Multiple sequence alignment - TraesCS4A01G014000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G014000 chr4A 100.000 2591 0 0 1 2591 8581454 8584044 0.000000e+00 4785.0
1 TraesCS4A01G014000 chr4A 90.535 243 22 1 50 291 595547025 595547267 1.320000e-83 320.0
2 TraesCS4A01G014000 chr4A 100.000 122 0 0 2825 2946 8584278 8584399 2.950000e-55 226.0
3 TraesCS4A01G014000 chr4B 94.409 1091 42 5 536 1614 574530917 574529834 0.000000e+00 1659.0
4 TraesCS4A01G014000 chr4B 93.402 682 30 8 1695 2369 574529836 574529163 0.000000e+00 996.0
5 TraesCS4A01G014000 chr4B 90.234 256 9 6 298 541 574531200 574530949 1.320000e-83 320.0
6 TraesCS4A01G014000 chr4B 92.661 218 15 1 2373 2589 574529095 574528878 2.200000e-81 313.0
7 TraesCS4A01G014000 chr4B 96.809 94 2 1 1605 1697 548118247 548118340 3.930000e-34 156.0
8 TraesCS4A01G014000 chr4B 97.368 38 1 0 4 41 574531236 574531199 6.820000e-07 65.8
9 TraesCS4A01G014000 chr4D 93.908 673 33 4 1695 2362 459588949 459588280 0.000000e+00 1009.0
10 TraesCS4A01G014000 chr4D 91.462 691 48 8 930 1614 459589632 459588947 0.000000e+00 939.0
11 TraesCS4A01G014000 chr4D 90.496 242 22 1 49 289 349216948 349216707 4.740000e-83 318.0
12 TraesCS4A01G014000 chr4D 78.437 371 40 20 536 871 459589999 459589634 3.850000e-49 206.0
13 TraesCS4A01G014000 chr4D 88.889 117 10 3 1583 1697 498897931 498898046 1.100000e-29 141.0
14 TraesCS4A01G014000 chr6A 92.213 244 18 1 49 291 351609156 351609399 7.820000e-91 344.0
15 TraesCS4A01G014000 chr6A 97.778 90 2 0 1610 1699 204478640 204478551 3.930000e-34 156.0
16 TraesCS4A01G014000 chr5D 91.286 241 19 2 50 289 101660523 101660762 7.870000e-86 327.0
17 TraesCS4A01G014000 chrUn 90.871 241 20 2 50 289 91756356 91756595 3.660000e-84 322.0
18 TraesCS4A01G014000 chr7D 90.871 241 20 2 50 289 137681605 137681844 3.660000e-84 322.0
19 TraesCS4A01G014000 chr7D 92.453 106 8 0 2833 2938 28438291 28438186 5.090000e-33 152.0
20 TraesCS4A01G014000 chr6D 90.871 241 21 1 50 289 23829187 23828947 3.660000e-84 322.0
21 TraesCS4A01G014000 chr5A 90.871 241 20 2 50 289 301255847 301255608 3.660000e-84 322.0
22 TraesCS4A01G014000 chr5A 95.833 96 4 0 1604 1699 505136308 505136403 3.930000e-34 156.0
23 TraesCS4A01G014000 chr5A 91.509 106 7 2 2833 2938 227863933 227863830 8.510000e-31 145.0
24 TraesCS4A01G014000 chr2A 89.837 246 24 1 50 294 621963311 621963556 6.130000e-82 315.0
25 TraesCS4A01G014000 chr2A 95.283 106 2 1 2833 2938 159869371 159869269 6.530000e-37 165.0
26 TraesCS4A01G014000 chr2A 95.238 105 3 2 2833 2937 273025476 273025374 6.530000e-37 165.0
27 TraesCS4A01G014000 chr2A 93.396 106 6 1 2833 2938 535254899 535255003 3.930000e-34 156.0
28 TraesCS4A01G014000 chr2A 91.589 107 6 3 2833 2938 751417996 751417892 8.510000e-31 145.0
29 TraesCS4A01G014000 chr7A 95.050 101 5 0 2838 2938 717409417 717409317 3.040000e-35 159.0
30 TraesCS4A01G014000 chr7A 92.523 107 5 1 2833 2939 44231826 44231929 1.830000e-32 150.0
31 TraesCS4A01G014000 chr2B 95.918 98 3 1 1612 1709 480925382 480925286 1.090000e-34 158.0
32 TraesCS4A01G014000 chr6B 96.809 94 2 1 1605 1697 280098717 280098624 3.930000e-34 156.0
33 TraesCS4A01G014000 chr3D 94.898 98 3 2 1605 1700 331017954 331018051 5.090000e-33 152.0
34 TraesCS4A01G014000 chr3A 92.593 108 5 2 2833 2940 60810137 60810033 5.090000e-33 152.0
35 TraesCS4A01G014000 chr1B 93.269 104 6 1 1605 1708 449749068 449749170 5.090000e-33 152.0
36 TraesCS4A01G014000 chr2D 93.204 103 6 1 1596 1697 650861496 650861394 1.830000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G014000 chr4A 8581454 8584399 2945 False 2505.50 4785 100.000000 1 2946 2 chr4A.!!$F2 2945
1 TraesCS4A01G014000 chr4B 574528878 574531236 2358 True 670.76 1659 93.614800 4 2589 5 chr4B.!!$R1 2585
2 TraesCS4A01G014000 chr4D 459588280 459589999 1719 True 718.00 1009 87.935667 536 2362 3 chr4D.!!$R2 1826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 485 0.032678 CCCTGGACAGAATCGATCCG 59.967 60.0 0.0 0.0 35.06 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 2569 0.179234 TGCTGGTGGAGAACAACGAA 59.821 50.0 0.0 0.0 40.67 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.965363 AAATAACCGTGCAGGCCCAG 60.965 55.000 0.00 0.00 46.52 4.45
42 43 1.847798 AATAACCGTGCAGGCCCAGA 61.848 55.000 0.00 0.00 46.52 3.86
43 44 1.847798 ATAACCGTGCAGGCCCAGAA 61.848 55.000 0.00 0.00 46.52 3.02
44 45 2.463589 TAACCGTGCAGGCCCAGAAG 62.464 60.000 0.00 0.00 46.52 2.85
45 46 4.020617 CCGTGCAGGCCCAGAAGA 62.021 66.667 0.00 0.00 0.00 2.87
46 47 2.032528 CGTGCAGGCCCAGAAGAA 59.967 61.111 0.00 0.00 0.00 2.52
47 48 2.328099 CGTGCAGGCCCAGAAGAAC 61.328 63.158 0.00 0.00 0.00 3.01
48 49 1.973812 GTGCAGGCCCAGAAGAACC 60.974 63.158 0.00 0.00 0.00 3.62
49 50 2.156098 TGCAGGCCCAGAAGAACCT 61.156 57.895 0.00 0.00 0.00 3.50
50 51 0.840288 TGCAGGCCCAGAAGAACCTA 60.840 55.000 0.00 0.00 0.00 3.08
51 52 0.393132 GCAGGCCCAGAAGAACCTAC 60.393 60.000 0.00 0.00 0.00 3.18
52 53 1.280457 CAGGCCCAGAAGAACCTACT 58.720 55.000 0.00 0.00 0.00 2.57
53 54 1.208293 CAGGCCCAGAAGAACCTACTC 59.792 57.143 0.00 0.00 0.00 2.59
54 55 0.542333 GGCCCAGAAGAACCTACTCC 59.458 60.000 0.00 0.00 0.00 3.85
55 56 0.542333 GCCCAGAAGAACCTACTCCC 59.458 60.000 0.00 0.00 0.00 4.30
56 57 1.902141 GCCCAGAAGAACCTACTCCCT 60.902 57.143 0.00 0.00 0.00 4.20
57 58 2.552367 CCCAGAAGAACCTACTCCCTT 58.448 52.381 0.00 0.00 0.00 3.95
58 59 2.502130 CCCAGAAGAACCTACTCCCTTC 59.498 54.545 0.00 0.00 36.26 3.46
59 60 3.445987 CCAGAAGAACCTACTCCCTTCT 58.554 50.000 0.00 0.00 44.19 2.85
60 61 3.841255 CCAGAAGAACCTACTCCCTTCTT 59.159 47.826 0.00 0.00 42.22 2.52
61 62 4.081365 CCAGAAGAACCTACTCCCTTCTTC 60.081 50.000 10.17 10.17 45.48 2.87
62 63 4.081365 CAGAAGAACCTACTCCCTTCTTCC 60.081 50.000 13.29 0.59 45.95 3.46
63 64 3.562108 AGAACCTACTCCCTTCTTCCA 57.438 47.619 0.00 0.00 0.00 3.53
64 65 4.081695 AGAACCTACTCCCTTCTTCCAT 57.918 45.455 0.00 0.00 0.00 3.41
65 66 4.034410 AGAACCTACTCCCTTCTTCCATC 58.966 47.826 0.00 0.00 0.00 3.51
66 67 3.786213 ACCTACTCCCTTCTTCCATCT 57.214 47.619 0.00 0.00 0.00 2.90
67 68 4.901785 ACCTACTCCCTTCTTCCATCTA 57.098 45.455 0.00 0.00 0.00 1.98
68 69 5.426325 ACCTACTCCCTTCTTCCATCTAT 57.574 43.478 0.00 0.00 0.00 1.98
69 70 6.547396 ACCTACTCCCTTCTTCCATCTATA 57.453 41.667 0.00 0.00 0.00 1.31
70 71 7.122311 ACCTACTCCCTTCTTCCATCTATAT 57.878 40.000 0.00 0.00 0.00 0.86
71 72 8.245929 ACCTACTCCCTTCTTCCATCTATATA 57.754 38.462 0.00 0.00 0.00 0.86
72 73 8.340757 ACCTACTCCCTTCTTCCATCTATATAG 58.659 40.741 3.10 3.10 0.00 1.31
73 74 7.782644 CCTACTCCCTTCTTCCATCTATATAGG 59.217 44.444 9.89 0.00 0.00 2.57
74 75 6.507568 ACTCCCTTCTTCCATCTATATAGGG 58.492 44.000 9.89 4.49 41.98 3.53
75 76 6.048563 ACTCCCTTCTTCCATCTATATAGGGT 59.951 42.308 9.89 0.00 41.47 4.34
76 77 6.503944 TCCCTTCTTCCATCTATATAGGGTC 58.496 44.000 9.89 0.00 41.47 4.46
