Multiple sequence alignment - TraesCS4A01G013600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G013600 chr4A 100.000 2963 0 0 1 2963 7750995 7748033 0.000000e+00 5472.0
1 TraesCS4A01G013600 chr4D 93.346 2570 80 27 441 2963 460479180 460481705 0.000000e+00 3714.0
2 TraesCS4A01G013600 chr4D 82.911 158 23 3 1060 1216 467949928 467949774 3.980000e-29 139.0
3 TraesCS4A01G013600 chr4B 91.463 1476 55 29 519 1976 574948427 574949849 0.000000e+00 1962.0
4 TraesCS4A01G013600 chr4B 93.369 935 39 14 2051 2963 574949884 574950817 0.000000e+00 1362.0
5 TraesCS4A01G013600 chr4B 90.837 251 18 3 8 256 258765508 258765261 6.120000e-87 331.0
6 TraesCS4A01G013600 chr5D 92.969 256 16 2 3 256 438807264 438807519 3.610000e-99 372.0
7 TraesCS4A01G013600 chr1D 92.188 256 18 2 3 256 483883550 483883805 7.810000e-96 361.0
8 TraesCS4A01G013600 chr1D 90.196 255 22 3 3 256 416665299 416665551 2.200000e-86 329.0
9 TraesCS4A01G013600 chr1D 92.754 69 5 0 326 394 97132470 97132538 1.880000e-17 100.0
10 TraesCS4A01G013600 chr7D 91.829 257 18 3 3 256 5465687 5465431 3.630000e-94 355.0
11 TraesCS4A01G013600 chr5A 91.797 256 19 2 3 256 436606311 436606056 3.630000e-94 355.0
12 TraesCS4A01G013600 chr3D 90.385 260 23 2 3 260 593675006 593674747 1.020000e-89 340.0
13 TraesCS4A01G013600 chr3D 90.400 250 23 1 3 251 285783905 285784154 7.920000e-86 327.0
14 TraesCS4A01G013600 chr3A 90.234 256 23 2 3 256 722499185 722498930 1.700000e-87 333.0
15 TraesCS4A01G013600 chr2A 86.364 132 18 0 1080 1211 738921993 738922124 8.560000e-31 145.0
16 TraesCS4A01G013600 chr2A 88.333 60 7 0 329 388 476398534 476398475 4.100000e-09 73.1
17 TraesCS4A01G013600 chr2D 84.848 132 20 0 1080 1211 607283912 607284043 1.850000e-27 134.0
18 TraesCS4A01G013600 chr2B 83.333 132 22 0 1080 1211 739369408 739369277 4.010000e-24 122.0
19 TraesCS4A01G013600 chr7A 81.679 131 19 4 326 456 634877712 634877837 1.450000e-18 104.0
20 TraesCS4A01G013600 chr6A 100.000 28 0 0 340 367 82117726 82117699 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G013600 chr4A 7748033 7750995 2962 True 5472 5472 100.000 1 2963 1 chr4A.!!$R1 2962
1 TraesCS4A01G013600 chr4D 460479180 460481705 2525 False 3714 3714 93.346 441 2963 1 chr4D.!!$F1 2522
2 TraesCS4A01G013600 chr4B 574948427 574950817 2390 False 1662 1962 92.416 519 2963 2 chr4B.!!$F1 2444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 693 0.173935 CGTGCCAACATGCATCCATT 59.826 50.0 0.0 0.0 44.3 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2362 2423 1.615392 GCTGAATGCTTTCTTGTGGGT 59.385 47.619 12.96 0.0 38.95 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.772568 TGTTTTGGCATGAACTCACG 57.227 45.000 13.26 0.00 0.00 4.35
27 28 1.268999 TGTTTTGGCATGAACTCACGC 60.269 47.619 13.26 0.00 33.82 5.34
31 32 3.909662 GCATGAACTCACGCCCAT 58.090 55.556 0.00 0.00 0.00 4.00
32 33 1.430632 GCATGAACTCACGCCCATG 59.569 57.895 0.00 0.00 39.35 3.66
33 34 1.308069 GCATGAACTCACGCCCATGT 61.308 55.000 0.00 0.00 38.78 3.21
34 35 1.167851 CATGAACTCACGCCCATGTT 58.832 50.000 0.00 0.00 33.62 2.71
35 36 1.135603 CATGAACTCACGCCCATGTTG 60.136 52.381 0.00 0.00 33.62 3.33
36 37 0.888736 TGAACTCACGCCCATGTTGG 60.889 55.000 0.00 0.00 37.25 3.77
49 50 4.114058 CCATGTTGGGTATCTGCAAAAG 57.886 45.455 0.00 0.00 32.67 2.27
50 51 3.119029 CCATGTTGGGTATCTGCAAAAGG 60.119 47.826 0.00 0.00 32.67 3.11
51 52 3.237268 TGTTGGGTATCTGCAAAAGGT 57.763 42.857 0.00 0.00 0.00 3.50
52 53 2.890311 TGTTGGGTATCTGCAAAAGGTG 59.110 45.455 0.00 0.00 0.00 4.00
53 54 2.890945 GTTGGGTATCTGCAAAAGGTGT 59.109 45.455 0.00 0.00 0.00 4.16
54 55 2.513753 TGGGTATCTGCAAAAGGTGTG 58.486 47.619 0.00 0.00 0.00 3.82
55 56 1.202348 GGGTATCTGCAAAAGGTGTGC 59.798 52.381 0.00 0.00 42.55 4.57
56 57 1.202348 GGTATCTGCAAAAGGTGTGCC 59.798 52.381 0.00 0.00 41.49 5.01
69 70 4.222124 AGGTGTGCCTTTACTATTGAGG 57.778 45.455 0.00 0.00 44.18 3.86
70 71 3.054361 AGGTGTGCCTTTACTATTGAGGG 60.054 47.826 0.00 0.00 44.18 4.30
71 72 3.279434 GTGTGCCTTTACTATTGAGGGG 58.721 50.000 0.00 0.00 0.00 4.79
72 73 3.054655 GTGTGCCTTTACTATTGAGGGGA 60.055 47.826 0.00 0.00 0.00 4.81
73 74 3.785887 TGTGCCTTTACTATTGAGGGGAT 59.214 43.478 0.00 0.00 0.00 3.85
74 75 4.229582 TGTGCCTTTACTATTGAGGGGATT 59.770 41.667 0.00 0.00 0.00 3.01
75 76 5.201243 GTGCCTTTACTATTGAGGGGATTT 58.799 41.667 0.00 0.00 0.00 2.17
76 77 5.299531 GTGCCTTTACTATTGAGGGGATTTC 59.700 44.000 0.00 0.00 0.00 2.17
77 78 5.044476 TGCCTTTACTATTGAGGGGATTTCA 60.044 40.000 0.00 0.00 0.00 2.69
78 79 5.891551 GCCTTTACTATTGAGGGGATTTCAA 59.108 40.000 0.00 0.00 38.76 2.69
79 80 6.551227 GCCTTTACTATTGAGGGGATTTCAAT 59.449 38.462 5.86 5.86 44.86 2.57
80 81 7.255625 GCCTTTACTATTGAGGGGATTTCAATC 60.256 40.741 3.95 0.00 42.58 2.67
81 82 7.779798 CCTTTACTATTGAGGGGATTTCAATCA 59.220 37.037 3.95 0.00 42.58 2.57
82 83 9.189156 CTTTACTATTGAGGGGATTTCAATCAA 57.811 33.333 3.95 0.00 42.58 2.57
83 84 9.540538 TTTACTATTGAGGGGATTTCAATCAAA 57.459 29.630 3.95 2.47 42.58 2.69
84 85 7.410120 ACTATTGAGGGGATTTCAATCAAAC 57.590 36.000 3.95 0.00 42.58 2.93
85 86 4.782019 TTGAGGGGATTTCAATCAAACG 57.218 40.909 2.04 0.00 37.15 3.60
86 87 4.027674 TGAGGGGATTTCAATCAAACGA 57.972 40.909 2.04 0.00 37.15 3.85
87 88 4.599041 TGAGGGGATTTCAATCAAACGAT 58.401 39.130 2.04 0.00 37.15 3.73
88 89 4.398988 TGAGGGGATTTCAATCAAACGATG 59.601 41.667 2.04 0.00 37.15 3.84
89 90 3.701040 AGGGGATTTCAATCAAACGATGG 59.299 43.478 2.04 0.00 37.15 3.51
