Multiple sequence alignment - TraesCS4A01G013700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G013700 chr4A 100.000 6925 0 0 1 6925 7769900 7762976 0.000000e+00 12789
1 TraesCS4A01G013700 chr4D 94.929 5502 184 36 1 5452 460471184 460476640 0.000000e+00 8527
2 TraesCS4A01G013700 chr4D 88.848 807 49 19 5512 6306 460476730 460477507 0.000000e+00 953
3 TraesCS4A01G013700 chr4B 94.562 5112 191 42 879 5959 574940476 574945531 0.000000e+00 7819
4 TraesCS4A01G013700 chr4B 91.373 823 59 5 1 823 558731502 558730692 0.000000e+00 1116
5 TraesCS4A01G013700 chr4B 82.942 809 129 9 1 808 244478826 244479626 0.000000e+00 721
6 TraesCS4A01G013700 chr4B 90.235 553 22 13 6007 6541 574945690 574946228 0.000000e+00 693
7 TraesCS4A01G013700 chr7A 91.616 823 65 3 1 823 733358497 733359315 0.000000e+00 1134
8 TraesCS4A01G013700 chr7A 82.069 145 17 4 6472 6613 206939253 206939115 1.580000e-21 115
9 TraesCS4A01G013700 chr3B 87.970 798 73 7 3 781 157931502 157932295 0.000000e+00 920
10 TraesCS4A01G013700 chr1D 82.160 824 140 6 1 823 218681727 218680910 0.000000e+00 701
11 TraesCS4A01G013700 chr5D 80.387 826 151 10 1 823 191909355 191908538 9.870000e-173 617
12 TraesCS4A01G013700 chr2B 80.250 800 149 8 25 821 789615127 789614334 1.660000e-165 593
13 TraesCS4A01G013700 chr1B 79.636 825 159 8 1 823 312552882 312552065 1.000000e-162 584
14 TraesCS4A01G013700 chr7D 83.333 144 16 5 6472 6613 197879646 197879509 7.290000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G013700 chr4A 7762976 7769900 6924 True 12789 12789 100.0000 1 6925 1 chr4A.!!$R1 6924
1 TraesCS4A01G013700 chr4D 460471184 460477507 6323 False 4740 8527 91.8885 1 6306 2 chr4D.!!$F1 6305
2 TraesCS4A01G013700 chr4B 574940476 574946228 5752 False 4256 7819 92.3985 879 6541 2 chr4B.!!$F2 5662
3 TraesCS4A01G013700 chr4B 558730692 558731502 810 True 1116 1116 91.3730 1 823 1 chr4B.!!$R1 822
4 TraesCS4A01G013700 chr4B 244478826 244479626 800 False 721 721 82.9420 1 808 1 chr4B.!!$F1 807
5 TraesCS4A01G013700 chr7A 733358497 733359315 818 False 1134 1134 91.6160 1 823 1 chr7A.!!$F1 822
6 TraesCS4A01G013700 chr3B 157931502 157932295 793 False 920 920 87.9700 3 781 1 chr3B.!!$F1 778
7 TraesCS4A01G013700 chr1D 218680910 218681727 817 True 701 701 82.1600 1 823 1 chr1D.!!$R1 822
8 TraesCS4A01G013700 chr5D 191908538 191909355 817 True 617 617 80.3870 1 823 1 chr5D.!!$R1 822
9 TraesCS4A01G013700 chr2B 789614334 789615127 793 True 593 593 80.2500 25 821 1 chr2B.!!$R1 796
10 TraesCS4A01G013700 chr1B 312552065 312552882 817 True 584 584 79.6360 1 823 1 chr1B.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 731 0.253630 AGGCAAGGAACTGGGGGATA 60.254 55.000 0.00 0.00 40.86 2.59 F
1077 1128 0.320334 TTCCTGCGACGCTTGATTGA 60.320 50.000 22.08 5.51 0.00 2.57 F
2688 2769 0.181350 CAGAATGGCCTGTAGGACCC 59.819 60.000 3.32 0.00 44.80 4.46 F
3512 3594 1.756538 CCACAAGTTTTGCTCCCTGTT 59.243 47.619 0.00 0.00 0.00 3.16 F
3866 3948 0.687354 ATGTGCCGGTTCTTGACTCT 59.313 50.000 1.90 0.00 0.00 3.24 F
5102 5187 1.484240 CCCAACCTCATGAGAGTCCTC 59.516 57.143 24.62 0.00 40.40 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2303 0.241213 ATCCTACATCGATGACCGCG 59.759 55.000 31.33 13.13 38.37 6.46 R
2887 2969 4.806247 CACGCTAGAAGGATGAACTAAAGG 59.194 45.833 0.00 0.00 0.00 3.11 R
3726 3808 0.948678 TCTTGTGCCCTTGTAAACGC 59.051 50.000 0.00 0.00 0.00 4.84 R
5141 5226 0.250295 ACTGCACAGGTAACGCACAT 60.250 50.000 2.21 0.00 46.39 3.21 R
5144 5229 0.389757 TACACTGCACAGGTAACGCA 59.610 50.000 2.21 0.00 46.39 5.24 R
6488 6749 0.031616 AAACCCAGGACCTTTTGGCA 60.032 50.000 0.00 0.00 45.59 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 165 1.869767 GCTCGCACTGAATATCAAGGG 59.130 52.381 0.00 0.00 0.00 3.95
177 179 3.857157 TCAAGGGCTCAACAGTTAGTT 57.143 42.857 0.00 0.00 42.42 2.24
205 225 8.265764 GGGGAATTCTAGTGTAGAAGTTAATGT 58.734 37.037 5.23 0.00 46.90 2.71
237 259 9.881773 GGAGGATCTGGAATATTATCTAGAGAT 57.118 37.037 0.00 0.00 39.82 2.75
272 294 7.121759 CCTCAGAAGATTAGAATTTTTGCCTGA 59.878 37.037 0.00 0.00 0.00 3.86
273 295 8.408043 TCAGAAGATTAGAATTTTTGCCTGAA 57.592 30.769 0.00 0.00 0.00 3.02
360 383 4.875536 GTGCATGTACAATCTATGGTGTGA 59.124 41.667 9.26 0.00 0.00 3.58
431 454 4.152938 GCATTTTGGATGGCTTTGAGAAAC 59.847 41.667 0.00 0.00 0.00 2.78
471 494 5.371115 CGAAGGGCTTCTCAAAAATACAA 57.629 39.130 0.00 0.00 37.44 2.41
496 521 5.774498 CCAGATTGGCTCCTTATTTTACC 57.226 43.478 0.00 0.00 0.00 2.85
705 731 0.253630 AGGCAAGGAACTGGGGGATA 60.254 55.000 0.00 0.00 40.86 2.59
725 751 6.438763 GGATAACATTCGGGCTTTGAATAAG 58.561 40.000 1.09 0.00 34.41 1.73
730 756 6.119536 ACATTCGGGCTTTGAATAAGTATGA 58.880 36.000 0.00 0.00 34.41 2.15
839 890 3.059800 GCGAGTATATTTTGGAACGGAGC 60.060 47.826 0.00 0.00 0.00 4.70
1057 1108 1.578897 TCGGTCTCCATTCCATTCCA 58.421 50.000 0.00 0.00 0.00 3.53
1058 1109 2.126882 TCGGTCTCCATTCCATTCCAT 58.873 47.619 0.00 0.00 0.00 3.41
1059 1110 2.509548 TCGGTCTCCATTCCATTCCATT 59.490 45.455 0.00 0.00 0.00 3.16
1060 1111 2.880890 CGGTCTCCATTCCATTCCATTC 59.119 50.000 0.00 0.00 0.00 2.67
1061 1112 3.225940 GGTCTCCATTCCATTCCATTCC 58.774 50.000 0.00 0.00 0.00 3.01
1062 1113 3.117360 GGTCTCCATTCCATTCCATTCCT 60.117 47.826 0.00 0.00 0.00 3.36
1065 1116 1.338973 CCATTCCATTCCATTCCTGCG 59.661 52.381 0.00 0.00 0.00 5.18
1066 1117 2.300433 CATTCCATTCCATTCCTGCGA 58.700 47.619 0.00 0.00 0.00 5.10
1067 1118 1.750193 TTCCATTCCATTCCTGCGAC 58.250 50.000 0.00 0.00 0.00 5.19
1068 1119 0.461870 TCCATTCCATTCCTGCGACG 60.462 55.000 0.00 0.00 0.00 5.12
1069 1120 1.353103 CATTCCATTCCTGCGACGC 59.647 57.895 14.19 14.19 0.00 5.19
1070 1121 1.091771 CATTCCATTCCTGCGACGCT 61.092 55.000 22.08 0.00 0.00 5.07
1071 1122 0.392998 ATTCCATTCCTGCGACGCTT 60.393 50.000 22.08 0.00 0.00 4.68
1072 1123 1.298157 TTCCATTCCTGCGACGCTTG 61.298 55.000 22.08 13.37 0.00 4.01
1073 1124 1.741401 CCATTCCTGCGACGCTTGA 60.741 57.895 22.08 14.14 0.00 3.02
1074 1125 1.091771 CCATTCCTGCGACGCTTGAT 61.092 55.000 22.08 7.03 0.00 2.57
1075 1126 0.729116 CATTCCTGCGACGCTTGATT 59.271 50.000 22.08 10.48 0.00 2.57
1076 1127 0.729116 ATTCCTGCGACGCTTGATTG 59.271 50.000 22.08 3.18 0.00 2.67
1077 1128 0.320334 TTCCTGCGACGCTTGATTGA 60.320 50.000 22.08 5.51 0.00 2.57
1129 1180 1.064017 TCTTCCATTTCCAATCCCCCG 60.064 52.381 0.00 0.00 0.00 5.73
1181 1232 4.080582 TCCTGGATCGAAATTAGGAGCAAA 60.081 41.667 6.90 0.00 32.85 3.68
1185 1236 3.066291 TCGAAATTAGGAGCAAAGGCA 57.934 42.857 0.00 0.00 44.61 4.75
1217 1268 3.382832 CTCCTCGTCCGCCTTGGT 61.383 66.667 0.00 0.00 39.52 3.67
1308 1375 2.033662 GGCTCTGTTCGCATCGATTTAC 60.034 50.000 0.00 0.00 35.23 2.01
1313 1380 4.504097 TCTGTTCGCATCGATTTACTGATG 59.496 41.667 0.00 0.00 43.78 3.07
1344 1411 0.729140 CATGGCGAAAGAAACGGTGC 60.729 55.000 0.00 0.00 0.00 5.01
1629 1696 2.107141 CCGTGGAAGGCCGAGATC 59.893 66.667 0.00 0.00 36.79 2.75
1662 1729 2.440065 GGGTGCCATGCCGAATCA 60.440 61.111 0.00 0.00 0.00 2.57
1665 1732 1.102809 GGTGCCATGCCGAATCATCA 61.103 55.000 0.00 0.00 0.00 3.07
1700 1767 2.880890 CTGAAGTGTGCACTAGGCTTTT 59.119 45.455 19.41 1.90 45.15 2.27
1706 1773 2.878406 TGTGCACTAGGCTTTTTCACTC 59.122 45.455 19.41 0.00 45.15 3.51