77 78 6.280649 TCCCTTCTTCCATCTATATAGGGTCT 59.719 42.308 9.89 0.00 41.47 3.85
78 79 7.467846 TCCCTTCTTCCATCTATATAGGGTCTA 59.532 40.741 9.89 0.00 41.47 2.59
79 80 8.123130 CCCTTCTTCCATCTATATAGGGTCTAA 58.877 40.741 9.89 0.00 37.01 2.10
80 81 9.722317 CCTTCTTCCATCTATATAGGGTCTAAT 57.278 37.037 9.89 0.00 0.00 1.73
83 84 9.848710 TCTTCCATCTATATAGGGTCTAATACG 57.151 37.037 9.89 0.00 0.00 3.06
84 85 9.629878 CTTCCATCTATATAGGGTCTAATACGT 57.370 37.037 9.89 0.00 0.00 3.57
85 86 9.986157 TTCCATCTATATAGGGTCTAATACGTT 57.014 33.333 9.89 0.00 0.00 3.99
86 87 9.986157 TCCATCTATATAGGGTCTAATACGTTT 57.014 33.333 9.89 0.00 0.00 3.60
93 94 4.840271 AGGGTCTAATACGTTTTTCAGGG 58.160 43.478 0.00 0.00 0.00 4.45
94 95 3.376234 GGGTCTAATACGTTTTTCAGGGC 59.624 47.826 0.00 0.00 0.00 5.19
95 96 3.376234 GGTCTAATACGTTTTTCAGGGCC 59.624 47.826 0.00 0.00 0.00 5.80
96 97 3.063045 GTCTAATACGTTTTTCAGGGCCG 59.937 47.826 0.00 0.00 0.00 6.13
97 98 0.524414 AATACGTTTTTCAGGGCCGC 59.476 50.000 0.00 0.00 0.00 6.53
98 99 0.322187 ATACGTTTTTCAGGGCCGCT 60.322 50.000 0.00 0.00 0.00 5.52
99 100 0.535553 TACGTTTTTCAGGGCCGCTT 60.536 50.000 0.00 0.00 0.00 4.68
100 101 1.362355 CGTTTTTCAGGGCCGCTTT 59.638 52.632 0.00 0.00 0.00 3.51
101 102 0.249280 CGTTTTTCAGGGCCGCTTTT 60.249 50.000 0.00 0.00 0.00 2.27
102 103 1.001158 CGTTTTTCAGGGCCGCTTTTA 60.001 47.619 0.00 0.00 0.00 1.52
103 104 2.544069 CGTTTTTCAGGGCCGCTTTTAA 60.544 45.455 0.00 0.00 0.00 1.52
104 105 2.798283 GTTTTTCAGGGCCGCTTTTAAC 59.202 45.455 0.00 0.00 0.00 2.01
105 106 1.989706 TTTCAGGGCCGCTTTTAACT 58.010 45.000 0.00 0.00 0.00 2.24
106 107 2.863132 TTCAGGGCCGCTTTTAACTA 57.137 45.000 0.00 0.00 0.00 2.24
107 108 3.359695 TTCAGGGCCGCTTTTAACTAT 57.640 42.857 0.00 0.00 0.00 2.12
108 109 3.359695 TCAGGGCCGCTTTTAACTATT 57.640 42.857 0.00 0.00 0.00 1.73
109 110 3.013921 TCAGGGCCGCTTTTAACTATTG 58.986 45.455 0.00 0.00 0.00 1.90
110 111 3.013921 CAGGGCCGCTTTTAACTATTGA 58.986 45.455 0.00 0.00 0.00 2.57
111 112 3.632145 CAGGGCCGCTTTTAACTATTGAT 59.368 43.478 0.00 0.00 0.00 2.57
112 113 4.819630 CAGGGCCGCTTTTAACTATTGATA 59.180 41.667 0.00 0.00 0.00 2.15
113 114 5.298276 CAGGGCCGCTTTTAACTATTGATAA 59.702 40.000 0.00 0.00 0.00 1.75
114 115 5.531287 AGGGCCGCTTTTAACTATTGATAAG 59.469 40.000 0.00 0.00 0.00 1.73
115 116 5.529800 GGGCCGCTTTTAACTATTGATAAGA 59.470 40.000 0.00 0.00 0.00 2.10
116 117 6.206829 GGGCCGCTTTTAACTATTGATAAGAT 59.793 38.462 0.00 0.00 0.00 2.40
117 118 7.255486 GGGCCGCTTTTAACTATTGATAAGATT 60.255 37.037 0.00 0.00 0.00 2.40
118 119 8.780249 GGCCGCTTTTAACTATTGATAAGATTA 58.220 33.333 0.00 0.00 0.00 1.75
173 174 7.687941 ATATCATTGGAAGTTTCTTTCACGT 57.312 32.000 0.00 0.00 0.00 4.49
174 175 8.786826 ATATCATTGGAAGTTTCTTTCACGTA 57.213 30.769 0.00 0.00 0.00 3.57
175 176 6.295039 TCATTGGAAGTTTCTTTCACGTAC 57.705 37.500 0.00 0.00 0.00 3.67
176 177 4.782252 TTGGAAGTTTCTTTCACGTACG 57.218 40.909 15.01 15.01 0.00 3.67
177 178 4.044336 TGGAAGTTTCTTTCACGTACGA 57.956 40.909 24.41 0.00 0.00 3.43
178 179 4.431809 TGGAAGTTTCTTTCACGTACGAA 58.568 39.130 24.41 3.37 0.00 3.85
179 180 5.051816 TGGAAGTTTCTTTCACGTACGAAT 58.948 37.500 24.41 0.00 0.00 3.34
180 181 5.524646 TGGAAGTTTCTTTCACGTACGAATT 59.475 36.000 24.41 1.57 0.00 2.17
181 182 6.037391 TGGAAGTTTCTTTCACGTACGAATTT 59.963 34.615 24.41 6.67 0.00 1.82
182 183 6.356190 GGAAGTTTCTTTCACGTACGAATTTG 59.644 38.462 24.41 9.92 0.00 2.32
183 184 6.592798 AGTTTCTTTCACGTACGAATTTGA 57.407 33.333 24.41 12.38 0.00 2.69
184 185 7.186021 AGTTTCTTTCACGTACGAATTTGAT 57.814 32.000 24.41 0.00 0.00 2.57
185 186 7.069569 AGTTTCTTTCACGTACGAATTTGATG 58.930 34.615 24.41 7.91 0.00 3.07
186 187 6.772770 TTCTTTCACGTACGAATTTGATGA 57.227 33.333 24.41 10.40 0.00 2.92
187 188 6.961359 TCTTTCACGTACGAATTTGATGAT 57.039 33.333 24.41 0.00 0.00 2.45
188 189 8.468720 TTCTTTCACGTACGAATTTGATGATA 57.531 30.769 24.41 7.44 0.00 2.15
189 190 8.642908 TCTTTCACGTACGAATTTGATGATAT 57.357 30.769 24.41 0.00 0.00 1.63
190 191 8.539674 TCTTTCACGTACGAATTTGATGATATG 58.460 33.333 24.41 4.75 0.00 1.78
191 192 6.210396 TCACGTACGAATTTGATGATATGC 57.790 37.500 24.41 0.00 0.00 3.14
192 193 5.983118 TCACGTACGAATTTGATGATATGCT 59.017 36.000 24.41 0.00 0.00 3.79
193 194 6.478673 TCACGTACGAATTTGATGATATGCTT 59.521 34.615 24.41 0.00 0.00 3.91
194 195 7.011016 TCACGTACGAATTTGATGATATGCTTT 59.989 33.333 24.41 0.00 0.00 3.51
195 196 7.110628 CACGTACGAATTTGATGATATGCTTTG 59.889 37.037 24.41 0.00 0.00 2.77
196 197 7.125755 CGTACGAATTTGATGATATGCTTTGT 58.874 34.615 10.44 0.00 0.00 2.83
197 198 7.110628 CGTACGAATTTGATGATATGCTTTGTG 59.889 37.037 10.44 0.00 0.00 3.33
198 199 6.855836 ACGAATTTGATGATATGCTTTGTGT 58.144 32.000 0.00 0.00 0.00 3.72
199 200 7.984391 ACGAATTTGATGATATGCTTTGTGTA 58.016 30.769 0.00 0.00 0.00 2.90
200 201 8.458052 ACGAATTTGATGATATGCTTTGTGTAA 58.542 29.630 0.00 0.00 0.00 2.41
201 202 8.736742 CGAATTTGATGATATGCTTTGTGTAAC 58.263 33.333 0.00 0.00 37.35 2.50
202 203 9.793252 GAATTTGATGATATGCTTTGTGTAACT 57.207 29.630 0.00 0.00 38.04 2.24
204 205 8.969121 TTTGATGATATGCTTTGTGTAACTTG 57.031 30.769 0.00 0.00 38.04 3.16
205 206 6.554419 TGATGATATGCTTTGTGTAACTTGC 58.446 36.000 0.00 0.00 38.04 4.01
206 207 5.956068 TGATATGCTTTGTGTAACTTGCA 57.044 34.783 0.00 0.00 39.97 4.08
207 208 6.513806 TGATATGCTTTGTGTAACTTGCAT 57.486 33.333 0.00 0.00 44.54 3.96
208 209 6.324042 TGATATGCTTTGTGTAACTTGCATG 58.676 36.000 8.29 0.00 43.24 4.06
209 210 4.589216 ATGCTTTGTGTAACTTGCATGT 57.411 36.364 0.00 0.00 42.42 3.21
210 211 3.963665 TGCTTTGTGTAACTTGCATGTC 58.036 40.909 5.61 0.00 38.04 3.06
211 212 3.379688 TGCTTTGTGTAACTTGCATGTCA 59.620 39.130 5.61 0.00 38.04 3.58
212 213 4.037803 TGCTTTGTGTAACTTGCATGTCAT 59.962 37.500 5.61 0.00 38.04 3.06
213 214 5.240403 TGCTTTGTGTAACTTGCATGTCATA 59.760 36.000 5.61 0.00 38.04 2.15
214 215 6.072008 TGCTTTGTGTAACTTGCATGTCATAT 60.072 34.615 5.61 0.00 38.04 1.78
215 216 7.120432 TGCTTTGTGTAACTTGCATGTCATATA 59.880 33.333 5.61 0.00 38.04 0.86
216 217 8.131100 GCTTTGTGTAACTTGCATGTCATATAT 58.869 33.333 5.61 0.00 38.04 0.86
225 226 8.400184 ACTTGCATGTCATATATTATTGCACT 57.600 30.769 0.00 0.00 0.00 4.40
226 227 9.506018 ACTTGCATGTCATATATTATTGCACTA 57.494 29.630 0.00 0.00 0.00 2.74
229 230 9.282569 TGCATGTCATATATTATTGCACTAACA 57.717 29.630 0.00 0.00 0.00 2.41
230 231 9.546909 GCATGTCATATATTATTGCACTAACAC 57.453 33.333 0.00 0.00 0.00 3.32
241 242 9.762933 ATTATTGCACTAACACTTGTCAAAATT 57.237 25.926 0.00 0.00 0.00 1.82
243 244 8.801715 ATTGCACTAACACTTGTCAAAATTAG 57.198 30.769 0.00 7.90 0.00 1.73
244 245 6.205784 TGCACTAACACTTGTCAAAATTAGC 58.794 36.000 8.85 0.00 0.00 3.09
245 246 5.629435 GCACTAACACTTGTCAAAATTAGCC 59.371 40.000 8.85 1.12 0.00 3.93
246 247 6.515035 GCACTAACACTTGTCAAAATTAGCCT 60.515 38.462 8.85 0.00 0.00 4.58
247 248 7.078228 CACTAACACTTGTCAAAATTAGCCTC 58.922 38.462 8.85 0.00 0.00 4.70