90 91 3.181476 GGGGATTTCAATCAAACGATGGG 60.181 47.826 2.04 0.00 37.15 4.00
91 92 3.447229 GGGATTTCAATCAAACGATGGGT 59.553 43.478 2.04 0.00 37.15 4.51
92 93 4.081697 GGGATTTCAATCAAACGATGGGTT 60.082 41.667 2.04 0.00 37.15 4.11
93 94 5.102313 GGATTTCAATCAAACGATGGGTTC 58.898 41.667 2.04 0.00 37.15 3.62
94 95 4.513198 TTTCAATCAAACGATGGGTTCC 57.487 40.909 0.00 0.00 38.08 3.62
95 96 3.147553 TCAATCAAACGATGGGTTCCA 57.852 42.857 0.00 0.00 38.08 3.53
96 97 3.081061 TCAATCAAACGATGGGTTCCAG 58.919 45.455 0.00 0.00 38.08 3.86
97 98 2.128771 ATCAAACGATGGGTTCCAGG 57.871 50.000 0.00 0.00 38.08 4.45
98 99 0.768622 TCAAACGATGGGTTCCAGGT 59.231 50.000 0.00 0.00 38.08 4.00
99 100 1.979308 TCAAACGATGGGTTCCAGGTA 59.021 47.619 0.00 0.00 38.08 3.08
100 101 2.574369 TCAAACGATGGGTTCCAGGTAT 59.426 45.455 0.00 0.00 38.08 2.73
101 102 2.943033 CAAACGATGGGTTCCAGGTATC 59.057 50.000 0.00 0.00 38.08 2.24
102 103 1.129058 ACGATGGGTTCCAGGTATCC 58.871 55.000 0.00 0.00 36.75 2.59
103 104 1.128200 CGATGGGTTCCAGGTATCCA 58.872 55.000 0.00 0.00 36.75 3.41
104 105 1.488812 CGATGGGTTCCAGGTATCCAA 59.511 52.381 1.40 0.00 36.75 3.53
105 106 2.092646 CGATGGGTTCCAGGTATCCAAA 60.093 50.000 1.40 0.00 36.75 3.28
106 107 3.623703 CGATGGGTTCCAGGTATCCAAAA 60.624 47.826 1.40 0.00 36.75 2.44
107 108 3.905493 TGGGTTCCAGGTATCCAAAAA 57.095 42.857 0.00 0.00 0.00 1.94
108 109 3.773560 TGGGTTCCAGGTATCCAAAAAG 58.226 45.455 0.00 0.00 0.00 2.27
109 110 3.141272 TGGGTTCCAGGTATCCAAAAAGT 59.859 43.478 0.00 0.00 0.00 2.66
110 111 4.354387 TGGGTTCCAGGTATCCAAAAAGTA 59.646 41.667 0.00 0.00 0.00 2.24
111 112 5.015817 TGGGTTCCAGGTATCCAAAAAGTAT 59.984 40.000 0.00 0.00 0.00 2.12
112 113 5.593095 GGGTTCCAGGTATCCAAAAAGTATC 59.407 44.000 0.00 0.00 0.00 2.24
113 114 5.296035 GGTTCCAGGTATCCAAAAAGTATCG 59.704 44.000 0.00 0.00 0.00 2.92
114 115 5.687166 TCCAGGTATCCAAAAAGTATCGT 57.313 39.130 0.00 0.00 0.00 3.73
115 116 6.795144 TCCAGGTATCCAAAAAGTATCGTA 57.205 37.500 0.00 0.00 0.00 3.43
116 117 6.812998 TCCAGGTATCCAAAAAGTATCGTAG 58.187 40.000 0.00 0.00 0.00 3.51
117 118 6.608405 TCCAGGTATCCAAAAAGTATCGTAGA 59.392 38.462 0.00 0.00 45.75 2.59
118 119 7.124599 TCCAGGTATCCAAAAAGTATCGTAGAA 59.875 37.037 0.00 0.00 43.58 2.10
119 120 7.438459 CCAGGTATCCAAAAAGTATCGTAGAAG 59.562 40.741 0.00 0.00 43.58 2.85
120 121 7.980099 CAGGTATCCAAAAAGTATCGTAGAAGT 59.020 37.037 0.00 0.00 43.58 3.01
121 122 9.193806 AGGTATCCAAAAAGTATCGTAGAAGTA 57.806 33.333 0.00 0.00 43.58 2.24
122 123 9.978044 GGTATCCAAAAAGTATCGTAGAAGTAT 57.022 33.333 0.00 0.00 43.58 2.12
125 126 8.302515 TCCAAAAAGTATCGTAGAAGTATCCT 57.697 34.615 0.00 0.00 43.58 3.24
126 127 9.412460 TCCAAAAAGTATCGTAGAAGTATCCTA 57.588 33.333 0.00 0.00 43.58 2.94
127 128 9.680315 CCAAAAAGTATCGTAGAAGTATCCTAG 57.320 37.037 0.00 0.00 43.58 3.02
128 129 9.680315 CAAAAAGTATCGTAGAAGTATCCTAGG 57.320 37.037 0.82 0.82 43.58 3.02
129 130 9.638176 AAAAAGTATCGTAGAAGTATCCTAGGA 57.362 33.333 15.46 15.46 43.58 2.94
130 131 8.851541 AAAGTATCGTAGAAGTATCCTAGGAG 57.148 38.462 18.34 0.00 43.58 3.69
131 132 7.557875 AGTATCGTAGAAGTATCCTAGGAGT 57.442 40.000 18.34 8.16 43.58 3.85
132 133 8.663209 AGTATCGTAGAAGTATCCTAGGAGTA 57.337 38.462 18.34 7.18 43.58 2.59
133 134 9.270707 AGTATCGTAGAAGTATCCTAGGAGTAT 57.729 37.037 18.34 2.82 43.58 2.12
134 135 9.533253 GTATCGTAGAAGTATCCTAGGAGTATC 57.467 40.741 18.34 12.25 43.58 2.24
135 136 7.550597 TCGTAGAAGTATCCTAGGAGTATCA 57.449 40.000 18.34 0.00 36.25 2.15
136 137 7.971201 TCGTAGAAGTATCCTAGGAGTATCAA 58.029 38.462 18.34 0.00 36.25 2.57
137 138 8.435187 TCGTAGAAGTATCCTAGGAGTATCAAA 58.565 37.037 18.34 0.00 36.25 2.69
138 139 8.505625 CGTAGAAGTATCCTAGGAGTATCAAAC 58.494 40.741 18.34 9.57 36.25 2.93
139 140 9.352191 GTAGAAGTATCCTAGGAGTATCAAACA 57.648 37.037 18.34 0.00 36.25 2.83
141 142 9.440761 AGAAGTATCCTAGGAGTATCAAACATT 57.559 33.333 18.34 0.00 36.25 2.71
184 185 5.703730 AAAATCAAGGGATACTTACGGGA 57.296 39.130 0.00 0.00 37.29 5.14
185 186 5.906772 AAATCAAGGGATACTTACGGGAT 57.093 39.130 0.00 0.00 37.29 3.85
186 187 7.383156 AAAATCAAGGGATACTTACGGGATA 57.617 36.000 0.00 0.00 37.29 2.59
187 188 5.997384 ATCAAGGGATACTTACGGGATAC 57.003 43.478 0.00 0.00 37.29 2.24
188 189 3.822735 TCAAGGGATACTTACGGGATACG 59.177 47.826 0.00 0.00 42.95 3.06
189 190 5.984333 ATCAAGGGATACTTACGGGATACGT 60.984 44.000 0.00 0.00 44.55 3.57
190 191 6.748045 ATCAAGGGATACTTACGGGATACGTA 60.748 42.308 0.00 0.00 46.44 3.57
191 192 8.019925 ATCAAGGGATACTTACGGGATACGTAT 61.020 40.741 8.05 8.05 46.44 3.06
198 199 1.211969 CGGGATACGTATCAGGCCG 59.788 63.158 31.03 28.52 37.93 6.13
199 200 1.521450 CGGGATACGTATCAGGCCGT 61.521 60.000 31.03 0.00 40.87 5.68
200 201 1.538047 GGGATACGTATCAGGCCGTA 58.462 55.000 31.03 0.00 42.95 4.02
214 215 1.590147 CCGTATCGGGGCAGTATCC 59.410 63.158 0.00 0.00 44.15 2.59
215 216 1.211969 CGTATCGGGGCAGTATCCG 59.788 63.158 0.00 0.00 46.89 4.18
216 217 1.590147 GTATCGGGGCAGTATCCGG 59.410 63.158 0.00 0.00 45.69 5.14
217 218 2.280552 TATCGGGGCAGTATCCGGC 61.281 63.158 0.00 0.00 45.69 6.13
218 219 2.725127 TATCGGGGCAGTATCCGGCT 62.725 60.000 0.00 0.00 45.69 5.52
219 220 4.609018 CGGGGCAGTATCCGGCTG 62.609 72.222 0.00 0.00 42.32 4.85
220 221 4.256180 GGGGCAGTATCCGGCTGG 62.256 72.222 4.71 4.71 34.73 4.85
233 234 3.564027 GCTGGATACGCGCGCTTT 61.564 61.111 32.58 18.37 42.51 3.51
234 235 2.621000 CTGGATACGCGCGCTTTC 59.379 61.111 32.58 22.91 42.51 2.62
235 236 2.871427 CTGGATACGCGCGCTTTCC 61.871 63.158 32.58 30.29 42.51 3.13