1891 1958 0.698238 TGTCAGGCCCAACTAATGCT 59.302 50.000 0.00 0.00 0.00 3.79
2015 2090 1.305201 ACAAAGGCGAGCGAGAAAAA 58.695 45.000 0.00 0.00 0.00 1.94
2142 2219 2.434336 TCTGCGAGTGGGCTTATGTAAT 59.566 45.455 0.00 0.00 0.00 1.89
2152 2229 6.318900 AGTGGGCTTATGTAATAAAAGAGTGC 59.681 38.462 0.00 0.00 38.53 4.40
2226 2303 9.994432 CAAGAGGATACATAATGTTCAGTTTTC 57.006 33.333 0.00 0.00 41.41 2.29
2563 2644 5.118729 TGTCAACCTTTCCCTTCTAAACA 57.881 39.130 0.00 0.00 0.00 2.83
2688 2769 0.181350 CAGAATGGCCTGTAGGACCC 59.819 60.000 3.32 0.00 44.80 4.46
3495 3577 7.216973 TCTTCTTGAAGTAAGTCTAGACCAC 57.783 40.000 19.38 16.61 37.65 4.16
3512 3594 1.756538 CCACAAGTTTTGCTCCCTGTT 59.243 47.619 0.00 0.00 0.00 3.16
3726 3808 7.850982 GCTCCATGTTTATAGTAACAACAATCG 59.149 37.037 0.00 0.00 41.02 3.34
3863 3945 2.380084 TCTATGTGCCGGTTCTTGAC 57.620 50.000 1.90 0.00 0.00 3.18
3866 3948 0.687354 ATGTGCCGGTTCTTGACTCT 59.313 50.000 1.90 0.00 0.00 3.24
3927 4009 3.847671 TGCCGGTAACCATTATCATCA 57.152 42.857 1.90 0.00 0.00 3.07
4473 4556 7.819900 ACTTAGAGATGTGCCTTTTAACTACTG 59.180 37.037 0.00 0.00 0.00 2.74
4827 4910 1.541588 GCTCCATTTTCTGTGGTGTCC 59.458 52.381 0.00 0.00 37.96 4.02
4965 5049 6.846325 AGACTTAACAACAGAGCAACTAAC 57.154 37.500 0.00 0.00 0.00 2.34
4999 5083 4.455606 ACCTATCTGCTTCCATTGCTTAC 58.544 43.478 0.00 0.00 0.00 2.34
5001 5085 4.274459 CCTATCTGCTTCCATTGCTTACAC 59.726 45.833 0.00 0.00 0.00 2.90
5057 5142 6.333416 TGTGCTTAATTACAACAGTTTTGCA 58.667 32.000 0.00 0.00 0.00 4.08
5078 5163 4.297510 CAGTCCGCATAGAAGAAGATGAG 58.702 47.826 0.00 0.00 0.00 2.90
5093 5178 2.709934 AGATGAGATCCCCAACCTCATG 59.290 50.000 8.60 0.00 44.81 3.07
5094 5179 2.268796 TGAGATCCCCAACCTCATGA 57.731 50.000 0.00 0.00 32.57 3.07
5102 5187 1.484240 CCCAACCTCATGAGAGTCCTC 59.516 57.143 24.62 0.00 40.40 3.71
5109 5194 3.636300 CCTCATGAGAGTCCTCCAAGTAG 59.364 52.174 24.62 0.00 40.40 2.57
5112 5197 3.544698 TGAGAGTCCTCCAAGTAGGTT 57.455 47.619 0.00 0.00 38.66 3.50
5113 5198 3.432378 TGAGAGTCCTCCAAGTAGGTTC 58.568 50.000 0.00 0.00 38.66 3.62
5114 5199 3.076182 TGAGAGTCCTCCAAGTAGGTTCT 59.924 47.826 0.00 0.00 38.66 3.01
5115 5200 4.291513 TGAGAGTCCTCCAAGTAGGTTCTA 59.708 45.833 0.00 0.00 38.66 2.10
5116 5201 5.044030 TGAGAGTCCTCCAAGTAGGTTCTAT 60.044 44.000 0.00 0.00 38.66 1.98
5117 5202 5.844601 AGAGTCCTCCAAGTAGGTTCTATT 58.155 41.667 0.00 0.00 37.91 1.73
5118 5203 6.265304 AGAGTCCTCCAAGTAGGTTCTATTT 58.735 40.000 0.00 0.00 37.91 1.40
5144 5229 7.823745 TTGCTTTCCTTTTCTCTTCTTATGT 57.176 32.000 0.00 0.00 0.00 2.29
5147 5232 5.862924 TTCCTTTTCTCTTCTTATGTGCG 57.137 39.130 0.00 0.00 0.00 5.34
5149 5234 5.305585 TCCTTTTCTCTTCTTATGTGCGTT 58.694 37.500 0.00 0.00 0.00 4.84
5152 5237 6.402226 CCTTTTCTCTTCTTATGTGCGTTACC 60.402 42.308 0.00 0.00 0.00 2.85
5161 5246 1.157257 TGTGCGTTACCTGTGCAGTG 61.157 55.000 0.00 0.00 39.67 3.66
5166 5251 2.325761 CGTTACCTGTGCAGTGTACTC 58.674 52.381 12.78 0.00 0.00 2.59
5169 5254 0.393077 ACCTGTGCAGTGTACTCACC 59.607 55.000 12.78 0.00 44.83 4.02
5170 5255 0.667487 CCTGTGCAGTGTACTCACCG 60.667 60.000 12.78 0.00 44.83 4.94
5191 5277 4.513442 CGTTTTCATCTCACCAGGGAATA 58.487 43.478 0.00 0.00 0.00 1.75
5197 5283 4.408921 TCATCTCACCAGGGAATAAACGAT 59.591 41.667 0.00 0.00 0.00 3.73
5203 5289 4.570772 CACCAGGGAATAAACGATACACAG 59.429 45.833 0.00 0.00 0.00 3.66
5326 5412 4.459089 GAGGCGGCCTGGTCAGTC 62.459 72.222 29.31 6.31 31.76 3.51
5365 5451 2.027745 AGATGGTGATGACGTCTTTGCT 60.028 45.455 17.92 0.77 0.00 3.91
5425 5511 9.143631 CAAAGCTTCTCCATTTAGTTTTTATGG 57.856 33.333 0.00 0.00 40.14 2.74
5469 5559 0.037447 TGGCGTCAATCCCACATTCA 59.963 50.000 0.00 0.00 0.00 2.57
5759 5881 2.516906 AGGCTTAGGATAGGCGTACTC 58.483 52.381 0.00 0.00 45.73 2.59
5832 5954 6.491383 AGGGATGATCTGATAATGGAAATGG 58.509 40.000 0.00 0.00 0.00 3.16
5857 5979 4.808895 ACTCGCCTTTTCATTTTTGGTTTC 59.191 37.500 0.00 0.00 0.00 2.78
5864 5987 7.362487 GCCTTTTCATTTTTGGTTTCCTTTGAA 60.362 33.333 0.00 0.00 0.00 2.69
5871 5994 9.323985 CATTTTTGGTTTCCTTTGAACAGATTA 57.676 29.630 0.00 0.00 0.00 1.75
5889 6012 7.365741 ACAGATTATTGCTGTTTTGACAGAAG 58.634 34.615 10.51 0.00 43.67 2.85
5896 6019 4.518970 TGCTGTTTTGACAGAAGATAACCC 59.481 41.667 10.51 0.00 39.99 4.11
5925 6054 7.742556 CATTCTCTGGAAAAAGGGATAGATC 57.257 40.000 0.00 0.00 34.90 2.75
5926 6055 6.891306 TTCTCTGGAAAAAGGGATAGATCA 57.109 37.500 0.00 0.00 0.00 2.92
5939 6068 3.624861 GGATAGATCACAGCAACCTTGTG 59.375 47.826 0.00 0.00 45.61 3.33
5966 6101 4.037446 TGAGCCAAAACTGATACACCAAAC 59.963 41.667 0.00 0.00 0.00 2.93
5971 6106 6.259829 GCCAAAACTGATACACCAAACAAATT 59.740 34.615 0.00 0.00 0.00 1.82
5972 6107 7.629130 CCAAAACTGATACACCAAACAAATTG 58.371 34.615 0.00 0.00 38.84 2.32
5985 6120 6.360844 CAAACAAATTGGAAGCAAATGTGA 57.639 33.333 0.00 0.00 35.27 3.58
5987 6122 6.548441 AACAAATTGGAAGCAAATGTGATG 57.452 33.333 0.00 0.00 0.00 3.07
5989 6124 6.757237 ACAAATTGGAAGCAAATGTGATGTA 58.243 32.000 0.00 0.00 0.00 2.29
5992 6239 7.701539 AATTGGAAGCAAATGTGATGTAGTA 57.298 32.000 0.00 0.00 0.00 1.82
5994 6241 8.978874 ATTGGAAGCAAATGTGATGTAGTATA 57.021 30.769 0.00 0.00 0.00 1.47
5997 6244 7.445096 TGGAAGCAAATGTGATGTAGTATATGG 59.555 37.037 0.00 0.00 0.00 2.74
5999 6246 9.489084 GAAGCAAATGTGATGTAGTATATGGTA 57.511 33.333 0.00 0.00 0.00 3.25
6000 6247 9.845740 AAGCAAATGTGATGTAGTATATGGTAA 57.154 29.630 0.00 0.00 0.00 2.85
6021 6268 6.466730 GGTAATTTTATTTTGTACCGCTGTCG 59.533 38.462 0.00 0.00 0.00 4.35
6127 6374 3.815856 TGTGCAAAAACATGGACACAT 57.184 38.095 0.00 0.00 45.14 3.21
6250 6497 6.621613 CATTCATGCCATTCCATCTTATCAG 58.378 40.000 0.00 0.00 0.00 2.90
6330 6581 2.423185 ACGTACGTTCCACGGATGAATA 59.577 45.455 16.72 0.00 43.91 1.75
6331 6582 3.067180 ACGTACGTTCCACGGATGAATAT 59.933 43.478 16.72 0.00 43.91 1.28
6345 6596 4.142093 GGATGAATATGCTTGGTGCTTTGT 60.142 41.667 0.00 0.00 43.37 2.83
6347 6598 3.825585 TGAATATGCTTGGTGCTTTGTGA 59.174 39.130 0.00 0.00 43.37 3.58
6350 6601 1.985473 TGCTTGGTGCTTTGTGATCT 58.015 45.000 0.00 0.00 43.37 2.75
6404 6665 4.270008 AGTGAAACAACCAGCACTTAACT 58.730 39.130 0.00 0.00 41.43 2.24
6414 6675 6.803154 ACCAGCACTTAACTTGAATTAGAC 57.197 37.500 0.00 0.00 0.00 2.59
6416 6677 6.770785 ACCAGCACTTAACTTGAATTAGACAA 59.229 34.615 0.00 0.00 0.00 3.18
6421 6682 7.469456 GCACTTAACTTGAATTAGACAAACCCA 60.469 37.037 0.00 0.00 0.00 4.51
6423 6684 8.630037 ACTTAACTTGAATTAGACAAACCCAAG 58.370 33.333 0.00 0.00 36.58 3.61
6441 6702 7.200434 ACCCAAGTTGATAGTGATAGTTCAT 57.800 36.000 3.87 0.00 33.56 2.57
6442 6703 7.633789 ACCCAAGTTGATAGTGATAGTTCATT 58.366 34.615 3.87 0.00 33.56 2.57
6443 6704 8.109634 ACCCAAGTTGATAGTGATAGTTCATTT 58.890 33.333 3.87 0.00 33.56 2.32
6479 6740 9.975218 ATATATTGTTGGTTTCAGGAAGTACTT 57.025 29.630 8.13 8.13 0.00 2.24
6482 6743 5.365619 TGTTGGTTTCAGGAAGTACTTCTC 58.634 41.667 29.66 21.02 39.45 2.87
6483 6744 5.104693 TGTTGGTTTCAGGAAGTACTTCTCA 60.105 40.000 29.66 14.50 39.45 3.27
6486 6747 5.130477 TGGTTTCAGGAAGTACTTCTCACTT 59.870 40.000 29.66 11.81 38.92 3.16
6487 6748 5.467063 GGTTTCAGGAAGTACTTCTCACTTG 59.533 44.000 29.66 20.27 36.38 3.16
6488 6749 5.871396 TTCAGGAAGTACTTCTCACTTGT 57.129 39.130 29.66 8.10 36.38 3.16