248 249 4.749245 ACACTTGTCAAAATTAGCCTCG 57.251 40.909 0.00 0.00 0.00 4.63
249 250 4.385825 ACACTTGTCAAAATTAGCCTCGA 58.614 39.130 0.00 0.00 0.00 4.04
250 251 4.819630 ACACTTGTCAAAATTAGCCTCGAA 59.180 37.500 0.00 0.00 0.00 3.71
251 252 5.298276 ACACTTGTCAAAATTAGCCTCGAAA 59.702 36.000 0.00 0.00 0.00 3.46
252 253 6.183360 ACACTTGTCAAAATTAGCCTCGAAAA 60.183 34.615 0.00 0.00 0.00 2.29
253 254 6.695278 CACTTGTCAAAATTAGCCTCGAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
254 255 7.382218 CACTTGTCAAAATTAGCCTCGAAAAAT 59.618 33.333 0.00 0.00 0.00 1.82
255 256 7.382218 ACTTGTCAAAATTAGCCTCGAAAAATG 59.618 33.333 0.00 0.00 0.00 2.32
256 257 5.633182 TGTCAAAATTAGCCTCGAAAAATGC 59.367 36.000 0.00 0.00 0.00 3.56
257 258 5.633182 GTCAAAATTAGCCTCGAAAAATGCA 59.367 36.000 0.00 0.00 0.00 3.96
258 259 6.311200 GTCAAAATTAGCCTCGAAAAATGCAT 59.689 34.615 0.00 0.00 0.00 3.96
259 260 6.873076 TCAAAATTAGCCTCGAAAAATGCATT 59.127 30.769 5.99 5.99 0.00 3.56
260 261 8.031864 TCAAAATTAGCCTCGAAAAATGCATTA 58.968 29.630 13.39 0.00 0.00 1.90
261 262 7.992180 AAATTAGCCTCGAAAAATGCATTAG 57.008 32.000 13.39 5.76 0.00 1.73
262 263 5.499139 TTAGCCTCGAAAAATGCATTAGG 57.501 39.130 13.39 15.86 0.00 2.69
263 264 2.099756 AGCCTCGAAAAATGCATTAGGC 59.900 45.455 30.44 30.44 46.67 3.93
264 265 2.799562 GCCTCGAAAAATGCATTAGGCC 60.800 50.000 28.65 16.53 41.73 5.19
265 266 2.223805 CCTCGAAAAATGCATTAGGCCC 60.224 50.000 13.39 0.17 43.89 5.80
266 267 2.689983 CTCGAAAAATGCATTAGGCCCT 59.310 45.455 13.39 0.00 43.89 5.19
267 268 3.882888 CTCGAAAAATGCATTAGGCCCTA 59.117 43.478 13.39 0.00 43.89 3.53
268 269 4.469657 TCGAAAAATGCATTAGGCCCTAT 58.530 39.130 13.39 0.00 43.89 2.57
269 270 5.626142 TCGAAAAATGCATTAGGCCCTATA 58.374 37.500 13.39 0.00 43.89 1.31
270 271 6.245408 TCGAAAAATGCATTAGGCCCTATAT 58.755 36.000 13.39 0.00 43.89 0.86
271 272 7.398829 TCGAAAAATGCATTAGGCCCTATATA 58.601 34.615 13.39 0.00 43.89 0.86
272 273 7.552687 TCGAAAAATGCATTAGGCCCTATATAG 59.447 37.037 13.39 2.46 43.89 1.31
273 274 7.552687 CGAAAAATGCATTAGGCCCTATATAGA 59.447 37.037 13.39 0.00 43.89 1.98
274 275 9.413734 GAAAAATGCATTAGGCCCTATATAGAT 57.586 33.333 13.39 0.00 43.89 1.98
275 276 8.757982 AAAATGCATTAGGCCCTATATAGATG 57.242 34.615 13.39 6.87 43.89 2.90
276 277 5.894298 TGCATTAGGCCCTATATAGATGG 57.106 43.478 11.53 6.04 43.89 3.51
277 278 5.537914 TGCATTAGGCCCTATATAGATGGA 58.462 41.667 11.53 4.41 43.89 3.41
278 279 5.970021 TGCATTAGGCCCTATATAGATGGAA 59.030 40.000 11.53 0.00 43.89 3.53
279 280 6.100279 TGCATTAGGCCCTATATAGATGGAAG 59.900 42.308 11.53 0.00 43.89 3.46
280 281 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
281 282 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
282 283 5.305675 AGGCCCTATATAGATGGAAGGAA 57.694 43.478 11.53 0.00 0.00 3.36
283 284 5.284582 AGGCCCTATATAGATGGAAGGAAG 58.715 45.833 11.53 0.00 0.00 3.46
284 285 4.410555 GGCCCTATATAGATGGAAGGAAGG 59.589 50.000 11.53 1.18 0.00 3.46
285 286 5.281314 GCCCTATATAGATGGAAGGAAGGA 58.719 45.833 11.53 0.00 0.00 3.36
286 287 5.365314 GCCCTATATAGATGGAAGGAAGGAG 59.635 48.000 11.53 0.00 0.00 3.69
287 288 6.507568 CCCTATATAGATGGAAGGAAGGAGT 58.492 44.000 11.53 0.00 0.00 3.85
288 289 7.653503 CCCTATATAGATGGAAGGAAGGAGTA 58.346 42.308 11.53 0.00 0.00 2.59
289 290 7.562088 CCCTATATAGATGGAAGGAAGGAGTAC 59.438 44.444 11.53 0.00 0.00 2.73
290 291 8.116669 CCTATATAGATGGAAGGAAGGAGTACA 58.883 40.741 11.53 0.00 0.00 2.90
291 292 9.535170 CTATATAGATGGAAGGAAGGAGTACAA 57.465 37.037 3.44 0.00 0.00 2.41
292 293 8.798975 ATATAGATGGAAGGAAGGAGTACAAA 57.201 34.615 0.00 0.00 0.00 2.83
293 294 7.698163 ATAGATGGAAGGAAGGAGTACAAAT 57.302 36.000 0.00 0.00 0.00 2.32
294 295 6.394345 AGATGGAAGGAAGGAGTACAAATT 57.606 37.500 0.00 0.00 0.00 1.82
295 296 7.510675 AGATGGAAGGAAGGAGTACAAATTA 57.489 36.000 0.00 0.00 0.00 1.40
296 297 8.107196 AGATGGAAGGAAGGAGTACAAATTAT 57.893 34.615 0.00 0.00 0.00 1.28
297 298 8.214364 AGATGGAAGGAAGGAGTACAAATTATC 58.786 37.037 0.00 0.00 0.00 1.75
298 299 7.265599 TGGAAGGAAGGAGTACAAATTATCA 57.734 36.000 0.00 0.00 0.00 2.15
399 400 3.556423 GGCCTTAGTTACCGGTGATATGG 60.556 52.174 19.93 17.75 0.00 2.74
408 409 1.197055 CGGTGATATGGACGAACACG 58.803 55.000 0.00 0.00 33.08 4.49
469 470 2.836981 TGCAATTCCCATTTTACCCCTG 59.163 45.455 0.00 0.00 0.00 4.45
483 484 0.394565 CCCCTGGACAGAATCGATCC 59.605 60.000 0.00 0.00 0.00 3.36
484 485 0.032678 CCCTGGACAGAATCGATCCG 59.967 60.000 0.00 0.00 35.06 4.18
538 588 4.280494 CTCCCGTGCGATACCCCG 62.280 72.222 0.00 0.00 0.00 5.73
712 800 0.035915 GGTGAGCAGGTTCTTCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
715 803 1.151810 AGCAGGTTCTTCTCCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
716 804 1.204113 AGCAGGTTCTTCTCCCCCAG 61.204 60.000 0.00 0.00 0.00 4.45
723 811 2.701423 GTTCTTCTCCCCCAGTCTATCC 59.299 54.545 0.00 0.00 0.00 2.59
824 912 1.915965 GCGCGCGATCTAATCCAAAAC 60.916 52.381 37.18 6.21 0.00 2.43
825 913 1.332904 CGCGCGATCTAATCCAAAACC 60.333 52.381 28.94 0.00 0.00 3.27
871 968 4.748277 TGCTAGGCGGTAGATTAGTTTT 57.252 40.909 0.00 0.00 0.00 2.43
872 969 5.093849 TGCTAGGCGGTAGATTAGTTTTT 57.906 39.130 0.00 0.00 0.00 1.94
900 997 1.002087 ACTCCACGGGACAACTGAATC 59.998 52.381 0.00 0.00 0.00 2.52
911 1008 2.069273 CAACTGAATCAGTCCGTCACC 58.931 52.381 17.02 0.00 44.62 4.02
912 1009 1.633774 ACTGAATCAGTCCGTCACCT 58.366 50.000 10.56 0.00 41.21 4.00
914 1011 1.546029 CTGAATCAGTCCGTCACCTGA 59.454 52.381 1.31 0.00 41.61 3.86
915 1012 1.546029 TGAATCAGTCCGTCACCTGAG 59.454 52.381 0.00 0.00 40.77 3.35
916 1013 0.247736 AATCAGTCCGTCACCTGAGC 59.752 55.000 0.00 0.00 40.77 4.26
1122 1223 0.100861 GGATCGAGTCCGTTGTCTCC 59.899 60.000 0.00 0.00 37.23 3.71
1145 1246 1.066573 AGAGTTCCGTGAGAATGCCAG 60.067 52.381 0.00 0.00 36.69 4.85
1152 1253 1.731720 GTGAGAATGCCAGGAGTGTC 58.268 55.000 0.00 0.00 0.00 3.67
1191 1292 9.500785 TTTGTGTACATTGAGTATTTGATGAGA 57.499 29.630 0.00 0.00 34.67 3.27
1321 1422 9.083422 TCTCTCCCACTAATACTGATATCAAAG 57.917 37.037 6.90 0.00 0.00 2.77
1341 1442 7.660112 TCAAAGTACAACGAGTAAGGATGTTA 58.340 34.615 0.00 0.00 33.72 2.41
1437 1538 7.657761 AGTTGTTTACTCCATAGAAGTGTTCTG 59.342 37.037 0.00 0.00 34.45 3.02
1461 1562 5.106673 GGTCAAGTGAATAGTTACACCTTGC 60.107 44.000 0.00 0.00 37.69 4.01
1614 1717 6.560711 ACCACATGTTTCTCTTTGTTTGTAC 58.439 36.000 0.00 0.00 0.00 2.90
1615 1718 6.377146 ACCACATGTTTCTCTTTGTTTGTACT 59.623 34.615 0.00 0.00 0.00 2.73
1616 1719 6.912591 CCACATGTTTCTCTTTGTTTGTACTC 59.087 38.462 0.00 0.00 0.00 2.59
1617 1720 6.912591 CACATGTTTCTCTTTGTTTGTACTCC 59.087 38.462 0.00 0.00 0.00 3.85
1618 1721 6.039382 ACATGTTTCTCTTTGTTTGTACTCCC 59.961 38.462 0.00 0.00 0.00 4.30
1619 1722 5.751586 TGTTTCTCTTTGTTTGTACTCCCT 58.248 37.500 0.00 0.00 0.00 4.20
1620 1723 5.820947 TGTTTCTCTTTGTTTGTACTCCCTC 59.179 40.000 0.00 0.00 0.00 4.30
