Multiple sequence alignment - TraesCS4A01G013800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G013800 chr4A 100.000 3772 0 0 1 3772 8203143 8206914 0.000000e+00 6966
1 TraesCS4A01G013800 chr4D 95.877 2959 92 14 825 3772 460048542 460045603 0.000000e+00 4761
2 TraesCS4A01G013800 chr4D 93.852 553 10 4 1 544 460049109 460048572 0.000000e+00 811
3 TraesCS4A01G013800 chr4D 95.374 281 10 3 545 823 308846309 308846030 9.610000e-121 444
4 TraesCS4A01G013800 chr4D 93.594 281 14 4 544 822 9997777 9998055 2.100000e-112 416
5 TraesCS4A01G013800 chr6B 98.592 284 3 1 540 822 471103241 471103524 5.620000e-138 501
6 TraesCS4A01G013800 chr3A 98.571 280 2 2 544 822 160506091 160505813 9.410000e-136 494
7 TraesCS4A01G013800 chr3A 91.722 302 23 2 544 844 561958550 561958250 5.830000e-113 418
8 TraesCS4A01G013800 chr1B 95.000 280 12 2 544 822 179804962 179805240 4.470000e-119 438
9 TraesCS4A01G013800 chr3B 93.929 280 15 2 544 822 587002905 587003183 4.500000e-114 422
10 TraesCS4A01G013800 chr7B 93.571 280 16 2 544 822 162133959 162134237 2.100000e-112 416
11 TraesCS4A01G013800 chr6D 93.594 281 15 3 544 822 319875395 319875116 2.100000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G013800 chr4A 8203143 8206914 3771 False 6966 6966 100.0000 1 3772 1 chr4A.!!$F1 3771
1 TraesCS4A01G013800 chr4D 460045603 460049109 3506 True 2786 4761 94.8645 1 3772 2 chr4D.!!$R2 3771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 610 0.032912 TGCTACAGTATCCCGGGACA 60.033 55.0 29.69 13.36 0.00 4.02 F
782 792 0.249398 AAAGGCAGGGTACTGTAGCG 59.751 55.0 10.55 0.00 46.62 4.26 F
2063 2073 0.181350 AGGAGGGTGATGCCGAATTC 59.819 55.0 0.00 0.00 38.44 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2007 0.179073 ACTCATCGCCCAGCATGTAC 60.179 55.0 0.0 0.0 0.00 2.90 R
2147 2157 0.250234 CCAGCTTCTTCGGTCCATCA 59.750 55.0 0.0 0.0 0.00 3.07 R
3031 3050 0.588252 CCTGAAGCAGTGGTGAAACG 59.412 55.0 0.0 0.0 38.12 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 250 2.854522 GCCAAGCGGACAACATACT 58.145 52.632 0.00 0.00 0.00 2.12
241 251 0.447801 GCCAAGCGGACAACATACTG 59.552 55.000 0.00 0.00 0.00 2.74
275 285 1.080995 GTCGACACAGCTGCTCATCC 61.081 60.000 15.27 0.00 0.00 3.51
348 358 0.792640 CTGTGGCGATTGTGTCTGAC 59.207 55.000 0.00 0.00 0.00 3.51
359 369 3.678921 TGTCTGACGACAACAAGGG 57.321 52.632 2.98 0.00 46.61 3.95
369 379 3.566742 ACGACAACAAGGGGAAATTACAC 59.433 43.478 0.00 0.00 0.00 2.90
403 413 2.747460 TTCTGATGGCTGCCGCAC 60.747 61.111 14.98 8.31 38.10 5.34
544 554 7.715686 CCGTGCTCTATATATATGTAGGACAGA 59.284 40.741 20.59 9.04 0.00 3.41
545 555 9.110502 CGTGCTCTATATATATGTAGGACAGAA 57.889 37.037 20.59 0.04 0.00 3.02
550 560 4.803098 ATATATGTAGGACAGAACCGGC 57.197 45.455 0.00 0.00 34.73 6.13
551 561 2.154567 TATGTAGGACAGAACCGGCT 57.845 50.000 0.00 0.00 34.73 5.52
552 562 0.824759 ATGTAGGACAGAACCGGCTC 59.175 55.000 0.00 0.00 34.73 4.70
553 563 1.255667 TGTAGGACAGAACCGGCTCC 61.256 60.000 0.00 0.00 34.73 4.70
554 564 0.971447 GTAGGACAGAACCGGCTCCT 60.971 60.000 0.00 5.90 36.99 3.69
555 565 0.683504 TAGGACAGAACCGGCTCCTC 60.684 60.000 0.00 0.00 34.78 3.71
556 566 1.985116 GGACAGAACCGGCTCCTCT 60.985 63.158 0.00 0.00 0.00 3.69
557 567 0.683504 GGACAGAACCGGCTCCTCTA 60.684 60.000 0.00 0.00 0.00 2.43
564 574 3.449227 CGGCTCCTCTACCGTGCA 61.449 66.667 0.00 0.00 44.46 4.57
565 575 2.496817 GGCTCCTCTACCGTGCAG 59.503 66.667 0.00 0.00 0.00 4.41
566 576 2.202810 GCTCCTCTACCGTGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
567 577 2.103143 CTCCTCTACCGTGCAGCG 59.897 66.667 0.00 0.00 40.95 5.18
585 595 4.175337 GGCACGGCAGGGATGCTA 62.175 66.667 0.00 0.00 39.38 3.49
586 596 2.897350 GCACGGCAGGGATGCTAC 60.897 66.667 0.00 0.00 36.40 3.58
587 597 2.584064 CACGGCAGGGATGCTACA 59.416 61.111 0.00 0.00 34.73 2.74
588 598 1.522355 CACGGCAGGGATGCTACAG 60.522 63.158 0.00 0.00 34.73 2.74
589 599 1.990060 ACGGCAGGGATGCTACAGT 60.990 57.895 0.00 0.00 34.73 3.55
590 600 0.686441 ACGGCAGGGATGCTACAGTA 60.686 55.000 0.00 0.00 34.73 2.74
591 601 0.681733 CGGCAGGGATGCTACAGTAT 59.318 55.000 0.00 0.00 34.73 2.12
592 602 1.337260 CGGCAGGGATGCTACAGTATC 60.337 57.143 0.00 0.00 36.58 2.24
598 608 1.629043 GATGCTACAGTATCCCGGGA 58.371 55.000 29.18 29.18 32.06 5.14
599 609 1.272769 GATGCTACAGTATCCCGGGAC 59.727 57.143 29.69 15.88 32.06 4.46
600 610 0.032912 TGCTACAGTATCCCGGGACA 60.033 55.000 29.69 13.36 0.00 4.02
601 611 0.674534 GCTACAGTATCCCGGGACAG 59.325 60.000 29.69 18.21 0.00 3.51
602 612 2.027949 GCTACAGTATCCCGGGACAGT 61.028 57.143 29.69 22.96 0.00 3.55
603 613 1.681793 CTACAGTATCCCGGGACAGTG 59.318 57.143 31.10 31.10 0.00 3.66
604 614 0.252103 ACAGTATCCCGGGACAGTGT 60.252 55.000 32.45 32.45 31.15 3.55
605 615 1.006281 ACAGTATCCCGGGACAGTGTA 59.994 52.381 35.78 17.96 33.93 2.90
606 616 2.104967 CAGTATCCCGGGACAGTGTAA 58.895 52.381 29.69 0.00 0.00 2.41
607 617 2.498481 CAGTATCCCGGGACAGTGTAAA 59.502 50.000 29.69 0.00 0.00 2.01
608 618 3.134081 CAGTATCCCGGGACAGTGTAAAT 59.866 47.826 29.69 9.34 0.00 1.40
609 619 4.342951 CAGTATCCCGGGACAGTGTAAATA 59.657 45.833 29.69 8.12 0.00 1.40
610 620 3.832615 ATCCCGGGACAGTGTAAATAC 57.167 47.619 29.69 0.00 0.00 1.89
611 621 2.538222 TCCCGGGACAGTGTAAATACA 58.462 47.619 22.63 0.00 0.00 2.29
612 622 2.498481 TCCCGGGACAGTGTAAATACAG 59.502 50.000 22.63 0.00 36.78 2.74
613 623 2.498481 CCCGGGACAGTGTAAATACAGA 59.502 50.000 18.48 0.00 36.78 3.41
614 624 3.055675 CCCGGGACAGTGTAAATACAGAA 60.056 47.826 18.48 0.00 36.78 3.02
615 625 4.181578 CCGGGACAGTGTAAATACAGAAG 58.818 47.826 0.00 0.00 36.78 2.85
616 626 4.181578 CGGGACAGTGTAAATACAGAAGG 58.818 47.826 0.00 0.00 36.78 3.46
617 627 3.939592 GGGACAGTGTAAATACAGAAGGC 59.060 47.826 0.00 0.00 36.78 4.35