236 237 3.984765 GGATACGCGCGCTTTCCG 61.985 66.667 32.58 15.76 40.75 4.30
237 238 2.952783 GATACGCGCGCTTTCCGA 60.953 61.111 32.58 4.61 40.02 4.55
238 239 2.507547 ATACGCGCGCTTTCCGAA 60.508 55.556 32.58 4.16 40.02 4.30
239 240 2.398800 GATACGCGCGCTTTCCGAAG 62.399 60.000 32.58 13.34 40.02 3.79
240 241 3.902162 TACGCGCGCTTTCCGAAGT 62.902 57.895 32.58 18.71 40.02 3.01
241 242 2.526091 TACGCGCGCTTTCCGAAGTA 62.526 55.000 32.58 17.62 40.02 2.24
242 243 2.514013 CGCGCGCTTTCCGAAGTAT 61.514 57.895 30.48 0.00 40.02 2.12
243 244 1.273007 GCGCGCTTTCCGAAGTATC 59.727 57.895 26.67 0.00 40.02 2.24
244 245 1.925052 CGCGCTTTCCGAAGTATCC 59.075 57.895 5.56 0.00 40.02 2.59
245 246 1.808234 CGCGCTTTCCGAAGTATCCG 61.808 60.000 5.56 0.00 40.02 4.18
246 247 1.925052 CGCTTTCCGAAGTATCCGC 59.075 57.895 0.00 0.00 40.02 5.54
247 248 1.808234 CGCTTTCCGAAGTATCCGCG 61.808 60.000 0.00 0.00 40.02 6.46
248 249 1.925052 CTTTCCGAAGTATCCGCGC 59.075 57.895 0.00 0.00 0.00 6.86
249 250 0.804544 CTTTCCGAAGTATCCGCGCA 60.805 55.000 8.75 0.00 0.00 6.09
250 251 0.390078 TTTCCGAAGTATCCGCGCAA 60.390 50.000 8.75 0.00 0.00 4.85
251 252 1.079875 TTCCGAAGTATCCGCGCAAC 61.080 55.000 8.75 0.00 0.00 4.17
252 253 2.613486 CGAAGTATCCGCGCAACG 59.387 61.111 8.75 0.00 43.15 4.10
253 254 2.156446 CGAAGTATCCGCGCAACGT 61.156 57.895 8.75 0.00 41.42 3.99
254 255 0.862701 CGAAGTATCCGCGCAACGTA 60.863 55.000 8.75 0.00 41.42 3.57
255 256 0.844503 GAAGTATCCGCGCAACGTAG 59.155 55.000 8.75 0.00 41.42 3.51
256 257 0.452987 AAGTATCCGCGCAACGTAGA 59.547 50.000 8.75 0.00 41.42 2.59
257 258 0.248377 AGTATCCGCGCAACGTAGAC 60.248 55.000 8.75 0.00 41.42 2.59
258 259 1.297819 TATCCGCGCAACGTAGACG 60.298 57.895 8.75 0.00 46.33 4.18
259 260 1.704387 TATCCGCGCAACGTAGACGA 61.704 55.000 8.75 0.00 43.02 4.20
260 261 3.530104 CCGCGCAACGTAGACGAC 61.530 66.667 8.75 0.00 43.02 4.34
270 271 2.784712 GTAGACGACGATGATGGCG 58.215 57.895 0.00 0.00 0.00 5.69
271 272 0.660595 GTAGACGACGATGATGGCGG 60.661 60.000 0.00 0.00 0.00 6.13
272 273 2.402282 TAGACGACGATGATGGCGGC 62.402 60.000 0.00 0.00 0.00 6.53
275 276 3.330853 GACGATGATGGCGGCGAC 61.331 66.667 12.98 9.31 0.00 5.19
276 277 4.141965 ACGATGATGGCGGCGACA 62.142 61.111 21.84 21.84 0.00 4.35
277 278 2.889988 CGATGATGGCGGCGACAA 60.890 61.111 23.82 3.79 0.00 3.18
278 279 2.709475 GATGATGGCGGCGACAAC 59.291 61.111 23.82 19.95 0.00 3.32
279 280 3.155470 GATGATGGCGGCGACAACG 62.155 63.158 23.82 0.00 42.93 4.10
280 281 3.657448 ATGATGGCGGCGACAACGA 62.657 57.895 23.82 8.70 42.66 3.85
281 282 3.849953 GATGGCGGCGACAACGAC 61.850 66.667 23.82 8.28 45.02 4.34
294 295 6.230460 GCGACAACGACATATTTTGAATTC 57.770 37.500 0.00 0.00 42.66 2.17
295 296 5.792962 GCGACAACGACATATTTTGAATTCA 59.207 36.000 3.38 3.38 42.66 2.57
296 297 6.468956 GCGACAACGACATATTTTGAATTCAT 59.531 34.615 9.40 0.00 42.66 2.57
297 298 7.511965 GCGACAACGACATATTTTGAATTCATG 60.512 37.037 9.40 6.71 42.66 3.07
298 299 7.481483 CGACAACGACATATTTTGAATTCATGT 59.519 33.333 9.40 10.11 42.66 3.21
299 300 9.128107 GACAACGACATATTTTGAATTCATGTT 57.872 29.630 9.40 0.00 30.25 2.71
300 301 9.128107 ACAACGACATATTTTGAATTCATGTTC 57.872 29.630 9.40 4.29 30.25 3.18
301 302 9.345517 CAACGACATATTTTGAATTCATGTTCT 57.654 29.630 9.40 0.00 30.25 3.01
312 313 8.870160 TTGAATTCATGTTCTAACTTTTGTGG 57.130 30.769 9.40 0.00 0.00 4.17
313 314 8.231692 TGAATTCATGTTCTAACTTTTGTGGA 57.768 30.769 3.38 0.00 0.00 4.02
314 315 8.859090 TGAATTCATGTTCTAACTTTTGTGGAT 58.141 29.630 3.38 0.00 0.00 3.41
315 316 9.346725 GAATTCATGTTCTAACTTTTGTGGATC 57.653 33.333 0.00 0.00 0.00 3.36
316 317 6.817765 TCATGTTCTAACTTTTGTGGATCC 57.182 37.500 4.20 4.20 0.00 3.36
317 318 6.542821 TCATGTTCTAACTTTTGTGGATCCT 58.457 36.000 14.23 0.00 0.00 3.24
318 319 6.655003 TCATGTTCTAACTTTTGTGGATCCTC 59.345 38.462 14.23 10.39 0.00 3.71
319 320 6.187727 TGTTCTAACTTTTGTGGATCCTCT 57.812 37.500 14.23 0.00 0.00 3.69
320 321 7.311092 TGTTCTAACTTTTGTGGATCCTCTA 57.689 36.000 14.23 3.28 0.00 2.43
321 322 7.741785 TGTTCTAACTTTTGTGGATCCTCTAA 58.258 34.615 14.23 9.93 0.00 2.10
322 323 8.215050 TGTTCTAACTTTTGTGGATCCTCTAAA 58.785 33.333 14.23 16.69 0.00 1.85
323 324 9.063615 GTTCTAACTTTTGTGGATCCTCTAAAA 57.936 33.333 19.25 17.32 0.00 1.52
324 325 9.807921 TTCTAACTTTTGTGGATCCTCTAAAAT 57.192 29.630 19.25 10.64 0.00 1.82
325 326 9.807921 TCTAACTTTTGTGGATCCTCTAAAATT 57.192 29.630 19.25 18.13 0.00 1.82
331 332 8.533569 TTTGTGGATCCTCTAAAATTATTCCC 57.466 34.615 14.23 0.00 0.00 3.97
332 333 7.465900 TGTGGATCCTCTAAAATTATTCCCT 57.534 36.000 14.23 0.00 0.00 4.20
333 334 7.518188 TGTGGATCCTCTAAAATTATTCCCTC 58.482 38.462 14.23 0.00 0.00 4.30
334 335 7.350921 TGTGGATCCTCTAAAATTATTCCCTCT 59.649 37.037 14.23 0.00 0.00 3.69
335 336 7.663493 GTGGATCCTCTAAAATTATTCCCTCTG 59.337 40.741 14.23 0.00 0.00 3.35
336 337 7.350921 TGGATCCTCTAAAATTATTCCCTCTGT 59.649 37.037 14.23 0.00 0.00 3.41
337 338 8.221251 GGATCCTCTAAAATTATTCCCTCTGTT 58.779 37.037 3.84 0.00 0.00 3.16
338 339 9.634021 GATCCTCTAAAATTATTCCCTCTGTTT 57.366 33.333 0.00 0.00 0.00 2.83
339 340 9.634021 ATCCTCTAAAATTATTCCCTCTGTTTC 57.366 33.333 0.00 0.00 0.00 2.78
340 341 7.769044 TCCTCTAAAATTATTCCCTCTGTTTCG 59.231 37.037 0.00 0.00 0.00 3.46
341 342 7.769044 CCTCTAAAATTATTCCCTCTGTTTCGA 59.231 37.037 0.00 0.00 0.00 3.71
342 343 9.162764 CTCTAAAATTATTCCCTCTGTTTCGAA 57.837 33.333 0.00 0.00 0.00 3.71
343 344 9.681062 TCTAAAATTATTCCCTCTGTTTCGAAT 57.319 29.630 0.00 0.00 0.00 3.34