1621 1724 4.618920 TCTCTTTGTTTGTACTCCCTCC 57.381 45.455 0.00 0.00 0.00 4.30
1622 1725 3.006537 TCTCTTTGTTTGTACTCCCTCCG 59.993 47.826 0.00 0.00 0.00 4.63
1623 1726 2.701951 TCTTTGTTTGTACTCCCTCCGT 59.298 45.455 0.00 0.00 0.00 4.69
1624 1727 3.896888 TCTTTGTTTGTACTCCCTCCGTA 59.103 43.478 0.00 0.00 0.00 4.02
1625 1728 4.344679 TCTTTGTTTGTACTCCCTCCGTAA 59.655 41.667 0.00 0.00 0.00 3.18
1626 1729 4.686191 TTGTTTGTACTCCCTCCGTAAA 57.314 40.909 0.00 0.00 0.00 2.01
1627 1730 3.993920 TGTTTGTACTCCCTCCGTAAAC 58.006 45.455 0.00 0.00 0.00 2.01
1628 1731 3.642848 TGTTTGTACTCCCTCCGTAAACT 59.357 43.478 0.00 0.00 0.00 2.66
1629 1732 4.832266 TGTTTGTACTCCCTCCGTAAACTA 59.168 41.667 0.00 0.00 0.00 2.24
1630 1733 5.304101 TGTTTGTACTCCCTCCGTAAACTAA 59.696 40.000 0.00 0.00 0.00 2.24
1631 1734 6.014327 TGTTTGTACTCCCTCCGTAAACTAAT 60.014 38.462 0.00 0.00 0.00 1.73
1632 1735 7.178274 TGTTTGTACTCCCTCCGTAAACTAATA 59.822 37.037 0.00 0.00 0.00 0.98
1633 1736 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
1634 1737 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
1635 1738 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
1636 1739 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
1637 1740 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1638 1741 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1639 1742 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1640 1743 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1641 1744 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1642 1745 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1643 1746 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1688 1791 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1689 1792 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1690 1793 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1691 1794 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1692 1795 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1693 1796 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1694 1797 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
1695 1798 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1696 1799 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1730 1833 0.659957 GCAAGATCGAACCATCTGCC 59.340 55.000 0.00 0.00 33.13 4.85
1764 1867 9.149225 GCTAACATCTCAAGTATCATAATCTGG 57.851 37.037 0.00 0.00 0.00 3.86
1825 1934 7.903145 TGTTGCTCTTATACAAACTTCTCCTA 58.097 34.615 0.00 0.00 0.00 2.94
1839 1948 7.747155 AACTTCTCCTAAAAGGCTAAAACTC 57.253 36.000 0.00 0.00 34.61 3.01
1840 1949 5.932883 ACTTCTCCTAAAAGGCTAAAACTCG 59.067 40.000 0.00 0.00 34.61 4.18
1856 1968 7.439655 GCTAAAACTCGAGATAATCCTCACATT 59.560 37.037 21.68 0.00 32.86 2.71
1859 1971 6.083098 ACTCGAGATAATCCTCACATTCTG 57.917 41.667 21.68 0.00 32.86 3.02
1942 2054 3.042682 TGGTGTTTCTACTGGGAGACAA 58.957 45.455 0.00 0.00 33.27 3.18
1976 2088 3.230134 AGCTTGCTTTTAATGGTGTCCA 58.770 40.909 0.00 0.00 38.19 4.02
1996 2109 3.801594 CCAACATAAAAATGGCCGCATAC 59.198 43.478 0.00 0.00 0.00 2.39
2041 2154 3.328931 TCTCTGGAGCACCTTCATTTTCT 59.671 43.478 0.71 0.00 37.04 2.52
2042 2155 3.415212 TCTGGAGCACCTTCATTTTCTG 58.585 45.455 0.71 0.00 37.04 3.02
2063 2176 8.862325 TTCTGATAGGAATCTCTAGATGAGTC 57.138 38.462 9.68 9.68 43.13 3.36
2152 2265 6.846350 CAAGATCAATTGGACCAGAGTTTAC 58.154 40.000 5.42 0.00 0.00 2.01
2206 2319 5.850614 ACTGTCTAAACGACTAAACCATGT 58.149 37.500 0.00 0.00 43.25 3.21
2366 2480 8.143193 TGAAAACTGAATTGTATTGCTCAATGT 58.857 29.630 5.43 0.00 35.95 2.71
2370 2484 9.577110 AACTGAATTGTATTGCTCAATGTTATG 57.423 29.630 5.43 0.00 35.95 1.90
2371 2485 8.742777 ACTGAATTGTATTGCTCAATGTTATGT 58.257 29.630 5.43 0.00 35.95 2.29
2383 2561 6.037500 GCTCAATGTTATGTCTTAGTGCATGA 59.962 38.462 0.00 0.00 0.00 3.07
2391 2569 8.454106 GTTATGTCTTAGTGCATGATTTCACTT 58.546 33.333 8.69 0.00 42.81 3.16
2392 2570 6.882610 TGTCTTAGTGCATGATTTCACTTT 57.117 33.333 8.69 0.00 42.81 2.66
2402 2580 5.340667 GCATGATTTCACTTTCGTTGTTCTC 59.659 40.000 0.00 0.00 0.00 2.87
2418 2596 2.543777 TCTCCACCAGCAGTGTAAAC 57.456 50.000 6.20 0.00 45.74 2.01
2419 2597 2.047061 TCTCCACCAGCAGTGTAAACT 58.953 47.619 6.20 0.00 45.74 2.66
2533 2711 0.743097 GGGCCAGATCAAGCAATGTC 59.257 55.000 4.39 0.00 0.00 3.06
2567 2746 4.744795 AGATGGTTCTAACTGCTAGTGG 57.255 45.455 0.00 0.00 0.00 4.00
2573 2752 3.955650 TCTAACTGCTAGTGGTGGAAC 57.044 47.619 0.00 0.00 0.00 3.62
2589 2768 2.290260 TGGAACCATCATCACCACAGTC 60.290 50.000 0.00 0.00 0.00 3.51
2590 2769 2.290260 GGAACCATCATCACCACAGTCA 60.290 50.000 0.00 0.00 0.00 3.41
2845 3024 4.503714 TTTGAGGGAGTCACTTCTTTGT 57.496 40.909 0.00 0.00 33.71 2.83
2846 3025 5.623956 TTTGAGGGAGTCACTTCTTTGTA 57.376 39.130 0.00 0.00 33.71 2.41
2847 3026 5.825593 TTGAGGGAGTCACTTCTTTGTAT 57.174 39.130 0.00 0.00 33.71 2.29
2848 3027 5.825593 TGAGGGAGTCACTTCTTTGTATT 57.174 39.130 0.00 0.00 0.00 1.89
2849 3028 6.187727 TGAGGGAGTCACTTCTTTGTATTT 57.812 37.500 0.00 0.00 0.00 1.40
2850 3029 6.601332 TGAGGGAGTCACTTCTTTGTATTTT 58.399 36.000 0.00 0.00 0.00 1.82
2851 3030 6.486657 TGAGGGAGTCACTTCTTTGTATTTTG 59.513 38.462 0.00 0.00 0.00 2.44
2852 3031 5.770162 AGGGAGTCACTTCTTTGTATTTTGG 59.230 40.000 0.00 0.00 0.00 3.28
2853 3032 5.048013 GGGAGTCACTTCTTTGTATTTTGGG 60.048 44.000 0.00 0.00 0.00 4.12
2854 3033 5.453567 AGTCACTTCTTTGTATTTTGGGC 57.546 39.130 0.00 0.00 0.00 5.36
2855 3034 4.023193 AGTCACTTCTTTGTATTTTGGGCG 60.023 41.667 0.00 0.00 0.00 6.13
2856 3035 3.886505 TCACTTCTTTGTATTTTGGGCGT 59.113 39.130 0.00 0.00 0.00 5.68
2857 3036 3.980775 CACTTCTTTGTATTTTGGGCGTG 59.019 43.478 0.00 0.00 0.00 5.34
2858 3037 3.886505 ACTTCTTTGTATTTTGGGCGTGA 59.113 39.130 0.00 0.00 0.00 4.35
2859 3038 4.339814 ACTTCTTTGTATTTTGGGCGTGAA 59.660 37.500 0.00 0.00 0.00 3.18
2860 3039 4.231718 TCTTTGTATTTTGGGCGTGAAC 57.768 40.909 0.00 0.00 0.00 3.18
2861 3040 3.632604 TCTTTGTATTTTGGGCGTGAACA 59.367 39.130 0.00 0.00 0.00 3.18
2862 3041 3.634568 TTGTATTTTGGGCGTGAACAG 57.365 42.857 0.00 0.00 0.00 3.16
2863 3042 2.577700 TGTATTTTGGGCGTGAACAGT 58.422 42.857 0.00 0.00 0.00 3.55
2864 3043 3.741249 TGTATTTTGGGCGTGAACAGTA 58.259 40.909 0.00 0.00 0.00 2.74
2865 3044 4.328536 TGTATTTTGGGCGTGAACAGTAT 58.671 39.130 0.00 0.00 0.00 2.12
2866 3045 4.762765 TGTATTTTGGGCGTGAACAGTATT 59.237 37.500 0.00 0.00 0.00 1.89
2867 3046 4.864704 ATTTTGGGCGTGAACAGTATTT 57.135 36.364 0.00 0.00 0.00 1.40
2868 3047 4.657436 TTTTGGGCGTGAACAGTATTTT 57.343 36.364 0.00 0.00 0.00 1.82
2869 3048 4.657436 TTTGGGCGTGAACAGTATTTTT 57.343 36.364 0.00 0.00 0.00 1.94
2894 3073 7.876896 TTTTGTTATGTTTTCTTAATCGGGC 57.123 32.000 0.00 0.00 0.00 6.13
2895 3074 5.570234 TGTTATGTTTTCTTAATCGGGCC 57.430 39.130 0.00 0.00 0.00 5.80
2896 3075 4.399934 TGTTATGTTTTCTTAATCGGGCCC 59.600 41.667 13.57 13.57 0.00 5.80