618 628 4.564821 GGGACAGTGTAAATACAGAAGGCA 60.565 45.833 0.00 0.00 36.78 4.75
619 629 4.392138 GGACAGTGTAAATACAGAAGGCAC 59.608 45.833 0.00 0.00 36.78 5.01
620 630 3.994392 ACAGTGTAAATACAGAAGGCACG 59.006 43.478 0.00 0.00 36.78 5.34
621 631 3.370978 CAGTGTAAATACAGAAGGCACGG 59.629 47.826 0.00 0.00 36.78 4.94
622 632 2.095372 GTGTAAATACAGAAGGCACGGC 59.905 50.000 0.00 0.00 36.78 5.68
623 633 2.289756 TGTAAATACAGAAGGCACGGCA 60.290 45.455 0.00 0.00 0.00 5.69
624 634 1.453155 AAATACAGAAGGCACGGCAG 58.547 50.000 0.00 0.00 0.00 4.85
625 635 0.392998 AATACAGAAGGCACGGCAGG 60.393 55.000 0.00 0.00 0.00 4.85
626 636 1.264749 ATACAGAAGGCACGGCAGGA 61.265 55.000 0.00 0.00 0.00 3.86
627 637 1.264749 TACAGAAGGCACGGCAGGAT 61.265 55.000 0.00 0.00 0.00 3.24
628 638 2.110967 CAGAAGGCACGGCAGGATG 61.111 63.158 0.00 0.00 40.87 3.51
629 639 2.268920 GAAGGCACGGCAGGATGA 59.731 61.111 0.00 0.00 39.69 2.92
630 640 2.045926 AAGGCACGGCAGGATGAC 60.046 61.111 0.00 0.00 44.64 3.06
637 647 4.865865 GGCAGGATGACTGTAGCC 57.134 61.111 0.00 0.00 44.72 3.93
638 648 1.227380 GGCAGGATGACTGTAGCCG 60.227 63.158 0.00 0.00 44.72 5.52
639 649 2.650813 GGCAGGATGACTGTAGCCGG 62.651 65.000 0.00 0.00 44.72 6.13
640 650 2.504920 CAGGATGACTGTAGCCGGA 58.495 57.895 5.05 0.00 42.42 5.14
641 651 0.824109 CAGGATGACTGTAGCCGGAA 59.176 55.000 5.05 0.00 42.42 4.30
642 652 1.414181 CAGGATGACTGTAGCCGGAAT 59.586 52.381 5.05 0.00 42.42 3.01
643 653 2.119495 AGGATGACTGTAGCCGGAATT 58.881 47.619 5.05 0.00 0.00 2.17
644 654 3.069586 CAGGATGACTGTAGCCGGAATTA 59.930 47.826 5.05 0.00 42.42 1.40
645 655 3.069729 AGGATGACTGTAGCCGGAATTAC 59.930 47.826 5.05 4.84 0.00 1.89
646 656 3.069729 GGATGACTGTAGCCGGAATTACT 59.930 47.826 5.05 0.00 0.00 2.24
647 657 3.520290 TGACTGTAGCCGGAATTACTG 57.480 47.619 5.05 10.72 0.00 2.74
648 658 2.829720 TGACTGTAGCCGGAATTACTGT 59.170 45.455 5.05 13.87 35.51 3.55
649 659 3.259876 TGACTGTAGCCGGAATTACTGTT 59.740 43.478 5.05 0.20 33.76 3.16
650 660 4.251268 GACTGTAGCCGGAATTACTGTTT 58.749 43.478 5.05 0.00 33.76 2.83
651 661 4.000988 ACTGTAGCCGGAATTACTGTTTG 58.999 43.478 5.05 0.00 30.76 2.93
652 662 2.745281 TGTAGCCGGAATTACTGTTTGC 59.255 45.455 5.05 0.00 0.00 3.68
653 663 1.904287 AGCCGGAATTACTGTTTGCA 58.096 45.000 5.05 0.00 0.00 4.08
654 664 2.446435 AGCCGGAATTACTGTTTGCAT 58.554 42.857 5.05 0.00 0.00 3.96
655 665 3.616219 AGCCGGAATTACTGTTTGCATA 58.384 40.909 5.05 0.00 0.00 3.14
656 666 3.377172 AGCCGGAATTACTGTTTGCATAC 59.623 43.478 5.05 0.00 0.00 2.39
657 667 3.377172 GCCGGAATTACTGTTTGCATACT 59.623 43.478 5.05 0.00 0.00 2.12
658 668 4.730613 GCCGGAATTACTGTTTGCATACTG 60.731 45.833 5.05 11.61 0.00 2.74
659 669 4.394920 CCGGAATTACTGTTTGCATACTGT 59.605 41.667 20.11 20.11 34.96 3.55
660 670 5.583061 CCGGAATTACTGTTTGCATACTGTA 59.417 40.000 18.41 18.41 33.15 2.74
661 671 6.238103 CCGGAATTACTGTTTGCATACTGTAG 60.238 42.308 20.31 12.27 35.03 2.74
662 672 6.487103 GGAATTACTGTTTGCATACTGTAGC 58.513 40.000 20.31 15.43 35.03 3.58
663 673 5.718649 ATTACTGTTTGCATACTGTAGCG 57.281 39.130 20.31 2.96 35.03 4.26
664 674 2.346803 ACTGTTTGCATACTGTAGCGG 58.653 47.619 16.10 0.00 0.00 5.52
665 675 2.028476 ACTGTTTGCATACTGTAGCGGA 60.028 45.455 16.10 0.00 0.00 5.54
666 676 3.000041 CTGTTTGCATACTGTAGCGGAA 59.000 45.455 8.78 0.00 0.00 4.30
667 677 3.605634 TGTTTGCATACTGTAGCGGAAT 58.394 40.909 8.78 0.00 0.00 3.01
668 678 4.760878 TGTTTGCATACTGTAGCGGAATA 58.239 39.130 8.78 0.00 0.00 1.75
669 679 5.364778 TGTTTGCATACTGTAGCGGAATAT 58.635 37.500 8.78 0.00 0.00 1.28
670 680 6.517605 TGTTTGCATACTGTAGCGGAATATA 58.482 36.000 8.78 0.00 0.00 0.86
671 681 6.422701 TGTTTGCATACTGTAGCGGAATATAC 59.577 38.462 8.78 0.00 0.00 1.47
672 682 5.977489 TGCATACTGTAGCGGAATATACT 57.023 39.130 0.00 0.00 0.00 2.12
673 683 5.709966 TGCATACTGTAGCGGAATATACTG 58.290 41.667 0.00 0.00 0.00 2.74
674 684 5.243060 TGCATACTGTAGCGGAATATACTGT 59.757 40.000 0.00 0.00 37.66 3.55
675 685 6.157211 GCATACTGTAGCGGAATATACTGTT 58.843 40.000 0.00 0.00 36.11 3.16
676 686 6.645415 GCATACTGTAGCGGAATATACTGTTT 59.355 38.462 0.00 0.00 36.11 2.83
677 687 7.148787 GCATACTGTAGCGGAATATACTGTTTC 60.149 40.741 0.00 0.00 36.11 2.78
678 688 5.279384 ACTGTAGCGGAATATACTGTTTCG 58.721 41.667 0.00 0.00 32.23 3.46
679 689 4.613944 TGTAGCGGAATATACTGTTTCGG 58.386 43.478 0.00 0.00 0.00 4.30
680 690 3.814005 AGCGGAATATACTGTTTCGGT 57.186 42.857 0.00 0.00 0.00 4.69
681 691 4.133013 AGCGGAATATACTGTTTCGGTT 57.867 40.909 0.00 0.00 0.00 4.44
682 692 4.510571 AGCGGAATATACTGTTTCGGTTT 58.489 39.130 0.00 0.00 0.00 3.27
683 693 4.569564 AGCGGAATATACTGTTTCGGTTTC 59.430 41.667 0.00 0.00 0.00 2.78
684 694 4.569564 GCGGAATATACTGTTTCGGTTTCT 59.430 41.667 0.00 0.00 0.00 2.52
685 695 5.501897 GCGGAATATACTGTTTCGGTTTCTG 60.502 44.000 0.00 0.00 0.00 3.02
686 696 5.579511 CGGAATATACTGTTTCGGTTTCTGT 59.420 40.000 0.00 0.00 0.00 3.41
687 697 6.753279 CGGAATATACTGTTTCGGTTTCTGTA 59.247 38.462 0.00 0.00 0.00 2.74
688 698 7.043590 CGGAATATACTGTTTCGGTTTCTGTAG 60.044 40.741 0.00 0.00 0.00 2.74
689 699 7.254353 GGAATATACTGTTTCGGTTTCTGTAGC 60.254 40.741 0.00 0.00 0.00 3.58
690 700 3.188159 ACTGTTTCGGTTTCTGTAGCA 57.812 42.857 0.00 0.00 0.00 3.49
691 701 3.740115 ACTGTTTCGGTTTCTGTAGCAT 58.260 40.909 0.00 0.00 0.00 3.79
692 702 4.134563 ACTGTTTCGGTTTCTGTAGCATT 58.865 39.130 0.00 0.00 0.00 3.56
693 703 4.578928 ACTGTTTCGGTTTCTGTAGCATTT 59.421 37.500 0.00 0.00 0.00 2.32
694 704 4.854399 TGTTTCGGTTTCTGTAGCATTTG 58.146 39.130 0.00 0.00 0.00 2.32
695 705 3.552604 TTCGGTTTCTGTAGCATTTGC 57.447 42.857 0.00 0.00 42.49 3.68
696 706 2.499197 TCGGTTTCTGTAGCATTTGCA 58.501 42.857 5.20 0.00 45.16 4.08
697 707 2.225491 TCGGTTTCTGTAGCATTTGCAC 59.775 45.455 5.20 2.26 45.16 4.57