6489 6750 5.201713 TCAGGAAGTACTTCTCACTTGTG 57.798 43.478 29.66 17.08 36.38 3.33
6494 6759 4.150897 AGTACTTCTCACTTGTGCCAAA 57.849 40.909 0.00 0.00 0.00 3.28
6507 6772 0.031616 TGCCAAAAGGTCCTGGGTTT 60.032 50.000 0.00 0.00 32.95 3.27
6529 6794 3.207669 CGGCCTCTCTGCATTGCC 61.208 66.667 6.12 0.00 38.74 4.52
6530 6795 2.274760 GGCCTCTCTGCATTGCCT 59.725 61.111 6.12 0.00 39.05 4.75
6544 6809 3.291611 GCCTTGTGCAGGGGAATG 58.708 61.111 2.54 0.00 44.16 2.67
6545 6810 2.353610 GCCTTGTGCAGGGGAATGG 61.354 63.158 2.54 0.00 44.16 3.16
6546 6811 1.077265 CCTTGTGCAGGGGAATGGT 59.923 57.895 0.00 0.00 39.39 3.55
6547 6812 0.542702 CCTTGTGCAGGGGAATGGTT 60.543 55.000 0.00 0.00 39.39 3.67
6548 6813 1.341080 CTTGTGCAGGGGAATGGTTT 58.659 50.000 0.00 0.00 0.00 3.27
6549 6814 2.524306 CTTGTGCAGGGGAATGGTTTA 58.476 47.619 0.00 0.00 0.00 2.01
6550 6815 1.917872 TGTGCAGGGGAATGGTTTAC 58.082 50.000 0.00 0.00 0.00 2.01
6551 6816 1.182667 GTGCAGGGGAATGGTTTACC 58.817 55.000 0.00 0.00 34.72 2.85
6552 6817 1.080638 TGCAGGGGAATGGTTTACCT 58.919 50.000 0.00 0.00 35.94 3.08
6553 6818 1.431243 TGCAGGGGAATGGTTTACCTT 59.569 47.619 0.00 0.00 35.94 3.50
6554 6819 2.100197 GCAGGGGAATGGTTTACCTTC 58.900 52.381 0.00 2.30 35.94 3.46
6555 6820 2.365582 CAGGGGAATGGTTTACCTTCG 58.634 52.381 0.00 0.00 35.94 3.79
6556 6821 1.990327 AGGGGAATGGTTTACCTTCGT 59.010 47.619 0.00 0.00 35.94 3.85
6557 6822 3.054948 CAGGGGAATGGTTTACCTTCGTA 60.055 47.826 0.00 0.00 35.94 3.43
6558 6823 3.784202 AGGGGAATGGTTTACCTTCGTAT 59.216 43.478 0.00 0.00 35.94 3.06
6559 6824 4.970640 AGGGGAATGGTTTACCTTCGTATA 59.029 41.667 0.00 0.00 35.94 1.47
6560 6825 5.609708 AGGGGAATGGTTTACCTTCGTATAT 59.390 40.000 0.00 0.00 35.94 0.86
6561 6826 6.102174 AGGGGAATGGTTTACCTTCGTATATT 59.898 38.462 0.00 0.00 35.94 1.28
6562 6827 6.429078 GGGGAATGGTTTACCTTCGTATATTC 59.571 42.308 0.00 0.00 35.94 1.75
6563 6828 6.429078 GGGAATGGTTTACCTTCGTATATTCC 59.571 42.308 12.89 12.89 39.98 3.01
6564 6829 7.222161 GGAATGGTTTACCTTCGTATATTCCT 58.778 38.462 13.56 0.00 38.50 3.36
6565 6830 7.387122 GGAATGGTTTACCTTCGTATATTCCTC 59.613 40.741 13.56 0.00 38.50 3.71
6566 6831 6.165700 TGGTTTACCTTCGTATATTCCTCC 57.834 41.667 0.00 0.00 36.82 4.30
6567 6832 5.070847 TGGTTTACCTTCGTATATTCCTCCC 59.929 44.000 0.00 0.00 36.82 4.30
6568 6833 5.512060 GGTTTACCTTCGTATATTCCTCCCC 60.512 48.000 0.00 0.00 0.00 4.81
6569 6834 3.339713 ACCTTCGTATATTCCTCCCCA 57.660 47.619 0.00 0.00 0.00 4.96
6570 6835 3.240302 ACCTTCGTATATTCCTCCCCAG 58.760 50.000 0.00 0.00 0.00 4.45
6571 6836 3.116862 ACCTTCGTATATTCCTCCCCAGA 60.117 47.826 0.00 0.00 0.00 3.86
6572 6837 3.258622 CCTTCGTATATTCCTCCCCAGAC 59.741 52.174 0.00 0.00 0.00 3.51
6573 6838 2.885616 TCGTATATTCCTCCCCAGACC 58.114 52.381 0.00 0.00 0.00 3.85
6574 6839 1.900486 CGTATATTCCTCCCCAGACCC 59.100 57.143 0.00 0.00 0.00 4.46
6575 6840 2.267192 GTATATTCCTCCCCAGACCCC 58.733 57.143 0.00 0.00 0.00 4.95
6576 6841 0.653397 ATATTCCTCCCCAGACCCCA 59.347 55.000 0.00 0.00 0.00 4.96
6577 6842 0.327191 TATTCCTCCCCAGACCCCAC 60.327 60.000 0.00 0.00 0.00 4.61
6578 6843 3.756230 TATTCCTCCCCAGACCCCACC 62.756 61.905 0.00 0.00 0.00 4.61
6579 6844 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
6580 6845 2.784984 CTCCCCAGACCCCACCTA 59.215 66.667 0.00 0.00 0.00 3.08
6581 6846 1.383248 CTCCCCAGACCCCACCTAG 60.383 68.421 0.00 0.00 0.00 3.02
6582 6847 2.181773 TCCCCAGACCCCACCTAGT 61.182 63.158 0.00 0.00 0.00 2.57
6583 6848 0.856767 TCCCCAGACCCCACCTAGTA 60.857 60.000 0.00 0.00 0.00 1.82
6584 6849 0.267960 CCCCAGACCCCACCTAGTAT 59.732 60.000 0.00 0.00 0.00 2.12
6585 6850 1.424638 CCCAGACCCCACCTAGTATG 58.575 60.000 0.00 0.00 0.00 2.39
6586 6851 1.424638 CCAGACCCCACCTAGTATGG 58.575 60.000 3.68 3.68 38.87 2.74
6587 6852 1.062428 CCAGACCCCACCTAGTATGGA 60.062 57.143 11.10 0.00 46.13 3.41
6588 6853 2.320781 CAGACCCCACCTAGTATGGAG 58.679 57.143 11.10 1.61 39.87 3.86
6589 6854 1.938069 AGACCCCACCTAGTATGGAGT 59.062 52.381 11.10 4.71 39.87 3.85
6590 6855 2.318207 AGACCCCACCTAGTATGGAGTT 59.682 50.000 11.10 0.00 39.87 3.01
6591 6856 3.113043 GACCCCACCTAGTATGGAGTTT 58.887 50.000 11.10 0.00 39.87 2.66
6592 6857 3.113043 ACCCCACCTAGTATGGAGTTTC 58.887 50.000 11.10 0.00 39.87 2.78
6593 6858 3.112263 CCCCACCTAGTATGGAGTTTCA 58.888 50.000 11.10 0.00 39.87 2.69
6594 6859 3.521937 CCCCACCTAGTATGGAGTTTCAA 59.478 47.826 11.10 0.00 39.87 2.69
6595 6860 4.384208 CCCCACCTAGTATGGAGTTTCAAG 60.384 50.000 11.10 0.00 39.87 3.02
6596 6861 4.192317 CCACCTAGTATGGAGTTTCAAGC 58.808 47.826 4.55 0.00 39.87 4.01
6597 6862 4.323485 CCACCTAGTATGGAGTTTCAAGCA 60.323 45.833 4.55 0.00 39.87 3.91
6598 6863 5.431765 CACCTAGTATGGAGTTTCAAGCAT 58.568 41.667 0.00 0.00 0.00 3.79
6599 6864 5.882557 CACCTAGTATGGAGTTTCAAGCATT 59.117 40.000 0.00 0.00 0.00 3.56
6600 6865 9.016576 CCACCTAGTATGGAGTTTCAAGCATTG 62.017 44.444 4.55 0.00 43.39 2.82
6613 6878 4.326504 CAAGCATTGGGTCTGTCTTTTT 57.673 40.909 0.00 0.00 43.94 1.94
6636 6901 8.533569 TTTTTAGAATGGTCTGTCCTTTTCTT 57.466 30.769 12.11 2.37 38.89 2.52
6637 6902 8.533569 TTTTAGAATGGTCTGTCCTTTTCTTT 57.466 30.769 12.11 0.00 38.89 2.52
6638 6903 9.635404 TTTTAGAATGGTCTGTCCTTTTCTTTA 57.365 29.630 12.11 3.34 38.89 1.85
6639 6904 9.807921 TTTAGAATGGTCTGTCCTTTTCTTTAT 57.192 29.630 12.11 0.00 38.89 1.40
6641 6906 8.794335 AGAATGGTCTGTCCTTTTCTTTATAC 57.206 34.615 4.73 0.00 36.62 1.47
6642 6907 8.383175 AGAATGGTCTGTCCTTTTCTTTATACA 58.617 33.333 4.73 0.00 36.62 2.29
6643 6908 8.567285 AATGGTCTGTCCTTTTCTTTATACAG 57.433 34.615 0.00 0.00 36.52 2.74
6644 6909 6.472887 TGGTCTGTCCTTTTCTTTATACAGG 58.527 40.000 0.00 0.00 36.01 4.00
6645 6910 6.271391 TGGTCTGTCCTTTTCTTTATACAGGA 59.729 38.462 0.00 0.00 36.01 3.86
6646 6911 7.037586 TGGTCTGTCCTTTTCTTTATACAGGAT 60.038 37.037 0.00 0.00 36.05 3.24
6647 6912 8.483758 GGTCTGTCCTTTTCTTTATACAGGATA 58.516 37.037 0.00 0.00 36.05 2.59
6648 6913 9.535878 GTCTGTCCTTTTCTTTATACAGGATAG 57.464 37.037 4.37 4.37 41.78 2.08
6649 6914 9.268282 TCTGTCCTTTTCTTTATACAGGATAGT 57.732 33.333 9.34 0.00 41.39 2.12
6650 6915 9.892130 CTGTCCTTTTCTTTATACAGGATAGTT 57.108 33.333 0.00 0.00 37.83 2.24
6651 6916 9.667107 TGTCCTTTTCTTTATACAGGATAGTTG 57.333 33.333 0.00 0.00 36.05 3.16
6652 6917 9.110502 GTCCTTTTCTTTATACAGGATAGTTGG 57.889 37.037 0.00 0.00 36.05 3.77
6653 6918 7.773690 TCCTTTTCTTTATACAGGATAGTTGGC 59.226 37.037 0.00 0.00 0.00 4.52
6654 6919 7.013369 CCTTTTCTTTATACAGGATAGTTGGCC 59.987 40.741 0.00 0.00 0.00 5.36
6655 6920 6.569127 TTCTTTATACAGGATAGTTGGCCA 57.431 37.500 0.00 0.00 0.00 5.36
6656 6921 6.174720 TCTTTATACAGGATAGTTGGCCAG 57.825 41.667 5.11 0.00 0.00 4.85
6657 6922 5.903010 TCTTTATACAGGATAGTTGGCCAGA 59.097 40.000 5.11 0.00 0.00 3.86
6658 6923 5.546621 TTATACAGGATAGTTGGCCAGAC 57.453 43.478 5.11 7.77 0.00 3.51
6659 6924 1.958288 ACAGGATAGTTGGCCAGACT 58.042 50.000 19.86 19.86 0.00 3.24
6660 6925 2.269940 ACAGGATAGTTGGCCAGACTT 58.730 47.619 20.78 11.73 0.00 3.01
6661 6926 2.026822 ACAGGATAGTTGGCCAGACTTG 60.027 50.000 20.78 16.09 0.00 3.16
6662 6927 1.065126 AGGATAGTTGGCCAGACTTGC 60.065 52.381 20.78 14.85 0.00 4.01
6663 6928 1.340017 GGATAGTTGGCCAGACTTGCA 60.340 52.381 20.78 8.16 0.00 4.08