352 353 8.662781 TTCCCTCTGTTTCGAATTATAAGATG 57.337 34.615 0.00 0.00 0.00 2.90
353 354 7.792032 TCCCTCTGTTTCGAATTATAAGATGT 58.208 34.615 0.00 0.00 0.00 3.06
354 355 8.265055 TCCCTCTGTTTCGAATTATAAGATGTT 58.735 33.333 0.00 0.00 0.00 2.71
355 356 8.552034 CCCTCTGTTTCGAATTATAAGATGTTC 58.448 37.037 0.00 0.00 0.00 3.18
356 357 9.319143 CCTCTGTTTCGAATTATAAGATGTTCT 57.681 33.333 0.00 0.00 0.00 3.01
388 389 9.961265 TTTTTCGAATCAGATGTATATAGACGT 57.039 29.630 0.00 0.00 0.00 4.34
389 390 8.950403 TTTCGAATCAGATGTATATAGACGTG 57.050 34.615 0.00 0.00 0.00 4.49
390 391 7.668525 TCGAATCAGATGTATATAGACGTGT 57.331 36.000 0.00 0.00 0.00 4.49
391 392 8.095937 TCGAATCAGATGTATATAGACGTGTT 57.904 34.615 0.00 0.00 0.00 3.32
392 393 8.565416 TCGAATCAGATGTATATAGACGTGTTT 58.435 33.333 0.00 0.00 0.00 2.83
393 394 9.181805 CGAATCAGATGTATATAGACGTGTTTT 57.818 33.333 0.00 0.00 0.00 2.43
396 397 9.900710 ATCAGATGTATATAGACGTGTTTTCTC 57.099 33.333 0.00 0.00 0.00 2.87
397 398 8.899771 TCAGATGTATATAGACGTGTTTTCTCA 58.100 33.333 0.00 0.00 0.00 3.27
398 399 9.175060 CAGATGTATATAGACGTGTTTTCTCAG 57.825 37.037 0.00 0.00 0.00 3.35
399 400 8.904834 AGATGTATATAGACGTGTTTTCTCAGT 58.095 33.333 0.00 0.00 0.00 3.41
400 401 9.171701 GATGTATATAGACGTGTTTTCTCAGTC 57.828 37.037 0.00 0.00 0.00 3.51
401 402 7.478322 TGTATATAGACGTGTTTTCTCAGTCC 58.522 38.462 0.00 0.00 32.70 3.85
402 403 2.135664 AGACGTGTTTTCTCAGTCCG 57.864 50.000 0.00 0.00 32.70 4.79
403 404 1.407979 AGACGTGTTTTCTCAGTCCGT 59.592 47.619 0.00 0.00 32.70 4.69
404 405 2.620115 AGACGTGTTTTCTCAGTCCGTA 59.380 45.455 0.00 0.00 32.70 4.02
405 406 3.255149 AGACGTGTTTTCTCAGTCCGTAT 59.745 43.478 0.00 0.00 32.70 3.06
406 407 3.314553 ACGTGTTTTCTCAGTCCGTATG 58.685 45.455 0.00 0.00 0.00 2.39
407 408 3.243636 ACGTGTTTTCTCAGTCCGTATGT 60.244 43.478 0.00 0.00 0.00 2.29
408 409 4.022935 ACGTGTTTTCTCAGTCCGTATGTA 60.023 41.667 0.00 0.00 0.00 2.29
409 410 4.557690 CGTGTTTTCTCAGTCCGTATGTAG 59.442 45.833 0.00 0.00 0.00 2.74
410 411 5.467705 GTGTTTTCTCAGTCCGTATGTAGT 58.532 41.667 0.00 0.00 0.00 2.73
411 412 5.924825 GTGTTTTCTCAGTCCGTATGTAGTT 59.075 40.000 0.00 0.00 0.00 2.24
412 413 6.089150 GTGTTTTCTCAGTCCGTATGTAGTTC 59.911 42.308 0.00 0.00 0.00 3.01
413 414 5.970317 TTTCTCAGTCCGTATGTAGTTCA 57.030 39.130 0.00 0.00 0.00 3.18
414 415 6.525578 TTTCTCAGTCCGTATGTAGTTCAT 57.474 37.500 0.00 0.00 40.25 2.57
415 416 5.500645 TCTCAGTCCGTATGTAGTTCATG 57.499 43.478 0.00 0.00 37.91 3.07
416 417 4.948004 TCTCAGTCCGTATGTAGTTCATGT 59.052 41.667 0.00 0.00 37.91 3.21
417 418 5.417894 TCTCAGTCCGTATGTAGTTCATGTT 59.582 40.000 0.00 0.00 37.91 2.71
418 419 5.407502 TCAGTCCGTATGTAGTTCATGTTG 58.592 41.667 0.00 0.00 37.91 3.33
419 420 5.184287 TCAGTCCGTATGTAGTTCATGTTGA 59.816 40.000 0.00 0.00 37.91 3.18
420 421 5.867174 CAGTCCGTATGTAGTTCATGTTGAA 59.133 40.000 0.00 0.00 37.91 2.69
421 422 6.367695 CAGTCCGTATGTAGTTCATGTTGAAA 59.632 38.462 0.00 0.00 38.22 2.69
422 423 7.064609 CAGTCCGTATGTAGTTCATGTTGAAAT 59.935 37.037 0.00 0.00 38.22 2.17
423 424 8.255206 AGTCCGTATGTAGTTCATGTTGAAATA 58.745 33.333 0.00 0.00 38.22 1.40
431 432 8.728088 GTAGTTCATGTTGAAATACCACAAAG 57.272 34.615 13.89 0.00 46.27 2.77
432 433 7.581213 AGTTCATGTTGAAATACCACAAAGA 57.419 32.000 0.00 0.00 38.22 2.52
433 434 8.181904 AGTTCATGTTGAAATACCACAAAGAT 57.818 30.769 0.00 0.00 38.22 2.40
434 435 8.641541 AGTTCATGTTGAAATACCACAAAGATT 58.358 29.630 0.00 0.00 38.22 2.40
435 436 9.260002 GTTCATGTTGAAATACCACAAAGATTT 57.740 29.630 0.00 0.00 38.22 2.17
436 437 9.829507 TTCATGTTGAAATACCACAAAGATTTT 57.170 25.926 0.00 0.00 32.71 1.82
465 466 4.298103 TCAGAACGGAGGAAGTAGTACT 57.702 45.455 0.00 0.00 0.00 2.73
478 479 8.009622 AGGAAGTAGTACTCTAGTATTTTGCC 57.990 38.462 2.58 0.00 32.54 4.52
481 482 7.916077 AGTAGTACTCTAGTATTTTGCCCAT 57.084 36.000 0.00 0.00 32.54 4.00
482 483 8.320338 AGTAGTACTCTAGTATTTTGCCCATT 57.680 34.615 0.00 0.00 32.54 3.16
483 484 8.769359 AGTAGTACTCTAGTATTTTGCCCATTT 58.231 33.333 0.00 0.00 32.54 2.32
511 512 6.926630 AAACCTAAACTTAATCATGCCCAA 57.073 33.333 0.00 0.00 0.00 4.12
512 513 5.914898 ACCTAAACTTAATCATGCCCAAC 57.085 39.130 0.00 0.00 0.00 3.77
515 516 6.602009 ACCTAAACTTAATCATGCCCAACTAC 59.398 38.462 0.00 0.00 0.00 2.73
582 583 4.873768 ACCATTTCCTTTTTGTTTTGCG 57.126 36.364 0.00 0.00 0.00 4.85
689 690 2.491152 CCGTGCCAACATGCATCC 59.509 61.111 0.00 0.00 44.30 3.51
690 691 2.341875 CCGTGCCAACATGCATCCA 61.342 57.895 0.00 0.00 44.30 3.41
691 692 1.669049 CCGTGCCAACATGCATCCAT 61.669 55.000 0.00 0.00 44.30 3.41
692 693 0.173935 CGTGCCAACATGCATCCATT 59.826 50.000 0.00 0.00 44.30 3.16
693 694 1.799917 CGTGCCAACATGCATCCATTC 60.800 52.381 0.00 0.00 44.30 2.67
694 695 1.205179 GTGCCAACATGCATCCATTCA 59.795 47.619 0.00 0.00 44.30 2.57
695 696 2.112190 TGCCAACATGCATCCATTCAT 58.888 42.857 0.00 0.00 36.04 2.57
696 697 2.101750 TGCCAACATGCATCCATTCATC 59.898 45.455 0.00 0.00 36.04 2.92
775 790 4.959596 GCGCCCTCGATCAGCTCC 62.960 72.222 0.00 0.00 38.10 4.70
836 858 2.425668 ACACTCCAAAACCAAAACCTCG 59.574 45.455 0.00 0.00 0.00 4.63
937 960 3.735208 CGCGAGCTACCTGGATATATTGG 60.735 52.174 0.00 0.00 0.00 3.16
938 961 3.430929 GCGAGCTACCTGGATATATTGGG 60.431 52.174 0.00 0.00 0.00 4.12
942 965 3.430929 GCTACCTGGATATATTGGGCTCG 60.431 52.174 0.00 0.00 0.00 5.03
957 980 0.528466 GCTCGTTCTGATCCATCGCA 60.528 55.000 0.00 0.00 0.00 5.10
990 1013 4.478371 TGCATGCAGGAGCCGAGG 62.478 66.667 18.46 0.00 41.13 4.63