698 708 2.226437 CGGTTTCTGTAGCATTTGCACT 59.774 45.455 5.20 0.00 45.16 4.40
699 709 3.568538 GGTTTCTGTAGCATTTGCACTG 58.431 45.455 5.20 5.71 45.16 3.66
700 710 3.004734 GGTTTCTGTAGCATTTGCACTGT 59.995 43.478 5.20 0.00 45.16 3.55
701 711 4.499696 GGTTTCTGTAGCATTTGCACTGTT 60.500 41.667 5.20 0.00 45.16 3.16
702 712 4.916983 TTCTGTAGCATTTGCACTGTTT 57.083 36.364 5.20 0.00 45.16 2.83
703 713 4.227512 TCTGTAGCATTTGCACTGTTTG 57.772 40.909 5.20 0.00 45.16 2.93
714 724 2.389713 CACTGTTTGCACACTGTAGC 57.610 50.000 14.18 0.00 0.00 3.58
715 725 1.670295 CACTGTTTGCACACTGTAGCA 59.330 47.619 14.18 3.34 39.32 3.49
722 732 3.417069 TGCACACTGTAGCAAATAGGT 57.583 42.857 4.83 0.00 37.90 3.08
723 733 3.334691 TGCACACTGTAGCAAATAGGTC 58.665 45.455 4.83 0.00 37.90 3.85
724 734 3.007940 TGCACACTGTAGCAAATAGGTCT 59.992 43.478 4.83 0.00 37.90 3.85
725 735 3.372206 GCACACTGTAGCAAATAGGTCTG 59.628 47.826 0.20 0.00 0.00 3.51
726 736 4.820897 CACACTGTAGCAAATAGGTCTGA 58.179 43.478 0.00 0.00 0.00 3.27
727 737 4.867047 CACACTGTAGCAAATAGGTCTGAG 59.133 45.833 0.00 0.00 0.00 3.35
728 738 3.868077 CACTGTAGCAAATAGGTCTGAGC 59.132 47.826 0.00 0.00 0.00 4.26
729 739 3.118592 ACTGTAGCAAATAGGTCTGAGCC 60.119 47.826 2.76 0.00 0.00 4.70
730 740 2.837591 TGTAGCAAATAGGTCTGAGCCA 59.162 45.455 2.76 0.00 0.00 4.75
731 741 3.455910 TGTAGCAAATAGGTCTGAGCCAT 59.544 43.478 2.76 0.00 0.00 4.40
732 742 3.659183 AGCAAATAGGTCTGAGCCATT 57.341 42.857 2.76 0.00 0.00 3.16
733 743 3.973425 AGCAAATAGGTCTGAGCCATTT 58.027 40.909 7.31 7.31 0.00 2.32
734 744 5.116084 AGCAAATAGGTCTGAGCCATTTA 57.884 39.130 11.76 0.00 0.00 1.40
735 745 5.699143 AGCAAATAGGTCTGAGCCATTTAT 58.301 37.500 11.76 3.37 0.00 1.40
736 746 6.841601 AGCAAATAGGTCTGAGCCATTTATA 58.158 36.000 11.76 0.00 0.00 0.98
737 747 6.712547 AGCAAATAGGTCTGAGCCATTTATAC 59.287 38.462 11.76 6.32 0.00 1.47
738 748 6.712547 GCAAATAGGTCTGAGCCATTTATACT 59.287 38.462 11.76 0.00 0.00 2.12
739 749 7.308229 GCAAATAGGTCTGAGCCATTTATACTG 60.308 40.741 11.76 3.49 0.00 2.74
740 750 4.078639 AGGTCTGAGCCATTTATACTGC 57.921 45.455 2.76 0.00 0.00 4.40
741 751 3.455910 AGGTCTGAGCCATTTATACTGCA 59.544 43.478 2.76 0.00 0.00 4.41
742 752 4.103785 AGGTCTGAGCCATTTATACTGCAT 59.896 41.667 2.76 0.00 0.00 3.96
743 753 4.453819 GGTCTGAGCCATTTATACTGCATC 59.546 45.833 0.00 0.00 0.00 3.91
744 754 5.303971 GTCTGAGCCATTTATACTGCATCT 58.696 41.667 0.00 0.00 0.00 2.90
745 755 6.459066 GTCTGAGCCATTTATACTGCATCTA 58.541 40.000 0.00 0.00 0.00 1.98
746 756 6.931281 GTCTGAGCCATTTATACTGCATCTAA 59.069 38.462 0.00 0.00 0.00 2.10
747 757 6.931281 TCTGAGCCATTTATACTGCATCTAAC 59.069 38.462 0.00 0.00 0.00 2.34
748 758 6.591001 TGAGCCATTTATACTGCATCTAACA 58.409 36.000 0.00 0.00 0.00 2.41
749 759 6.707608 TGAGCCATTTATACTGCATCTAACAG 59.292 38.462 0.00 0.00 41.08 3.16
750 760 5.471456 AGCCATTTATACTGCATCTAACAGC 59.529 40.000 0.00 0.00 38.79 4.40
751 761 5.471456 GCCATTTATACTGCATCTAACAGCT 59.529 40.000 0.00 0.00 38.79 4.24
752 762 6.567321 GCCATTTATACTGCATCTAACAGCTG 60.567 42.308 13.48 13.48 38.79 4.24
753 763 6.707608 CCATTTATACTGCATCTAACAGCTGA 59.292 38.462 23.35 0.00 38.79 4.26
754 764 7.389884 CCATTTATACTGCATCTAACAGCTGAT 59.610 37.037 23.35 12.06 38.79 2.90
755 765 9.428097 CATTTATACTGCATCTAACAGCTGATA 57.572 33.333 23.35 12.67 38.79 2.15
756 766 9.650539 ATTTATACTGCATCTAACAGCTGATAG 57.349 33.333 23.35 22.35 38.79 2.08
757 767 6.907853 ATACTGCATCTAACAGCTGATAGA 57.092 37.500 29.20 29.20 38.79 1.98
758 768 5.804944 ACTGCATCTAACAGCTGATAGAT 57.195 39.130 30.56 30.56 39.68 1.98
762 772 4.252073 CATCTAACAGCTGATAGATGCCC 58.748 47.826 39.02 0.00 44.84 5.36
763 773 3.308401 TCTAACAGCTGATAGATGCCCA 58.692 45.455 25.10 6.67 34.41 5.36
764 774 3.711190 TCTAACAGCTGATAGATGCCCAA 59.289 43.478 25.10 6.02 34.41 4.12
765 775 3.370840 AACAGCTGATAGATGCCCAAA 57.629 42.857 23.35 0.00 34.41 3.28
766 776 2.928334 ACAGCTGATAGATGCCCAAAG 58.072 47.619 23.35 0.00 34.41 2.77
767 777 2.228059 CAGCTGATAGATGCCCAAAGG 58.772 52.381 8.42 0.00 0.00 3.11
778 788 1.767692 CCCAAAGGCAGGGTACTGT 59.232 57.895 1.88 0.00 46.62 3.55
779 789 0.988832 CCCAAAGGCAGGGTACTGTA 59.011 55.000 1.88 0.00 46.62 2.74
780 790 1.065418 CCCAAAGGCAGGGTACTGTAG 60.065 57.143 1.88 0.00 46.62 2.74
781 791 1.679032 CCAAAGGCAGGGTACTGTAGC 60.679 57.143 8.46 8.46 46.62 3.58
782 792 0.249398 AAAGGCAGGGTACTGTAGCG 59.751 55.000 10.55 0.00 46.62 4.26
783 793 0.903454 AAGGCAGGGTACTGTAGCGT 60.903 55.000 10.55 8.50 46.62 5.07
784 794 1.141234 GGCAGGGTACTGTAGCGTC 59.859 63.158 9.04 5.32 46.62 5.19
785 795 1.141234 GCAGGGTACTGTAGCGTCC 59.859 63.158 9.04 0.00 46.62 4.79
786 796 1.814527 CAGGGTACTGTAGCGTCCC 59.185 63.158 9.04 6.23 39.92 4.46
787 797 1.696075 AGGGTACTGTAGCGTCCCT 59.304 57.895 10.55 9.06 43.03 4.20
788 798 0.683504 AGGGTACTGTAGCGTCCCTG 60.684 60.000 11.74 0.00 45.64 4.45
789 799 1.141234 GGTACTGTAGCGTCCCTGC 59.859 63.158 0.77 0.00 0.00 4.85
790 800 1.141234 GTACTGTAGCGTCCCTGCC 59.859 63.158 0.00 0.00 34.65 4.85
791 801 2.412323 TACTGTAGCGTCCCTGCCG 61.412 63.158 0.00 0.00 34.65 5.69
792 802 3.760035 CTGTAGCGTCCCTGCCGT 61.760 66.667 0.00 0.00 34.65 5.68
793 803 3.989698 CTGTAGCGTCCCTGCCGTG 62.990 68.421 0.00 0.00 34.65 4.94
799 809 4.008933 GTCCCTGCCGTGCTCACT 62.009 66.667 0.00 0.00 0.00 3.41
800 810 4.007644 TCCCTGCCGTGCTCACTG 62.008 66.667 0.00 0.00 0.00 3.66
810 820 4.485554 GCTCACTGCACGGTAGAG 57.514 61.111 0.00 0.00 42.31 2.43
811 821 1.153745 GCTCACTGCACGGTAGAGG 60.154 63.158 9.56 0.00 42.31 3.69
812 822 1.595993 GCTCACTGCACGGTAGAGGA 61.596 60.000 9.56 0.00 42.31 3.71
813 823 0.453793 CTCACTGCACGGTAGAGGAG 59.546 60.000 0.00 0.00 33.09 3.69
814 824 1.153745 CACTGCACGGTAGAGGAGC 60.154 63.158 0.00 0.00 30.18 4.70
815 825 2.352032 ACTGCACGGTAGAGGAGCC 61.352 63.158 0.00 0.00 30.18 4.70