2897 3076 1.842052 TGTTTTCTTAATCGGGCCCC 58.158 50.000 18.66 0.00 0.00 5.80
2898 3077 1.356398 TGTTTTCTTAATCGGGCCCCT 59.644 47.619 18.66 3.09 0.00 4.79
2899 3078 2.022195 GTTTTCTTAATCGGGCCCCTC 58.978 52.381 18.66 0.00 0.00 4.30
2900 3079 0.549469 TTTCTTAATCGGGCCCCTCC 59.451 55.000 18.66 0.00 0.00 4.30
2909 3088 3.679755 GGCCCCTCCCAAGATCAT 58.320 61.111 0.00 0.00 0.00 2.45
2910 3089 2.868504 GGCCCCTCCCAAGATCATA 58.131 57.895 0.00 0.00 0.00 2.15
2911 3090 1.149101 GGCCCCTCCCAAGATCATAA 58.851 55.000 0.00 0.00 0.00 1.90
2912 3091 1.499007 GGCCCCTCCCAAGATCATAAA 59.501 52.381 0.00 0.00 0.00 1.40
2913 3092 2.110721 GGCCCCTCCCAAGATCATAAAT 59.889 50.000 0.00 0.00 0.00 1.40
2914 3093 3.438520 GGCCCCTCCCAAGATCATAAATT 60.439 47.826 0.00 0.00 0.00 1.82
2915 3094 4.226384 GCCCCTCCCAAGATCATAAATTT 58.774 43.478 0.00 0.00 0.00 1.82
2916 3095 5.393866 GCCCCTCCCAAGATCATAAATTTA 58.606 41.667 0.00 0.00 0.00 1.40
2917 3096 5.243954 GCCCCTCCCAAGATCATAAATTTAC 59.756 44.000 0.00 0.00 0.00 2.01
2918 3097 5.473504 CCCCTCCCAAGATCATAAATTTACG 59.526 44.000 0.00 0.00 0.00 3.18
2919 3098 6.296026 CCCTCCCAAGATCATAAATTTACGA 58.704 40.000 0.00 0.00 0.00 3.43
2920 3099 6.942576 CCCTCCCAAGATCATAAATTTACGAT 59.057 38.462 6.48 6.48 0.00 3.73
2921 3100 7.448469 CCCTCCCAAGATCATAAATTTACGATT 59.552 37.037 8.09 0.00 0.00 3.34
2922 3101 8.507249 CCTCCCAAGATCATAAATTTACGATTC 58.493 37.037 8.09 2.91 0.00 2.52
2923 3102 8.391075 TCCCAAGATCATAAATTTACGATTCC 57.609 34.615 8.09 0.00 0.00 3.01
2924 3103 8.217799 TCCCAAGATCATAAATTTACGATTCCT 58.782 33.333 8.09 0.00 0.00 3.36
2925 3104 8.292448 CCCAAGATCATAAATTTACGATTCCTG 58.708 37.037 8.09 6.32 0.00 3.86
2926 3105 7.805071 CCAAGATCATAAATTTACGATTCCTGC 59.195 37.037 8.09 0.00 0.00 4.85
2927 3106 7.440523 AGATCATAAATTTACGATTCCTGCC 57.559 36.000 8.09 0.00 0.00 4.85
2928 3107 7.227156 AGATCATAAATTTACGATTCCTGCCT 58.773 34.615 8.09 0.00 0.00 4.75
2929 3108 6.861065 TCATAAATTTACGATTCCTGCCTC 57.139 37.500 0.00 0.00 0.00 4.70
2930 3109 5.763204 TCATAAATTTACGATTCCTGCCTCC 59.237 40.000 0.00 0.00 0.00 4.30
2931 3110 2.240493 ATTTACGATTCCTGCCTCCG 57.760 50.000 0.00 0.00 0.00 4.63
2932 3111 0.461339 TTTACGATTCCTGCCTCCGC 60.461 55.000 0.00 0.00 0.00 5.54
2933 3112 2.306255 TTACGATTCCTGCCTCCGCC 62.306 60.000 0.00 0.00 0.00 6.13
2934 3113 4.161295 CGATTCCTGCCTCCGCCA 62.161 66.667 0.00 0.00 0.00 5.69
2935 3114 2.514824 GATTCCTGCCTCCGCCAC 60.515 66.667 0.00 0.00 0.00 5.01
2936 3115 3.011517 ATTCCTGCCTCCGCCACT 61.012 61.111 0.00 0.00 0.00 4.00
2937 3116 3.335356 ATTCCTGCCTCCGCCACTG 62.335 63.158 0.00 0.00 0.00 3.66
2939 3118 4.767255 CCTGCCTCCGCCACTGAC 62.767 72.222 0.00 0.00 0.00 3.51
2940 3119 4.767255 CTGCCTCCGCCACTGACC 62.767 72.222 0.00 0.00 0.00 4.02
2943 3122 3.625897 CCTCCGCCACTGACCACA 61.626 66.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.272212 TCTTTTGCAAAAGGGATCGGC 59.728 47.619 38.33 0.00 44.22 5.54
1 2 3.658757 TTCTTTTGCAAAAGGGATCGG 57.341 42.857 38.33 20.87 44.22 4.18
2 3 5.982465 TTTTTCTTTTGCAAAAGGGATCG 57.018 34.783 38.33 21.47 44.22 3.69
12 13 4.433615 TGCACGGTTATTTTTCTTTTGCA 58.566 34.783 0.00 0.00 35.19 4.08
42 43 3.870559 TGGAAGAAGGGAGTAGGTTCTT 58.129 45.455 0.00 0.00 42.02 2.52
43 44 3.562108 TGGAAGAAGGGAGTAGGTTCT 57.438 47.619 0.00 0.00 31.71 3.01
44 45 4.034410 AGATGGAAGAAGGGAGTAGGTTC 58.966 47.826 0.00 0.00 0.00 3.62
45 46 4.081695 AGATGGAAGAAGGGAGTAGGTT 57.918 45.455 0.00 0.00 0.00 3.50
46 47 3.786213 AGATGGAAGAAGGGAGTAGGT 57.214 47.619 0.00 0.00 0.00 3.08
47 48 7.782644 CCTATATAGATGGAAGAAGGGAGTAGG 59.217 44.444 11.53 0.00 0.00 3.18
48 49 7.782644 CCCTATATAGATGGAAGAAGGGAGTAG 59.217 44.444 11.53 0.00 44.39 2.57
49 50 7.244239 ACCCTATATAGATGGAAGAAGGGAGTA 59.756 40.741 11.53 0.00 44.39 2.59
50 51 6.048563 ACCCTATATAGATGGAAGAAGGGAGT 59.951 42.308 11.53 0.00 44.39 3.85
51 52 6.507568 ACCCTATATAGATGGAAGAAGGGAG 58.492 44.000 11.53 0.00 44.39 4.30
52 53 6.280649 AGACCCTATATAGATGGAAGAAGGGA 59.719 42.308 11.53 0.00 44.39 4.20
53 54 6.507568 AGACCCTATATAGATGGAAGAAGGG 58.492 44.000 11.53 4.91 46.55 3.95
54 55 9.722317 ATTAGACCCTATATAGATGGAAGAAGG 57.278 37.037 11.53 3.20 0.00 3.46
57 58 9.848710 CGTATTAGACCCTATATAGATGGAAGA 57.151 37.037 11.53 0.00 0.00 2.87
58 59 9.629878 ACGTATTAGACCCTATATAGATGGAAG 57.370 37.037 11.53 0.00 0.00 3.46
59 60 9.986157 AACGTATTAGACCCTATATAGATGGAA 57.014 33.333 11.53 0.00 0.00 3.53
60 61 9.986157 AAACGTATTAGACCCTATATAGATGGA 57.014 33.333 11.53 0.00 0.00 3.41
67 68 8.373220 CCCTGAAAAACGTATTAGACCCTATAT 58.627 37.037 0.00 0.00 0.00 0.86
68 69 7.687592 GCCCTGAAAAACGTATTAGACCCTATA 60.688 40.741 0.00 0.00 0.00 1.31
69 70 6.589135 CCCTGAAAAACGTATTAGACCCTAT 58.411 40.000 0.00 0.00 0.00 2.57
70 71 5.627503 GCCCTGAAAAACGTATTAGACCCTA 60.628 44.000 0.00 0.00 0.00 3.53
71 72 4.840271 CCCTGAAAAACGTATTAGACCCT 58.160 43.478 0.00 0.00 0.00 4.34
72 73 3.376234 GCCCTGAAAAACGTATTAGACCC 59.624 47.826 0.00 0.00 0.00 4.46
73 74 3.376234 GGCCCTGAAAAACGTATTAGACC 59.624 47.826 0.00 0.00 0.00 3.85
74 75 3.063045 CGGCCCTGAAAAACGTATTAGAC 59.937 47.826 0.00 0.00 0.00 2.59
75 76 3.264104 CGGCCCTGAAAAACGTATTAGA 58.736 45.455 0.00 0.00 0.00 2.10
76 77 2.223180 GCGGCCCTGAAAAACGTATTAG 60.223 50.000 0.00 0.00 0.00 1.73
77 78 1.738908 GCGGCCCTGAAAAACGTATTA 59.261 47.619 0.00 0.00 0.00 0.98
78 79 0.524414 GCGGCCCTGAAAAACGTATT 59.476 50.000 0.00 0.00 0.00 1.89
79 80 0.322187 AGCGGCCCTGAAAAACGTAT 60.322 50.000 0.00 0.00 0.00 3.06
80 81 0.535553 AAGCGGCCCTGAAAAACGTA 60.536 50.000 0.00 0.00 0.00 3.57
81 82 1.388837 AAAGCGGCCCTGAAAAACGT 61.389 50.000 0.00 0.00 0.00 3.99
82 83 0.249280 AAAAGCGGCCCTGAAAAACG 60.249 50.000 0.00 0.00 0.00 3.60
83 84 2.798283 GTTAAAAGCGGCCCTGAAAAAC 59.202 45.455 0.00 0.00 0.00 2.43
84 85 2.696187 AGTTAAAAGCGGCCCTGAAAAA 59.304 40.909 0.00 0.00 0.00 1.94
85 86 2.312390 AGTTAAAAGCGGCCCTGAAAA 58.688 42.857 0.00 0.00 0.00 2.29
86 87 1.989706 AGTTAAAAGCGGCCCTGAAA 58.010 45.000 0.00 0.00 0.00 2.69
87 88 2.863132 TAGTTAAAAGCGGCCCTGAA 57.137 45.000 0.00 0.00 0.00 3.02
88 89 3.013921 CAATAGTTAAAAGCGGCCCTGA 58.986 45.455 0.00 0.00 0.00 3.86
89 90 3.013921 TCAATAGTTAAAAGCGGCCCTG 58.986 45.455 0.00 0.00 0.00 4.45
90 91 3.359695 TCAATAGTTAAAAGCGGCCCT 57.640 42.857 0.00 0.00 0.00 5.19
91 92 5.529800 TCTTATCAATAGTTAAAAGCGGCCC 59.470 40.000 0.00 0.00 0.00 5.80
92 93 6.613755 TCTTATCAATAGTTAAAAGCGGCC 57.386 37.500 0.00 0.00 0.00 6.13
147 148 9.226606 ACGTGAAAGAAACTTCCAATGATATAA 57.773 29.630 0.00 0.00 0.00 0.98
148 149 8.786826 ACGTGAAAGAAACTTCCAATGATATA 57.213 30.769 0.00 0.00 0.00 0.86
149 150 7.687941 ACGTGAAAGAAACTTCCAATGATAT 57.312 32.000 0.00 0.00 0.00 1.63
150 151 7.148705 CGTACGTGAAAGAAACTTCCAATGATA 60.149 37.037 7.22 0.00 0.00 2.15
151 152 6.347402 CGTACGTGAAAGAAACTTCCAATGAT 60.347 38.462 7.22 0.00 0.00 2.45