2044 2081 6.307776 ACTACCTTCGATCTCTGATGGATTA 58.692 40.000 7.67 0.00 35.31 1.75
2061 2098 6.328641 TGGATTATCTACGAGGTTTAGCTC 57.671 41.667 0.00 0.00 0.00 4.09
2079 2116 2.911484 CTCCCAGGTTCTTCATGTAGC 58.089 52.381 0.00 0.00 0.00 3.58
2081 2118 2.501723 TCCCAGGTTCTTCATGTAGCTC 59.498 50.000 0.00 0.00 0.00 4.09
2091 2128 1.202568 TCATGTAGCTCGGCATGAAGG 60.203 52.381 19.61 2.08 45.60 3.46
2166 2203 1.848932 CGCGCATGAGCTATTGCCAT 61.849 55.000 19.47 0.00 40.80 4.40
2187 2224 5.105756 CCATAACCAGGAAAATGAGACCAAC 60.106 44.000 0.00 0.00 0.00 3.77
2362 2423 6.422701 CGTGGTGAAAACTTACATCAGACTTA 59.577 38.462 0.00 0.00 0.00 2.24
2420 2481 6.035843 GCAAAATATGACGGTGAATTGTGAT 58.964 36.000 0.00 0.00 0.00 3.06
2564 2626 2.509336 CCCGCCAGTAGCTTGTCG 60.509 66.667 0.00 0.00 40.39 4.35
2567 2629 0.872021 CCGCCAGTAGCTTGTCGATC 60.872 60.000 0.00 0.00 40.39 3.69
2622 2684 1.605232 CTGACACAGCAATGCTCACAA 59.395 47.619 4.03 0.00 36.40 3.33
2744 2806 0.037605 GTAGTGGACTGGAACACCGG 60.038 60.000 0.00 0.00 38.34 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.287312 CGTGAGTTCATGCCAAAACAT 57.713 42.857 0.00 0.00 0.00 2.71
7 8 2.772568 CGTGAGTTCATGCCAAAACA 57.227 45.000 0.00 0.00 0.00 2.83
15 16 1.135603 CAACATGGGCGTGAGTTCATG 60.136 52.381 0.00 0.00 43.70 3.07
16 17 1.167851 CAACATGGGCGTGAGTTCAT 58.832 50.000 0.00 0.00 0.00 2.57
17 18 0.888736 CCAACATGGGCGTGAGTTCA 60.889 55.000 0.00 0.00 32.67 3.18
18 19 1.875963 CCAACATGGGCGTGAGTTC 59.124 57.895 0.00 0.00 32.67 3.01
19 20 4.079446 CCAACATGGGCGTGAGTT 57.921 55.556 0.00 0.00 32.67 3.01
28 29 3.119029 CCTTTTGCAGATACCCAACATGG 60.119 47.826 0.00 0.00 37.25 3.66
29 30 3.511146 ACCTTTTGCAGATACCCAACATG 59.489 43.478 0.00 0.00 0.00 3.21
30 31 3.511146 CACCTTTTGCAGATACCCAACAT 59.489 43.478 0.00 0.00 0.00 2.71
31 32 2.890311 CACCTTTTGCAGATACCCAACA 59.110 45.455 0.00 0.00 0.00 3.33
32 33 2.890945 ACACCTTTTGCAGATACCCAAC 59.109 45.455 0.00 0.00 0.00 3.77
33 34 2.890311 CACACCTTTTGCAGATACCCAA 59.110 45.455 0.00 0.00 0.00 4.12
34 35 2.513753 CACACCTTTTGCAGATACCCA 58.486 47.619 0.00 0.00 0.00 4.51
35 36 1.202348 GCACACCTTTTGCAGATACCC 59.798 52.381 0.00 0.00 39.93 3.69
36 37 1.202348 GGCACACCTTTTGCAGATACC 59.798 52.381 0.00 0.00 42.12 2.73
37 38 2.636768 GGCACACCTTTTGCAGATAC 57.363 50.000 0.00 0.00 42.12 2.24
49 50 3.279434 CCCTCAATAGTAAAGGCACACC 58.721 50.000 0.00 0.00 0.00 4.16
50 51 3.054655 TCCCCTCAATAGTAAAGGCACAC 60.055 47.826 0.00 0.00 0.00 3.82
51 52 3.186283 TCCCCTCAATAGTAAAGGCACA 58.814 45.455 0.00 0.00 0.00 4.57
52 53 3.926058 TCCCCTCAATAGTAAAGGCAC 57.074 47.619 0.00 0.00 0.00 5.01
53 54 5.044476 TGAAATCCCCTCAATAGTAAAGGCA 60.044 40.000 0.00 0.00 0.00 4.75
54 55 5.445964 TGAAATCCCCTCAATAGTAAAGGC 58.554 41.667 0.00 0.00 0.00 4.35
55 56 7.779798 TGATTGAAATCCCCTCAATAGTAAAGG 59.220 37.037 0.72 0.00 42.27 3.11
56 57 8.752005 TGATTGAAATCCCCTCAATAGTAAAG 57.248 34.615 0.72 0.00 42.27 1.85
57 58 9.540538 TTTGATTGAAATCCCCTCAATAGTAAA 57.459 29.630 0.72 0.16 42.27 2.01
58 59 8.966868 GTTTGATTGAAATCCCCTCAATAGTAA 58.033 33.333 0.72 0.00 42.27 2.24
59 60 7.282224 CGTTTGATTGAAATCCCCTCAATAGTA 59.718 37.037 0.72 0.00 42.27 1.82
60 61 6.095440 CGTTTGATTGAAATCCCCTCAATAGT 59.905 38.462 0.72 0.00 42.27 2.12
61 62 6.318648 TCGTTTGATTGAAATCCCCTCAATAG 59.681 38.462 0.72 0.00 42.27 1.73
62 63 6.184068 TCGTTTGATTGAAATCCCCTCAATA 58.816 36.000 0.72 0.00 42.27 1.90
63 64 5.016173 TCGTTTGATTGAAATCCCCTCAAT 58.984 37.500 0.72 0.00 44.34 2.57
64 65 4.402829 TCGTTTGATTGAAATCCCCTCAA 58.597 39.130 0.72 0.00 37.22 3.02
65 66 4.027674 TCGTTTGATTGAAATCCCCTCA 57.972 40.909 0.72 0.00 34.50 3.86
66 67 4.202050 CCATCGTTTGATTGAAATCCCCTC 60.202 45.833 0.72 0.00 34.50 4.30
67 68 3.701040 CCATCGTTTGATTGAAATCCCCT 59.299 43.478 0.72 0.00 34.50 4.79
68 69 3.181476 CCCATCGTTTGATTGAAATCCCC 60.181 47.826 0.72 0.00 34.50 4.81
69 70 3.447229 ACCCATCGTTTGATTGAAATCCC 59.553 43.478 0.72 0.00 34.50 3.85
70 71 4.718940 ACCCATCGTTTGATTGAAATCC 57.281 40.909 0.72 0.00 34.50 3.01
71 72 5.102313 GGAACCCATCGTTTGATTGAAATC 58.898 41.667 0.00 0.00 33.74 2.17
72 73 4.526262 TGGAACCCATCGTTTGATTGAAAT 59.474 37.500 0.00 0.00 33.74 2.17
73 74 3.891977 TGGAACCCATCGTTTGATTGAAA 59.108 39.130 0.00 0.00 33.74 2.69
74 75 3.491342 TGGAACCCATCGTTTGATTGAA 58.509 40.909 0.00 0.00 33.74 2.69
75 76 3.081061 CTGGAACCCATCGTTTGATTGA 58.919 45.455 0.00 0.00 33.74 2.57
76 77 2.164219 CCTGGAACCCATCGTTTGATTG 59.836 50.000 0.00 0.00 33.74 2.67
77 78 2.225017 ACCTGGAACCCATCGTTTGATT 60.225 45.455 0.00 0.00 33.74 2.57
78 79 1.354368 ACCTGGAACCCATCGTTTGAT 59.646 47.619 0.00 0.00 33.74 2.57
79 80 0.768622 ACCTGGAACCCATCGTTTGA 59.231 50.000 0.00 0.00 33.74 2.69
80 81 2.483014 TACCTGGAACCCATCGTTTG 57.517 50.000 0.00 0.00 33.74 2.93
81 82 2.092592 GGATACCTGGAACCCATCGTTT 60.093 50.000 0.00 0.00 33.74 3.60
82 83 1.489230 GGATACCTGGAACCCATCGTT 59.511 52.381 0.00 0.00 37.41 3.85
83 84 1.129058 GGATACCTGGAACCCATCGT 58.871 55.000 0.00 0.00 30.82 3.73
84 85 1.128200 TGGATACCTGGAACCCATCG 58.872 55.000 0.00 0.00 30.82 3.84
85 86 3.662759 TTTGGATACCTGGAACCCATC 57.337 47.619 0.00 0.00 30.82 3.51
86 87 4.202781 ACTTTTTGGATACCTGGAACCCAT 60.203 41.667 0.00 0.00 30.82 4.00
87 88 3.141272 ACTTTTTGGATACCTGGAACCCA 59.859 43.478 0.00 0.87 0.00 4.51
88 89 3.774734 ACTTTTTGGATACCTGGAACCC 58.225 45.455 0.00 0.00 0.00 4.11
89 90 5.296035 CGATACTTTTTGGATACCTGGAACC 59.704 44.000 0.00 1.02 0.00 3.62
