55.000 27.85 0.00 41.76 3.42
2061 4658 1.573376 ACATCTCCTGGAGACCTAGCT 59.427 52.381 27.85 8.97 41.76 3.32
2062 4659 2.023501 ACATCTCCTGGAGACCTAGCTT 60.024 50.000 27.85 8.21 41.76 3.74
2063 4660 2.151502 TCTCCTGGAGACCTAGCTTG 57.848 55.000 22.30 0.00 33.35 4.01
2064 4661 1.359474 TCTCCTGGAGACCTAGCTTGT 59.641 52.381 22.30 0.00 33.35 3.16
2065 4662 2.581246 TCTCCTGGAGACCTAGCTTGTA 59.419 50.000 22.30 0.00 33.35 2.41
2066 4663 3.011369 TCTCCTGGAGACCTAGCTTGTAA 59.989 47.826 22.30 0.00 33.35 2.41
2067 4664 3.366396 TCCTGGAGACCTAGCTTGTAAG 58.634 50.000 0.00 0.00 0.00 2.34
2082 4679 4.892433 CTTGTAAGCTCCTAGGATGATGG 58.108 47.826 13.12 0.66 0.00 3.51
2083 4680 4.199002 TGTAAGCTCCTAGGATGATGGA 57.801 45.455 13.12 0.00 0.00 3.41
2084 4681 4.756564 TGTAAGCTCCTAGGATGATGGAT 58.243 43.478 13.12 0.00 0.00 3.41
2085 4682 4.774726 TGTAAGCTCCTAGGATGATGGATC 59.225 45.833 13.12 0.00 0.00 3.36
2157 4754 1.124780 TCTGTGGTCTTTTGGGACGA 58.875 50.000 0.00 0.00 37.12 4.20
2169 4766 2.070650 GGGACGATTGGGGGTAGCT 61.071 63.158 0.00 0.00 0.00 3.32
2183 4780 2.368221 GGGTAGCTCATTCTGCTCTCAT 59.632 50.000 0.00 0.00 41.46 2.90
2198 4795 6.427242 TCTGCTCTCATTAGATCATGAATTGC 59.573 38.462 0.00 2.34 32.63 3.56
2256 4854 5.316167 AGACATTGTGGTTTCTGCTTATGA 58.684 37.500 0.00 0.00 0.00 2.15
2270 4868 7.722949 TCTGCTTATGAAAATTGGAAAGGAT 57.277 32.000 0.00 0.00 0.00 3.24
2320 4921 1.905894 AGAAAGAGAAGAGCTCCCACC 59.094 52.381 10.93 0.00 45.10 4.61
2353 4954 1.210234 TGAGCCCGTGAATGATGACAT 59.790 47.619 0.00 0.00 38.50 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.097257 CATGTTGATAGGTTTTCACAAACTTTT 57.903 29.630 0.00 0.00 41.92 2.27
1 2 7.710475 CCATGTTGATAGGTTTTCACAAACTTT 59.290 33.333 0.00 0.00 41.92 2.66
2 3 7.209475 CCATGTTGATAGGTTTTCACAAACTT 58.791 34.615 0.00 0.00 41.92 2.66
3 4 6.239289 CCCATGTTGATAGGTTTTCACAAACT 60.239 38.462 0.00 0.00 41.92 2.66
4 5 5.925969 CCCATGTTGATAGGTTTTCACAAAC 59.074 40.000 0.00 0.00 41.57 2.93
5 6 5.835819 TCCCATGTTGATAGGTTTTCACAAA 59.164 36.000 0.00 0.00 0.00 2.83
6 7 5.389520 TCCCATGTTGATAGGTTTTCACAA 58.610 37.500 0.00 0.00 0.00 3.33
7 8 4.991776 TCCCATGTTGATAGGTTTTCACA 58.008 39.130 0.00 0.00 0.00 3.58
8 9 5.888161 AGATCCCATGTTGATAGGTTTTCAC 59.112 40.000 0.00 0.00 0.00 3.18
9 10 6.078456 AGATCCCATGTTGATAGGTTTTCA 57.922 37.500 0.00 0.00 0.00 2.69
10 11 8.697507 ATTAGATCCCATGTTGATAGGTTTTC 57.302 34.615 0.00 0.00 0.00 2.29
11 12 9.492730 AAATTAGATCCCATGTTGATAGGTTTT 57.507 29.630 0.00 0.00 0.00 2.43
12 13 9.492730 AAAATTAGATCCCATGTTGATAGGTTT 57.507 29.630 0.00 0.00 0.00 3.27
13 14 8.917088 CAAAATTAGATCCCATGTTGATAGGTT 58.083 33.333 0.05 0.00 0.00 3.50
14 15 8.281531 TCAAAATTAGATCCCATGTTGATAGGT 58.718 33.333 4.00 0.00 0.00 3.08
15 16 8.696043 TCAAAATTAGATCCCATGTTGATAGG 57.304 34.615 4.00 0.00 0.00 2.57
19 20 9.874205 GATTTTCAAAATTAGATCCCATGTTGA 57.126 29.630 0.00 4.00 0.00 3.18
20 21 9.880157 AGATTTTCAAAATTAGATCCCATGTTG 57.120 29.630 0.00 0.00 0.00 3.33
22 23 8.408601 CGAGATTTTCAAAATTAGATCCCATGT 58.591 33.333 0.00 0.00 0.00 3.21
23 24 8.623903 TCGAGATTTTCAAAATTAGATCCCATG 58.376 33.333 0.00 0.00 0.00 3.66
24 25 8.624776 GTCGAGATTTTCAAAATTAGATCCCAT 58.375 33.333 0.00 0.00 0.00 4.00
25 26 7.201609 CGTCGAGATTTTCAAAATTAGATCCCA 60.202 37.037 0.00 0.00 0.00 4.37
26 27 7.126398 CGTCGAGATTTTCAAAATTAGATCCC 58.874 38.462 0.00 0.00 0.00 3.85
27 28 6.629252 GCGTCGAGATTTTCAAAATTAGATCC 59.371 38.462 0.00 0.00 0.00 3.36
28 29 6.352030 CGCGTCGAGATTTTCAAAATTAGATC 59.648 38.462 0.00 0.00 0.00 2.75
29 30 6.035650 TCGCGTCGAGATTTTCAAAATTAGAT 59.964 34.615 5.77 0.00 0.00 1.98