6664 6929 2.012673 GATAGTTGGCCAGACTTGCAG 58.987 52.381 20.78 0.00 0.00 4.41
6665 6930 0.606401 TAGTTGGCCAGACTTGCAGC 60.606 55.000 20.78 0.00 0.00 5.25
6666 6931 2.598394 TTGGCCAGACTTGCAGCC 60.598 61.111 5.11 5.48 45.96 4.85
6667 6932 4.666253 TGGCCAGACTTGCAGCCC 62.666 66.667 0.00 0.00 45.14 5.19
6670 6935 4.335647 CCAGACTTGCAGCCCGGT 62.336 66.667 0.00 0.00 0.00 5.28
6671 6936 2.662596 CAGACTTGCAGCCCGGTA 59.337 61.111 0.00 0.00 0.00 4.02
6672 6937 1.448540 CAGACTTGCAGCCCGGTAG 60.449 63.158 0.00 0.00 0.00 3.18
6673 6938 1.913762 AGACTTGCAGCCCGGTAGT 60.914 57.895 0.00 0.00 0.00 2.73
6674 6939 1.741770 GACTTGCAGCCCGGTAGTG 60.742 63.158 0.00 0.00 0.00 2.74
6675 6940 2.167398 GACTTGCAGCCCGGTAGTGA 62.167 60.000 0.00 0.00 0.00 3.41
6676 6941 1.221840 CTTGCAGCCCGGTAGTGAT 59.778 57.895 0.00 0.00 0.00 3.06
6677 6942 0.464036 CTTGCAGCCCGGTAGTGATA 59.536 55.000 0.00 0.00 0.00 2.15
6678 6943 0.464036 TTGCAGCCCGGTAGTGATAG 59.536 55.000 0.00 0.00 0.00 2.08
6679 6944 1.367840 GCAGCCCGGTAGTGATAGG 59.632 63.158 0.00 0.00 0.00 2.57
6680 6945 1.113517 GCAGCCCGGTAGTGATAGGA 61.114 60.000 0.00 0.00 0.00 2.94
6681 6946 1.633774 CAGCCCGGTAGTGATAGGAT 58.366 55.000 0.00 0.00 0.00 3.24
6682 6947 1.971357 CAGCCCGGTAGTGATAGGATT 59.029 52.381 0.00 0.00 0.00 3.01
6683 6948 2.368875 CAGCCCGGTAGTGATAGGATTT 59.631 50.000 0.00 0.00 0.00 2.17
6684 6949 3.576982 CAGCCCGGTAGTGATAGGATTTA 59.423 47.826 0.00 0.00 0.00 1.40
6685 6950 4.223032 CAGCCCGGTAGTGATAGGATTTAT 59.777 45.833 0.00 0.00 0.00 1.40
6686 6951 4.844655 AGCCCGGTAGTGATAGGATTTATT 59.155 41.667 0.00 0.00 0.00 1.40
6687 6952 5.309806 AGCCCGGTAGTGATAGGATTTATTT 59.690 40.000 0.00 0.00 0.00 1.40
6688 6953 6.499350 AGCCCGGTAGTGATAGGATTTATTTA 59.501 38.462 0.00 0.00 0.00 1.40
6689 6954 6.817140 GCCCGGTAGTGATAGGATTTATTTAG 59.183 42.308 0.00 0.00 0.00 1.85
6690 6955 6.817140 CCCGGTAGTGATAGGATTTATTTAGC 59.183 42.308 0.00 0.00 0.00 3.09
6691 6956 7.383687 CCGGTAGTGATAGGATTTATTTAGCA 58.616 38.462 0.00 0.00 0.00 3.49
6692 6957 7.545965 CCGGTAGTGATAGGATTTATTTAGCAG 59.454 40.741 0.00 0.00 0.00 4.24
6693 6958 8.088981 CGGTAGTGATAGGATTTATTTAGCAGT 58.911 37.037 0.00 0.00 0.00 4.40
6694 6959 9.780186 GGTAGTGATAGGATTTATTTAGCAGTT 57.220 33.333 0.00 0.00 0.00 3.16
6697 6962 9.905713 AGTGATAGGATTTATTTAGCAGTTGAA 57.094 29.630 0.00 0.00 0.00 2.69
6699 6964 9.342308 TGATAGGATTTATTTAGCAGTTGAAGG 57.658 33.333 0.00 0.00 0.00 3.46
6700 6965 9.561069 GATAGGATTTATTTAGCAGTTGAAGGA 57.439 33.333 0.00 0.00 0.00 3.36
6702 6967 8.829373 AGGATTTATTTAGCAGTTGAAGGATT 57.171 30.769 0.00 0.00 0.00 3.01
6703 6968 9.920946 AGGATTTATTTAGCAGTTGAAGGATTA 57.079 29.630 0.00 0.00 0.00 1.75
6704 6969 9.952188 GGATTTATTTAGCAGTTGAAGGATTAC 57.048 33.333 0.00 0.00 0.00 1.89
6709 6974 7.994425 TTTAGCAGTTGAAGGATTACAATGA 57.006 32.000 0.00 0.00 0.00 2.57
6710 6975 7.615582 TTAGCAGTTGAAGGATTACAATGAG 57.384 36.000 0.00 0.00 0.00 2.90
6711 6976 5.809001 AGCAGTTGAAGGATTACAATGAGA 58.191 37.500 0.00 0.00 0.00 3.27
6712 6977 6.240894 AGCAGTTGAAGGATTACAATGAGAA 58.759 36.000 0.00 0.00 0.00 2.87
6713 6978 6.373774 AGCAGTTGAAGGATTACAATGAGAAG 59.626 38.462 0.00 0.00 0.00 2.85
6714 6979 6.372659 GCAGTTGAAGGATTACAATGAGAAGA 59.627 38.462 0.00 0.00 0.00 2.87
6715 6980 7.066766 GCAGTTGAAGGATTACAATGAGAAGAT 59.933 37.037 0.00 0.00 0.00 2.40
6716 6981 8.610896 CAGTTGAAGGATTACAATGAGAAGATC 58.389 37.037 0.00 0.00 0.00 2.75
6717 6982 8.324306 AGTTGAAGGATTACAATGAGAAGATCA 58.676 33.333 0.00 0.00 43.70 2.92
6728 6993 4.224991 TGAGAAGATCATGATGCAACCA 57.775 40.909 14.30 2.90 31.12 3.67
6729 6994 4.591929 TGAGAAGATCATGATGCAACCAA 58.408 39.130 14.30 0.00 31.12 3.67
6730 6995 4.397103 TGAGAAGATCATGATGCAACCAAC 59.603 41.667 14.30 0.00 31.12 3.77
6731 6996 4.338012 AGAAGATCATGATGCAACCAACA 58.662 39.130 14.30 0.00 0.00 3.33
6732 6997 4.157289 AGAAGATCATGATGCAACCAACAC 59.843 41.667 14.30 0.00 0.00 3.32
6733 6998 2.421073 AGATCATGATGCAACCAACACG 59.579 45.455 14.30 0.00 0.00 4.49
6734 6999 1.603456 TCATGATGCAACCAACACGT 58.397 45.000 0.00 0.00 0.00 4.49
6735 7000 1.266446 TCATGATGCAACCAACACGTG 59.734 47.619 15.48 15.48 0.00 4.49
6744 7009 3.671262 CCAACACGTGGTACTCACA 57.329 52.632 21.57 0.00 46.36 3.58
6745 7010 2.163818 CCAACACGTGGTACTCACAT 57.836 50.000 21.57 0.00 46.36 3.21
6746 7011 2.066262 CCAACACGTGGTACTCACATC 58.934 52.381 21.57 0.00 46.36 3.06
6747 7012 2.066262 CAACACGTGGTACTCACATCC 58.934 52.381 21.57 0.00 46.36 3.51
6748 7013 0.242825 ACACGTGGTACTCACATCCG 59.757 55.000 21.57 3.92 46.36 4.18
6749 7014 0.242825 CACGTGGTACTCACATCCGT 59.757 55.000 7.95 4.41 46.36 4.69
6750 7015 0.963962 ACGTGGTACTCACATCCGTT 59.036 50.000 12.89 0.00 46.36 4.44
6751 7016 1.068055 ACGTGGTACTCACATCCGTTC 60.068 52.381 12.89 0.00 46.36 3.95
6752 7017 1.201647 CGTGGTACTCACATCCGTTCT 59.798 52.381 12.89 0.00 46.36 3.01
6753 7018 2.421073 CGTGGTACTCACATCCGTTCTA 59.579 50.000 12.89 0.00 46.36 2.10
6754 7019 3.730061 CGTGGTACTCACATCCGTTCTAC 60.730 52.174 12.89 0.00 46.36 2.59
6755 7020 2.756760 TGGTACTCACATCCGTTCTACC 59.243 50.000 0.00 0.00 0.00 3.18
6756 7021 2.223433 GGTACTCACATCCGTTCTACCG 60.223 54.545 0.00 0.00 0.00 4.02
6757 7022 1.542492 ACTCACATCCGTTCTACCGT 58.458 50.000 0.00 0.00 0.00 4.83
6758 7023 2.715046 ACTCACATCCGTTCTACCGTA 58.285 47.619 0.00 0.00 0.00 4.02
6759 7024 3.084039 ACTCACATCCGTTCTACCGTAA 58.916 45.455 0.00 0.00 0.00 3.18
6760 7025 3.698040 ACTCACATCCGTTCTACCGTAAT 59.302 43.478 0.00 0.00 0.00 1.89
6761 7026 4.159135 ACTCACATCCGTTCTACCGTAATT 59.841 41.667 0.00 0.00 0.00 1.40
6762 7027 5.357878 ACTCACATCCGTTCTACCGTAATTA 59.642 40.000 0.00 0.00 0.00 1.40
6763 7028 6.127647 ACTCACATCCGTTCTACCGTAATTAA 60.128 38.462 0.00 0.00 0.00 1.40
6764 7029 6.267817 TCACATCCGTTCTACCGTAATTAAG 58.732 40.000 0.00 0.00 0.00 1.85
6765 7030 5.045872 ACATCCGTTCTACCGTAATTAAGC 58.954 41.667 0.00 0.00 0.00 3.09
6766 7031 4.989279 TCCGTTCTACCGTAATTAAGCT 57.011 40.909 0.00 0.00 0.00 3.74
6767 7032 6.039717 ACATCCGTTCTACCGTAATTAAGCTA 59.960 38.462 0.00 0.00 0.00 3.32
6768 7033 5.821204 TCCGTTCTACCGTAATTAAGCTAC 58.179 41.667 0.00 0.00 0.00 3.58
6769 7034 5.356751 TCCGTTCTACCGTAATTAAGCTACA 59.643 40.000 0.00 0.00 0.00 2.74
6770 7035 5.456822 CCGTTCTACCGTAATTAAGCTACAC 59.543 44.000 0.00 0.00 0.00 2.90
6771 7036 6.261118 CGTTCTACCGTAATTAAGCTACACT 58.739 40.000 0.00 0.00 0.00 3.55
6772 7037 7.409697 CGTTCTACCGTAATTAAGCTACACTA 58.590 38.462 0.00 0.00 0.00 2.74
6773 7038 8.072567 CGTTCTACCGTAATTAAGCTACACTAT 58.927 37.037 0.00 0.00 0.00 2.12
6774 7039 9.178427 GTTCTACCGTAATTAAGCTACACTATG 57.822 37.037 0.00 0.00 0.00 2.23
6775 7040 8.455903 TCTACCGTAATTAAGCTACACTATGT 57.544 34.615 0.00 0.00 0.00 2.29
6776 7041 8.347771 TCTACCGTAATTAAGCTACACTATGTG 58.652 37.037 0.00 0.00 39.75 3.21
6777 7042 5.751990 ACCGTAATTAAGCTACACTATGTGC 59.248 40.000 0.00 0.00 36.98 4.57
6778 7043 5.751509 CCGTAATTAAGCTACACTATGTGCA 59.248 40.000 0.00 0.00 36.98 4.57
6779 7044 6.256975 CCGTAATTAAGCTACACTATGTGCAA 59.743 38.462 0.00 0.00 36.98 4.08
6780 7045 7.117454 CGTAATTAAGCTACACTATGTGCAAC 58.883 38.462 0.00 0.00 36.98 4.17