90 91 5.878669 ACGATACTTTTTGGATACCTGGAAC 59.121 40.000 0.00 0.00 0.00 3.62
91 92 6.057321 ACGATACTTTTTGGATACCTGGAA 57.943 37.500 0.00 0.00 0.00 3.53
92 93 5.687166 ACGATACTTTTTGGATACCTGGA 57.313 39.130 0.00 0.00 0.00 3.86
93 94 6.812998 TCTACGATACTTTTTGGATACCTGG 58.187 40.000 0.00 0.00 0.00 4.45
94 95 7.980099 ACTTCTACGATACTTTTTGGATACCTG 59.020 37.037 0.00 0.00 0.00 4.00
95 96 8.075761 ACTTCTACGATACTTTTTGGATACCT 57.924 34.615 0.00 0.00 0.00 3.08
96 97 9.978044 ATACTTCTACGATACTTTTTGGATACC 57.022 33.333 0.00 0.00 0.00 2.73
161 162 6.069705 TCCCGTAAGTATCCCTTGATTTTT 57.930 37.500 0.00 0.00 34.46 1.94
162 163 5.703730 TCCCGTAAGTATCCCTTGATTTT 57.296 39.130 0.00 0.00 34.46 1.82
163 164 5.906772 ATCCCGTAAGTATCCCTTGATTT 57.093 39.130 0.00 0.00 34.46 2.17
164 165 5.047519 CGTATCCCGTAAGTATCCCTTGATT 60.048 44.000 0.00 0.00 34.46 2.57
165 166 4.461781 CGTATCCCGTAAGTATCCCTTGAT 59.538 45.833 0.00 0.00 34.46 2.57
166 167 3.822735 CGTATCCCGTAAGTATCCCTTGA 59.177 47.826 0.00 0.00 34.46 3.02
167 168 4.170292 CGTATCCCGTAAGTATCCCTTG 57.830 50.000 0.00 0.00 34.46 3.61
180 181 1.211969 CGGCCTGATACGTATCCCG 59.788 63.158 28.17 27.21 44.03 5.14
181 182 1.538047 TACGGCCTGATACGTATCCC 58.462 55.000 28.17 21.43 43.79 3.85
185 186 2.215077 CCCGATACGGCCTGATACGTA 61.215 57.143 0.00 0.00 46.86 3.57
186 187 1.521450 CCCGATACGGCCTGATACGT 61.521 60.000 0.00 0.00 46.86 3.57
187 188 1.211969 CCCGATACGGCCTGATACG 59.788 63.158 0.00 0.00 46.86 3.06
188 189 1.590147 CCCCGATACGGCCTGATAC 59.410 63.158 0.00 0.00 46.86 2.24
189 190 2.280552 GCCCCGATACGGCCTGATA 61.281 63.158 0.00 0.00 46.86 2.15
190 191 3.626924 GCCCCGATACGGCCTGAT 61.627 66.667 0.00 0.00 46.86 2.90
192 193 4.609018 CTGCCCCGATACGGCCTG 62.609 72.222 0.00 0.00 46.86 4.85
193 194 3.744003 TACTGCCCCGATACGGCCT 62.744 63.158 0.00 0.00 46.86 5.19
194 195 2.502692 GATACTGCCCCGATACGGCC 62.503 65.000 4.57 0.00 46.86 6.13
195 196 1.080025 GATACTGCCCCGATACGGC 60.080 63.158 4.57 0.00 46.86 5.68
216 217 3.492980 GAAAGCGCGCGTATCCAGC 62.493 63.158 32.35 12.72 0.00 4.85
217 218 2.621000 GAAAGCGCGCGTATCCAG 59.379 61.111 32.35 0.92 0.00 3.86
218 219 2.888534 GGAAAGCGCGCGTATCCA 60.889 61.111 33.12 0.00 0.00 3.41
219 220 3.984765 CGGAAAGCGCGCGTATCC 61.985 66.667 32.35 30.39 0.00 2.59
220 221 2.398800 CTTCGGAAAGCGCGCGTATC 62.399 60.000 32.35 24.44 0.00 2.24
221 222 2.507547 TTCGGAAAGCGCGCGTAT 60.508 55.556 32.35 18.06 0.00 3.06
222 223 2.526091 TACTTCGGAAAGCGCGCGTA 62.526 55.000 32.35 15.94 35.81 4.42
223 224 3.902162 TACTTCGGAAAGCGCGCGT 62.902 57.895 32.35 21.73 35.81 6.01
224 225 2.398800 GATACTTCGGAAAGCGCGCG 62.399 60.000 28.44 28.44 35.81 6.86
225 226 1.273007 GATACTTCGGAAAGCGCGC 59.727 57.895 26.66 26.66 35.81 6.86
226 227 1.808234 CGGATACTTCGGAAAGCGCG 61.808 60.000 0.00 0.00 35.81 6.86
227 228 1.925052 CGGATACTTCGGAAAGCGC 59.075 57.895 0.00 0.00 35.81 5.92
228 229 1.808234 CGCGGATACTTCGGAAAGCG 61.808 60.000 0.00 0.00 40.37 4.68
229 230 1.925052 CGCGGATACTTCGGAAAGC 59.075 57.895 0.00 0.00 35.81 3.51
230 231 0.804544 TGCGCGGATACTTCGGAAAG 60.805 55.000 8.83 0.00 38.54 2.62
231 232 0.390078 TTGCGCGGATACTTCGGAAA 60.390 50.000 8.83 0.00 37.53 3.13
232 233 1.079875 GTTGCGCGGATACTTCGGAA 61.080 55.000 8.83 0.00 37.95 4.30
233 234 1.517694 GTTGCGCGGATACTTCGGA 60.518 57.895 8.83 0.00 0.00 4.55
234 235 2.856346 CGTTGCGCGGATACTTCGG 61.856 63.158 8.83 0.00 36.85 4.30
235 236 0.862701 TACGTTGCGCGGATACTTCG 60.863 55.000 8.83 8.08 46.52 3.79
236 237 0.844503 CTACGTTGCGCGGATACTTC 59.155 55.000 8.83 0.00 46.52 3.01
237 238 0.452987 TCTACGTTGCGCGGATACTT 59.547 50.000 8.83 2.76 46.52 2.24
238 239 0.248377 GTCTACGTTGCGCGGATACT 60.248 55.000 8.83 0.00 46.52 2.12
239 240 1.526617 CGTCTACGTTGCGCGGATAC 61.527 60.000 8.83 5.53 46.52 2.24
240 241 1.297819 CGTCTACGTTGCGCGGATA 60.298 57.895 8.83 0.00 46.52 2.59
241 242 2.578713 CGTCTACGTTGCGCGGAT 60.579 61.111 8.83 0.00 46.52 4.18
242 243 3.725459 TCGTCTACGTTGCGCGGA 61.725 61.111 8.83 0.00 46.52 5.54
243 244 3.530104 GTCGTCTACGTTGCGCGG 61.530 66.667 8.83 0.00 46.52 6.46
244 245 3.871737 CGTCGTCTACGTTGCGCG 61.872 66.667 0.00 0.00 46.72 6.86
252 253 0.660595 CCGCCATCATCGTCGTCTAC 60.661 60.000 0.00 0.00 0.00 2.59
253 254 1.652563 CCGCCATCATCGTCGTCTA 59.347 57.895 0.00 0.00 0.00 2.59
254 255 2.413351 CCGCCATCATCGTCGTCT 59.587 61.111 0.00 0.00 0.00 4.18
255 256 3.330853 GCCGCCATCATCGTCGTC 61.331 66.667 0.00 0.00 0.00 4.20
257 258 4.923710 TCGCCGCCATCATCGTCG 62.924 66.667 0.00 0.00 0.00 5.12
258 259 3.330853 GTCGCCGCCATCATCGTC 61.331 66.667 0.00 0.00 0.00 4.20
259 260 3.657448 TTGTCGCCGCCATCATCGT 62.657 57.895 0.00 0.00 0.00 3.73
260 261 2.889988 TTGTCGCCGCCATCATCG 60.890 61.111 0.00 0.00 0.00 3.84
261 262 2.709475 GTTGTCGCCGCCATCATC 59.291 61.111 0.00 0.00 0.00 2.92
262 263 3.195002 CGTTGTCGCCGCCATCAT 61.195 61.111 0.00 0.00 0.00 2.45
263 264 4.365505 TCGTTGTCGCCGCCATCA 62.366 61.111 0.00 0.00 36.96 3.07
264 265 3.849953 GTCGTTGTCGCCGCCATC 61.850 66.667 0.00 0.00 36.96 3.51
265 266 2.566057 TATGTCGTTGTCGCCGCCAT 62.566 55.000 0.00 0.00 36.96 4.40
266 267 2.566057 ATATGTCGTTGTCGCCGCCA 62.566 55.000 0.00 0.00 36.96 5.69
267 268 1.426041 AATATGTCGTTGTCGCCGCC 61.426 55.000 0.00 0.00 36.96 6.13
268 269 0.372334 AAATATGTCGTTGTCGCCGC 59.628 50.000 0.00 0.00 36.96 6.53
269 270 2.092995 TCAAAATATGTCGTTGTCGCCG 59.907 45.455 0.00 0.00 36.96 6.46
270 271 3.733024 TCAAAATATGTCGTTGTCGCC 57.267 42.857 0.00 0.00 36.96 5.54