152 153 5.050634 CGTACGTGAAAGAAACTTCCAATGA 60.051 40.000 7.22 0.00 0.00 2.57
153 154 5.050634 TCGTACGTGAAAGAAACTTCCAATG 60.051 40.000 16.05 0.00 0.00 2.82
154 155 5.051816 TCGTACGTGAAAGAAACTTCCAAT 58.948 37.500 16.05 0.00 0.00 3.16
155 156 4.431809 TCGTACGTGAAAGAAACTTCCAA 58.568 39.130 16.05 0.00 0.00 3.53
156 157 4.044336 TCGTACGTGAAAGAAACTTCCA 57.956 40.909 16.05 0.00 0.00 3.53
157 158 5.587033 ATTCGTACGTGAAAGAAACTTCC 57.413 39.130 16.05 0.00 0.00 3.46
158 159 7.121272 TCAAATTCGTACGTGAAAGAAACTTC 58.879 34.615 16.05 0.00 0.00 3.01
159 160 7.007313 TCAAATTCGTACGTGAAAGAAACTT 57.993 32.000 16.05 0.00 0.00 2.66
160 161 6.592798 TCAAATTCGTACGTGAAAGAAACT 57.407 33.333 16.05 0.00 0.00 2.66
161 162 7.067116 TCATCAAATTCGTACGTGAAAGAAAC 58.933 34.615 16.05 0.00 0.00 2.78
162 163 7.179927 TCATCAAATTCGTACGTGAAAGAAA 57.820 32.000 16.05 0.00 0.00 2.52
163 164 6.772770 TCATCAAATTCGTACGTGAAAGAA 57.227 33.333 16.05 0.78 0.00 2.52
164 165 6.961359 ATCATCAAATTCGTACGTGAAAGA 57.039 33.333 16.05 13.24 0.00 2.52
165 166 7.318909 GCATATCATCAAATTCGTACGTGAAAG 59.681 37.037 16.05 8.72 0.00 2.62
166 167 7.011016 AGCATATCATCAAATTCGTACGTGAAA 59.989 33.333 16.05 2.41 0.00 2.69
167 168 6.478673 AGCATATCATCAAATTCGTACGTGAA 59.521 34.615 16.05 3.23 0.00 3.18
168 169 5.983118 AGCATATCATCAAATTCGTACGTGA 59.017 36.000 16.05 11.86 0.00 4.35
169 170 6.215477 AGCATATCATCAAATTCGTACGTG 57.785 37.500 16.05 6.20 0.00 4.49
170 171 6.844696 AAGCATATCATCAAATTCGTACGT 57.155 33.333 16.05 0.00 0.00 3.57
171 172 7.110628 CACAAAGCATATCATCAAATTCGTACG 59.889 37.037 9.53 9.53 0.00 3.67
172 173 7.910162 ACACAAAGCATATCATCAAATTCGTAC 59.090 33.333 0.00 0.00 0.00 3.67
173 174 7.984391 ACACAAAGCATATCATCAAATTCGTA 58.016 30.769 0.00 0.00 0.00 3.43
174 175 6.855836 ACACAAAGCATATCATCAAATTCGT 58.144 32.000 0.00 0.00 0.00 3.85
175 176 8.736742 GTTACACAAAGCATATCATCAAATTCG 58.263 33.333 0.00 0.00 0.00 3.34
176 177 9.793252 AGTTACACAAAGCATATCATCAAATTC 57.207 29.630 0.00 0.00 0.00 2.17
178 179 9.577110 CAAGTTACACAAAGCATATCATCAAAT 57.423 29.630 0.00 0.00 0.00 2.32
179 180 7.541783 GCAAGTTACACAAAGCATATCATCAAA 59.458 33.333 0.00 0.00 0.00 2.69
180 181 7.028962 GCAAGTTACACAAAGCATATCATCAA 58.971 34.615 0.00 0.00 0.00 2.57
181 182 6.150809 TGCAAGTTACACAAAGCATATCATCA 59.849 34.615 0.00 0.00 0.00 3.07
182 183 6.554419 TGCAAGTTACACAAAGCATATCATC 58.446 36.000 0.00 0.00 0.00 2.92
183 184 6.513806 TGCAAGTTACACAAAGCATATCAT 57.486 33.333 0.00 0.00 0.00 2.45
184 185 5.956068 TGCAAGTTACACAAAGCATATCA 57.044 34.783 0.00 0.00 0.00 2.15
185 186 6.324819 ACATGCAAGTTACACAAAGCATATC 58.675 36.000 0.00 0.00 40.38 1.63
186 187 6.072008 TGACATGCAAGTTACACAAAGCATAT 60.072 34.615 0.00 0.00 40.38 1.78
187 188 5.240403 TGACATGCAAGTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
188 189 4.037803 TGACATGCAAGTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
189 190 3.379688 TGACATGCAAGTTACACAAAGCA 59.620 39.130 0.00 0.00 36.34 3.91
190 191 3.963665 TGACATGCAAGTTACACAAAGC 58.036 40.909 0.00 0.00 0.00 3.51
199 200 8.853126 AGTGCAATAATATATGACATGCAAGTT 58.147 29.630 12.03 2.31 43.10 2.66
200 201 8.400184 AGTGCAATAATATATGACATGCAAGT 57.600 30.769 12.03 0.00 43.10 3.16
203 204 9.282569 TGTTAGTGCAATAATATATGACATGCA 57.717 29.630 10.15 7.88 39.73 3.96
204 205 9.546909 GTGTTAGTGCAATAATATATGACATGC 57.453 33.333 10.15 3.62 0.00 4.06
215 216 9.762933 AATTTTGACAAGTGTTAGTGCAATAAT 57.237 25.926 10.15 0.00 0.00 1.28
217 218 9.891828 CTAATTTTGACAAGTGTTAGTGCAATA 57.108 29.630 0.00 0.00 0.00 1.90
218 219 7.382218 GCTAATTTTGACAAGTGTTAGTGCAAT 59.618 33.333 13.32 0.00 0.00 3.56
219 220 6.695278 GCTAATTTTGACAAGTGTTAGTGCAA 59.305 34.615 13.32 0.00 0.00 4.08
220 221 6.205784 GCTAATTTTGACAAGTGTTAGTGCA 58.794 36.000 13.32 0.00 0.00 4.57
221 222 5.629435 GGCTAATTTTGACAAGTGTTAGTGC 59.371 40.000 13.32 0.00 0.00 4.40
222 223 6.970484 AGGCTAATTTTGACAAGTGTTAGTG 58.030 36.000 13.32 0.00 0.00 2.74
223 224 6.073222 CGAGGCTAATTTTGACAAGTGTTAGT 60.073 38.462 13.32 0.00 0.00 2.24
224 225 6.147164 TCGAGGCTAATTTTGACAAGTGTTAG 59.853 38.462 0.00 9.92 0.00 2.34
225 226 5.992829 TCGAGGCTAATTTTGACAAGTGTTA 59.007 36.000 0.00 0.00 0.00 2.41
226 227 4.819630 TCGAGGCTAATTTTGACAAGTGTT 59.180 37.500 0.00 0.00 0.00 3.32
227 228 4.385825 TCGAGGCTAATTTTGACAAGTGT 58.614 39.130 0.00 0.00 0.00 3.55
228 229 5.356882 TTCGAGGCTAATTTTGACAAGTG 57.643 39.130 0.00 0.00 0.00 3.16
229 230 6.385649 TTTTCGAGGCTAATTTTGACAAGT 57.614 33.333 0.00 0.00 0.00 3.16
230 231 7.619982 GCATTTTTCGAGGCTAATTTTGACAAG 60.620 37.037 0.00 0.00 0.00 3.16
231 232 6.145371 GCATTTTTCGAGGCTAATTTTGACAA 59.855 34.615 0.00 0.00 0.00 3.18
232 233 5.633182 GCATTTTTCGAGGCTAATTTTGACA 59.367 36.000 0.00 0.00 0.00 3.58
233 234 5.633182 TGCATTTTTCGAGGCTAATTTTGAC 59.367 36.000 0.00 0.00 0.00 3.18
234 235 5.777802 TGCATTTTTCGAGGCTAATTTTGA 58.222 33.333 0.00 0.00 0.00 2.69
235 236 6.651755 ATGCATTTTTCGAGGCTAATTTTG 57.348 33.333 0.00 0.00 0.00 2.44
236 237 7.492344 CCTAATGCATTTTTCGAGGCTAATTTT 59.508 33.333 18.75 0.00 0.00 1.82
237 238 6.980397 CCTAATGCATTTTTCGAGGCTAATTT 59.020 34.615 18.75 0.00 0.00 1.82
238 239 6.507023 CCTAATGCATTTTTCGAGGCTAATT 58.493 36.000 18.75 0.00 0.00 1.40
239 240 5.507985 GCCTAATGCATTTTTCGAGGCTAAT 60.508 40.000 30.34 3.45 43.77 1.73
240 241 4.202010 GCCTAATGCATTTTTCGAGGCTAA 60.202 41.667 30.34 6.47 43.77 3.09
241 242 3.315191 GCCTAATGCATTTTTCGAGGCTA 59.685 43.478 30.34 6.91 43.77 3.93
242 243 2.099756 GCCTAATGCATTTTTCGAGGCT 59.900 45.455 30.34 4.50 43.77 4.58
243 244 2.463876 GCCTAATGCATTTTTCGAGGC 58.536 47.619 26.43 26.43 41.09 4.70
244 245 2.223805 GGGCCTAATGCATTTTTCGAGG 60.224 50.000 18.75 17.98 43.89 4.63
245 246 2.689983 AGGGCCTAATGCATTTTTCGAG 59.310 45.455 18.75 8.21 43.89 4.04
246 247 2.733956 AGGGCCTAATGCATTTTTCGA 58.266 42.857 18.75 0.00 43.89 3.71
247 248 4.853924 ATAGGGCCTAATGCATTTTTCG 57.146 40.909 18.91 3.96 43.89 3.46
248 249 8.807948 TCTATATAGGGCCTAATGCATTTTTC 57.192 34.615 18.91 6.60 43.89 2.29
249 250 9.193806 CATCTATATAGGGCCTAATGCATTTTT 57.806 33.333 18.91 0.00 43.89 1.94
250 251 7.781693 CCATCTATATAGGGCCTAATGCATTTT 59.218 37.037 18.91 0.30 43.89 1.82
251 252 7.129349 TCCATCTATATAGGGCCTAATGCATTT 59.871 37.037 18.91 1.12 43.89 2.32
252 253 6.621098 TCCATCTATATAGGGCCTAATGCATT 59.379 38.462 18.91 17.56 43.89 3.56
253 254 6.153204 TCCATCTATATAGGGCCTAATGCAT 58.847 40.000 18.91 10.87 43.89 3.96
254 255 5.537914 TCCATCTATATAGGGCCTAATGCA 58.462 41.667 18.91 0.00 43.89 3.96
255 256 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
256 257 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
257 258 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
258 259 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
259 260 6.432190 TTCCTTCCATCTATATAGGGCCTA 57.568 41.667 17.16 17.16 0.00 3.93