30 31 5.346551 TCGCGTCGAGATTTTCAAAATTAGA 59.653 36.000 5.77 0.00 0.00 2.10
31 32 5.547341 TCGCGTCGAGATTTTCAAAATTAG 58.453 37.500 5.77 0.00 0.00 1.73
32 33 5.518529 TCGCGTCGAGATTTTCAAAATTA 57.481 34.783 5.77 0.00 0.00 1.40
33 34 4.398549 TCGCGTCGAGATTTTCAAAATT 57.601 36.364 5.77 0.00 0.00 1.82
34 35 4.092821 TCATCGCGTCGAGATTTTCAAAAT 59.907 37.500 8.88 0.00 39.91 1.82
35 36 3.430556 TCATCGCGTCGAGATTTTCAAAA 59.569 39.130 8.88 0.00 39.91 2.44
36 37 2.990514 TCATCGCGTCGAGATTTTCAAA 59.009 40.909 8.88 0.00 39.91 2.69
37 38 2.601804 TCATCGCGTCGAGATTTTCAA 58.398 42.857 8.88 0.00 39.91 2.69
38 39 2.271821 TCATCGCGTCGAGATTTTCA 57.728 45.000 8.88 0.00 39.91 2.69
39 40 3.843426 ATTCATCGCGTCGAGATTTTC 57.157 42.857 8.88 0.00 39.91 2.29
40 41 3.616821 TGAATTCATCGCGTCGAGATTTT 59.383 39.130 8.88 3.86 39.91 1.82
41 42 3.000322 GTGAATTCATCGCGTCGAGATTT 60.000 43.478 12.12 1.53 39.91 2.17
42 43 2.535984 GTGAATTCATCGCGTCGAGATT 59.464 45.455 12.12 6.79 39.91 2.40
43 44 2.120232 GTGAATTCATCGCGTCGAGAT 58.880 47.619 12.12 5.58 39.91 2.75
44 45 1.545759 GTGAATTCATCGCGTCGAGA 58.454 50.000 12.12 0.00 39.91 4.04
51 52 2.774007 CTTTCACCGTGAATTCATCGC 58.226 47.619 14.64 0.00 36.11 4.58
52 53 2.159430 TGCTTTCACCGTGAATTCATCG 59.841 45.455 14.64 15.73 36.11 3.84
53 54 3.189287 ACTGCTTTCACCGTGAATTCATC 59.811 43.478 14.64 4.81 36.11 2.92
54 55 3.149196 ACTGCTTTCACCGTGAATTCAT 58.851 40.909 14.64 0.00 36.11 2.57
55 56 2.571212 ACTGCTTTCACCGTGAATTCA 58.429 42.857 14.64 3.38 36.11 2.57
56 57 3.555518 GAACTGCTTTCACCGTGAATTC 58.444 45.455 14.64 10.91 36.11 2.17
57 58 2.032030 CGAACTGCTTTCACCGTGAATT 60.032 45.455 14.64 5.84 36.11 2.17
58 59 1.531149 CGAACTGCTTTCACCGTGAAT 59.469 47.619 14.64 0.00 36.11 2.57
59 60 0.934496 CGAACTGCTTTCACCGTGAA 59.066 50.000 9.99 9.99 34.03 3.18
60 61 0.103390 TCGAACTGCTTTCACCGTGA 59.897 50.000 0.00 0.00 33.24 4.35
61 62 0.508641 CTCGAACTGCTTTCACCGTG 59.491 55.000 0.00 0.00 33.24 4.94
62 63 0.387929 TCTCGAACTGCTTTCACCGT 59.612 50.000 0.00 0.00 33.24 4.83
63 64 1.714794 ATCTCGAACTGCTTTCACCG 58.285 50.000 0.00 0.00 33.24 4.94
64 65 3.365364 CCAAATCTCGAACTGCTTTCACC 60.365 47.826 0.00 0.00 33.24 4.02
65 66 3.498397 TCCAAATCTCGAACTGCTTTCAC 59.502 43.478 0.00 0.00 33.24 3.18
66 67 3.738982 TCCAAATCTCGAACTGCTTTCA 58.261 40.909 0.00 0.00 33.24 2.69
67 68 4.716943 CTTCCAAATCTCGAACTGCTTTC 58.283 43.478 0.00 0.00 0.00 2.62
68 69 3.057946 GCTTCCAAATCTCGAACTGCTTT 60.058 43.478 0.00 0.00 0.00 3.51
69 70 2.485814 GCTTCCAAATCTCGAACTGCTT 59.514 45.455 0.00 0.00 0.00 3.91
70 71 2.079925 GCTTCCAAATCTCGAACTGCT 58.920 47.619 0.00 0.00 0.00 4.24
71 72 1.806542 TGCTTCCAAATCTCGAACTGC 59.193 47.619 0.00 0.00 0.00 4.40
72 73 3.120060 CCTTGCTTCCAAATCTCGAACTG 60.120 47.826 0.00 0.00 0.00 3.16
73 74 3.077359 CCTTGCTTCCAAATCTCGAACT 58.923 45.455 0.00 0.00 0.00 3.01
74 75 2.814336 ACCTTGCTTCCAAATCTCGAAC 59.186 45.455 0.00 0.00 0.00 3.95
75 76 3.140325 ACCTTGCTTCCAAATCTCGAA 57.860 42.857 0.00 0.00 0.00 3.71
76 77 2.859165 ACCTTGCTTCCAAATCTCGA 57.141 45.000 0.00 0.00 0.00 4.04
77 78 3.253188 TCAAACCTTGCTTCCAAATCTCG 59.747 43.478 0.00 0.00 0.00 4.04
78 79 4.520492 TCTCAAACCTTGCTTCCAAATCTC 59.480 41.667 0.00 0.00 0.00 2.75
79 80 4.473444 TCTCAAACCTTGCTTCCAAATCT 58.527 39.130 0.00 0.00 0.00 2.40
80 81 4.520492 TCTCTCAAACCTTGCTTCCAAATC 59.480 41.667 0.00 0.00 0.00 2.17
81 82 4.473444 TCTCTCAAACCTTGCTTCCAAAT 58.527 39.130 0.00 0.00 0.00 2.32
82 83 3.897239 TCTCTCAAACCTTGCTTCCAAA 58.103 40.909 0.00 0.00 0.00 3.28
83 84 3.576078 TCTCTCAAACCTTGCTTCCAA 57.424 42.857 0.00 0.00 0.00 3.53