820 830 2.806237 CGGTAGAGGAGCCGGTTC 59.194 66.667 10.28 10.28 43.85 3.62
821 831 2.783288 CGGTAGAGGAGCCGGTTCC 61.783 68.421 28.69 28.69 43.85 3.62
822 832 2.783288 GGTAGAGGAGCCGGTTCCG 61.783 68.421 29.15 4.08 42.29 4.30
1083 1093 1.406887 CGATCCCCGTTTCTTGATGGT 60.407 52.381 0.00 0.00 0.00 3.55
1194 1204 1.953686 CCGTTTCTTGATGGGTGTTGT 59.046 47.619 0.00 0.00 0.00 3.32
1287 1297 2.202623 GCTGATCGAACGAGCCGT 60.203 61.111 9.81 0.00 43.97 5.68
1341 1351 1.696832 GGTGCGCTCGAATTGGTCTC 61.697 60.000 9.73 0.00 0.00 3.36
1389 1399 5.472478 ACCCCTTCTCGTAATGTTTTCTTTC 59.528 40.000 0.00 0.00 0.00 2.62
1396 1406 7.342194 TCTCGTAATGTTTTCTTTCGTTCTTG 58.658 34.615 0.00 0.00 0.00 3.02
1425 1435 2.475519 CCGTGCTTAATCGCGTTTCAAT 60.476 45.455 5.77 0.00 38.19 2.57
1434 1444 3.048337 TCGCGTTTCAATACTTTCCCT 57.952 42.857 5.77 0.00 0.00 4.20
1452 1462 3.507233 TCCCTCTAATTGCTGTTTGCTTG 59.493 43.478 0.00 0.00 43.37 4.01
1499 1509 6.073602 GGATGTTTCAATTTCTTTTGCAGACC 60.074 38.462 0.00 0.00 0.00 3.85
1517 1527 1.001268 ACCGAGATCGACATGGAATCG 60.001 52.381 3.31 0.00 43.02 3.34
1568 1578 1.743321 CTGACCTCCCCGAGCAGATC 61.743 65.000 0.00 0.00 0.00 2.75
1644 1654 1.888512 TCTGCAAATCTTGGCTCAACC 59.111 47.619 0.00 0.00 39.84 3.77
1715 1725 1.153549 GCACCTGATCGTCCCAGTC 60.154 63.158 0.00 0.00 0.00 3.51
1732 1742 1.273606 AGTCGATCCAGACAACACCAG 59.726 52.381 3.94 0.00 43.24 4.00
1741 1751 3.614092 CAGACAACACCAGGCATAAGAT 58.386 45.455 0.00 0.00 0.00 2.40
1770 1780 3.063997 CCGTGTAGATGCTGTTGATTTCC 59.936 47.826 0.00 0.00 0.00 3.13
1784 1794 2.198304 ATTTCCAGCACCCCGAGGAC 62.198 60.000 0.00 0.00 36.73 3.85
1803 1813 1.948104 CGGTTTCCGCTCCATAATCA 58.052 50.000 0.00 0.00 41.17 2.57
1831 1841 3.074538 ACCAGCTTTGGAGTATTTGAGGT 59.925 43.478 0.00 0.00 0.00 3.85
1851 1861 6.131972 AGGTCTTTGATCCAGATGAAGAAA 57.868 37.500 0.00 0.00 0.00 2.52
1860 1870 1.396301 CAGATGAAGAAACCGCAGAGC 59.604 52.381 0.00 0.00 0.00 4.09
1920 1930 1.876664 CTCGTCTCCTTCGAGCACA 59.123 57.895 2.59 0.00 45.77 4.57
1924 1934 0.389166 GTCTCCTTCGAGCACAGGTG 60.389 60.000 0.92 0.00 35.94 4.00
1986 1996 2.439409 CACAGCTGGATGACCATGAAA 58.561 47.619 19.93 0.00 45.87 2.69
1997 2007 3.689347 TGACCATGAAATCTTGGGACTG 58.311 45.455 16.88 0.00 43.28 3.51
2009 2019 1.452108 GGGACTGTACATGCTGGGC 60.452 63.158 0.00 0.00 0.00 5.36
2033 2043 5.182380 CGATGAGTTTAGGGTCCTCTATCTC 59.818 48.000 0.00 0.00 0.00 2.75
2056 2066 1.202746 GGAAGATGAGGAGGGTGATGC 60.203 57.143 0.00 0.00 0.00 3.91
2057 2067 0.842635 AAGATGAGGAGGGTGATGCC 59.157 55.000 0.00 0.00 0.00 4.40
2063 2073 0.181350 AGGAGGGTGATGCCGAATTC 59.819 55.000 0.00 0.00 38.44 2.17
2086 2096 1.662629 CGTCCTGTCAGTGCATCAATC 59.337 52.381 0.00 0.00 0.00 2.67
2155 2165 2.726821 TCTGCCAGAAATTGATGGACC 58.273 47.619 12.31 0.00 39.02 4.46
2156 2166 1.402968 CTGCCAGAAATTGATGGACCG 59.597 52.381 12.31 0.00 39.02 4.79
2166 2176 0.250234 TGATGGACCGAAGAAGCTGG 59.750 55.000 0.00 0.00 0.00 4.85
2222 2232 3.264845 ATGGTCGGGGCCAACCTT 61.265 61.111 23.19 16.38 42.48 3.50
2250 2260 3.357079 CGTTGGAGCTGTGGCCAC 61.357 66.667 29.67 29.67 39.73 5.01
2251 2261 3.357079 GTTGGAGCTGTGGCCACG 61.357 66.667 30.07 24.12 39.73 4.94
2252 2262 4.641645 TTGGAGCTGTGGCCACGG 62.642 66.667 36.14 36.14 39.73 4.94
2255 2265 4.329545 GAGCTGTGGCCACGGGAA 62.330 66.667 39.12 19.06 39.73 3.97
2272 2282 7.371936 CCACGGGAAATTACAGTTTTTGATTA 58.628 34.615 0.00 0.00 0.00 1.75
2320 2330 0.674895 CTTCCCAAGACCAAGGAGCG 60.675 60.000 0.00 0.00 0.00 5.03
2322 2332 2.348998 CCAAGACCAAGGAGCGCT 59.651 61.111 11.27 11.27 0.00 5.92
2323 2333 1.743252 CCAAGACCAAGGAGCGCTC 60.743 63.158 29.38 29.38 0.00 5.03
2342 2352 2.624838 CTCCAAGAGCAACACCAACAAT 59.375 45.455 0.00 0.00 0.00 2.71
2357 2367 5.181245 CACCAACAATACGATGAAGGTTCTT 59.819 40.000 0.00 0.00 31.85 2.52
2642 2658 2.835431 GGAGAGCTAGCGCCTGGA 60.835 66.667 15.37 0.00 36.60 3.86
2773 2789 1.854280 ACTCTTCCGGGACCTCTAGAT 59.146 52.381 0.00 0.00 0.00 1.98
2774 2790 2.158579 ACTCTTCCGGGACCTCTAGATC 60.159 54.545 0.00 0.00 0.00 2.75
2775 2791 1.850998 TCTTCCGGGACCTCTAGATCA 59.149 52.381 0.00 0.00 0.00 2.92
2776 2792 2.158593 TCTTCCGGGACCTCTAGATCAG 60.159 54.545 0.00 0.00 0.00 2.90
2777 2793 0.178987 TCCGGGACCTCTAGATCAGC 60.179 60.000 0.00 0.00 0.00 4.26
2778 2794 0.468214 CCGGGACCTCTAGATCAGCA 60.468 60.000 0.00 0.00 0.00 4.41
2779 2795 1.403814 CGGGACCTCTAGATCAGCAA 58.596 55.000 0.00 0.00 0.00 3.91
2780 2796 1.067821 CGGGACCTCTAGATCAGCAAC 59.932 57.143 0.00 0.00 0.00 4.17
2781 2797 1.414550 GGGACCTCTAGATCAGCAACC 59.585 57.143 0.00 0.00 0.00 3.77
2782 2798 2.393646 GGACCTCTAGATCAGCAACCT 58.606 52.381 0.00 0.00 0.00 3.50
2783 2799 2.769095 GGACCTCTAGATCAGCAACCTT 59.231 50.000 0.00 0.00 0.00 3.50
2918 2935 3.494626 GCTTTTCTCATCACACGTTCAGA 59.505 43.478 0.00 0.00 0.00 3.27
2935 2952 6.095580 ACGTTCAGATATACTCATCACTGTGT 59.904 38.462 7.79 0.00 33.82 3.72
2937 2954 7.166638 CGTTCAGATATACTCATCACTGTGTTC 59.833 40.741 7.79 0.00 31.82 3.18
3031 3050 0.767375 TGCATAAGGAGGAGGATGCC 59.233 55.000 3.46 0.00 43.26 4.40
3076 3095 2.548875 CAGATCACAGCTCCTACTTGC 58.451 52.381 0.00 0.00 0.00 4.01
3100 3119 3.068165 GTGCTTTCTTGTATATTGGGCCC 59.932 47.826 17.59 17.59 0.00 5.80
3111 3130 1.284111 ATTGGGCCCTCTGATGCTGA 61.284 55.000 25.70 0.00 0.00 4.26
3114 3133 1.530771 GGCCCTCTGATGCTGATGT 59.469 57.895 0.00 0.00 0.00 3.06
3120 3139 2.431419 CCTCTGATGCTGATGTCTCACT 59.569 50.000 0.00 0.00 0.00 3.41
3122 3141 4.099113 CCTCTGATGCTGATGTCTCACTAA 59.901 45.833 0.00 0.00 0.00 2.24
3159 3178 2.568956 AGATTAGAGCTTGTGCCTGTCA 59.431 45.455 0.00 0.00 40.80 3.58
3191 3210 1.065199 GGAGATTGACCCTGCACATGA 60.065 52.381 0.00 0.00 0.00 3.07