271 272 5.792962 TGAATTCAAAATATGTCGTTGTCGC 59.207 36.000 5.45 0.00 36.96 5.19
272 273 7.481483 ACATGAATTCAAAATATGTCGTTGTCG 59.519 33.333 13.09 0.00 38.55 4.35
273 274 8.673626 ACATGAATTCAAAATATGTCGTTGTC 57.326 30.769 13.09 0.00 0.00 3.18
274 275 9.128107 GAACATGAATTCAAAATATGTCGTTGT 57.872 29.630 13.09 4.72 31.30 3.32
275 276 9.345517 AGAACATGAATTCAAAATATGTCGTTG 57.654 29.630 13.09 4.07 31.30 4.10
286 287 9.311916 CCACAAAAGTTAGAACATGAATTCAAA 57.688 29.630 13.09 0.00 0.00 2.69
287 288 8.690884 TCCACAAAAGTTAGAACATGAATTCAA 58.309 29.630 13.09 0.00 0.00 2.69
288 289 8.231692 TCCACAAAAGTTAGAACATGAATTCA 57.768 30.769 11.26 11.26 0.00 2.57
289 290 9.346725 GATCCACAAAAGTTAGAACATGAATTC 57.653 33.333 0.00 0.00 0.00 2.17
290 291 8.306761 GGATCCACAAAAGTTAGAACATGAATT 58.693 33.333 6.95 0.00 0.00 2.17
291 292 7.671398 AGGATCCACAAAAGTTAGAACATGAAT 59.329 33.333 15.82 0.00 0.00 2.57
292 293 7.004086 AGGATCCACAAAAGTTAGAACATGAA 58.996 34.615 15.82 0.00 0.00 2.57
293 294 6.542821 AGGATCCACAAAAGTTAGAACATGA 58.457 36.000 15.82 0.00 0.00 3.07
294 295 6.656693 AGAGGATCCACAAAAGTTAGAACATG 59.343 38.462 15.82 0.00 33.66 3.21
295 296 6.784031 AGAGGATCCACAAAAGTTAGAACAT 58.216 36.000 15.82 0.00 33.66 2.71
296 297 6.187727 AGAGGATCCACAAAAGTTAGAACA 57.812 37.500 15.82 0.00 33.66 3.18
297 298 8.617290 TTTAGAGGATCCACAAAAGTTAGAAC 57.383 34.615 15.82 0.00 33.66 3.01
298 299 9.807921 ATTTTAGAGGATCCACAAAAGTTAGAA 57.192 29.630 15.82 0.00 33.66 2.10
299 300 9.807921 AATTTTAGAGGATCCACAAAAGTTAGA 57.192 29.630 15.82 0.00 33.66 2.10
305 306 8.977412 GGGAATAATTTTAGAGGATCCACAAAA 58.023 33.333 15.82 15.96 33.66 2.44
306 307 8.343787 AGGGAATAATTTTAGAGGATCCACAAA 58.656 33.333 15.82 7.87 33.66 2.83
307 308 7.882755 AGGGAATAATTTTAGAGGATCCACAA 58.117 34.615 15.82 1.27 33.66 3.33
308 309 7.350921 AGAGGGAATAATTTTAGAGGATCCACA 59.649 37.037 15.82 0.00 33.66 4.17
309 310 7.663493 CAGAGGGAATAATTTTAGAGGATCCAC 59.337 40.741 15.82 8.01 33.66 4.02
310 311 7.350921 ACAGAGGGAATAATTTTAGAGGATCCA 59.649 37.037 15.82 0.00 33.66 3.41
311 312 7.750655 ACAGAGGGAATAATTTTAGAGGATCC 58.249 38.462 2.48 2.48 33.66 3.36
312 313 9.634021 AAACAGAGGGAATAATTTTAGAGGATC 57.366 33.333 0.00 0.00 0.00 3.36
313 314 9.634021 GAAACAGAGGGAATAATTTTAGAGGAT 57.366 33.333 0.00 0.00 0.00 3.24
314 315 7.769044 CGAAACAGAGGGAATAATTTTAGAGGA 59.231 37.037 0.00 0.00 0.00 3.71
315 316 7.769044 TCGAAACAGAGGGAATAATTTTAGAGG 59.231 37.037 0.00 0.00 0.00 3.69
316 317 8.718102 TCGAAACAGAGGGAATAATTTTAGAG 57.282 34.615 0.00 0.00 0.00 2.43
317 318 9.681062 ATTCGAAACAGAGGGAATAATTTTAGA 57.319 29.630 0.00 0.00 0.00 2.10
326 327 9.277783 CATCTTATAATTCGAAACAGAGGGAAT 57.722 33.333 0.00 0.00 0.00 3.01
327 328 8.265055 ACATCTTATAATTCGAAACAGAGGGAA 58.735 33.333 0.00 0.00 0.00 3.97
328 329 7.792032 ACATCTTATAATTCGAAACAGAGGGA 58.208 34.615 0.00 0.00 0.00 4.20
329 330 8.438676 AACATCTTATAATTCGAAACAGAGGG 57.561 34.615 0.00 0.00 0.00 4.30
330 331 9.319143 AGAACATCTTATAATTCGAAACAGAGG 57.681 33.333 0.00 3.97 0.00 3.69
362 363 9.961265 ACGTCTATATACATCTGATTCGAAAAA 57.039 29.630 0.00 0.00 0.00 1.94
363 364 9.394477 CACGTCTATATACATCTGATTCGAAAA 57.606 33.333 0.00 0.00 0.00 2.29
364 365 8.565416 ACACGTCTATATACATCTGATTCGAAA 58.435 33.333 0.00 0.00 0.00 3.46
365 366 8.095937 ACACGTCTATATACATCTGATTCGAA 57.904 34.615 0.00 0.00 0.00 3.71
366 367 7.668525 ACACGTCTATATACATCTGATTCGA 57.331 36.000 0.00 0.00 0.00 3.71
367 368 8.729529 AAACACGTCTATATACATCTGATTCG 57.270 34.615 0.00 0.00 0.00 3.34
370 371 9.900710 GAGAAAACACGTCTATATACATCTGAT 57.099 33.333 0.00 0.00 0.00 2.90
371 372 8.899771 TGAGAAAACACGTCTATATACATCTGA 58.100 33.333 0.00 0.00 0.00 3.27
372 373 9.175060 CTGAGAAAACACGTCTATATACATCTG 57.825 37.037 0.00 0.00 0.00 2.90
373 374 8.904834 ACTGAGAAAACACGTCTATATACATCT 58.095 33.333 0.00 0.00 0.00 2.90
374 375 9.171701 GACTGAGAAAACACGTCTATATACATC 57.828 37.037 0.00 0.00 0.00 3.06
375 376 8.136165 GGACTGAGAAAACACGTCTATATACAT 58.864 37.037 0.00 0.00 0.00 2.29
376 377 7.478322 GGACTGAGAAAACACGTCTATATACA 58.522 38.462 0.00 0.00 0.00 2.29
377 378 6.632035 CGGACTGAGAAAACACGTCTATATAC 59.368 42.308 0.00 0.00 0.00 1.47
378 379 6.317140 ACGGACTGAGAAAACACGTCTATATA 59.683 38.462 0.00 0.00 0.00 0.86
379 380 5.125097 ACGGACTGAGAAAACACGTCTATAT 59.875 40.000 0.00 0.00 0.00 0.86
380 381 4.456911 ACGGACTGAGAAAACACGTCTATA 59.543 41.667 0.00 0.00 0.00 1.31
381 382 3.255149 ACGGACTGAGAAAACACGTCTAT 59.745 43.478 0.00 0.00 0.00 1.98
382 383 2.620115 ACGGACTGAGAAAACACGTCTA 59.380 45.455 0.00 0.00 0.00 2.59
383 384 1.407979 ACGGACTGAGAAAACACGTCT 59.592 47.619 0.00 0.00 0.00 4.18
384 385 1.849097 ACGGACTGAGAAAACACGTC 58.151 50.000 0.00 0.00 0.00 4.34
385 386 3.243636 ACATACGGACTGAGAAAACACGT 60.244 43.478 0.00 0.00 36.93 4.49
386 387 3.314553 ACATACGGACTGAGAAAACACG 58.685 45.455 0.00 0.00 0.00 4.49
387 388 5.467705 ACTACATACGGACTGAGAAAACAC 58.532 41.667 0.00 0.00 0.00 3.32
388 389 5.717078 ACTACATACGGACTGAGAAAACA 57.283 39.130 0.00 0.00 0.00 2.83
389 390 6.154445 TGAACTACATACGGACTGAGAAAAC 58.846 40.000 0.00 0.00 0.00 2.43
390 391 6.335471 TGAACTACATACGGACTGAGAAAA 57.665 37.500 0.00 0.00 0.00 2.29
391 392 5.970317 TGAACTACATACGGACTGAGAAA 57.030 39.130 0.00 0.00 0.00 2.52
392 393 5.417894 ACATGAACTACATACGGACTGAGAA 59.582 40.000 0.00 0.00 37.46 2.87
393 394 4.948004 ACATGAACTACATACGGACTGAGA 59.052 41.667 0.00 0.00 37.46 3.27
394 395 5.250235 ACATGAACTACATACGGACTGAG 57.750 43.478 0.00 0.00 37.46 3.35