6781 7046 6.436843 AATTAAGCTACACTATGTGCAACC 57.563 37.500 0.00 0.00 36.98 3.77
6782 7047 2.403252 AGCTACACTATGTGCAACCC 57.597 50.000 0.00 0.00 36.98 4.11
6783 7048 1.909302 AGCTACACTATGTGCAACCCT 59.091 47.619 0.00 0.00 36.98 4.34
6784 7049 2.009774 GCTACACTATGTGCAACCCTG 58.990 52.381 0.00 0.00 36.98 4.45
6785 7050 2.615493 GCTACACTATGTGCAACCCTGT 60.615 50.000 0.00 0.00 36.98 4.00
6786 7051 2.656947 ACACTATGTGCAACCCTGTT 57.343 45.000 0.00 0.00 36.98 3.16
6787 7052 2.504367 ACACTATGTGCAACCCTGTTC 58.496 47.619 0.00 0.00 36.98 3.18
6788 7053 2.106511 ACACTATGTGCAACCCTGTTCT 59.893 45.455 0.00 0.00 36.98 3.01
6789 7054 3.326588 ACACTATGTGCAACCCTGTTCTA 59.673 43.478 0.00 0.00 36.98 2.10
6790 7055 4.019321 ACACTATGTGCAACCCTGTTCTAT 60.019 41.667 0.00 0.00 36.98 1.98
6791 7056 4.943705 CACTATGTGCAACCCTGTTCTATT 59.056 41.667 0.00 0.00 34.36 1.73
6792 7057 6.112734 CACTATGTGCAACCCTGTTCTATTA 58.887 40.000 0.00 0.00 34.36 0.98
6793 7058 6.767902 CACTATGTGCAACCCTGTTCTATTAT 59.232 38.462 0.00 0.00 34.36 1.28
6794 7059 7.283127 CACTATGTGCAACCCTGTTCTATTATT 59.717 37.037 0.00 0.00 34.36 1.40
6795 7060 6.699575 ATGTGCAACCCTGTTCTATTATTC 57.300 37.500 0.00 0.00 34.36 1.75
6796 7061 5.565509 TGTGCAACCCTGTTCTATTATTCA 58.434 37.500 0.00 0.00 34.36 2.57
6797 7062 6.186957 TGTGCAACCCTGTTCTATTATTCAT 58.813 36.000 0.00 0.00 34.36 2.57
6798 7063 6.095300 TGTGCAACCCTGTTCTATTATTCATG 59.905 38.462 0.00 0.00 34.36 3.07
6799 7064 6.095440 GTGCAACCCTGTTCTATTATTCATGT 59.905 38.462 0.00 0.00 0.00 3.21
6800 7065 6.663093 TGCAACCCTGTTCTATTATTCATGTT 59.337 34.615 0.00 0.00 0.00 2.71
6801 7066 7.178274 TGCAACCCTGTTCTATTATTCATGTTT 59.822 33.333 0.00 0.00 0.00 2.83
6802 7067 7.489113 GCAACCCTGTTCTATTATTCATGTTTG 59.511 37.037 0.00 0.00 0.00 2.93
6803 7068 8.522830 CAACCCTGTTCTATTATTCATGTTTGT 58.477 33.333 0.00 0.00 0.00 2.83
6804 7069 8.055279 ACCCTGTTCTATTATTCATGTTTGTG 57.945 34.615 0.00 0.00 0.00 3.33
6805 7070 7.888021 ACCCTGTTCTATTATTCATGTTTGTGA 59.112 33.333 0.00 0.00 0.00 3.58
6806 7071 8.739039 CCCTGTTCTATTATTCATGTTTGTGAA 58.261 33.333 0.00 0.00 41.88 3.18
6807 7072 9.559958 CCTGTTCTATTATTCATGTTTGTGAAC 57.440 33.333 0.00 0.00 40.60 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 7.816640 TGTAGAAAATATGCCACTTTTCTCAC 58.183 34.615 16.03 13.45 44.37 3.51
127 129 2.120232 CGAGCCTATACGCACTCTTTG 58.880 52.381 0.00 0.00 0.00 2.77
128 130 2.493713 CGAGCCTATACGCACTCTTT 57.506 50.000 0.00 0.00 0.00 2.52
163 165 2.858745 TCCCCAAACTAACTGTTGAGC 58.141 47.619 2.69 0.00 39.13 4.26
177 179 6.697641 AACTTCTACACTAGAATTCCCCAA 57.302 37.500 0.65 0.00 43.32 4.12
205 225 9.079239 AGATAATATTCCAGATCCTCCTCTCTA 57.921 37.037 0.00 0.00 0.00 2.43
272 294 4.220602 ACCAAACTGTTTGAAGCAACTCTT 59.779 37.500 29.47 3.06 43.26 2.85
273 295 3.763897 ACCAAACTGTTTGAAGCAACTCT 59.236 39.130 29.47 0.00 43.26 3.24
360 383 5.479375 AGACATGAAAAGTGCATTCATCCTT 59.521 36.000 10.40 0.00 43.72 3.36
431 454 0.446222 CGGCTGGTAAATTCCACACG 59.554 55.000 0.00 0.00 33.55 4.49
496 521 3.723764 CGCCAACGAATTTAATTGATCCG 59.276 43.478 0.00 0.00 43.93 4.18
596 621 5.690464 AATTCACAGAAGCTGAGATAGGT 57.310 39.130 0.82 0.00 39.21 3.08
597 622 6.373774 ACAAAATTCACAGAAGCTGAGATAGG 59.626 38.462 0.82 0.00 31.85 2.57
598 623 7.375106 ACAAAATTCACAGAAGCTGAGATAG 57.625 36.000 0.82 0.00 31.85 2.08
599 624 7.877612 TGTACAAAATTCACAGAAGCTGAGATA 59.122 33.333 0.00 0.00 31.85 1.98
705 731 6.601613 TCATACTTATTCAAAGCCCGAATGTT 59.398 34.615 3.73 0.00 34.89 2.71
725 751 5.153950 ACCAACAGAACTCCTCTTCATAC 57.846 43.478 0.00 0.00 29.07 2.39
730 756 2.749800 GCCAACCAACAGAACTCCTCTT 60.750 50.000 0.00 0.00 29.07 2.85
931 982 6.404342 GTCGCTTTCATTAACTCGTTAATTCG 59.596 38.462 11.29 10.05 42.11 3.34
1057 1108 0.729116 CAATCAAGCGTCGCAGGAAT 59.271 50.000 21.09 6.44 0.00 3.01
1058 1109 0.320334 TCAATCAAGCGTCGCAGGAA 60.320 50.000 21.09 1.84 0.00 3.36
1059 1110 0.320334 TTCAATCAAGCGTCGCAGGA 60.320 50.000 21.09 16.17 0.00 3.86
1060 1111 0.729116 ATTCAATCAAGCGTCGCAGG 59.271 50.000 21.09 10.92 0.00 4.85
1061 1112 2.159667 TCAATTCAATCAAGCGTCGCAG 60.160 45.455 21.09 11.68 0.00 5.18
1062 1113 1.803555 TCAATTCAATCAAGCGTCGCA 59.196 42.857 21.09 0.00 0.00 5.10
1065 1116 4.425577 AGGTTCAATTCAATCAAGCGTC 57.574 40.909 0.00 0.00 0.00 5.19
1066 1117 5.240623 TGTTAGGTTCAATTCAATCAAGCGT 59.759 36.000 0.00 0.00 0.00 5.07
1067 1118 5.698832 TGTTAGGTTCAATTCAATCAAGCG 58.301 37.500 0.00 0.00 0.00 4.68
1068 1119 6.088085 CGTTGTTAGGTTCAATTCAATCAAGC 59.912 38.462 0.00 0.00 0.00 4.01
1069 1120 6.088085 GCGTTGTTAGGTTCAATTCAATCAAG 59.912 38.462 0.00 0.00 0.00 3.02
1070 1121 5.918011 GCGTTGTTAGGTTCAATTCAATCAA 59.082 36.000 0.00 0.00 0.00 2.57
1071 1122 5.457140 GCGTTGTTAGGTTCAATTCAATCA 58.543 37.500 0.00 0.00 0.00 2.57
1072 1123 4.857037 GGCGTTGTTAGGTTCAATTCAATC 59.143 41.667 0.00 0.00 0.00 2.67
1073 1124 4.321675 GGGCGTTGTTAGGTTCAATTCAAT 60.322 41.667 0.00 0.00 0.00 2.57
1074 1125 3.004944 GGGCGTTGTTAGGTTCAATTCAA 59.995 43.478 0.00 0.00 0.00 2.69
1075 1126 2.554893 GGGCGTTGTTAGGTTCAATTCA 59.445 45.455 0.00 0.00 0.00 2.57
1076 1127 2.413634 CGGGCGTTGTTAGGTTCAATTC 60.414 50.000 0.00 0.00 0.00 2.17
1077 1128 1.538075 CGGGCGTTGTTAGGTTCAATT 59.462 47.619 0.00 0.00 0.00 2.32
1129 1180 4.262036 GGATTTGTGGGTTTTGAAGGAGTC 60.262 45.833 0.00 0.00 0.00 3.36
1168 1219 1.474077 CGCTGCCTTTGCTCCTAATTT 59.526 47.619 0.00 0.00 38.71 1.82
1322 1389 0.179225 CCGTTTCTTTCGCCATGACG 60.179 55.000 0.00 0.00 0.00 4.35
1344 1411 0.675837 TGGTCAGACTACCGGACGAG 60.676 60.000 9.46 4.65 42.91 4.18
1539 1606 2.825982 CGTGAGTCCACAACCCCA 59.174 61.111 0.00 0.00 43.34 4.96
1662 1729 5.410746 CACTTCAGTAATGTTGACAGCTGAT 59.589 40.000 23.35 4.35 35.05 2.90
1665 1732 4.512944 CACACTTCAGTAATGTTGACAGCT 59.487 41.667 0.00 0.00 0.00 4.24
1706 1773 4.938080 AGCTAAATCGGAGTACACTGATG 58.062 43.478 14.41 4.84 36.22 3.07
1891 1958 1.618837 GACCAGTGAGCAAGACTACCA 59.381 52.381 0.00 0.00 0.00 3.25
1973 2048 2.714250 TCCATACCAAGTTTGTCCAGGT 59.286 45.455 0.00 0.00 36.40 4.00
2015 2090 9.853177 CCCTATGAAGTAACCTCTTTTTATCAT 57.147 33.333 0.00 0.00 0.00 2.45
2142 2219 2.375174 ACCAGGGATGTGCACTCTTTTA 59.625 45.455 19.41 0.00 0.00 1.52
2152 2229 4.759782 CTTAACTACAGACCAGGGATGTG 58.240 47.826 8.70 2.87 0.00 3.21
2203 2280 7.126398 GCGAAAACTGAACATTATGTATCCTC 58.874 38.462 0.00 0.00 0.00 3.71
2216 2293 1.461888 CGATGACCGCGAAAACTGAAC 60.462 52.381 8.23 0.00 0.00 3.18
2226 2303 0.241213 ATCCTACATCGATGACCGCG 59.759 55.000 31.33 13.13 38.37 6.46
2359 2438 5.128991 AGGTAGACAAGTAAGACAATAGCCC 59.871 44.000 0.00 0.00 0.00 5.19
2594 2675 7.122715 TCCTGTATTAACAAAGCCATATGGTT 58.877 34.615 22.79 14.79 34.49 3.67
2850 2932 7.272978 ACTACAGTATCAATGGTACACATTCC 58.727 38.462 6.43 0.00 46.67 3.01
2887 2969 4.806247 CACGCTAGAAGGATGAACTAAAGG 59.194 45.833 0.00 0.00 0.00 3.11
3495 3577 4.391405 AGAAAACAGGGAGCAAAACTTG 57.609 40.909 0.00 0.00 0.00 3.16
3512 3594 7.198390 CAGCAAAACTTCATGAAGAGAAGAAA 58.802 34.615 36.15 0.00 44.00 2.52
3726 3808 0.948678 TCTTGTGCCCTTGTAAACGC 59.051 50.000 0.00 0.00 0.00 4.84
3863 3945 9.004717 TCATCGGATCTAGTTATTAGACAAGAG 57.995 37.037 0.00 0.00 41.10 2.85