3197 3216 1.355381 TGACCCTGCACATGATTTCCT 59.645 47.619 0.00 0.00 0.00 3.36
3200 3219 2.827921 ACCCTGCACATGATTTCCTTTC 59.172 45.455 0.00 0.00 0.00 2.62
3217 3236 8.752005 TTTCCTTTCTGAATATCCCTGTATTG 57.248 34.615 0.00 0.00 0.00 1.90
3338 3357 6.330278 GGTTTCTTTTGGTATGCAGTTATCC 58.670 40.000 0.00 0.00 0.00 2.59
3596 3616 4.202535 ACCAGGTCACTTAAAACCCCTAAG 60.203 45.833 0.00 0.00 36.11 2.18
3599 3619 4.912133 AGGTCACTTAAAACCCCTAAGAGT 59.088 41.667 0.00 0.00 36.11 3.24
3613 3633 4.020128 CCCTAAGAGTAACTCCAACAGCTT 60.020 45.833 0.00 0.00 0.00 3.74
3635 3656 7.604545 AGCTTTCGCCCTATCTCTAAAATAATC 59.395 37.037 0.00 0.00 36.60 1.75
3673 3694 1.408969 GCAAAAGACCCTCCCAACAA 58.591 50.000 0.00 0.00 0.00 2.83
3761 3782 6.465948 TGTATCTTTTTGACGGGCTAGTAAA 58.534 36.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 187 3.419759 GCCGTGCCGTGTACAAGG 61.420 66.667 22.02 22.02 39.38 3.61
227 237 2.461110 CGGCCAGTATGTTGTCCGC 61.461 63.158 2.24 0.00 0.00 5.54
228 238 1.813753 CCGGCCAGTATGTTGTCCG 60.814 63.158 2.24 0.00 34.31 4.79
229 239 1.024579 CACCGGCCAGTATGTTGTCC 61.025 60.000 0.00 0.00 0.00 4.02
230 240 0.321298 ACACCGGCCAGTATGTTGTC 60.321 55.000 0.00 0.00 0.00 3.18
231 241 0.109723 AACACCGGCCAGTATGTTGT 59.890 50.000 0.00 0.00 34.08 3.32
232 242 0.521291 CAACACCGGCCAGTATGTTG 59.479 55.000 16.13 16.13 44.13 3.33
233 243 0.608035 CCAACACCGGCCAGTATGTT 60.608 55.000 0.00 0.00 35.69 2.71
234 244 1.002624 CCAACACCGGCCAGTATGT 60.003 57.895 0.00 0.00 0.00 2.29
235 245 1.024579 GTCCAACACCGGCCAGTATG 61.025 60.000 0.00 0.00 0.00 2.39
236 246 1.298667 GTCCAACACCGGCCAGTAT 59.701 57.895 0.00 0.00 0.00 2.12
237 247 2.107041 CTGTCCAACACCGGCCAGTA 62.107 60.000 0.00 0.00 0.00 2.74
238 248 3.476031 CTGTCCAACACCGGCCAGT 62.476 63.158 0.00 0.00 0.00 4.00
239 249 2.669569 CTGTCCAACACCGGCCAG 60.670 66.667 0.00 0.00 0.00 4.85
240 250 3.469863 GACTGTCCAACACCGGCCA 62.470 63.158 0.00 0.00 0.00 5.36
241 251 2.668550 GACTGTCCAACACCGGCC 60.669 66.667 0.00 0.00 0.00 6.13
275 285 2.203252 CCATGACCATGAGCCGGG 60.203 66.667 11.28 0.00 41.20 5.73
348 358 3.818773 AGTGTAATTTCCCCTTGTTGTCG 59.181 43.478 0.00 0.00 0.00 4.35
354 364 3.694566 GGCTGTAGTGTAATTTCCCCTTG 59.305 47.826 0.00 0.00 0.00 3.61
359 369 3.858247 AGACGGCTGTAGTGTAATTTCC 58.142 45.455 0.00 0.00 0.00 3.13
369 379 2.088423 AGAACAGAGAGACGGCTGTAG 58.912 52.381 0.00 0.00 44.06 2.74
550 560 2.103143 CGCTGCACGGTAGAGGAG 59.897 66.667 0.00 0.00 38.44 3.69
578 588 0.608640 CCCGGGATACTGTAGCATCC 59.391 60.000 18.48 2.64 43.49 3.51
579 589 1.272769 GTCCCGGGATACTGTAGCATC 59.727 57.143 29.73 4.80 43.49 3.91
580 590 1.339097 GTCCCGGGATACTGTAGCAT 58.661 55.000 29.73 0.00 43.49 3.79
581 591 0.032912 TGTCCCGGGATACTGTAGCA 60.033 55.000 29.73 14.71 43.49 3.49
582 592 0.674534 CTGTCCCGGGATACTGTAGC 59.325 60.000 29.73 11.84 43.49 3.58
583 593 1.681793 CACTGTCCCGGGATACTGTAG 59.318 57.143 29.73 19.09 43.49 2.74
584 594 1.006281 ACACTGTCCCGGGATACTGTA 59.994 52.381 29.73 8.33 43.49 2.74
585 595 0.252103 ACACTGTCCCGGGATACTGT 60.252 55.000 29.73 24.75 43.49 3.55
586 596 1.771565 TACACTGTCCCGGGATACTG 58.228 55.000 29.73 24.07 45.15 2.74
587 597 2.537633 TTACACTGTCCCGGGATACT 57.462 50.000 29.73 10.38 0.00 2.12
588 598 3.832615 ATTTACACTGTCCCGGGATAC 57.167 47.619 29.73 16.72 0.00 2.24
589 599 4.288398 TGTATTTACACTGTCCCGGGATA 58.712 43.478 29.73 24.56 0.00 2.59
590 600 3.109151 TGTATTTACACTGTCCCGGGAT 58.891 45.455 29.73 13.34 0.00 3.85
591 601 2.498481 CTGTATTTACACTGTCCCGGGA 59.502 50.000 22.63 22.63 31.93 5.14
592 602 2.498481 TCTGTATTTACACTGTCCCGGG 59.502 50.000 16.85 16.85 31.93 5.73
593 603 3.880047 TCTGTATTTACACTGTCCCGG 57.120 47.619 0.00 0.00 31.93 5.73
594 604 4.181578 CCTTCTGTATTTACACTGTCCCG 58.818 47.826 0.00 0.00 31.93 5.14
595 605 3.939592 GCCTTCTGTATTTACACTGTCCC 59.060 47.826 0.00 0.00 31.93 4.46
596 606 4.392138 GTGCCTTCTGTATTTACACTGTCC 59.608 45.833 0.00 0.00 31.93 4.02
597 607 4.091509 CGTGCCTTCTGTATTTACACTGTC 59.908 45.833 0.00 0.00 31.93 3.51
598 608 3.994392 CGTGCCTTCTGTATTTACACTGT 59.006 43.478 0.00 0.00 31.93 3.55
599 609 3.370978 CCGTGCCTTCTGTATTTACACTG 59.629 47.826 0.00 0.00 31.93 3.66
600 610 3.596214 CCGTGCCTTCTGTATTTACACT 58.404 45.455 0.00 0.00 31.93 3.55
601 611 2.095372 GCCGTGCCTTCTGTATTTACAC 59.905 50.000 0.00 0.00 31.93 2.90
602 612 2.289756 TGCCGTGCCTTCTGTATTTACA 60.290 45.455 0.00 0.00 34.56 2.41
603 613 2.351726 CTGCCGTGCCTTCTGTATTTAC 59.648 50.000 0.00 0.00 0.00 2.01
604 614 2.627945 CTGCCGTGCCTTCTGTATTTA 58.372 47.619 0.00 0.00 0.00 1.40
605 615 1.453155 CTGCCGTGCCTTCTGTATTT 58.547 50.000 0.00 0.00 0.00 1.40
606 616 0.392998 CCTGCCGTGCCTTCTGTATT 60.393 55.000 0.00 0.00 0.00 1.89
607 617 1.221840 CCTGCCGTGCCTTCTGTAT 59.778 57.895 0.00 0.00 0.00 2.29
608 618 1.264749 ATCCTGCCGTGCCTTCTGTA 61.265 55.000 0.00 0.00 0.00 2.74
609 619 2.596851 ATCCTGCCGTGCCTTCTGT 61.597 57.895 0.00 0.00 0.00 3.41
610 620 2.110967 CATCCTGCCGTGCCTTCTG 61.111 63.158 0.00 0.00 0.00 3.02
611 621 2.270205 CATCCTGCCGTGCCTTCT 59.730 61.111 0.00 0.00 0.00 2.85
612 622 2.109126 GTCATCCTGCCGTGCCTTC 61.109 63.158 0.00 0.00 0.00 3.46
613 623 2.045926 GTCATCCTGCCGTGCCTT 60.046 61.111 0.00 0.00 0.00 4.35
614 624 3.005539 AGTCATCCTGCCGTGCCT 61.006 61.111 0.00 0.00 0.00 4.75
615 625 2.238847 TACAGTCATCCTGCCGTGCC 62.239 60.000 0.00 0.00 45.68 5.01
616 626 0.807667 CTACAGTCATCCTGCCGTGC 60.808 60.000 0.00 0.00 45.68 5.34
617 627 0.807667 GCTACAGTCATCCTGCCGTG 60.808 60.000 0.00 0.00 45.68 4.94
618 628 1.517832 GCTACAGTCATCCTGCCGT 59.482 57.895 0.00 0.00 45.68 5.68
619 629 1.227380 GGCTACAGTCATCCTGCCG 60.227 63.158 0.00 0.00 45.68 5.69
620 630 1.227380 CGGCTACAGTCATCCTGCC 60.227 63.158 0.00 0.00 45.68 4.85