395 396 5.184287 TCAACATGAACTACATACGGACTGA 59.816 40.000 0.00 0.00 37.46 3.41
396 397 5.407502 TCAACATGAACTACATACGGACTG 58.592 41.667 0.00 0.00 37.46 3.51
397 398 5.654603 TCAACATGAACTACATACGGACT 57.345 39.130 0.00 0.00 37.46 3.85
398 399 6.715344 TTTCAACATGAACTACATACGGAC 57.285 37.500 0.00 0.00 35.89 4.79
399 400 7.493320 GGTATTTCAACATGAACTACATACGGA 59.507 37.037 17.06 0.00 41.45 4.69
400 401 7.279090 TGGTATTTCAACATGAACTACATACGG 59.721 37.037 17.06 0.00 41.45 4.02
401 402 8.114290 GTGGTATTTCAACATGAACTACATACG 58.886 37.037 17.06 0.00 41.45 3.06
402 403 8.941977 TGTGGTATTTCAACATGAACTACATAC 58.058 33.333 17.06 15.24 41.45 2.39
403 404 9.508642 TTGTGGTATTTCAACATGAACTACATA 57.491 29.630 17.06 7.39 41.45 2.29
404 405 7.994425 TGTGGTATTTCAACATGAACTACAT 57.006 32.000 17.06 2.91 41.45 2.29
405 406 7.809546 TTGTGGTATTTCAACATGAACTACA 57.190 32.000 17.06 8.53 41.45 2.74
406 407 8.564574 TCTTTGTGGTATTTCAACATGAACTAC 58.435 33.333 0.00 10.44 39.98 2.73
407 408 8.684386 TCTTTGTGGTATTTCAACATGAACTA 57.316 30.769 0.00 0.00 35.89 2.24
408 409 7.581213 TCTTTGTGGTATTTCAACATGAACT 57.419 32.000 0.00 0.00 35.89 3.01
409 410 8.816640 AATCTTTGTGGTATTTCAACATGAAC 57.183 30.769 0.00 0.00 35.89 3.18
410 411 9.829507 AAAATCTTTGTGGTATTTCAACATGAA 57.170 25.926 0.00 0.00 34.03 2.57
436 437 9.584008 ACTACTTCCTCCGTTCTGAATTATATA 57.416 33.333 0.00 0.00 0.00 0.86
437 438 8.480133 ACTACTTCCTCCGTTCTGAATTATAT 57.520 34.615 0.00 0.00 0.00 0.86
438 439 7.893124 ACTACTTCCTCCGTTCTGAATTATA 57.107 36.000 0.00 0.00 0.00 0.98
439 440 6.793505 ACTACTTCCTCCGTTCTGAATTAT 57.206 37.500 0.00 0.00 0.00 1.28
483 484 9.713713 GGGCATGATTAAGTTTAGGTTTTAAAA 57.286 29.630 0.00 0.00 0.00 1.52
512 513 9.337091 CTTCTTCTTCTTCTTCTTCTTACGTAG 57.663 37.037 0.00 0.00 0.00 3.51
515 516 8.804688 TTCTTCTTCTTCTTCTTCTTCTTACG 57.195 34.615 0.00 0.00 0.00 3.18
582 583 2.159099 TCTTGGATGCACGATGTAGGAC 60.159 50.000 0.00 0.00 0.00 3.85
689 690 0.671781 GGCCGGGAGATCGATGAATG 60.672 60.000 0.54 0.00 0.00 2.67
690 691 1.674057 GGCCGGGAGATCGATGAAT 59.326 57.895 0.54 0.00 0.00 2.57
691 692 2.856628 CGGCCGGGAGATCGATGAA 61.857 63.158 20.10 0.00 0.00 2.57
692 693 3.295273 CGGCCGGGAGATCGATGA 61.295 66.667 20.10 0.00 0.00 2.92
693 694 3.606662 ACGGCCGGGAGATCGATG 61.607 66.667 31.76 0.00 0.00 3.84
694 695 3.606662 CACGGCCGGGAGATCGAT 61.607 66.667 31.76 0.00 0.00 3.59
695 696 4.807631 TCACGGCCGGGAGATCGA 62.808 66.667 30.05 1.88 0.00 3.59
696 697 4.570663 GTCACGGCCGGGAGATCG 62.571 72.222 34.69 8.61 0.00 3.69
766 781 0.798771 GTGTGACGACGGAGCTGATC 60.799 60.000 0.00 0.00 0.00 2.92
775 790 0.110147 GTGAGGAGAGTGTGACGACG 60.110 60.000 0.00 0.00 0.00 5.12
836 858 3.963383 TTCGAAGTTTGAAGTTGGAGC 57.037 42.857 1.08 0.00 29.70 4.70
883 906 1.356624 GGATGGAAGAAATGCGCGG 59.643 57.895 8.83 0.00 0.00 6.46
918 941 3.777522 AGCCCAATATATCCAGGTAGCTC 59.222 47.826 0.00 0.00 0.00 4.09
919 942 3.777522 GAGCCCAATATATCCAGGTAGCT 59.222 47.826 0.00 0.00 0.00 3.32
920 943 3.430929 CGAGCCCAATATATCCAGGTAGC 60.431 52.174 0.00 0.00 0.00 3.58
921 944 3.769844 ACGAGCCCAATATATCCAGGTAG 59.230 47.826 0.00 0.00 0.00 3.18
938 961 0.528466 TGCGATGGATCAGAACGAGC 60.528 55.000 0.00 0.00 0.00 5.03
942 965 0.924090 GACGTGCGATGGATCAGAAC 59.076 55.000 0.00 0.00 0.00 3.01
972 995 2.895865 CTCGGCTCCTGCATGCAG 60.896 66.667 35.88 35.88 43.26 4.41
990 1013 2.167861 GCTCTCCATGAACGACGGC 61.168 63.158 0.00 0.00 0.00 5.68
991 1014 0.738975 TAGCTCTCCATGAACGACGG 59.261 55.000 0.00 0.00 0.00 4.79
992 1015 1.828832 GTAGCTCTCCATGAACGACG 58.171 55.000 0.00 0.00 0.00 5.12
1023 1046 2.269241 GGCCCCTTCTTCCACGAG 59.731 66.667 0.00 0.00 0.00 4.18
1227 1250 2.106683 GTTGAGGAATGCGTCGGGG 61.107 63.158 0.00 0.00 0.00 5.73
1367 1396 3.254024 TTGAGGTTGAGGAGGCCGC 62.254 63.158 0.00 0.00 0.00 6.53
1463 1492 4.383861 TCCTGGACTGCTGCTGCG 62.384 66.667 11.21 8.29 43.34 5.18
2004 2041 7.705325 TCGAAGGTAGTAAATCATCTAAGCAAC 59.295 37.037 0.00 0.00 0.00 4.17
2013 2050 7.825331 TCAGAGATCGAAGGTAGTAAATCAT 57.175 36.000 0.00 0.00 0.00 2.45
2044 2081 2.959707 CTGGGAGCTAAACCTCGTAGAT 59.040 50.000 0.00 0.00 33.89 1.98
2061 2098 2.739932 CGAGCTACATGAAGAACCTGGG 60.740 54.545 0.00 0.00 0.00 4.45
2079 2116 3.806521 CAGATCTAAACCTTCATGCCGAG 59.193 47.826 0.00 0.00 0.00 4.63
2081 2118 3.535561 ACAGATCTAAACCTTCATGCCG 58.464 45.455 0.00 0.00 0.00 5.69
2166 2203 5.055265 TGTTGGTCTCATTTTCCTGGTTA 57.945 39.130 0.00 0.00 0.00 2.85
2208 2245 7.220030 ACGTTGATGCTATCTGGATAAGATTT 58.780 34.615 0.00 0.00 43.52 2.17
2211 2248 5.301805 TGACGTTGATGCTATCTGGATAAGA 59.698 40.000 0.00 0.00 39.94 2.10
2212 2249 5.532557 TGACGTTGATGCTATCTGGATAAG 58.467 41.667 0.00 0.00 0.00 1.73
2213 2250 5.529581 TGACGTTGATGCTATCTGGATAA 57.470 39.130 0.00 0.00 0.00 1.75
2214 2251 5.728637 ATGACGTTGATGCTATCTGGATA 57.271 39.130 0.00 0.00 0.00 2.59
2215 2252 4.613925 ATGACGTTGATGCTATCTGGAT 57.386 40.909 0.00 0.00 0.00 3.41
2362 2423 1.615392 GCTGAATGCTTTCTTGTGGGT 59.385 47.619 12.96 0.00 38.95 4.51
2567 2629 2.322161 CCAATCGTAGCGGGTAATACG 58.678 52.381 0.00 0.00 44.66 3.06
2619 2681 2.895404 TCAGTCTTAACTAGGCCGTTGT 59.105 45.455 6.30 0.00 33.25 3.32
2622 2684 4.820894 AATTCAGTCTTAACTAGGCCGT 57.179 40.909 0.00 0.00 33.25 5.68
2744 2806 1.539827 GGAGAGGATAGAAGAGCTCGC 59.460 57.143 8.37 4.71 0.00 5.03
2815 2877 1.275666 CTGGGTGGGACAGTGACATA 58.724 55.000 0.00 0.00 41.80 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.