84 85 3.795688 ATCTCTCAAACCTTGCTTCCA 57.204 42.857 0.00 0.00 0.00 3.53
85 86 6.382608 GTTTTATCTCTCAAACCTTGCTTCC 58.617 40.000 0.00 0.00 0.00 3.46
86 87 6.080406 CGTTTTATCTCTCAAACCTTGCTTC 58.920 40.000 0.00 0.00 30.37 3.86
87 88 5.531287 ACGTTTTATCTCTCAAACCTTGCTT 59.469 36.000 0.00 0.00 30.37 3.91
88 89 5.063880 ACGTTTTATCTCTCAAACCTTGCT 58.936 37.500 0.00 0.00 30.37 3.91
89 90 5.358298 ACGTTTTATCTCTCAAACCTTGC 57.642 39.130 0.00 0.00 30.37 4.01
90 91 7.913297 TCAAAACGTTTTATCTCTCAAACCTTG 59.087 33.333 24.79 8.65 30.37 3.61
91 92 7.992008 TCAAAACGTTTTATCTCTCAAACCTT 58.008 30.769 24.79 0.00 30.37 3.50
92 93 7.562454 TCAAAACGTTTTATCTCTCAAACCT 57.438 32.000 24.79 0.00 30.37 3.50
93 94 8.797266 ATTCAAAACGTTTTATCTCTCAAACC 57.203 30.769 24.79 0.00 30.37 3.27
97 98 9.588774 CGTTTATTCAAAACGTTTTATCTCTCA 57.411 29.630 24.79 5.41 45.45 3.27
107 108 7.095691 TTCGTAGATCCGTTTATTCAAAACGTT 60.096 33.333 18.32 0.00 43.53 3.99
108 109 6.365789 TTCGTAGATCCGTTTATTCAAAACGT 59.634 34.615 18.32 4.51 43.53 3.99
109 110 6.754206 TTCGTAGATCCGTTTATTCAAAACG 58.246 36.000 14.30 14.30 44.14 3.60
110 111 8.938047 TTTTCGTAGATCCGTTTATTCAAAAC 57.062 30.769 0.00 0.00 35.04 2.43
133 134 4.141937 GCAACCTGAGAGTTTTCCCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
134 135 3.384789 GCAACCTGAGAGTTTTCCCTTTT 59.615 43.478 0.00 0.00 0.00 2.27
135 136 2.959030 GCAACCTGAGAGTTTTCCCTTT 59.041 45.455 0.00 0.00 0.00 3.11
136 137 2.587522 GCAACCTGAGAGTTTTCCCTT 58.412 47.619 0.00 0.00 0.00 3.95
137 138 1.543429 CGCAACCTGAGAGTTTTCCCT 60.543 52.381 0.00 0.00 0.00 4.20
138 139 0.875059 CGCAACCTGAGAGTTTTCCC 59.125 55.000 0.00 0.00 0.00 3.97
139 140 1.531578 GTCGCAACCTGAGAGTTTTCC 59.468 52.381 0.00 0.00 0.00 3.13
140 141 2.210116 TGTCGCAACCTGAGAGTTTTC 58.790 47.619 0.00 0.00 0.00 2.29
141 142 2.325583 TGTCGCAACCTGAGAGTTTT 57.674 45.000 0.00 0.00 0.00 2.43
142 143 2.213499 CTTGTCGCAACCTGAGAGTTT 58.787 47.619 0.00 0.00 0.00 2.66
143 144 1.139058 ACTTGTCGCAACCTGAGAGTT 59.861 47.619 0.00 0.00 0.00 3.01
144 145 0.753262 ACTTGTCGCAACCTGAGAGT 59.247 50.000 0.00 0.00 0.00 3.24
145 146 2.724977 TACTTGTCGCAACCTGAGAG 57.275 50.000 0.00 0.00 0.00 3.20
146 147 2.750948 GTTACTTGTCGCAACCTGAGA 58.249 47.619 0.00 0.00 0.00 3.27
147 148 1.455786 CGTTACTTGTCGCAACCTGAG 59.544 52.381 0.00 0.00 0.00 3.35
148 149 1.493772 CGTTACTTGTCGCAACCTGA 58.506 50.000 0.00 0.00 0.00 3.86
156 157 2.406024 ACATACAACGCGTTACTTGTCG 59.594 45.455 26.11 15.41 32.77 4.35
157 158 3.717830 CACATACAACGCGTTACTTGTC 58.282 45.455 26.11 0.00 32.77 3.18
158 159 2.096614 GCACATACAACGCGTTACTTGT 60.097 45.455 26.11 22.61 34.89 3.16
159 160 2.492001 GCACATACAACGCGTTACTTG 58.508 47.619 26.11 21.98 0.00 3.16
160 161 1.125384 CGCACATACAACGCGTTACTT 59.875 47.619 26.11 14.26 43.86 2.24
161 162 0.711670 CGCACATACAACGCGTTACT 59.288 50.000 26.11 15.05 43.86 2.24
162 163 3.177468 CGCACATACAACGCGTTAC 57.823 52.632 26.11 7.23 43.86 2.50
168 169 1.258427 CAAATGGCGCACATACAACG 58.742 50.000 10.83 0.00 39.40 4.10
169 170 2.346099 ACAAATGGCGCACATACAAC 57.654 45.000 10.83 0.00 39.40 3.32
170 171 2.670479 CAACAAATGGCGCACATACAA 58.330 42.857 10.83 0.00 39.40 2.41
171 172 1.668337 GCAACAAATGGCGCACATACA 60.668 47.619 10.83 0.00 39.40 2.29
172 173 0.991344 GCAACAAATGGCGCACATAC 59.009 50.000 10.83 0.00 39.40 2.39
173 174 0.600057 TGCAACAAATGGCGCACATA 59.400 45.000 10.83 0.00 39.40 2.29
174 175 0.249784 TTGCAACAAATGGCGCACAT 60.250 45.000 10.83 7.73 43.07 3.21
175 176 1.142531 TTGCAACAAATGGCGCACA 59.857 47.368 10.83 5.20 33.29 4.57