621 631 1.227380 CCGGCTACAGTCATCCTGC 60.227 63.158 0.00 0.00 45.68 4.85
623 633 1.794714 ATTCCGGCTACAGTCATCCT 58.205 50.000 0.00 0.00 0.00 3.24
624 634 2.622064 AATTCCGGCTACAGTCATCC 57.378 50.000 0.00 0.00 0.00 3.51
625 635 4.051922 CAGTAATTCCGGCTACAGTCATC 58.948 47.826 0.00 0.00 0.00 2.92
626 636 3.451178 ACAGTAATTCCGGCTACAGTCAT 59.549 43.478 0.00 0.00 0.00 3.06
627 637 2.829720 ACAGTAATTCCGGCTACAGTCA 59.170 45.455 0.00 0.00 0.00 3.41
628 638 3.521947 ACAGTAATTCCGGCTACAGTC 57.478 47.619 0.00 0.00 0.00 3.51
629 639 3.975168 AACAGTAATTCCGGCTACAGT 57.025 42.857 0.00 0.00 0.00 3.55
630 640 3.181510 GCAAACAGTAATTCCGGCTACAG 60.182 47.826 0.00 0.00 0.00 2.74
631 641 2.745281 GCAAACAGTAATTCCGGCTACA 59.255 45.455 0.00 0.00 0.00 2.74
632 642 2.745281 TGCAAACAGTAATTCCGGCTAC 59.255 45.455 0.00 0.00 0.00 3.58
633 643 3.060736 TGCAAACAGTAATTCCGGCTA 57.939 42.857 0.00 0.00 0.00 3.93
634 644 1.904287 TGCAAACAGTAATTCCGGCT 58.096 45.000 0.00 0.00 0.00 5.52
635 645 2.939460 ATGCAAACAGTAATTCCGGC 57.061 45.000 0.00 0.00 0.00 6.13
636 646 4.394920 ACAGTATGCAAACAGTAATTCCGG 59.605 41.667 0.00 0.00 42.53 5.14
637 647 5.545658 ACAGTATGCAAACAGTAATTCCG 57.454 39.130 0.00 0.00 42.53 4.30
638 648 6.487103 GCTACAGTATGCAAACAGTAATTCC 58.513 40.000 0.00 0.00 42.53 3.01
639 649 6.185399 CGCTACAGTATGCAAACAGTAATTC 58.815 40.000 0.00 0.00 42.53 2.17
640 650 5.064707 CCGCTACAGTATGCAAACAGTAATT 59.935 40.000 0.00 0.00 42.53 1.40
641 651 4.570772 CCGCTACAGTATGCAAACAGTAAT 59.429 41.667 0.00 0.00 42.53 1.89
642 652 3.930229 CCGCTACAGTATGCAAACAGTAA 59.070 43.478 0.00 0.00 42.53 2.24
643 653 3.193903 TCCGCTACAGTATGCAAACAGTA 59.806 43.478 0.00 0.00 42.53 2.74
644 654 2.028476 TCCGCTACAGTATGCAAACAGT 60.028 45.455 0.00 0.00 42.53 3.55
645 655 2.616960 TCCGCTACAGTATGCAAACAG 58.383 47.619 0.00 0.00 42.53 3.16
646 656 2.753055 TCCGCTACAGTATGCAAACA 57.247 45.000 0.00 0.00 42.53 2.83
647 657 5.924475 ATATTCCGCTACAGTATGCAAAC 57.076 39.130 0.00 0.00 42.53 2.93
648 658 6.645003 CAGTATATTCCGCTACAGTATGCAAA 59.355 38.462 0.00 0.00 42.53 3.68
649 659 6.156519 CAGTATATTCCGCTACAGTATGCAA 58.843 40.000 0.00 0.00 42.53 4.08
650 660 5.243060 ACAGTATATTCCGCTACAGTATGCA 59.757 40.000 0.00 0.00 42.53 3.96
651 661 5.710984 ACAGTATATTCCGCTACAGTATGC 58.289 41.667 0.00 0.00 42.53 3.14
652 662 7.060748 CGAAACAGTATATTCCGCTACAGTATG 59.939 40.741 0.00 0.00 46.00 2.39
653 663 7.082602 CGAAACAGTATATTCCGCTACAGTAT 58.917 38.462 0.00 0.00 0.00 2.12
654 664 6.432936 CGAAACAGTATATTCCGCTACAGTA 58.567 40.000 0.00 0.00 0.00 2.74
655 665 5.279384 CGAAACAGTATATTCCGCTACAGT 58.721 41.667 0.00 0.00 0.00 3.55
656 666 4.680110 CCGAAACAGTATATTCCGCTACAG 59.320 45.833 0.00 0.00 0.00 2.74
657 667 4.098349 ACCGAAACAGTATATTCCGCTACA 59.902 41.667 0.00 0.00 0.00 2.74
658 668 4.614946 ACCGAAACAGTATATTCCGCTAC 58.385 43.478 0.00 0.00 0.00 3.58
659 669 4.924305 ACCGAAACAGTATATTCCGCTA 57.076 40.909 0.00 0.00 0.00 4.26
660 670 3.814005 ACCGAAACAGTATATTCCGCT 57.186 42.857 0.00 0.00 0.00 5.52
661 671 4.569564 AGAAACCGAAACAGTATATTCCGC 59.430 41.667 0.00 0.00 0.00 5.54
662 672 5.579511 ACAGAAACCGAAACAGTATATTCCG 59.420 40.000 0.00 0.00 0.00 4.30
663 673 6.980051 ACAGAAACCGAAACAGTATATTCC 57.020 37.500 0.00 0.00 0.00 3.01
664 674 7.277098 TGCTACAGAAACCGAAACAGTATATTC 59.723 37.037 0.00 0.00 0.00 1.75
665 675 7.101054 TGCTACAGAAACCGAAACAGTATATT 58.899 34.615 0.00 0.00 0.00 1.28
666 676 6.636705 TGCTACAGAAACCGAAACAGTATAT 58.363 36.000 0.00 0.00 0.00 0.86
667 677 6.028146 TGCTACAGAAACCGAAACAGTATA 57.972 37.500 0.00 0.00 0.00 1.47
668 678 4.890088 TGCTACAGAAACCGAAACAGTAT 58.110 39.130 0.00 0.00 0.00 2.12
669 679 4.325028 TGCTACAGAAACCGAAACAGTA 57.675 40.909 0.00 0.00 0.00 2.74
670 680 3.188159 TGCTACAGAAACCGAAACAGT 57.812 42.857 0.00 0.00 0.00 3.55
671 681 4.749245 AATGCTACAGAAACCGAAACAG 57.251 40.909 0.00 0.00 0.00 3.16
672 682 4.791411 GCAAATGCTACAGAAACCGAAACA 60.791 41.667 0.00 0.00 38.21 2.83
673 683 3.668656 GCAAATGCTACAGAAACCGAAAC 59.331 43.478 0.00 0.00 38.21 2.78
674 684 3.316588 TGCAAATGCTACAGAAACCGAAA 59.683 39.130 6.97 0.00 42.66 3.46
675 685 2.881513 TGCAAATGCTACAGAAACCGAA 59.118 40.909 6.97 0.00 42.66 4.30
676 686 2.225491 GTGCAAATGCTACAGAAACCGA 59.775 45.455 6.97 0.00 42.66 4.69
677 687 2.226437 AGTGCAAATGCTACAGAAACCG 59.774 45.455 6.97 0.00 42.66 4.44
678 688 3.004734 ACAGTGCAAATGCTACAGAAACC 59.995 43.478 6.97 0.00 42.66 3.27
679 689 4.228912 ACAGTGCAAATGCTACAGAAAC 57.771 40.909 6.97 0.00 42.66 2.78
680 690 4.916983 AACAGTGCAAATGCTACAGAAA 57.083 36.364 6.97 0.00 42.66 2.52
681 691 4.609947 CAAACAGTGCAAATGCTACAGAA 58.390 39.130 6.97 0.00 42.66 3.02
682 692 4.227512 CAAACAGTGCAAATGCTACAGA 57.772 40.909 6.97 0.00 42.66 3.41
695 705 1.670295 TGCTACAGTGTGCAAACAGTG 59.330 47.619 14.88 12.21 44.32 3.66
696 706 2.036958 TGCTACAGTGTGCAAACAGT 57.963 45.000 10.29 10.25 36.15 3.55
701 711 3.750371 ACCTATTTGCTACAGTGTGCAA 58.250 40.909 21.48 21.48 45.83 4.08
702 712 3.007940 AGACCTATTTGCTACAGTGTGCA 59.992 43.478 5.88 10.93 37.42 4.57
703 713 3.372206 CAGACCTATTTGCTACAGTGTGC 59.628 47.826 5.88 8.32 0.00 4.57
704 714 4.820897 TCAGACCTATTTGCTACAGTGTG 58.179 43.478 5.88 0.00 0.00 3.82
705 715 4.621747 GCTCAGACCTATTTGCTACAGTGT 60.622 45.833 0.00 0.00 0.00 3.55
706 716 3.868077 GCTCAGACCTATTTGCTACAGTG 59.132 47.826 0.00 0.00 0.00 3.66
707 717 3.118592 GGCTCAGACCTATTTGCTACAGT 60.119 47.826 0.00 0.00 0.00 3.55
708 718 3.118629 TGGCTCAGACCTATTTGCTACAG 60.119 47.826 0.00 0.00 0.00 2.74
709 719 2.837591 TGGCTCAGACCTATTTGCTACA 59.162 45.455 0.00 0.00 0.00 2.74
710 720 3.543680 TGGCTCAGACCTATTTGCTAC 57.456 47.619 0.00 0.00 0.00 3.58
711 721 4.778213 AATGGCTCAGACCTATTTGCTA 57.222 40.909 0.00 0.00 0.00 3.49
712 722 3.659183 AATGGCTCAGACCTATTTGCT 57.341 42.857 0.00 0.00 0.00 3.91