3866 3948 8.029522 GCATCATCGGATCTAGTTATTAGACAA 58.970 37.037 0.00 0.00 41.10 3.18
3927 4009 7.338710 ACATGCCAACTATAGTACAACATCTT 58.661 34.615 5.65 0.00 0.00 2.40
4173 4256 5.126384 TCATCCCACGAAAAGAACTGTTTTT 59.874 36.000 0.00 0.00 29.58 1.94
4189 4272 2.048603 GCAGGCACCTTCATCCCAC 61.049 63.158 0.00 0.00 0.00 4.61
4473 4556 4.287766 ACAGTGAGGGTCTAAACATTCC 57.712 45.455 0.00 0.00 0.00 3.01
4605 4688 8.017418 TGGTCACATATATTGACAGACACATA 57.983 34.615 20.16 0.00 44.47 2.29
4606 4689 6.888105 TGGTCACATATATTGACAGACACAT 58.112 36.000 20.16 0.00 44.47 3.21
4965 5049 5.465532 AGCAGATAGGTATGATCACACAG 57.534 43.478 6.44 0.00 0.00 3.66
4999 5083 7.736447 GGAAGAAATATTCCATCCTACAGTG 57.264 40.000 2.02 0.00 46.77 3.66
5057 5142 4.211125 TCTCATCTTCTTCTATGCGGACT 58.789 43.478 0.00 0.00 0.00 3.85
5067 5152 3.457749 AGGTTGGGGATCTCATCTTCTTC 59.542 47.826 0.00 0.00 0.00 2.87
5078 5163 2.103941 GACTCTCATGAGGTTGGGGATC 59.896 54.545 22.42 5.52 44.29 3.36
5093 5178 3.703921 AGAACCTACTTGGAGGACTCTC 58.296 50.000 5.80 0.00 39.15 3.20
5094 5179 3.837399 AGAACCTACTTGGAGGACTCT 57.163 47.619 5.80 4.42 39.15 3.24
5117 5202 9.533253 CATAAGAAGAGAAAAGGAAAGCAAAAA 57.467 29.630 0.00 0.00 0.00 1.94
5118 5203 8.695456 ACATAAGAAGAGAAAAGGAAAGCAAAA 58.305 29.630 0.00 0.00 0.00 2.44
5122 5207 6.089476 GCACATAAGAAGAGAAAAGGAAAGC 58.911 40.000 0.00 0.00 0.00 3.51
5123 5208 6.073003 ACGCACATAAGAAGAGAAAAGGAAAG 60.073 38.462 0.00 0.00 0.00 2.62
5127 5212 5.613358 AACGCACATAAGAAGAGAAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
5132 5217 4.219944 ACAGGTAACGCACATAAGAAGAGA 59.780 41.667 0.00 0.00 46.39 3.10
5135 5220 3.181520 GCACAGGTAACGCACATAAGAAG 60.182 47.826 0.00 0.00 46.39 2.85
5141 5226 0.250295 ACTGCACAGGTAACGCACAT 60.250 50.000 2.21 0.00 46.39 3.21
5144 5229 0.389757 TACACTGCACAGGTAACGCA 59.610 50.000 2.21 0.00 46.39 5.24
5147 5232 3.057734 GTGAGTACACTGCACAGGTAAC 58.942 50.000 2.21 0.00 42.99 2.50
5149 5234 1.616865 GGTGAGTACACTGCACAGGTA 59.383 52.381 2.21 0.00 45.32 3.08
5152 5237 2.814410 CGGTGAGTACACTGCACAG 58.186 57.895 0.00 0.00 44.70 3.66
5161 5246 3.678548 GGTGAGATGAAAACGGTGAGTAC 59.321 47.826 0.00 0.00 0.00 2.73
5166 5251 1.806542 CCTGGTGAGATGAAAACGGTG 59.193 52.381 0.00 0.00 0.00 4.94
5169 5254 2.472695 TCCCTGGTGAGATGAAAACG 57.527 50.000 0.00 0.00 0.00 3.60
5170 5255 6.621613 GTTTATTCCCTGGTGAGATGAAAAC 58.378 40.000 0.00 0.00 0.00 2.43
5245 5331 3.938963 ACATGGTGTCGCGATAAAAGAAT 59.061 39.130 14.06 0.00 0.00 2.40
5294 5380 1.163554 GCCTCCTCTTCAGCAAACAG 58.836 55.000 0.00 0.00 0.00 3.16
5300 5386 4.847444 GGCCGCCTCCTCTTCAGC 62.847 72.222 0.71 0.00 0.00 4.26
5326 5412 4.563184 CCATCTTCTAGTTTCGAAACCTCG 59.437 45.833 31.87 21.59 46.87 4.63
5503 5623 2.792542 GCATAATGCTTTGCCTCGTGAC 60.793 50.000 0.00 0.00 40.96 3.67
5505 5625 1.132834 TGCATAATGCTTTGCCTCGTG 59.867 47.619 0.00 0.00 45.31 4.35
5536 5657 3.306364 GCTCTAGTATGATCCGGCAATGT 60.306 47.826 0.00 0.00 0.00 2.71
5759 5881 3.900966 TCACATGGGATCAAGAGAGTG 57.099 47.619 0.00 0.00 0.00 3.51
5832 5954 3.243737 ACCAAAAATGAAAAGGCGAGTCC 60.244 43.478 0.00 0.00 0.00 3.85
5910 6033 5.163612 GGTTGCTGTGATCTATCCCTTTTTC 60.164 44.000 0.00 0.00 0.00 2.29
5916 6039 3.209410 CAAGGTTGCTGTGATCTATCCC 58.791 50.000 0.00 0.00 0.00 3.85
5917 6040 3.624861 CACAAGGTTGCTGTGATCTATCC 59.375 47.826 0.00 0.00 45.80 2.59
5926 6055 1.745087 CTCAACACACAAGGTTGCTGT 59.255 47.619 0.00 0.00 44.02 4.40
5939 6068 4.537015 GTGTATCAGTTTTGGCTCAACAC 58.463 43.478 2.84 0.00 0.00 3.32
5966 6101 6.869913 ACTACATCACATTTGCTTCCAATTTG 59.130 34.615 0.00 0.00 0.00 2.32
5971 6106 7.445096 CCATATACTACATCACATTTGCTTCCA 59.555 37.037 0.00 0.00 0.00 3.53
5972 6107 7.445402 ACCATATACTACATCACATTTGCTTCC 59.555 37.037 0.00 0.00 0.00 3.46
5992 6239 9.959749 CAGCGGTACAAAATAAAATTACCATAT 57.040 29.630 0.00 0.00 33.11 1.78
5994 6241 7.832769 ACAGCGGTACAAAATAAAATTACCAT 58.167 30.769 0.00 0.00 33.11 3.55
5997 6244 7.414070 CGACAGCGGTACAAAATAAAATTAC 57.586 36.000 0.00 0.00 0.00 1.89
6021 6268 2.755103 CAGGGACAAAAAGATACAGCCC 59.245 50.000 0.00 0.00 34.52 5.19
6022 6269 2.164422 GCAGGGACAAAAAGATACAGCC 59.836 50.000 0.00 0.00 0.00 4.85
6023 6270 2.159517 CGCAGGGACAAAAAGATACAGC 60.160 50.000 0.00 0.00 0.00 4.40
6024 6271 2.159517 GCGCAGGGACAAAAAGATACAG 60.160 50.000 0.30 0.00 0.00 2.74
6025 6272 1.810151 GCGCAGGGACAAAAAGATACA 59.190 47.619 0.30 0.00 0.00 2.29
6241 6488 7.569639 GCATTATCATCCATGCTGATAAGAT 57.430 36.000 22.65 12.12 44.48 2.40
6250 6497 3.730963 CGATGCAGCATTATCATCCATGC 60.731 47.826 9.90 0.00 45.30 4.06
6375 6626 2.159627 GCTGGTTGTTTCACTACCGATG 59.840 50.000 3.55 0.00 45.08 3.84
6380 6631 5.296035 AGTTAAGTGCTGGTTGTTTCACTAC 59.704 40.000 0.00 0.00 38.68 2.73
6404 6665 7.595819 ATCAACTTGGGTTTGTCTAATTCAA 57.404 32.000 0.00 0.00 32.73 2.69
6414 6675 7.390440 TGAACTATCACTATCAACTTGGGTTTG 59.610 37.037 0.00 0.00 32.73 2.93
6416 6677 7.016153 TGAACTATCACTATCAACTTGGGTT 57.984 36.000 0.00 0.00 35.86 4.11
6453 6714 9.975218 AAGTACTTCCTGAAACCAACAATATAT 57.025 29.630 1.12 0.00 0.00 0.86
6460 6721 5.236695 GTGAGAAGTACTTCCTGAAACCAAC 59.763 44.000 28.05 11.84 40.33 3.77
6471 6732 3.728845 TGGCACAAGTGAGAAGTACTTC 58.271 45.455 25.24 25.24 36.29 3.01
6486 6747 1.152567 CCCAGGACCTTTTGGCACA 60.153 57.895 0.00 0.00 45.59 4.57
6487 6748 0.759060 AACCCAGGACCTTTTGGCAC 60.759 55.000 0.00 0.00 45.59 5.01
6488 6749 0.031616 AAACCCAGGACCTTTTGGCA 60.032 50.000 0.00 0.00 45.59 4.92
6489 6750 0.392706 CAAACCCAGGACCTTTTGGC 59.607 55.000 8.68 0.00 45.59 4.52
6494 6759 1.228154 GCGTCAAACCCAGGACCTT 60.228 57.895 0.00 0.00 0.00 3.50
6529 6794 1.341080 AAACCATTCCCCTGCACAAG 58.659 50.000 0.00 0.00 0.00 3.16
6530 6795 2.243810 GTAAACCATTCCCCTGCACAA 58.756 47.619 0.00 0.00 0.00 3.33
6537 6802 2.502142 ACGAAGGTAAACCATTCCCC 57.498 50.000 1.26 0.00 38.89 4.81
6541 6806 7.222161 GGAGGAATATACGAAGGTAAACCATT 58.778 38.462 1.26 0.00 38.89 3.16
6542 6807 6.239800 GGGAGGAATATACGAAGGTAAACCAT 60.240 42.308 1.26 0.00 38.89 3.55
6543 6808 5.070847 GGGAGGAATATACGAAGGTAAACCA 59.929 44.000 1.26 0.00 38.89 3.67
6544 6809 5.512060 GGGGAGGAATATACGAAGGTAAACC 60.512 48.000 0.00 0.00 31.15 3.27
6545 6810 5.070847 TGGGGAGGAATATACGAAGGTAAAC 59.929 44.000 0.00 0.00 31.15 2.01
6546 6811 5.218179 TGGGGAGGAATATACGAAGGTAAA 58.782 41.667 0.00 0.00 31.15 2.01
6547 6812 4.818447 TGGGGAGGAATATACGAAGGTAA 58.182 43.478 0.00 0.00 31.15 2.85
6548 6813 4.106825 TCTGGGGAGGAATATACGAAGGTA 59.893 45.833 0.00 0.00 0.00 3.08
6549 6814 3.116862 TCTGGGGAGGAATATACGAAGGT 60.117 47.826 0.00 0.00 0.00 3.50
6550 6815 3.258622 GTCTGGGGAGGAATATACGAAGG 59.741 52.174 0.00 0.00 0.00 3.46
6551 6816 3.258622 GGTCTGGGGAGGAATATACGAAG 59.741 52.174 0.00 0.00 0.00 3.79
6552 6817 3.236896 GGTCTGGGGAGGAATATACGAA 58.763 50.000 0.00 0.00 0.00 3.85
6553 6818 2.492196 GGGTCTGGGGAGGAATATACGA 60.492 54.545 0.00 0.00 0.00 3.43
6554 6819 1.900486 GGGTCTGGGGAGGAATATACG 59.100 57.143 0.00 0.00 0.00 3.06
6555 6820 2.267192 GGGGTCTGGGGAGGAATATAC 58.733 57.143 0.00 0.00 0.00 1.47
6556 6821 1.877160 TGGGGTCTGGGGAGGAATATA 59.123 52.381 0.00 0.00 0.00 0.86
6557 6822 0.653397 TGGGGTCTGGGGAGGAATAT 59.347 55.000 0.00 0.00 0.00 1.28