176 177 1.564139 GTTGCAACAAATGGCGCAC 59.436 52.632 24.52 0.00 33.29 5.34
177 178 1.593750 GGTTGCAACAAATGGCGCA 60.594 52.632 29.55 0.00 0.00 6.09
178 179 1.593750 TGGTTGCAACAAATGGCGC 60.594 52.632 29.55 11.13 0.00 6.53
179 180 1.547292 CGTGGTTGCAACAAATGGCG 61.547 55.000 29.55 15.22 0.00 5.69
180 181 1.220817 CCGTGGTTGCAACAAATGGC 61.221 55.000 29.55 12.55 0.00 4.40
181 182 0.599728 CCCGTGGTTGCAACAAATGG 60.600 55.000 29.55 27.08 0.00 3.16
182 183 0.387202 TCCCGTGGTTGCAACAAATG 59.613 50.000 29.55 20.86 0.00 2.32
183 184 0.673437 CTCCCGTGGTTGCAACAAAT 59.327 50.000 29.55 0.00 0.00 2.32
184 185 0.681564 ACTCCCGTGGTTGCAACAAA 60.682 50.000 29.55 15.37 0.00 2.83
185 186 0.681564 AACTCCCGTGGTTGCAACAA 60.682 50.000 29.55 17.93 0.00 2.83
186 187 1.077357 AACTCCCGTGGTTGCAACA 60.077 52.632 29.55 13.95 0.00 3.33
187 188 1.358759 CAACTCCCGTGGTTGCAAC 59.641 57.895 21.59 21.59 37.76 4.17
188 189 1.826054 CCAACTCCCGTGGTTGCAA 60.826 57.895 0.00 0.00 41.64 4.08
189 190 2.203280 CCAACTCCCGTGGTTGCA 60.203 61.111 0.00 0.00 41.64 4.08
190 191 1.966451 CTCCAACTCCCGTGGTTGC 60.966 63.158 0.00 0.00 41.64 4.17
191 192 0.884704 CACTCCAACTCCCGTGGTTG 60.885 60.000 0.00 0.00 42.35 3.77
192 193 1.052124 TCACTCCAACTCCCGTGGTT 61.052 55.000 0.00 0.00 0.00 3.67
193 194 0.836400 ATCACTCCAACTCCCGTGGT 60.836 55.000 0.00 0.00 0.00 4.16
194 195 0.108138 GATCACTCCAACTCCCGTGG 60.108 60.000 0.00 0.00 0.00 4.94
195 196 0.898320 AGATCACTCCAACTCCCGTG 59.102 55.000 0.00 0.00 0.00 4.94
196 197 1.645710 AAGATCACTCCAACTCCCGT 58.354 50.000 0.00 0.00 0.00 5.28
197 198 2.350522 CAAAGATCACTCCAACTCCCG 58.649 52.381 0.00 0.00 0.00 5.14
198 199 2.087646 GCAAAGATCACTCCAACTCCC 58.912 52.381 0.00 0.00 0.00 4.30
199 200 2.783135 TGCAAAGATCACTCCAACTCC 58.217 47.619 0.00 0.00 0.00 3.85
200 201 3.364366 CGTTGCAAAGATCACTCCAACTC 60.364 47.826 6.52 0.00 32.62 3.01
201 202 2.549754 CGTTGCAAAGATCACTCCAACT 59.450 45.455 6.52 0.00 32.62 3.16
202 203 2.548057 TCGTTGCAAAGATCACTCCAAC 59.452 45.455 11.22 2.67 0.00 3.77
203 204 2.807967 CTCGTTGCAAAGATCACTCCAA 59.192 45.455 15.52 0.00 0.00 3.53
204 205 2.224281 ACTCGTTGCAAAGATCACTCCA 60.224 45.455 15.52 0.00 0.00 3.86
205 206 2.417719 ACTCGTTGCAAAGATCACTCC 58.582 47.619 15.52 0.00 0.00 3.85
206 207 4.238514 AGTACTCGTTGCAAAGATCACTC 58.761 43.478 15.52 5.56 0.00 3.51
207 208 4.238514 GAGTACTCGTTGCAAAGATCACT 58.761 43.478 20.90 20.90 0.00 3.41
208 209 3.368236 GGAGTACTCGTTGCAAAGATCAC 59.632 47.826 15.52 14.91 0.00 3.06
209 210 3.258372 AGGAGTACTCGTTGCAAAGATCA 59.742 43.478 15.52 3.95 0.00 2.92
210 211 3.851098 AGGAGTACTCGTTGCAAAGATC 58.149 45.455 15.52 9.90 0.00 2.75
211 212 3.851098 GAGGAGTACTCGTTGCAAAGAT 58.149 45.455 18.54 8.63 36.29 2.40
212 213 3.299340 GAGGAGTACTCGTTGCAAAGA 57.701 47.619 18.54 14.45 36.29 2.52
222 223 7.481642 TCGAAATCACTAATTGAGGAGTACTC 58.518 38.462 14.87 14.87 46.78 2.59
223 224 7.406031 TCGAAATCACTAATTGAGGAGTACT 57.594 36.000 0.00 0.00 37.77 2.73
224 225 8.649973 AATCGAAATCACTAATTGAGGAGTAC 57.350 34.615 0.00 0.00 37.77 2.73
225 226 9.667107 AAAATCGAAATCACTAATTGAGGAGTA 57.333 29.630 0.00 0.00 37.77 2.59
226 227 8.567285 AAAATCGAAATCACTAATTGAGGAGT 57.433 30.769 0.00 0.00 37.77 3.85
228 229 8.612619 GCTAAAATCGAAATCACTAATTGAGGA 58.387 33.333 0.00 0.00 37.77 3.71
229 230 7.857885 GGCTAAAATCGAAATCACTAATTGAGG 59.142 37.037 0.00 0.00 37.77 3.86
230 231 8.616076 AGGCTAAAATCGAAATCACTAATTGAG 58.384 33.333 0.00 0.00 37.77 3.02
231 232 8.397906 CAGGCTAAAATCGAAATCACTAATTGA 58.602 33.333 0.00 0.00 39.11 2.57