713 723 6.712547 AGTATAAATGGCTCAGACCTATTTGC 59.287 38.462 0.00 0.00 0.00 3.68
714 724 7.308229 GCAGTATAAATGGCTCAGACCTATTTG 60.308 40.741 0.00 0.00 0.00 2.32
715 725 6.712547 GCAGTATAAATGGCTCAGACCTATTT 59.287 38.462 0.00 0.00 0.00 1.40
716 726 6.183361 TGCAGTATAAATGGCTCAGACCTATT 60.183 38.462 0.00 0.00 0.00 1.73
717 727 5.307976 TGCAGTATAAATGGCTCAGACCTAT 59.692 40.000 0.00 0.00 0.00 2.57
718 728 4.653801 TGCAGTATAAATGGCTCAGACCTA 59.346 41.667 0.00 0.00 0.00 3.08
719 729 3.455910 TGCAGTATAAATGGCTCAGACCT 59.544 43.478 0.00 0.00 0.00 3.85
720 730 3.808728 TGCAGTATAAATGGCTCAGACC 58.191 45.455 0.00 0.00 0.00 3.85
721 731 5.303971 AGATGCAGTATAAATGGCTCAGAC 58.696 41.667 0.00 0.00 0.00 3.51
722 732 5.557576 AGATGCAGTATAAATGGCTCAGA 57.442 39.130 0.00 0.00 0.00 3.27
723 733 6.707608 TGTTAGATGCAGTATAAATGGCTCAG 59.292 38.462 0.00 0.00 0.00 3.35
724 734 6.591001 TGTTAGATGCAGTATAAATGGCTCA 58.409 36.000 0.00 0.00 0.00 4.26
725 735 6.348050 GCTGTTAGATGCAGTATAAATGGCTC 60.348 42.308 0.00 0.00 36.42 4.70
726 736 5.471456 GCTGTTAGATGCAGTATAAATGGCT 59.529 40.000 0.00 0.00 36.42 4.75
727 737 5.471456 AGCTGTTAGATGCAGTATAAATGGC 59.529 40.000 0.00 0.00 36.42 4.40
728 738 6.707608 TCAGCTGTTAGATGCAGTATAAATGG 59.292 38.462 14.67 0.00 36.42 3.16
729 739 7.719778 TCAGCTGTTAGATGCAGTATAAATG 57.280 36.000 14.67 0.00 36.42 2.32
730 740 9.650539 CTATCAGCTGTTAGATGCAGTATAAAT 57.349 33.333 22.27 2.46 36.42 1.40
731 741 8.860088 TCTATCAGCTGTTAGATGCAGTATAAA 58.140 33.333 24.40 4.47 36.42 1.40
732 742 8.409358 TCTATCAGCTGTTAGATGCAGTATAA 57.591 34.615 24.40 4.89 36.42 0.98
733 743 8.465201 CATCTATCAGCTGTTAGATGCAGTATA 58.535 37.037 37.75 18.17 42.76 1.47
734 744 6.907853 TCTATCAGCTGTTAGATGCAGTAT 57.092 37.500 24.40 6.00 36.42 2.12
735 745 6.685657 CATCTATCAGCTGTTAGATGCAGTA 58.314 40.000 37.75 19.22 42.76 2.74
736 746 5.539979 CATCTATCAGCTGTTAGATGCAGT 58.460 41.667 37.75 22.04 42.76 4.40
740 750 4.252073 GGGCATCTATCAGCTGTTAGATG 58.748 47.826 40.34 40.34 46.95 2.90
741 751 3.906218 TGGGCATCTATCAGCTGTTAGAT 59.094 43.478 29.60 29.60 37.48 1.98
742 752 3.308401 TGGGCATCTATCAGCTGTTAGA 58.692 45.455 28.26 28.26 32.71 2.10
743 753 3.758755 TGGGCATCTATCAGCTGTTAG 57.241 47.619 21.18 21.18 0.00 2.34
744 754 4.454678 CTTTGGGCATCTATCAGCTGTTA 58.545 43.478 14.67 9.04 0.00 2.41
745 755 3.285484 CTTTGGGCATCTATCAGCTGTT 58.715 45.455 14.67 8.22 0.00 3.16
746 756 2.422519 CCTTTGGGCATCTATCAGCTGT 60.423 50.000 14.67 3.75 0.00 4.40
747 757 2.228059 CCTTTGGGCATCTATCAGCTG 58.772 52.381 7.63 7.63 0.00 4.24
748 758 2.653234 CCTTTGGGCATCTATCAGCT 57.347 50.000 0.00 0.00 0.00 4.24
761 771 1.679032 GCTACAGTACCCTGCCTTTGG 60.679 57.143 0.00 0.00 42.81 3.28
762 772 1.739067 GCTACAGTACCCTGCCTTTG 58.261 55.000 0.00 0.00 42.81 2.77
763 773 0.249398 CGCTACAGTACCCTGCCTTT 59.751 55.000 0.00 0.00 42.81 3.11
764 774 0.903454 ACGCTACAGTACCCTGCCTT 60.903 55.000 0.00 0.00 42.81 4.35
765 775 1.305046 ACGCTACAGTACCCTGCCT 60.305 57.895 0.00 0.00 42.81 4.75
766 776 1.141234 GACGCTACAGTACCCTGCC 59.859 63.158 0.00 0.00 42.81 4.85
767 777 1.141234 GGACGCTACAGTACCCTGC 59.859 63.158 0.00 0.00 42.81 4.85
768 778 0.683504 AGGGACGCTACAGTACCCTG 60.684 60.000 5.81 0.00 46.42 4.45
769 779 0.683504 CAGGGACGCTACAGTACCCT 60.684 60.000 0.00 0.00 46.42 4.34
770 780 1.814527 CAGGGACGCTACAGTACCC 59.185 63.158 0.00 0.00 46.42 3.69
771 781 1.141234 GCAGGGACGCTACAGTACC 59.859 63.158 0.00 0.00 45.59 3.34
772 782 1.141234 GGCAGGGACGCTACAGTAC 59.859 63.158 0.00 0.00 0.00 2.73
773 783 2.412323 CGGCAGGGACGCTACAGTA 61.412 63.158 0.00 0.00 0.00 2.74
774 784 3.760035 CGGCAGGGACGCTACAGT 61.760 66.667 0.00 0.00 0.00 3.55
775 785 3.760035 ACGGCAGGGACGCTACAG 61.760 66.667 0.00 0.00 37.73 2.74
776 786 4.063967 CACGGCAGGGACGCTACA 62.064 66.667 0.00 0.00 37.73 2.74
782 792 4.008933 AGTGAGCACGGCAGGGAC 62.009 66.667 0.00 0.00 36.20 4.46
783 793 4.007644 CAGTGAGCACGGCAGGGA 62.008 66.667 0.00 0.00 36.20 4.20
793 803 1.153745 CCTCTACCGTGCAGTGAGC 60.154 63.158 0.00 0.00 45.96 4.26
794 804 0.453793 CTCCTCTACCGTGCAGTGAG 59.546 60.000 0.00 0.00 0.00 3.51
795 805 1.595993 GCTCCTCTACCGTGCAGTGA 61.596 60.000 0.00 0.00 0.00 3.41
796 806 1.153745 GCTCCTCTACCGTGCAGTG 60.154 63.158 0.00 0.00 0.00 3.66
797 807 2.352032 GGCTCCTCTACCGTGCAGT 61.352 63.158 0.00 0.00 0.00 4.40
798 808 2.496817 GGCTCCTCTACCGTGCAG 59.503 66.667 0.00 0.00 0.00 4.41
799 809 3.449227 CGGCTCCTCTACCGTGCA 61.449 66.667 0.00 0.00 44.46 4.57
804 814 2.783288 CGGAACCGGCTCCTCTACC 61.783 68.421 21.37 3.43 32.82 3.18
805 815 2.806237 CGGAACCGGCTCCTCTAC 59.194 66.667 21.37 0.00 32.82 2.59
815 825 3.411351 CGTCAAGTGCCGGAACCG 61.411 66.667 9.68 0.93 39.44 4.44
852 862 3.670625 TGTAGTTGTTGGGGAAATCGAG 58.329 45.455 0.00 0.00 0.00 4.04
1194 1204 9.807921 AAAGAAAAAGATTCAGGAACTACCATA 57.192 29.630 0.00 0.00 42.04 2.74
1287 1297 4.912586 TGATGGGAACGAAATCTTGGTTA 58.087 39.130 0.00 0.00 31.50 2.85
1341 1351 2.543777 TGAGAAACTCAAACGAGGGG 57.456 50.000 0.00 0.00 37.57 4.79
1389 1399 1.597027 ACGGCCAGTTCCAAGAACG 60.597 57.895 2.24 0.00 0.00 3.95
1396 1406 0.733150 GATTAAGCACGGCCAGTTCC 59.267 55.000 2.24 0.00 0.00 3.62
1425 1435 5.183140 GCAAACAGCAATTAGAGGGAAAGTA 59.817 40.000 0.00 0.00 44.79 2.24
1452 1462 3.512033 ACTAGCCGATCAGTGAAAGAC 57.488 47.619 0.00 0.00 0.00 3.01
1499 1509 2.688364 TCGATTCCATGTCGATCTCG 57.312 50.000 3.03 0.00 42.57 4.04
1517 1527 2.087009 CGCCGTTGACGACCTCTTC 61.087 63.158 4.91 0.00 43.02 2.87
1568 1578 1.153289 CTCGAGGATTGCCCACCAG 60.153 63.158 3.91 0.00 37.41 4.00
1644 1654 2.409378 GGAAATTGTTGTTGCTGATGCG 59.591 45.455 0.00 0.00 43.34 4.73
1715 1725 1.021390 GCCTGGTGTTGTCTGGATCG 61.021 60.000 0.00 0.00 0.00 3.69