260 261 4.994411 TCCTTCCATCTATATAGGGCCT 57.006 45.455 12.58 12.58 0.00 5.19
261 262 4.410555 CCTTCCTTCCATCTATATAGGGCC 59.589 50.000 9.89 0.00 0.00 5.80
262 263 5.281314 TCCTTCCTTCCATCTATATAGGGC 58.719 45.833 9.89 0.00 0.00 5.19
263 264 6.507568 ACTCCTTCCTTCCATCTATATAGGG 58.492 44.000 9.89 4.49 0.00 3.53
264 265 8.116669 TGTACTCCTTCCTTCCATCTATATAGG 58.883 40.741 9.89 0.00 0.00 2.57
265 266 9.535170 TTGTACTCCTTCCTTCCATCTATATAG 57.465 37.037 3.10 3.10 0.00 1.31
266 267 9.892444 TTTGTACTCCTTCCTTCCATCTATATA 57.108 33.333 0.00 0.00 0.00 0.86
267 268 8.798975 TTTGTACTCCTTCCTTCCATCTATAT 57.201 34.615 0.00 0.00 0.00 0.86
268 269 8.798975 ATTTGTACTCCTTCCTTCCATCTATA 57.201 34.615 0.00 0.00 0.00 1.31
269 270 7.698163 ATTTGTACTCCTTCCTTCCATCTAT 57.302 36.000 0.00 0.00 0.00 1.98
270 271 7.510675 AATTTGTACTCCTTCCTTCCATCTA 57.489 36.000 0.00 0.00 0.00 1.98
271 272 6.394345 AATTTGTACTCCTTCCTTCCATCT 57.606 37.500 0.00 0.00 0.00 2.90
272 273 7.993183 TGATAATTTGTACTCCTTCCTTCCATC 59.007 37.037 0.00 0.00 0.00 3.51
273 274 7.872138 TGATAATTTGTACTCCTTCCTTCCAT 58.128 34.615 0.00 0.00 0.00 3.41
274 275 7.265599 TGATAATTTGTACTCCTTCCTTCCA 57.734 36.000 0.00 0.00 0.00 3.53
275 276 8.753497 AATGATAATTTGTACTCCTTCCTTCC 57.247 34.615 0.00 0.00 0.00 3.46
276 277 9.620259 AGAATGATAATTTGTACTCCTTCCTTC 57.380 33.333 0.00 0.00 0.00 3.46
277 278 9.981460 AAGAATGATAATTTGTACTCCTTCCTT 57.019 29.630 0.00 0.00 0.00 3.36
278 279 9.981460 AAAGAATGATAATTTGTACTCCTTCCT 57.019 29.630 0.00 0.00 0.00 3.36
281 282 9.981460 AGGAAAGAATGATAATTTGTACTCCTT 57.019 29.630 0.00 0.00 0.00 3.36
282 283 9.981460 AAGGAAAGAATGATAATTTGTACTCCT 57.019 29.630 0.00 0.00 0.00 3.69
285 286 9.533831 ACCAAGGAAAGAATGATAATTTGTACT 57.466 29.630 0.00 0.00 0.00 2.73
316 317 7.799784 GGCACGTTATTAAGAAAACTTACAGA 58.200 34.615 0.00 0.00 0.00 3.41
408 409 2.804697 TTTTTAGGAAAAGTGCCCGC 57.195 45.000 0.00 0.00 31.41 6.13
469 470 3.566523 GTGTATCGGATCGATTCTGTCC 58.433 50.000 8.11 0.00 44.59 4.02
483 484 0.391661 AAGCTGCTGGTGGTGTATCG 60.392 55.000 1.35 0.00 0.00 2.92
484 485 1.826385 AAAGCTGCTGGTGGTGTATC 58.174 50.000 1.35 0.00 0.00 2.24
507 508 1.787057 CGGGAGAGACGATCGAAGGG 61.787 65.000 24.34 0.00 0.00 3.95
508 509 1.096386 ACGGGAGAGACGATCGAAGG 61.096 60.000 24.34 4.31 34.93 3.46
509 510 0.028242 CACGGGAGAGACGATCGAAG 59.972 60.000 24.34 5.82 34.93 3.79
511 512 2.470362 GCACGGGAGAGACGATCGA 61.470 63.158 24.34 0.00 34.93 3.59
513 514 1.787057 ATCGCACGGGAGAGACGATC 61.787 60.000 0.00 0.00 35.97 3.69
514 515 0.534427 TATCGCACGGGAGAGACGAT 60.534 55.000 0.00 0.00 40.36 3.73
712 800 2.808206 GCCGGTGGGATAGACTGGG 61.808 68.421 1.90 0.00 39.89 4.45
715 803 2.423898 CGTGCCGGTGGGATAGACT 61.424 63.158 1.90 0.00 34.06 3.24
716 804 2.106332 CGTGCCGGTGGGATAGAC 59.894 66.667 1.90 0.00 34.06 2.59
840 937 1.353103 CGCCTAGCAAGCAAATCCG 59.647 57.895 0.00 0.00 0.00 4.18
873 970 2.944349 GTTGTCCCGTGGAGTACAAAAA 59.056 45.455 0.00 0.00 33.92 1.94
900 997 0.249868 TTTGCTCAGGTGACGGACTG 60.250 55.000 0.00 0.00 36.07 3.51
903 1000 3.270027 CATATTTTGCTCAGGTGACGGA 58.730 45.455 0.00 0.00 0.00 4.69
916 1013 4.571984 TCTCGTGGTGATCTGCATATTTTG 59.428 41.667 0.00 0.00 0.00 2.44
1122 1223 0.994995 CATTCTCACGGAACTCTGCG 59.005 55.000 0.00 0.00 42.95 5.18
1145 1246 0.802607 GTTCCTGCGATCGACACTCC 60.803 60.000 21.57 0.00 0.00 3.85
1152 1253 1.148310 ACACAAAGTTCCTGCGATCG 58.852 50.000 11.69 11.69 0.00 3.69
1191 1292 3.325753 AGCTGCCGCTTCCCTCTT 61.326 61.111 0.00 0.00 46.47 2.85
1321 1422 7.031372 TCATGTAACATCCTTACTCGTTGTAC 58.969 38.462 0.00 0.00 0.00 2.90
1326 1427 6.932400 TGTTTTCATGTAACATCCTTACTCGT 59.068 34.615 10.65 0.00 30.96 4.18
1327 1428 7.359262 TGTTTTCATGTAACATCCTTACTCG 57.641 36.000 10.65 0.00 30.96 4.18
1341 1442 7.552050 TTGGGAAAATCCTATGTTTTCATGT 57.448 32.000 11.88 0.00 43.78 3.21
1437 1538 5.106673 GCAAGGTGTAACTATTCACTTGACC 60.107 44.000 0.00 0.00 36.74 4.02
1461 1562 5.440610 AGCATCTCCTACAAATTACCAAGG 58.559 41.667 0.00 0.00 0.00 3.61
1614 1717 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1615 1718 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1616 1719 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1617 1720 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1662 1765 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1663 1766 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1664 1767 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1665 1768 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1666 1769 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1667 1770 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1668 1771 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1669 1772 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1670 1773 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1676 1779 9.082313 CCTTTATACTCCCTCCGTAAACTAATA 57.918 37.037 0.00 0.00 0.00 0.98
1677 1780 7.566509 ACCTTTATACTCCCTCCGTAAACTAAT 59.433 37.037 0.00 0.00 0.00 1.73
1678 1781 6.897413 ACCTTTATACTCCCTCCGTAAACTAA 59.103 38.462 0.00 0.00 0.00 2.24
1679 1782 6.435164 ACCTTTATACTCCCTCCGTAAACTA 58.565 40.000 0.00 0.00 0.00 2.24
1680 1783 5.275630 ACCTTTATACTCCCTCCGTAAACT 58.724 41.667 0.00 0.00 0.00 2.66
1681 1784 5.604758 ACCTTTATACTCCCTCCGTAAAC 57.395 43.478 0.00 0.00 0.00 2.01
1682 1785 7.919385 ATTACCTTTATACTCCCTCCGTAAA 57.081 36.000 0.00 0.00 0.00 2.01
1683 1786 7.919385 AATTACCTTTATACTCCCTCCGTAA 57.081 36.000 0.00 0.00 0.00 3.18
1684 1787 8.227507 ACTAATTACCTTTATACTCCCTCCGTA 58.772 37.037 0.00 0.00 0.00 4.02
1685 1788 7.015001 CACTAATTACCTTTATACTCCCTCCGT 59.985 40.741 0.00 0.00 0.00 4.69
1686 1789 7.376615 CACTAATTACCTTTATACTCCCTCCG 58.623 42.308 0.00 0.00 0.00 4.63
1687 1790 7.160049 GCACTAATTACCTTTATACTCCCTCC 58.840 42.308 0.00 0.00 0.00 4.30
1688 1791 7.732996 TGCACTAATTACCTTTATACTCCCTC 58.267 38.462 0.00 0.00 0.00 4.30
1689 1792 7.685849 TGCACTAATTACCTTTATACTCCCT 57.314 36.000 0.00 0.00 0.00 4.20
1690 1793 8.208903 TCTTGCACTAATTACCTTTATACTCCC 58.791 37.037 0.00 0.00 0.00 4.30
1691 1794 9.780186 ATCTTGCACTAATTACCTTTATACTCC 57.220 33.333 0.00 0.00 0.00 3.85
1693 1796 9.477484 CGATCTTGCACTAATTACCTTTATACT 57.523 33.333 0.00 0.00 0.00 2.12
1694 1797 9.472361 TCGATCTTGCACTAATTACCTTTATAC 57.528 33.333 0.00 0.00 0.00 1.47
1696 1799 8.827677 GTTCGATCTTGCACTAATTACCTTTAT 58.172 33.333 0.00 0.00 0.00 1.40
1730 1833 9.755804 TGATACTTGAGATGTTAGCAAATAGAG 57.244 33.333 0.00 0.00 0.00 2.43
1825 1934 7.339482 AGGATTATCTCGAGTTTTAGCCTTTT 58.661 34.615 13.13 0.00 0.00 2.27
1839 1948 3.993081 GCCAGAATGTGAGGATTATCTCG 59.007 47.826 0.00 0.00 36.61 4.04
1840 1949 4.965814 TGCCAGAATGTGAGGATTATCTC 58.034 43.478 0.00 0.00 0.00 2.75
1856 1968 5.181622 GCAAAATTCCAAAATCAATGCCAGA 59.818 36.000 0.00 0.00 0.00 3.86