232 233 8.184192 ACAGGCTAAAATCGAAATCACTAATTG 58.816 33.333 0.00 0.00 0.00 2.32
233 234 8.281212 ACAGGCTAAAATCGAAATCACTAATT 57.719 30.769 0.00 0.00 0.00 1.40
234 235 7.865706 ACAGGCTAAAATCGAAATCACTAAT 57.134 32.000 0.00 0.00 0.00 1.73
235 236 7.174253 ACAACAGGCTAAAATCGAAATCACTAA 59.826 33.333 0.00 0.00 0.00 2.24
236 237 6.653320 ACAACAGGCTAAAATCGAAATCACTA 59.347 34.615 0.00 0.00 0.00 2.74
237 238 5.473504 ACAACAGGCTAAAATCGAAATCACT 59.526 36.000 0.00 0.00 0.00 3.41
238 239 5.569059 CACAACAGGCTAAAATCGAAATCAC 59.431 40.000 0.00 0.00 0.00 3.06
239 240 5.698832 CACAACAGGCTAAAATCGAAATCA 58.301 37.500 0.00 0.00 0.00 2.57
240 241 4.558860 GCACAACAGGCTAAAATCGAAATC 59.441 41.667 0.00 0.00 0.00 2.17
241 242 4.485163 GCACAACAGGCTAAAATCGAAAT 58.515 39.130 0.00 0.00 0.00 2.17
242 243 3.608241 CGCACAACAGGCTAAAATCGAAA 60.608 43.478 0.00 0.00 0.00 3.46
243 244 2.095969 CGCACAACAGGCTAAAATCGAA 60.096 45.455 0.00 0.00 0.00 3.71
244 245 1.463056 CGCACAACAGGCTAAAATCGA 59.537 47.619 0.00 0.00 0.00 3.59
245 246 1.196808 ACGCACAACAGGCTAAAATCG 59.803 47.619 0.00 0.00 0.00 3.34
246 247 2.724839 CGACGCACAACAGGCTAAAATC 60.725 50.000 0.00 0.00 0.00 2.17
247 248 1.196808 CGACGCACAACAGGCTAAAAT 59.803 47.619 0.00 0.00 0.00 1.82
248 249 0.584396 CGACGCACAACAGGCTAAAA 59.416 50.000 0.00 0.00 0.00 1.52
249 250 1.225376 CCGACGCACAACAGGCTAAA 61.225 55.000 0.00 0.00 0.00 1.85
250 251 1.666553 CCGACGCACAACAGGCTAA 60.667 57.895 0.00 0.00 0.00 3.09
251 252 2.048597 CCGACGCACAACAGGCTA 60.049 61.111 0.00 0.00 0.00 3.93
252 253 4.235762 ACCGACGCACAACAGGCT 62.236 61.111 0.00 0.00 0.00 4.58
253 254 4.012895 CACCGACGCACAACAGGC 62.013 66.667 0.00 0.00 0.00 4.85
254 255 0.389296 TATCACCGACGCACAACAGG 60.389 55.000 0.00 0.00 0.00 4.00
255 256 1.390123 CTTATCACCGACGCACAACAG 59.610 52.381 0.00 0.00 0.00 3.16
256 257 1.424403 CTTATCACCGACGCACAACA 58.576 50.000 0.00 0.00 0.00 3.33
257 258 0.719465 CCTTATCACCGACGCACAAC 59.281 55.000 0.00 0.00 0.00 3.32
258 259 0.604073 TCCTTATCACCGACGCACAA 59.396 50.000 0.00 0.00 0.00 3.33
259 260 0.172578 CTCCTTATCACCGACGCACA 59.827 55.000 0.00 0.00 0.00 4.57
260 261 0.527817 CCTCCTTATCACCGACGCAC 60.528 60.000 0.00 0.00 0.00 5.34
261 262 0.681887 TCCTCCTTATCACCGACGCA 60.682 55.000 0.00 0.00 0.00 5.24
262 263 0.458669 TTCCTCCTTATCACCGACGC 59.541 55.000 0.00 0.00 0.00 5.19
263 264 2.165845 AGTTTCCTCCTTATCACCGACG 59.834 50.000 0.00 0.00 0.00 5.12
264 265 3.889520 AGTTTCCTCCTTATCACCGAC 57.110 47.619 0.00 0.00 0.00 4.79
265 266 3.835978 TGAAGTTTCCTCCTTATCACCGA 59.164 43.478 0.00 0.00 0.00 4.69
266 267 4.081642 TCTGAAGTTTCCTCCTTATCACCG 60.082 45.833 0.00 0.00 0.00 4.94
267 268 5.422214 TCTGAAGTTTCCTCCTTATCACC 57.578 43.478 0.00 0.00 0.00 4.02
268 269 7.929941 AAATCTGAAGTTTCCTCCTTATCAC 57.070 36.000 0.00 0.00 0.00 3.06
271 272 9.981460 ACATAAAATCTGAAGTTTCCTCCTTAT 57.019 29.630 0.00 0.00 0.00 1.73
272 273 9.449719 GACATAAAATCTGAAGTTTCCTCCTTA 57.550 33.333 0.00 0.00 0.00 2.69
273 274 7.394641 GGACATAAAATCTGAAGTTTCCTCCTT 59.605 37.037 0.00 0.00 0.00 3.36
274 275 6.887002 GGACATAAAATCTGAAGTTTCCTCCT 59.113 38.462 0.00 0.00 0.00 3.69
275 276 6.659242 TGGACATAAAATCTGAAGTTTCCTCC 59.341 38.462 0.00 0.00 0.00 4.30
276 277 7.687941 TGGACATAAAATCTGAAGTTTCCTC 57.312 36.000 0.00 0.00 0.00 3.71
277 278 8.655935 ATTGGACATAAAATCTGAAGTTTCCT 57.344 30.769 0.00 0.00 0.00 3.36
301 302 9.553064 GGTGTCAATCATCAAAAGTAGATCTAT 57.447 33.333 5.57 0.00 0.00 1.98
302 303 8.762645 AGGTGTCAATCATCAAAAGTAGATCTA 58.237 33.333 0.00 0.00 0.00 1.98
303 304 7.628234 AGGTGTCAATCATCAAAAGTAGATCT 58.372 34.615 0.00 0.00 0.00 2.75