6558 6823 0.327191 GTGGGGTCTGGGGAGGAATA 60.327 60.000 0.00 0.00 0.00 1.75
6559 6824 1.619669 GTGGGGTCTGGGGAGGAAT 60.620 63.158 0.00 0.00 0.00 3.01
6560 6825 2.204090 GTGGGGTCTGGGGAGGAA 60.204 66.667 0.00 0.00 0.00 3.36
6561 6826 4.348495 GGTGGGGTCTGGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
6562 6827 2.898472 CTAGGTGGGGTCTGGGGAGG 62.898 70.000 0.00 0.00 0.00 4.30
6563 6828 1.383248 CTAGGTGGGGTCTGGGGAG 60.383 68.421 0.00 0.00 0.00 4.30
6564 6829 0.856767 TACTAGGTGGGGTCTGGGGA 60.857 60.000 0.00 0.00 0.00 4.81
6565 6830 0.267960 ATACTAGGTGGGGTCTGGGG 59.732 60.000 0.00 0.00 0.00 4.96
6566 6831 1.424638 CATACTAGGTGGGGTCTGGG 58.575 60.000 0.00 0.00 0.00 4.45
6567 6832 1.062428 TCCATACTAGGTGGGGTCTGG 60.062 57.143 14.34 0.00 37.34 3.86
6568 6833 2.320781 CTCCATACTAGGTGGGGTCTG 58.679 57.143 14.34 0.70 37.34 3.51
6569 6834 2.777459 CTCCATACTAGGTGGGGTCT 57.223 55.000 14.34 0.00 37.34 3.85
6572 6837 3.112263 TGAAACTCCATACTAGGTGGGG 58.888 50.000 13.21 13.21 43.14 4.96
6573 6838 4.770795 CTTGAAACTCCATACTAGGTGGG 58.229 47.826 14.34 8.99 37.34 4.61
6574 6839 4.192317 GCTTGAAACTCCATACTAGGTGG 58.808 47.826 9.52 9.52 38.11 4.61
6575 6840 4.832248 TGCTTGAAACTCCATACTAGGTG 58.168 43.478 0.00 0.00 0.00 4.00
6576 6841 5.700402 ATGCTTGAAACTCCATACTAGGT 57.300 39.130 0.00 0.00 0.00 3.08
6577 6842 5.297776 CCAATGCTTGAAACTCCATACTAGG 59.702 44.000 0.00 0.00 0.00 3.02
6578 6843 5.297776 CCCAATGCTTGAAACTCCATACTAG 59.702 44.000 0.00 0.00 0.00 2.57
6579 6844 5.192927 CCCAATGCTTGAAACTCCATACTA 58.807 41.667 0.00 0.00 0.00 1.82
6580 6845 4.019174 CCCAATGCTTGAAACTCCATACT 58.981 43.478 0.00 0.00 0.00 2.12
6581 6846 3.763897 ACCCAATGCTTGAAACTCCATAC 59.236 43.478 0.00 0.00 0.00 2.39
6582 6847 4.016444 GACCCAATGCTTGAAACTCCATA 58.984 43.478 0.00 0.00 0.00 2.74
6583 6848 2.827921 GACCCAATGCTTGAAACTCCAT 59.172 45.455 0.00 0.00 0.00 3.41
6584 6849 2.158475 AGACCCAATGCTTGAAACTCCA 60.158 45.455 0.00 0.00 0.00 3.86
6585 6850 2.229784 CAGACCCAATGCTTGAAACTCC 59.770 50.000 0.00 0.00 0.00 3.85
6586 6851 2.887152 ACAGACCCAATGCTTGAAACTC 59.113 45.455 0.00 0.00 0.00 3.01
6587 6852 2.887152 GACAGACCCAATGCTTGAAACT 59.113 45.455 0.00 0.00 0.00 2.66
6588 6853 2.887152 AGACAGACCCAATGCTTGAAAC 59.113 45.455 0.00 0.00 0.00 2.78
6589 6854 3.228188 AGACAGACCCAATGCTTGAAA 57.772 42.857 0.00 0.00 0.00 2.69
6590 6855 2.957402 AGACAGACCCAATGCTTGAA 57.043 45.000 0.00 0.00 0.00 2.69
6591 6856 2.957402 AAGACAGACCCAATGCTTGA 57.043 45.000 0.00 0.00 0.00 3.02
6592 6857 4.326504 AAAAAGACAGACCCAATGCTTG 57.673 40.909 0.00 0.00 0.00 4.01
6611 6876 8.533569 AAGAAAAGGACAGACCATTCTAAAAA 57.466 30.769 9.36 0.00 42.28 1.94
6612 6877 8.533569 AAAGAAAAGGACAGACCATTCTAAAA 57.466 30.769 9.36 0.00 42.28 1.52
6613 6878 9.807921 ATAAAGAAAAGGACAGACCATTCTAAA 57.192 29.630 9.36 3.72 42.28 1.85
6615 6880 9.886132 GTATAAAGAAAAGGACAGACCATTCTA 57.114 33.333 9.36 0.00 42.28 2.10
6616 6881 8.383175 TGTATAAAGAAAAGGACAGACCATTCT 58.617 33.333 4.78 4.78 43.76 2.40
6617 6882 8.561738 TGTATAAAGAAAAGGACAGACCATTC 57.438 34.615 0.00 0.00 42.04 2.67
6618 6883 7.611855 CCTGTATAAAGAAAAGGACAGACCATT 59.388 37.037 1.51 0.00 42.04 3.16
6619 6884 7.037586 TCCTGTATAAAGAAAAGGACAGACCAT 60.038 37.037 1.51 0.00 42.04 3.55
6620 6885 6.271391 TCCTGTATAAAGAAAAGGACAGACCA 59.729 38.462 1.51 0.00 42.04 4.02
6621 6886 6.708285 TCCTGTATAAAGAAAAGGACAGACC 58.292 40.000 1.51 0.00 37.14 3.85
6622 6887 9.535878 CTATCCTGTATAAAGAAAAGGACAGAC 57.464 37.037 1.51 0.00 39.78 3.51
6623 6888 9.268282 ACTATCCTGTATAAAGAAAAGGACAGA 57.732 33.333 2.47 0.00 39.78 3.41
6624 6889 9.892130 AACTATCCTGTATAAAGAAAAGGACAG 57.108 33.333 0.00 0.00 39.78 3.51
6625 6890 9.667107 CAACTATCCTGTATAAAGAAAAGGACA 57.333 33.333 0.00 0.00 39.78 4.02
6626 6891 9.110502 CCAACTATCCTGTATAAAGAAAAGGAC 57.889 37.037 0.00 0.00 39.78 3.85
6627 6892 7.773690 GCCAACTATCCTGTATAAAGAAAAGGA 59.226 37.037 0.00 0.00 41.16 3.36
6628 6893 7.013369 GGCCAACTATCCTGTATAAAGAAAAGG 59.987 40.741 0.00 0.00 0.00 3.11
6629 6894 7.556275 TGGCCAACTATCCTGTATAAAGAAAAG 59.444 37.037 0.61 0.00 0.00 2.27
6630 6895 7.406916 TGGCCAACTATCCTGTATAAAGAAAA 58.593 34.615 0.61 0.00 0.00 2.29
6631 6896 6.964464 TGGCCAACTATCCTGTATAAAGAAA 58.036 36.000 0.61 0.00 0.00 2.52
6632 6897 6.385759 TCTGGCCAACTATCCTGTATAAAGAA 59.614 38.462 7.01 0.00 0.00 2.52
6633 6898 5.903010 TCTGGCCAACTATCCTGTATAAAGA 59.097 40.000 7.01 0.00 0.00 2.52
6634 6899 5.992217 GTCTGGCCAACTATCCTGTATAAAG 59.008 44.000 7.01 0.00 0.00 1.85
6635 6900 5.665812 AGTCTGGCCAACTATCCTGTATAAA 59.334 40.000 7.01 0.00 0.00 1.40
6636 6901 5.216622 AGTCTGGCCAACTATCCTGTATAA 58.783 41.667 7.01 0.00 0.00 0.98
6637 6902 4.816126 AGTCTGGCCAACTATCCTGTATA 58.184 43.478 7.01 0.00 0.00 1.47
6638 6903 3.658725 AGTCTGGCCAACTATCCTGTAT 58.341 45.455 7.01 0.00 0.00 2.29
6639 6904 3.116096 AGTCTGGCCAACTATCCTGTA 57.884 47.619 7.01 0.00 0.00 2.74
6640 6905 1.958288 AGTCTGGCCAACTATCCTGT 58.042 50.000 7.01 0.00 0.00 4.00
6641 6906 2.636830 CAAGTCTGGCCAACTATCCTG 58.363 52.381 17.41 10.43 0.00 3.86
6642 6907 1.065126 GCAAGTCTGGCCAACTATCCT 60.065 52.381 17.41 3.50 0.00 3.24
6643 6908 1.340017 TGCAAGTCTGGCCAACTATCC 60.340 52.381 17.41 10.99 0.00 2.59
6644 6909 2.012673 CTGCAAGTCTGGCCAACTATC 58.987 52.381 17.41 13.25 0.00 2.08
6645 6910 1.952367 GCTGCAAGTCTGGCCAACTAT 60.952 52.381 17.41 8.23 35.30 2.12
6646 6911 0.606401 GCTGCAAGTCTGGCCAACTA 60.606 55.000 17.41 0.00 35.30 2.24
6647 6912 1.900498 GCTGCAAGTCTGGCCAACT 60.900 57.895 7.01 10.83 35.30 3.16
6648 6913 2.647297 GCTGCAAGTCTGGCCAAC 59.353 61.111 7.01 8.46 35.30 3.77
6649 6914 2.598394 GGCTGCAAGTCTGGCCAA 60.598 61.111 7.01 0.00 43.59 4.52
6654 6919 1.448540 CTACCGGGCTGCAAGTCTG 60.449 63.158 6.32 0.00 46.99 3.51
6655 6920 1.913762 ACTACCGGGCTGCAAGTCT 60.914 57.895 6.32 0.00 39.67 3.24
6656 6921 1.741770 CACTACCGGGCTGCAAGTC 60.742 63.158 6.32 0.00 38.34 3.01
6657 6922 1.553690 ATCACTACCGGGCTGCAAGT 61.554 55.000 6.32 0.00 35.30 3.16
6658 6923 0.464036 TATCACTACCGGGCTGCAAG 59.536 55.000 6.32 0.00 0.00 4.01
6659 6924 0.464036 CTATCACTACCGGGCTGCAA 59.536 55.000 6.32 0.00 0.00 4.08
6660 6925 1.399744 CCTATCACTACCGGGCTGCA 61.400 60.000 6.32 0.00 0.00 4.41
6661 6926 1.113517 TCCTATCACTACCGGGCTGC 61.114 60.000 6.32 0.00 0.00 5.25
6662 6927 1.633774 ATCCTATCACTACCGGGCTG 58.366 55.000 6.32 0.00 0.00 4.85
6663 6928 2.400467 AATCCTATCACTACCGGGCT 57.600 50.000 6.32 0.00 0.00 5.19
6664 6929 4.820894 ATAAATCCTATCACTACCGGGC 57.179 45.455 6.32 0.00 0.00 6.13
6665 6930 6.817140 GCTAAATAAATCCTATCACTACCGGG 59.183 42.308 6.32 0.00 0.00 5.73
6666 6931 7.383687 TGCTAAATAAATCCTATCACTACCGG 58.616 38.462 0.00 0.00 0.00 5.28
6667 6932 8.088981 ACTGCTAAATAAATCCTATCACTACCG 58.911 37.037 0.00 0.00 0.00 4.02
6668 6933 9.780186 AACTGCTAAATAAATCCTATCACTACC 57.220 33.333 0.00 0.00 0.00 3.18
6671 6936 9.905713 TTCAACTGCTAAATAAATCCTATCACT 57.094 29.630 0.00 0.00 0.00 3.41
6673 6938 9.342308 CCTTCAACTGCTAAATAAATCCTATCA 57.658 33.333 0.00 0.00 0.00 2.15
6674 6939 9.561069 TCCTTCAACTGCTAAATAAATCCTATC 57.439 33.333 0.00 0.00 0.00 2.08
6676 6941 9.920946 AATCCTTCAACTGCTAAATAAATCCTA 57.079 29.630 0.00 0.00 0.00 2.94