1732 1742 2.205074 CACGGTGACTCATCTTATGCC 58.795 52.381 0.74 0.00 0.00 4.40
1741 1751 1.202348 CAGCATCTACACGGTGACTCA 59.798 52.381 16.29 0.00 32.37 3.41
1788 1798 2.170397 TGAAGCTGATTATGGAGCGGAA 59.830 45.455 0.00 0.00 40.34 4.30
1821 1831 7.050377 TCATCTGGATCAAAGACCTCAAATAC 58.950 38.462 0.00 0.00 0.00 1.89
1831 1841 4.937620 CGGTTTCTTCATCTGGATCAAAGA 59.062 41.667 0.00 0.00 0.00 2.52
1851 1861 1.759445 AGACATTAGATGCTCTGCGGT 59.241 47.619 0.00 0.00 0.00 5.68
1880 1890 1.454663 GAGGCCTCCAATTGAGCCC 60.455 63.158 23.19 11.75 38.95 5.19
1920 1930 2.105477 CTGGGTTGCAGATATAGCACCT 59.895 50.000 14.76 0.00 42.54 4.00
1924 1934 2.938956 ACCTGGGTTGCAGATATAGC 57.061 50.000 0.00 0.00 0.00 2.97
1928 1938 4.042311 TCTTTTGTACCTGGGTTGCAGATA 59.958 41.667 0.00 0.00 0.00 1.98
1931 1941 2.582052 TCTTTTGTACCTGGGTTGCAG 58.418 47.619 0.00 0.00 0.00 4.41
1937 1947 2.161609 GCGTGATTCTTTTGTACCTGGG 59.838 50.000 0.00 0.00 0.00 4.45
1986 1996 2.092753 CCAGCATGTACAGTCCCAAGAT 60.093 50.000 0.33 0.00 0.00 2.40
1997 2007 0.179073 ACTCATCGCCCAGCATGTAC 60.179 55.000 0.00 0.00 0.00 2.90
2009 2019 5.074115 AGATAGAGGACCCTAAACTCATCG 58.926 45.833 0.00 0.00 33.76 3.84
2033 2043 2.191400 TCACCCTCCTCATCTTCCTTG 58.809 52.381 0.00 0.00 0.00 3.61
2063 2073 1.337167 TGATGCACTGACAGGACGAAG 60.337 52.381 7.51 0.00 0.00 3.79
2086 2096 6.966534 ACCCAATGGATTTATTGCTAAGAG 57.033 37.500 0.00 0.00 36.86 2.85
2137 2147 1.004161 TCGGTCCATCAATTTCTGGCA 59.996 47.619 0.00 0.00 32.30 4.92
2140 2150 4.437930 GCTTCTTCGGTCCATCAATTTCTG 60.438 45.833 0.00 0.00 0.00 3.02
2146 2156 1.339055 CCAGCTTCTTCGGTCCATCAA 60.339 52.381 0.00 0.00 0.00 2.57
2147 2157 0.250234 CCAGCTTCTTCGGTCCATCA 59.750 55.000 0.00 0.00 0.00 3.07
2148 2158 0.462759 CCCAGCTTCTTCGGTCCATC 60.463 60.000 0.00 0.00 0.00 3.51
2155 2165 2.846371 CTGAACCCCAGCTTCTTCG 58.154 57.895 0.00 0.00 35.89 3.79
2166 2176 0.957888 GAACTCTGCAGGCTGAACCC 60.958 60.000 20.86 0.00 40.58 4.11
2222 2232 0.963355 GCTCCAACGGTGCCCAATAA 60.963 55.000 0.00 0.00 36.35 1.40
2235 2245 4.641645 CCGTGGCCACAGCTCCAA 62.642 66.667 34.16 0.00 39.73 3.53
2250 2260 7.371936 TGGTAATCAAAAACTGTAATTTCCCG 58.628 34.615 0.00 0.00 0.00 5.14
2251 2261 8.364894 ACTGGTAATCAAAAACTGTAATTTCCC 58.635 33.333 0.00 0.00 0.00 3.97
2252 2262 9.406828 GACTGGTAATCAAAAACTGTAATTTCC 57.593 33.333 0.00 0.00 0.00 3.13
2254 2264 9.965824 CAGACTGGTAATCAAAAACTGTAATTT 57.034 29.630 0.00 0.00 0.00 1.82
2255 2265 9.349713 TCAGACTGGTAATCAAAAACTGTAATT 57.650 29.630 1.81 0.00 0.00 1.40
2272 2282 3.209410 CAGTGAAAAAGCTCAGACTGGT 58.791 45.455 1.81 0.00 0.00 4.00
2322 2332 2.136298 TTGTTGGTGTTGCTCTTGGA 57.864 45.000 0.00 0.00 0.00 3.53
2323 2333 3.609175 CGTATTGTTGGTGTTGCTCTTGG 60.609 47.826 0.00 0.00 0.00 3.61
2334 2344 4.906618 AGAACCTTCATCGTATTGTTGGT 58.093 39.130 0.00 0.00 0.00 3.67
2335 2345 5.411361 TCAAGAACCTTCATCGTATTGTTGG 59.589 40.000 0.00 0.00 0.00 3.77
2338 2348 5.794894 ACTCAAGAACCTTCATCGTATTGT 58.205 37.500 0.00 0.00 0.00 2.71
2342 2352 4.282449 TCCAACTCAAGAACCTTCATCGTA 59.718 41.667 0.00 0.00 0.00 3.43
2357 2367 1.300620 CAACTCGCCGTCCAACTCA 60.301 57.895 0.00 0.00 0.00 3.41
2622 2638 3.522731 AGGCGCTAGCTCTCCGTG 61.523 66.667 13.93 0.00 44.37 4.94
2773 2789 4.040829 TGAATCTCTCTGAAAGGTTGCTGA 59.959 41.667 0.00 0.00 0.00 4.26
2774 2790 4.321718 TGAATCTCTCTGAAAGGTTGCTG 58.678 43.478 0.00 0.00 0.00 4.41
2775 2791 4.577875 CTGAATCTCTCTGAAAGGTTGCT 58.422 43.478 0.00 0.00 0.00 3.91
2776 2792 3.126686 GCTGAATCTCTCTGAAAGGTTGC 59.873 47.826 0.00 0.00 0.00 4.17
2777 2793 3.688673 GGCTGAATCTCTCTGAAAGGTTG 59.311 47.826 0.00 0.00 0.00 3.77
2778 2794 3.586618 AGGCTGAATCTCTCTGAAAGGTT 59.413 43.478 0.00 0.00 0.00 3.50
2779 2795 3.055240 CAGGCTGAATCTCTCTGAAAGGT 60.055 47.826 9.42 0.00 0.00 3.50
2780 2796 3.533547 CAGGCTGAATCTCTCTGAAAGG 58.466 50.000 9.42 0.00 0.00 3.11
2781 2797 2.937799 GCAGGCTGAATCTCTCTGAAAG 59.062 50.000 20.86 0.00 0.00 2.62
2782 2798 2.570752 AGCAGGCTGAATCTCTCTGAAA 59.429 45.455 20.86 0.00 0.00 2.69
2783 2799 2.093606 CAGCAGGCTGAATCTCTCTGAA 60.094 50.000 20.86 0.00 46.30 3.02
2945 2962 4.616835 GCAAGCAAATCACCTAAGAACAGG 60.617 45.833 0.00 0.00 41.87 4.00
2946 2963 4.022935 TGCAAGCAAATCACCTAAGAACAG 60.023 41.667 0.00 0.00 0.00 3.16
2948 2965 4.229876 GTGCAAGCAAATCACCTAAGAAC 58.770 43.478 0.00 0.00 0.00 3.01
2950 2967 2.819608 GGTGCAAGCAAATCACCTAAGA 59.180 45.455 0.00 0.00 45.04 2.10
2951 2968 3.221964 GGTGCAAGCAAATCACCTAAG 57.778 47.619 0.00 0.00 45.04 2.18
3031 3050 0.588252 CCTGAAGCAGTGGTGAAACG 59.412 55.000 0.00 0.00 38.12 3.60
3076 3095 3.243068 GCCCAATATACAAGAAAGCACGG 60.243 47.826 0.00 0.00 0.00 4.94
3100 3119 3.804786 AGTGAGACATCAGCATCAGAG 57.195 47.619 0.00 0.00 35.66 3.35
3111 3130 7.046652 CAGATCTTGGAACATTAGTGAGACAT 58.953 38.462 0.00 0.00 39.30 3.06
3114 3133 6.611613 ACAGATCTTGGAACATTAGTGAGA 57.388 37.500 0.00 0.00 39.30 3.27
3122 3141 7.289782 AGCTCTAATCTACAGATCTTGGAACAT 59.710 37.037 0.00 0.00 32.96 2.71
3176 3195 2.170166 GGAAATCATGTGCAGGGTCAA 58.830 47.619 0.00 0.00 0.00 3.18
3191 3210 9.359653 CAATACAGGGATATTCAGAAAGGAAAT 57.640 33.333 0.00 0.00 0.00 2.17
3200 3219 8.394971 TGCAATTACAATACAGGGATATTCAG 57.605 34.615 0.00 0.00 0.00 3.02
3217 3236 5.050634 TGTCAACACTAGACGTTGCAATTAC 60.051 40.000 18.84 13.83 42.78 1.89
3338 3357 2.164219 AGCAATTTCCAGCATAACACGG 59.836 45.455 0.00 0.00 0.00 4.94
3416 3435 4.591498 TGTTTAGCTCTAGAACCCAAGACA 59.409 41.667 0.00 0.00 0.00 3.41
3613 3633 6.989659 ACGATTATTTTAGAGATAGGGCGAA 58.010 36.000 0.00 0.00 0.00 4.70
3673 3694 7.754851 AAAGTTATGGACACTTTACGGAAAT 57.245 32.000 0.00 0.00 41.68 2.17
3719 3740 5.428131 AGATACAGGAAGATGAGAAAAGGCT 59.572 40.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.