304 305 7.254252 CGAGGTGTCAATCATCAAAAGTAGATC 60.254 40.741 0.00 0.00 0.00 2.75
305 306 6.536582 CGAGGTGTCAATCATCAAAAGTAGAT 59.463 38.462 0.00 0.00 0.00 1.98
306 307 5.869344 CGAGGTGTCAATCATCAAAAGTAGA 59.131 40.000 0.00 0.00 0.00 2.59
307 308 5.446473 GCGAGGTGTCAATCATCAAAAGTAG 60.446 44.000 0.00 0.00 0.00 2.57
308 309 4.391830 GCGAGGTGTCAATCATCAAAAGTA 59.608 41.667 0.00 0.00 0.00 2.24
309 310 3.189287 GCGAGGTGTCAATCATCAAAAGT 59.811 43.478 0.00 0.00 0.00 2.66
310 311 3.725895 CGCGAGGTGTCAATCATCAAAAG 60.726 47.826 0.00 0.00 0.00 2.27
311 312 2.159430 CGCGAGGTGTCAATCATCAAAA 59.841 45.455 0.00 0.00 0.00 2.44
312 313 1.731709 CGCGAGGTGTCAATCATCAAA 59.268 47.619 0.00 0.00 0.00 2.69
313 314 1.358877 CGCGAGGTGTCAATCATCAA 58.641 50.000 0.00 0.00 0.00 2.57
314 315 3.049227 CGCGAGGTGTCAATCATCA 57.951 52.632 0.00 0.00 0.00 3.07
338 339 5.115472 GTGTATTGGCGCGAATATTTTGATG 59.885 40.000 24.66 0.00 0.00 3.07
594 603 1.450312 CGTGGAGATTGGTGAGGCC 60.450 63.158 0.00 0.00 37.90 5.19
689 699 3.587506 AGTGGAAACCATGCTACTTAGGT 59.412 43.478 0.00 0.00 35.28 3.08
711 721 2.238646 AGTGCCAGGTCGATTAATTGGA 59.761 45.455 7.21 0.00 0.00 3.53
744 754 7.096551 GGACCTTGAGAGATTAATCTATGAGC 58.903 42.308 17.07 5.27 37.25 4.26
745 755 8.187913 TGGACCTTGAGAGATTAATCTATGAG 57.812 38.462 17.07 13.33 37.25 2.90
746 756 7.256119 GCTGGACCTTGAGAGATTAATCTATGA 60.256 40.741 17.07 6.23 37.25 2.15
747 757 6.873076 GCTGGACCTTGAGAGATTAATCTATG 59.127 42.308 17.07 5.59 37.25 2.23
752 762 5.707066 AAGCTGGACCTTGAGAGATTAAT 57.293 39.130 0.00 0.00 0.00 1.40
757 767 3.198635 CCATTAAGCTGGACCTTGAGAGA 59.801 47.826 0.00 0.00 38.69 3.10
759 769 2.356125 GCCATTAAGCTGGACCTTGAGA 60.356 50.000 0.00 0.00 38.69 3.27
801 814 1.745566 TCGTACGTCGAAACACACAG 58.254 50.000 16.05 0.00 45.98 3.66
811 828 1.003116 CCATCTAGGGTTCGTACGTCG 60.003 57.143 16.05 0.00 41.41 5.12
816 833 1.117150 GGTGCCATCTAGGGTTCGTA 58.883 55.000 0.00 0.00 38.09 3.43
890 920 5.221843 ACCCTGCTTGTTAATGACTAACTCA 60.222 40.000 0.00 0.00 40.62 3.41
897 953 5.392057 GCTAGAAACCCTGCTTGTTAATGAC 60.392 44.000 0.00 0.00 0.00 3.06
898 954 4.700213 GCTAGAAACCCTGCTTGTTAATGA 59.300 41.667 0.00 0.00 0.00 2.57
947 1007 2.341911 GGCTAGGGCTGCTCGATC 59.658 66.667 0.00 0.00 38.73 3.69
948 1008 3.237741 GGGCTAGGGCTGCTCGAT 61.238 66.667 0.00 0.00 38.73 3.59
949 1009 4.777854 TGGGCTAGGGCTGCTCGA 62.778 66.667 0.00 0.00 38.73 4.04
950 1010 4.232878 CTGGGCTAGGGCTGCTCG 62.233 72.222 0.00 0.00 38.73 5.03
951 1011 4.560743 GCTGGGCTAGGGCTGCTC 62.561 72.222 0.00 0.00 38.73 4.26
952 1012 3.703513 TAGCTGGGCTAGGGCTGCT 62.704 63.158 0.00 13.42 40.44 4.24
953 1013 3.164269 TAGCTGGGCTAGGGCTGC 61.164 66.667 0.00 0.00 40.44 5.25
960 1020 5.686650 GCCAAGTAATTAACTAGCTGGGCTA 60.687 44.000 10.02 0.00 40.44 3.93
1242 1305 0.463295 TCCAGTACTCGTAGCCCTCG 60.463 60.000 0.00 0.00 0.00 4.63
1284 1347 4.514577 CTGCTGTAGACCCCGGCG 62.515 72.222 0.00 0.00 36.99 6.46
1285 1348 4.162690 CCTGCTGTAGACCCCGGC 62.163 72.222 0.00 0.00 34.71 6.13
1286 1349 0.759436 ATACCTGCTGTAGACCCCGG 60.759 60.000 0.00 0.00 31.61 5.73
1410 1476 1.203523 GCATCTCTCACTCTCAACCGT 59.796 52.381 0.00 0.00 0.00 4.83
1473 1558 0.947244 CTCAACAGTCAACACCAGGC 59.053 55.000 0.00 0.00 0.00 4.85
1629 1714 2.430694 GAGGTTTTTACCCATCCATGGC 59.569 50.000 6.96 0.00 46.70 4.40
1637 1722 2.967201 TGAGAGACGAGGTTTTTACCCA 59.033 45.455 0.00 0.00 0.00 4.51
1734 1819 5.675538 ACACCTCTCATAGAAGGTTATTGC 58.324 41.667 0.00 0.00 31.38 3.56
1771 1856 9.965824 ATAATCTCAACAAAAACTTTGTGGTAG 57.034 29.630 5.58 4.59 32.22 3.18