6677 6942 8.829373 AATCCTTCAACTGCTAAATAAATCCT 57.171 30.769 0.00 0.00 0.00 3.24
6678 6943 9.952188 GTAATCCTTCAACTGCTAAATAAATCC 57.048 33.333 0.00 0.00 0.00 3.01
6683 6948 9.679661 TCATTGTAATCCTTCAACTGCTAAATA 57.320 29.630 0.00 0.00 0.00 1.40
6684 6949 8.579850 TCATTGTAATCCTTCAACTGCTAAAT 57.420 30.769 0.00 0.00 0.00 1.40
6685 6950 7.882791 TCTCATTGTAATCCTTCAACTGCTAAA 59.117 33.333 0.00 0.00 0.00 1.85
6686 6951 7.394016 TCTCATTGTAATCCTTCAACTGCTAA 58.606 34.615 0.00 0.00 0.00 3.09
6687 6952 6.946340 TCTCATTGTAATCCTTCAACTGCTA 58.054 36.000 0.00 0.00 0.00 3.49
6688 6953 5.809001 TCTCATTGTAATCCTTCAACTGCT 58.191 37.500 0.00 0.00 0.00 4.24
6689 6954 6.372659 TCTTCTCATTGTAATCCTTCAACTGC 59.627 38.462 0.00 0.00 0.00 4.40
6690 6955 7.912056 TCTTCTCATTGTAATCCTTCAACTG 57.088 36.000 0.00 0.00 0.00 3.16
6691 6956 8.324306 TGATCTTCTCATTGTAATCCTTCAACT 58.676 33.333 0.00 0.00 0.00 3.16
6692 6957 8.498054 TGATCTTCTCATTGTAATCCTTCAAC 57.502 34.615 0.00 0.00 0.00 3.18
6693 6958 9.117183 CATGATCTTCTCATTGTAATCCTTCAA 57.883 33.333 0.00 0.00 42.07 2.69
6694 6959 8.488668 TCATGATCTTCTCATTGTAATCCTTCA 58.511 33.333 0.00 0.00 42.07 3.02
6695 6960 8.899427 TCATGATCTTCTCATTGTAATCCTTC 57.101 34.615 0.00 0.00 42.07 3.46
6696 6961 9.286170 CATCATGATCTTCTCATTGTAATCCTT 57.714 33.333 4.86 0.00 42.07 3.36
6697 6962 7.390996 GCATCATGATCTTCTCATTGTAATCCT 59.609 37.037 4.86 0.00 42.07 3.24
6698 6963 7.174426 TGCATCATGATCTTCTCATTGTAATCC 59.826 37.037 4.86 0.00 42.07 3.01
6699 6964 8.095937 TGCATCATGATCTTCTCATTGTAATC 57.904 34.615 4.86 0.00 42.07 1.75
6700 6965 8.350722 GTTGCATCATGATCTTCTCATTGTAAT 58.649 33.333 4.86 0.00 42.07 1.89
6701 6966 7.201758 GGTTGCATCATGATCTTCTCATTGTAA 60.202 37.037 4.86 0.00 42.07 2.41
6702 6967 6.261603 GGTTGCATCATGATCTTCTCATTGTA 59.738 38.462 4.86 0.00 42.07 2.41
6703 6968 5.067413 GGTTGCATCATGATCTTCTCATTGT 59.933 40.000 4.86 0.00 42.07 2.71
6704 6969 5.067283 TGGTTGCATCATGATCTTCTCATTG 59.933 40.000 4.86 0.00 42.07 2.82
6705 6970 5.198207 TGGTTGCATCATGATCTTCTCATT 58.802 37.500 4.86 0.00 42.07 2.57
6706 6971 4.788679 TGGTTGCATCATGATCTTCTCAT 58.211 39.130 4.86 0.00 45.78 2.90
6707 6972 4.224991 TGGTTGCATCATGATCTTCTCA 57.775 40.909 4.86 0.00 38.53 3.27
6708 6973 4.397103 TGTTGGTTGCATCATGATCTTCTC 59.603 41.667 4.86 0.00 0.00 2.87
6709 6974 4.157289 GTGTTGGTTGCATCATGATCTTCT 59.843 41.667 4.86 0.00 0.00 2.85
6710 6975 4.418392 GTGTTGGTTGCATCATGATCTTC 58.582 43.478 4.86 0.00 0.00 2.87
6711 6976 3.119743 CGTGTTGGTTGCATCATGATCTT 60.120 43.478 4.86 0.00 0.00 2.40
6712 6977 2.421073 CGTGTTGGTTGCATCATGATCT 59.579 45.455 4.86 0.00 0.00 2.75
6713 6978 2.162208 ACGTGTTGGTTGCATCATGATC 59.838 45.455 4.86 1.82 0.00 2.92
6714 6979 2.095110 CACGTGTTGGTTGCATCATGAT 60.095 45.455 7.58 1.18 0.00 2.45
6715 6980 1.266446 CACGTGTTGGTTGCATCATGA 59.734 47.619 7.58 0.00 0.00 3.07
6716 6981 1.666599 CCACGTGTTGGTTGCATCATG 60.667 52.381 15.65 0.00 41.10 3.07
6717 6982 0.597568 CCACGTGTTGGTTGCATCAT 59.402 50.000 15.65 0.00 41.10 2.45
6718 6983 2.028936 CCACGTGTTGGTTGCATCA 58.971 52.632 15.65 0.00 41.10 3.07
6719 6984 4.942090 CCACGTGTTGGTTGCATC 57.058 55.556 15.65 0.00 41.10 3.91
6733 6998 3.428589 GGTAGAACGGATGTGAGTACCAC 60.429 52.174 7.34 7.34 45.88 4.16
6734 6999 2.756760 GGTAGAACGGATGTGAGTACCA 59.243 50.000 0.00 0.00 32.53 3.25
6735 7000 2.223433 CGGTAGAACGGATGTGAGTACC 60.223 54.545 0.00 0.00 0.00 3.34
6736 7001 2.421424 ACGGTAGAACGGATGTGAGTAC 59.579 50.000 0.00 0.00 38.39 2.73
6737 7002 2.715046 ACGGTAGAACGGATGTGAGTA 58.285 47.619 0.00 0.00 38.39 2.59
6738 7003 1.542492 ACGGTAGAACGGATGTGAGT 58.458 50.000 0.00 0.00 38.39 3.41
6739 7004 3.770263 TTACGGTAGAACGGATGTGAG 57.230 47.619 0.00 0.00 38.39 3.51
6740 7005 4.724074 AATTACGGTAGAACGGATGTGA 57.276 40.909 0.00 0.00 38.39 3.58
6741 7006 5.051240 GCTTAATTACGGTAGAACGGATGTG 60.051 44.000 0.00 0.00 38.39 3.21
6742 7007 5.045872 GCTTAATTACGGTAGAACGGATGT 58.954 41.667 0.00 0.00 38.39 3.06
6743 7008 5.287226 AGCTTAATTACGGTAGAACGGATG 58.713 41.667 0.00 0.00 38.39 3.51
6744 7009 5.526506 AGCTTAATTACGGTAGAACGGAT 57.473 39.130 0.00 0.00 38.39 4.18
6745 7010 4.989279 AGCTTAATTACGGTAGAACGGA 57.011 40.909 0.00 0.00 38.39 4.69
6746 7011 5.456822 GTGTAGCTTAATTACGGTAGAACGG 59.543 44.000 0.00 0.00 38.39 4.44
6747 7012 6.261118 AGTGTAGCTTAATTACGGTAGAACG 58.739 40.000 0.00 0.00 40.31 3.95
6748 7013 9.178427 CATAGTGTAGCTTAATTACGGTAGAAC 57.822 37.037 0.00 4.22 0.00 3.01
6749 7014 8.906867 ACATAGTGTAGCTTAATTACGGTAGAA 58.093 33.333 0.00 0.00 0.00 2.10
6750 7015 8.347771 CACATAGTGTAGCTTAATTACGGTAGA 58.652 37.037 0.00 0.00 0.00 2.59
6751 7016 7.114529 GCACATAGTGTAGCTTAATTACGGTAG 59.885 40.741 0.00 0.00 35.75 3.18
6752 7017 6.919662 GCACATAGTGTAGCTTAATTACGGTA 59.080 38.462 0.00 0.00 35.75 4.02
6753 7018 5.751990 GCACATAGTGTAGCTTAATTACGGT 59.248 40.000 0.00 0.00 35.75 4.83
6754 7019 5.751509 TGCACATAGTGTAGCTTAATTACGG 59.248 40.000 0.00 0.00 35.75 4.02
6755 7020 6.822073 TGCACATAGTGTAGCTTAATTACG 57.178 37.500 0.00 0.00 35.75 3.18
6756 7021 7.407337 GGTTGCACATAGTGTAGCTTAATTAC 58.593 38.462 0.00 0.00 35.75 1.89
6757 7022 6.540914 GGGTTGCACATAGTGTAGCTTAATTA 59.459 38.462 0.00 0.00 35.75 1.40
6758 7023 5.357032 GGGTTGCACATAGTGTAGCTTAATT 59.643 40.000 0.00 0.00 35.75 1.40
6759 7024 4.881850 GGGTTGCACATAGTGTAGCTTAAT 59.118 41.667 0.00 0.00 35.75 1.40
6760 7025 4.019681 AGGGTTGCACATAGTGTAGCTTAA 60.020 41.667 0.00 0.00 35.75 1.85
6761 7026 3.517901 AGGGTTGCACATAGTGTAGCTTA 59.482 43.478 0.00 0.00 35.75 3.09
6762 7027 2.305927 AGGGTTGCACATAGTGTAGCTT 59.694 45.455 0.00 0.00 35.75 3.74
6763 7028 1.909302 AGGGTTGCACATAGTGTAGCT 59.091 47.619 0.00 0.00 35.75 3.32
6764 7029 2.009774 CAGGGTTGCACATAGTGTAGC 58.990 52.381 0.00 0.00 35.75 3.58
6765 7030 3.334583 ACAGGGTTGCACATAGTGTAG 57.665 47.619 0.00 0.00 35.75 2.74
6766 7031 3.326588 AGAACAGGGTTGCACATAGTGTA 59.673 43.478 0.00 0.00 35.75 2.90
6767 7032 2.106511 AGAACAGGGTTGCACATAGTGT 59.893 45.455 0.00 0.00 35.75 3.55
6768 7033 2.783135 AGAACAGGGTTGCACATAGTG 58.217 47.619 0.00 0.00 36.51 2.74
6769 7034 4.844349 ATAGAACAGGGTTGCACATAGT 57.156 40.909 0.00 0.00 0.00 2.12
6770 7035 7.498900 TGAATAATAGAACAGGGTTGCACATAG 59.501 37.037 0.00 0.00 0.00 2.23
6771 7036 7.342581 TGAATAATAGAACAGGGTTGCACATA 58.657 34.615 0.00 0.00 0.00 2.29
6772 7037 6.186957 TGAATAATAGAACAGGGTTGCACAT 58.813 36.000 0.00 0.00 0.00 3.21
6773 7038 5.565509 TGAATAATAGAACAGGGTTGCACA 58.434 37.500 0.00 0.00 0.00 4.57
6774 7039 6.095440 ACATGAATAATAGAACAGGGTTGCAC 59.905 38.462 0.00 0.00 0.00 4.57
6775 7040 6.186957 ACATGAATAATAGAACAGGGTTGCA 58.813 36.000 0.00 0.00 0.00 4.08
6776 7041 6.699575 ACATGAATAATAGAACAGGGTTGC 57.300 37.500 0.00 0.00 0.00 4.17
6777 7042 8.522830 ACAAACATGAATAATAGAACAGGGTTG 58.477 33.333 0.00 0.00 43.85 3.77
6778 7043 8.522830 CACAAACATGAATAATAGAACAGGGTT 58.477 33.333 0.00 0.00 0.00 4.11
6779 7044 7.888021 TCACAAACATGAATAATAGAACAGGGT 59.112 33.333 0.00 0.00 0.00 4.34
6780 7045 8.279970 TCACAAACATGAATAATAGAACAGGG 57.720 34.615 0.00 0.00 0.00 4.45
6781 7046 9.559958 GTTCACAAACATGAATAATAGAACAGG 57.440 33.333 0.00 0.00 40.60 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.