1859 1971 5.373981 TGCAAAATTCCAAAATCAATGCC 57.626 34.783 0.00 0.00 31.65 4.40
1976 2088 3.378742 TCGTATGCGGCCATTTTTATGTT 59.621 39.130 2.24 0.00 38.89 2.71
1996 2109 8.190888 AGAAGTTACATCATAAAGAGCTTTCG 57.809 34.615 0.00 0.00 34.23 3.46
2061 2174 3.060602 GGGCAATAAGATGCTACGAGAC 58.939 50.000 0.00 0.00 45.68 3.36
2063 2176 3.006323 AGAGGGCAATAAGATGCTACGAG 59.994 47.826 0.00 0.00 45.68 4.18
2152 2265 6.258230 TCCAATGTAAATGCTCTTTCACAG 57.742 37.500 0.00 0.00 0.00 3.66
2206 2319 3.957497 ACACCATTGCTGAGTTTAAACCA 59.043 39.130 14.72 11.15 0.00 3.67
2215 2328 6.308766 GCATAAAAAGTAACACCATTGCTGAG 59.691 38.462 0.00 0.00 0.00 3.35
2266 2379 9.719355 TTAACTCAATTGAGCACATAAGTCTAA 57.281 29.630 30.95 12.30 45.79 2.10
2366 2480 8.565896 AAGTGAAATCATGCACTAAGACATAA 57.434 30.769 4.41 0.00 44.06 1.90
2369 2483 6.347644 CGAAAGTGAAATCATGCACTAAGACA 60.348 38.462 4.41 0.00 44.06 3.41
2370 2484 6.017933 CGAAAGTGAAATCATGCACTAAGAC 58.982 40.000 4.41 0.00 44.06 3.01
2371 2485 5.700832 ACGAAAGTGAAATCATGCACTAAGA 59.299 36.000 4.41 0.00 44.06 2.10
2391 2569 0.179234 TGCTGGTGGAGAACAACGAA 59.821 50.000 0.00 0.00 40.67 3.85
2392 2570 0.249868 CTGCTGGTGGAGAACAACGA 60.250 55.000 0.00 0.00 40.67 3.85
2452 2630 7.805071 AGACGATAAACTCATTGCTTTTTCAAG 59.195 33.333 0.00 0.00 0.00 3.02
2512 2690 0.458669 CATTGCTTGATCTGGCCCAC 59.541 55.000 0.00 0.00 0.00 4.61
2533 2711 0.813184 ACCATCTTCCATGCTTTGCG 59.187 50.000 0.00 0.00 0.00 4.85
2567 2746 2.086869 CTGTGGTGATGATGGTTCCAC 58.913 52.381 5.80 5.80 45.83 4.02
2824 3003 4.503714 ACAAAGAAGTGACTCCCTCAAA 57.496 40.909 0.00 0.00 0.00 2.69
2825 3004 5.825593 ATACAAAGAAGTGACTCCCTCAA 57.174 39.130 0.00 0.00 0.00 3.02
2826 3005 5.825593 AATACAAAGAAGTGACTCCCTCA 57.174 39.130 0.00 0.00 0.00 3.86
2827 3006 6.072452 CCAAAATACAAAGAAGTGACTCCCTC 60.072 42.308 0.00 0.00 0.00 4.30
2828 3007 5.770162 CCAAAATACAAAGAAGTGACTCCCT 59.230 40.000 0.00 0.00 0.00 4.20
2829 3008 5.048013 CCCAAAATACAAAGAAGTGACTCCC 60.048 44.000 0.00 0.00 0.00 4.30
2830 3009 5.564848 GCCCAAAATACAAAGAAGTGACTCC 60.565 44.000 0.00 0.00 0.00 3.85
2831 3010 5.461526 GCCCAAAATACAAAGAAGTGACTC 58.538 41.667 0.00 0.00 0.00 3.36
2832 3011 4.023193 CGCCCAAAATACAAAGAAGTGACT 60.023 41.667 0.00 0.00 0.00 3.41
2833 3012 4.226761 CGCCCAAAATACAAAGAAGTGAC 58.773 43.478 0.00 0.00 0.00 3.67
2834 3013 3.886505 ACGCCCAAAATACAAAGAAGTGA 59.113 39.130 0.00 0.00 0.00 3.41
2835 3014 3.980775 CACGCCCAAAATACAAAGAAGTG 59.019 43.478 0.00 0.00 0.00 3.16
2836 3015 3.886505 TCACGCCCAAAATACAAAGAAGT 59.113 39.130 0.00 0.00 0.00 3.01
2837 3016 4.497473 TCACGCCCAAAATACAAAGAAG 57.503 40.909 0.00 0.00 0.00 2.85
2838 3017 4.098044 TGTTCACGCCCAAAATACAAAGAA 59.902 37.500 0.00 0.00 0.00 2.52
2839 3018 3.632604 TGTTCACGCCCAAAATACAAAGA 59.367 39.130 0.00 0.00 0.00 2.52
2840 3019 3.971150 TGTTCACGCCCAAAATACAAAG 58.029 40.909 0.00 0.00 0.00 2.77
2841 3020 3.381908 ACTGTTCACGCCCAAAATACAAA 59.618 39.130 0.00 0.00 0.00 2.83
2842 3021 2.952978 ACTGTTCACGCCCAAAATACAA 59.047 40.909 0.00 0.00 0.00 2.41
2843 3022 2.577700 ACTGTTCACGCCCAAAATACA 58.422 42.857 0.00 0.00 0.00 2.29
2844 3023 4.957759 ATACTGTTCACGCCCAAAATAC 57.042 40.909 0.00 0.00 0.00 1.89
2845 3024 5.968528 AAATACTGTTCACGCCCAAAATA 57.031 34.783 0.00 0.00 0.00 1.40
2846 3025 4.864704 AAATACTGTTCACGCCCAAAAT 57.135 36.364 0.00 0.00 0.00 1.82
2847 3026 4.657436 AAAATACTGTTCACGCCCAAAA 57.343 36.364 0.00 0.00 0.00 2.44
2848 3027 4.657436 AAAAATACTGTTCACGCCCAAA 57.343 36.364 0.00 0.00 0.00 3.28
2869 3048 7.385478 GGCCCGATTAAGAAAACATAACAAAAA 59.615 33.333 0.00 0.00 0.00 1.94
2870 3049 6.869388 GGCCCGATTAAGAAAACATAACAAAA 59.131 34.615 0.00 0.00 0.00 2.44
2871 3050 6.391537 GGCCCGATTAAGAAAACATAACAAA 58.608 36.000 0.00 0.00 0.00 2.83
2872 3051 5.105675 GGGCCCGATTAAGAAAACATAACAA 60.106 40.000 5.69 0.00 0.00 2.83
2873 3052 4.399934 GGGCCCGATTAAGAAAACATAACA 59.600 41.667 5.69 0.00 0.00 2.41
2874 3053 4.202080 GGGGCCCGATTAAGAAAACATAAC 60.202 45.833 17.79 0.00 0.00 1.89
2875 3054 3.955551 GGGGCCCGATTAAGAAAACATAA 59.044 43.478 17.79 0.00 0.00 1.90
2876 3055 3.203487 AGGGGCCCGATTAAGAAAACATA 59.797 43.478 18.95 0.00 0.00 2.29
2877 3056 2.024369 AGGGGCCCGATTAAGAAAACAT 60.024 45.455 18.95 0.00 0.00 2.71
2878 3057 1.356398 AGGGGCCCGATTAAGAAAACA 59.644 47.619 18.95 0.00 0.00 2.83
2879 3058 2.022195 GAGGGGCCCGATTAAGAAAAC 58.978 52.381 18.95 0.00 0.00 2.43
2880 3059 1.064240 GGAGGGGCCCGATTAAGAAAA 60.064 52.381 18.95 0.00 0.00 2.29
2881 3060 0.549469 GGAGGGGCCCGATTAAGAAA 59.451 55.000 18.95 0.00 0.00 2.52
2882 3061 2.227737 GGAGGGGCCCGATTAAGAA 58.772 57.895 18.95 0.00 0.00 2.52
2883 3062 3.981313 GGAGGGGCCCGATTAAGA 58.019 61.111 18.95 0.00 0.00 2.10
2892 3071 1.149101 TTATGATCTTGGGAGGGGCC 58.851 55.000 0.00 0.00 0.00 5.80
2893 3072 3.532641 ATTTATGATCTTGGGAGGGGC 57.467 47.619 0.00 0.00 0.00 5.80
2894 3073 5.473504 CGTAAATTTATGATCTTGGGAGGGG 59.526 44.000 11.35 0.00 0.00 4.79
2895 3074 6.296026 TCGTAAATTTATGATCTTGGGAGGG 58.704 40.000 14.79 0.00 0.00 4.30
2896 3075 7.986085 ATCGTAAATTTATGATCTTGGGAGG 57.014 36.000 22.02 0.00 35.08 4.30
2897 3076 8.507249 GGAATCGTAAATTTATGATCTTGGGAG 58.493 37.037 25.89 0.00 38.18 4.30
2898 3077 8.217799 AGGAATCGTAAATTTATGATCTTGGGA 58.782 33.333 25.89 4.09 38.18 4.37
2899 3078 8.292448 CAGGAATCGTAAATTTATGATCTTGGG 58.708 37.037 25.89 14.71 38.18 4.12
2900 3079 7.805071 GCAGGAATCGTAAATTTATGATCTTGG 59.195 37.037 25.89 18.55 38.18 3.61
2901 3080 7.805071 GGCAGGAATCGTAAATTTATGATCTTG 59.195 37.037 25.89 23.30 38.18 3.02
2902 3081 7.721399 AGGCAGGAATCGTAAATTTATGATCTT 59.279 33.333 25.89 16.24 38.18 2.40
2903 3082 7.227156 AGGCAGGAATCGTAAATTTATGATCT 58.773 34.615 25.89 18.89 38.18 2.75
2904 3083 7.361286 GGAGGCAGGAATCGTAAATTTATGATC 60.361 40.741 25.89 19.69 38.18 2.92
2905 3084 6.431234 GGAGGCAGGAATCGTAAATTTATGAT 59.569 38.462 22.02 22.02 40.22 2.45
2906 3085 5.763204 GGAGGCAGGAATCGTAAATTTATGA 59.237 40.000 19.75 19.75 33.57 2.15
2907 3086 5.334105 CGGAGGCAGGAATCGTAAATTTATG 60.334 44.000 10.65 10.65 0.00 1.90
2908 3087 4.755123 CGGAGGCAGGAATCGTAAATTTAT 59.245 41.667 0.31 0.00 0.00 1.40
2909 3088 4.124238 CGGAGGCAGGAATCGTAAATTTA 58.876 43.478 0.00 0.00 0.00 1.40
2910 3089 2.943033 CGGAGGCAGGAATCGTAAATTT 59.057 45.455 0.00 0.00 0.00 1.82
2911 3090 2.561569 CGGAGGCAGGAATCGTAAATT 58.438 47.619 0.00 0.00 0.00 1.82
2912 3091 1.810412 GCGGAGGCAGGAATCGTAAAT 60.810 52.381 0.00 0.00 39.62 1.40
2913 3092 0.461339 GCGGAGGCAGGAATCGTAAA 60.461 55.000 0.00 0.00 39.62 2.01
2914 3093 1.143183 GCGGAGGCAGGAATCGTAA 59.857 57.895 0.00 0.00 39.62 3.18
2915 3094 2.812499 GCGGAGGCAGGAATCGTA 59.188 61.111 0.00 0.00 39.62 3.43
2926 3105 3.596066 CTGTGGTCAGTGGCGGAGG 62.596 68.421 0.00 0.00 36.97 4.30
2927 3106 2.047844 CTGTGGTCAGTGGCGGAG 60.048 66.667 0.00 0.00 36.97 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.