1773 1858 9.097257 CAATAATCTCAACAAAAACTTTGTGGT 57.903 29.630 5.58 0.00 32.22 4.16
1774 1859 9.097257 ACAATAATCTCAACAAAAACTTTGTGG 57.903 29.630 5.58 3.19 32.22 4.17
1775 1860 9.904647 CACAATAATCTCAACAAAAACTTTGTG 57.095 29.630 5.58 0.00 34.94 3.33
1776 1861 9.097257 CCACAATAATCTCAACAAAAACTTTGT 57.903 29.630 0.00 0.00 0.00 2.83
1777 1862 9.311916 TCCACAATAATCTCAACAAAAACTTTG 57.688 29.630 0.00 0.00 0.00 2.77
1779 1864 9.480053 CATCCACAATAATCTCAACAAAAACTT 57.520 29.630 0.00 0.00 0.00 2.66
1780 1865 8.090214 CCATCCACAATAATCTCAACAAAAACT 58.910 33.333 0.00 0.00 0.00 2.66
1781 1866 7.872483 ACCATCCACAATAATCTCAACAAAAAC 59.128 33.333 0.00 0.00 0.00 2.43
1782 1867 7.961351 ACCATCCACAATAATCTCAACAAAAA 58.039 30.769 0.00 0.00 0.00 1.94
1784 1869 6.947733 AGACCATCCACAATAATCTCAACAAA 59.052 34.615 0.00 0.00 0.00 2.83
1785 1870 6.484288 AGACCATCCACAATAATCTCAACAA 58.516 36.000 0.00 0.00 0.00 2.83
1787 1872 7.047891 TGTAGACCATCCACAATAATCTCAAC 58.952 38.462 0.00 0.00 0.00 3.18
1788 1873 7.194112 TGTAGACCATCCACAATAATCTCAA 57.806 36.000 0.00 0.00 0.00 3.02
1789 1874 6.806668 TGTAGACCATCCACAATAATCTCA 57.193 37.500 0.00 0.00 0.00 3.27
1790 1875 8.682936 AAATGTAGACCATCCACAATAATCTC 57.317 34.615 0.00 0.00 31.75 2.75
1791 1876 9.784531 CTAAATGTAGACCATCCACAATAATCT 57.215 33.333 0.00 0.00 31.75 2.40
1792 1877 9.561069 ACTAAATGTAGACCATCCACAATAATC 57.439 33.333 0.00 0.00 31.75 1.75
1793 1878 9.342308 CACTAAATGTAGACCATCCACAATAAT 57.658 33.333 0.00 0.00 31.75 1.28
1794 1879 8.544622 TCACTAAATGTAGACCATCCACAATAA 58.455 33.333 0.00 0.00 31.75 1.40
1795 1880 7.985184 GTCACTAAATGTAGACCATCCACAATA 59.015 37.037 0.00 0.00 31.75 1.90
1796 1881 6.823689 GTCACTAAATGTAGACCATCCACAAT 59.176 38.462 0.00 0.00 31.75 2.71
1797 1882 6.170506 GTCACTAAATGTAGACCATCCACAA 58.829 40.000 0.00 0.00 31.75 3.33
1798 1883 5.247337 TGTCACTAAATGTAGACCATCCACA 59.753 40.000 0.00 0.00 31.75 4.17
1799 1884 5.730550 TGTCACTAAATGTAGACCATCCAC 58.269 41.667 0.00 0.00 31.75 4.02
1800 1885 6.367374 TTGTCACTAAATGTAGACCATCCA 57.633 37.500 0.00 0.00 31.75 3.41
1801 1886 6.823689 ACATTGTCACTAAATGTAGACCATCC 59.176 38.462 0.00 0.00 44.41 3.51
1802 1887 7.011482 GGACATTGTCACTAAATGTAGACCATC 59.989 40.741 18.09 0.00 45.81 3.51
1803 1888 6.823689 GGACATTGTCACTAAATGTAGACCAT 59.176 38.462 18.09 0.00 45.81 3.55
1804 1889 6.013725 AGGACATTGTCACTAAATGTAGACCA 60.014 38.462 18.09 0.00 45.81 4.02
1805 1890 6.407202 AGGACATTGTCACTAAATGTAGACC 58.593 40.000 18.09 0.78 45.81 3.85
1806 1891 7.819900 AGAAGGACATTGTCACTAAATGTAGAC 59.180 37.037 18.09 0.00 45.81 2.59
1807 1892 7.907389 AGAAGGACATTGTCACTAAATGTAGA 58.093 34.615 18.09 0.00 45.81 2.59
1808 1893 9.823647 ATAGAAGGACATTGTCACTAAATGTAG 57.176 33.333 18.09 0.00 45.81 2.74
1809 1894 9.599866 CATAGAAGGACATTGTCACTAAATGTA 57.400 33.333 18.09 3.08 45.81 2.29
1811 1896 8.722480 TCATAGAAGGACATTGTCACTAAATG 57.278 34.615 18.09 14.13 40.23 2.32
1812 1897 8.762645 TCTCATAGAAGGACATTGTCACTAAAT 58.237 33.333 18.09 3.74 33.68 1.40
1813 1898 8.134202 TCTCATAGAAGGACATTGTCACTAAA 57.866 34.615 18.09 9.65 33.68 1.85
1814 1899 7.147828 CCTCTCATAGAAGGACATTGTCACTAA 60.148 40.741 18.09 0.56 33.68 2.24
1815 1900 6.322456 CCTCTCATAGAAGGACATTGTCACTA 59.678 42.308 18.09 16.17 33.68 2.74
1816 1901 5.128499 CCTCTCATAGAAGGACATTGTCACT 59.872 44.000 18.09 14.78 33.68 3.41
1817 1902 5.127845 TCCTCTCATAGAAGGACATTGTCAC 59.872 44.000 18.09 7.94 33.68 3.67
1818 1903 5.272402 TCCTCTCATAGAAGGACATTGTCA 58.728 41.667 18.09 0.00 33.68 3.58
1819 1904 5.362430 ACTCCTCTCATAGAAGGACATTGTC 59.638 44.000 8.34 8.34 0.00 3.18
1820 1905 5.276440 ACTCCTCTCATAGAAGGACATTGT 58.724 41.667 0.00 0.00 0.00 2.71
1821 1906 5.867903 ACTCCTCTCATAGAAGGACATTG 57.132 43.478 0.00 0.00 0.00 2.82
1822 1907 6.436027 TGTACTCCTCTCATAGAAGGACATT 58.564 40.000 0.00 0.00 24.65 2.71
1823 1908 6.019656 TGTACTCCTCTCATAGAAGGACAT 57.980 41.667 0.00 0.00 24.65 3.06
1824 1909 5.452341 TGTACTCCTCTCATAGAAGGACA 57.548 43.478 0.00 0.00 26.58 4.02
1825 1910 6.378848 ACTTTGTACTCCTCTCATAGAAGGAC 59.621 42.308 0.00 0.00 0.00 3.85
1826 1911 6.494952 ACTTTGTACTCCTCTCATAGAAGGA 58.505 40.000 0.00 0.00 0.00 3.36
1827 1912 6.783708 ACTTTGTACTCCTCTCATAGAAGG 57.216 41.667 0.00 0.00 0.00 3.46
1828 1913 9.495572 AAAAACTTTGTACTCCTCTCATAGAAG 57.504 33.333 0.00 0.00 0.00 2.85
1829 1914 9.273016 CAAAAACTTTGTACTCCTCTCATAGAA 57.727 33.333 0.00 0.00 0.00 2.10
1830 1915 8.429641 ACAAAAACTTTGTACTCCTCTCATAGA 58.570 33.333 2.99 0.00 0.00 1.98
1831 1916 8.608844 ACAAAAACTTTGTACTCCTCTCATAG 57.391 34.615 2.99 0.00 0.00 2.23
1832 1917 8.836413 CAACAAAAACTTTGTACTCCTCTCATA 58.164 33.333 5.26 0.00 31.50 2.15
1833 1918 7.556275 TCAACAAAAACTTTGTACTCCTCTCAT 59.444 33.333 5.26 0.00 31.50 2.90
1834 1919 6.882140 TCAACAAAAACTTTGTACTCCTCTCA 59.118 34.615 5.26 0.00 31.50 3.27
1835 1920 7.280205 TCTCAACAAAAACTTTGTACTCCTCTC 59.720 37.037 5.26 0.00 31.50 3.20
1836 1921 7.110155 TCTCAACAAAAACTTTGTACTCCTCT 58.890 34.615 5.26 0.00 31.50 3.69
1837 1922 7.316544 TCTCAACAAAAACTTTGTACTCCTC 57.683 36.000 5.26 0.00 31.50 3.71
1838 1923 7.881775 ATCTCAACAAAAACTTTGTACTCCT 57.118 32.000 5.26 0.00 31.50 3.69
1951 2038 8.737168 ATTGCAGCTGTTTATTCTCTATACAA 57.263 30.769 16.64 5.87 0.00 2.41
1972 2059 5.530519 TTGACGACTTACATCAGAATTGC 57.469 39.130 0.00 0.00 0.00 3.56
2060 4657 4.590647 TCCATCATCCTAGGAGCTTACAAG 59.409 45.833 18.34 1.38 0.00 3.16
2061 4658 4.556697 TCCATCATCCTAGGAGCTTACAA 58.443 43.478 18.34 0.00 0.00 2.41
2062 4659 4.199002 TCCATCATCCTAGGAGCTTACA 57.801 45.455 18.34 0.00 0.00 2.41
2063 4660 5.337578 GATCCATCATCCTAGGAGCTTAC 57.662 47.826 18.34 0.46 35.08 2.34
2075 4672 2.491693 GAGAGACTCCGGATCCATCATC 59.508 54.545 13.41 3.77 0.00 2.92
2076 4673 2.158400 TGAGAGACTCCGGATCCATCAT 60.158 50.000 13.41 0.00 0.00 2.45
2077 4674 1.215423 TGAGAGACTCCGGATCCATCA 59.785 52.381 13.41 9.14 0.00 3.07
2078 4675 1.885887 CTGAGAGACTCCGGATCCATC 59.114 57.143 13.41 6.78 0.00 3.51
2079 4676 1.993956 CTGAGAGACTCCGGATCCAT 58.006 55.000 13.41 0.00 0.00 3.41
2080 4677 0.753479 GCTGAGAGACTCCGGATCCA 60.753 60.000 13.41 0.00 0.00 3.41
2081 4678 0.467290 AGCTGAGAGACTCCGGATCC 60.467 60.000 3.57 0.00 0.00 3.36
2082 4679 1.398692 AAGCTGAGAGACTCCGGATC 58.601 55.000 3.57 5.11 0.00 3.36
2083 4680 1.859302 AAAGCTGAGAGACTCCGGAT 58.141 50.000 3.57 0.00 0.00 4.18
2084 4681 1.273606 CAAAAGCTGAGAGACTCCGGA 59.726 52.381 2.93 2.93 0.00 5.14
2085 4682 1.719600 CAAAAGCTGAGAGACTCCGG 58.280 55.000 0.00 0.00 0.00 5.14
2157 4754 1.133668 GCAGAATGAGCTACCCCCAAT 60.134 52.381 0.00 0.00 39.69 3.16
2183 4780 5.163663 GGAAACACGGCAATTCATGATCTAA 60.164 40.000 0.00 0.00 0.00 2.10
2198 4795 2.156917 GGAACTTAAGGGGAAACACGG 58.843 52.381 7.53 0.00 40.46 4.94
2256 4854 6.676990 AAAGAGAGCATCCTTTCCAATTTT 57.323 33.333 0.00 0.00 32.59 1.82
2288 4889 8.320617 AGCTCTTCTCTTTCTTATTCAGTCATT 58.679 33.333 0.00 0.00 0.00 2.57
2301 4902 1.404851 CGGTGGGAGCTCTTCTCTTTC 60.405 57.143 14.64 0.00 41.60 2.62
2320 4921 1.734047 CGGGCTCAGAGAAGACTTTCG 60.734 57.143 0.00 0.00 38.38 3.46
2353 4954 3.630312 GGTAACCACTGAAAGCTTGTGAA 59.370 43.478 15.07 0.61 37.60 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.