Multiple sequence alignment - TraesCS4A01G013000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G013000 chr4A 100.000 2651 0 0 1 2651 7409327 7406677 0.000000e+00 4896
1 TraesCS4A01G013000 chr4A 88.776 98 7 2 546 642 133572638 133572544 1.670000e-22 117
2 TraesCS4A01G013000 chr4D 90.345 1854 109 44 737 2538 461212371 461214206 0.000000e+00 2368
3 TraesCS4A01G013000 chr4D 83.721 129 18 1 184 312 460996695 460996820 4.640000e-23 119
4 TraesCS4A01G013000 chr4D 88.776 98 9 2 548 643 493004778 493004681 4.640000e-23 119
5 TraesCS4A01G013000 chr4D 88.889 99 8 2 548 645 493013851 493013947 4.640000e-23 119
6 TraesCS4A01G013000 chr4D 98.413 63 1 0 2589 2651 461214606 461214668 7.760000e-21 111
7 TraesCS4A01G013000 chr4B 90.915 1420 70 27 696 2087 576194641 576196029 0.000000e+00 1853
8 TraesCS4A01G013000 chr4B 81.977 516 70 19 963 1473 83337762 83338259 1.470000e-112 416
9 TraesCS4A01G013000 chr4B 80.871 528 73 16 962 1475 146017808 146017295 8.900000e-105 390
10 TraesCS4A01G013000 chr4B 80.561 535 74 17 956 1475 316988518 316989037 4.140000e-103 385
11 TraesCS4A01G013000 chr4B 92.308 104 7 1 1738 1841 201661382 201661280 2.130000e-31 147
12 TraesCS4A01G013000 chr4B 96.512 86 3 0 2566 2651 576196762 576196847 2.750000e-30 143
13 TraesCS4A01G013000 chr4B 87.255 102 11 2 548 647 639146132 639146031 6.000000e-22 115
14 TraesCS4A01G013000 chr7B 83.742 449 59 10 1029 1472 179639061 179638622 1.900000e-111 412
15 TraesCS4A01G013000 chr6B 82.921 445 63 9 1029 1469 19453033 19453468 3.200000e-104 388
16 TraesCS4A01G013000 chr6B 92.308 104 7 1 1738 1841 505324289 505324391 2.130000e-31 147
17 TraesCS4A01G013000 chr2B 78.676 408 48 20 1074 1475 663372743 663372369 4.410000e-58 235
18 TraesCS4A01G013000 chr2B 86.538 104 13 1 540 643 692622302 692622404 2.160000e-21 113
19 TraesCS4A01G013000 chr2B 85.981 107 14 1 540 646 775137311 775137416 2.160000e-21 113
20 TraesCS4A01G013000 chr5D 79.570 279 20 20 1614 1884 459348770 459348521 5.870000e-37 165
21 TraesCS4A01G013000 chr5D 92.308 104 7 1 1738 1841 249070655 249070553 2.130000e-31 147
22 TraesCS4A01G013000 chr2D 92.308 104 7 1 1738 1841 53042182 53042080 2.130000e-31 147
23 TraesCS4A01G013000 chr7D 91.346 104 8 1 1738 1841 2748720 2748618 9.890000e-30 141
24 TraesCS4A01G013000 chr7D 91.346 104 8 1 1738 1841 629749040 629748938 9.890000e-30 141
25 TraesCS4A01G013000 chr3D 90.217 92 9 0 551 642 578772224 578772315 1.290000e-23 121
26 TraesCS4A01G013000 chr6A 88.660 97 11 0 546 642 34220981 34221077 4.640000e-23 119
27 TraesCS4A01G013000 chr6A 87.755 98 11 1 546 643 34212521 34212425 2.160000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G013000 chr4A 7406677 7409327 2650 True 4896.0 4896 100.0000 1 2651 1 chr4A.!!$R1 2650
1 TraesCS4A01G013000 chr4D 461212371 461214668 2297 False 1239.5 2368 94.3790 737 2651 2 chr4D.!!$F3 1914
2 TraesCS4A01G013000 chr4B 576194641 576196847 2206 False 998.0 1853 93.7135 696 2651 2 chr4B.!!$F3 1955
3 TraesCS4A01G013000 chr4B 146017295 146017808 513 True 390.0 390 80.8710 962 1475 1 chr4B.!!$R1 513
4 TraesCS4A01G013000 chr4B 316988518 316989037 519 False 385.0 385 80.5610 956 1475 1 chr4B.!!$F2 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 517 0.035439 GGCGGACCAGAGGAAATCAA 60.035 55.0 0.0 0.0 35.26 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1933 0.804364 TCGATGCACACCAAATCAGC 59.196 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.056094 GTGCAACTCAATGCTTGGAC 57.944 50.000 0.00 0.96 46.54 4.02
47 48 0.961019 TGCAACTCAATGCTTGGACC 59.039 50.000 0.67 0.00 46.54 4.46
48 49 0.244721 GCAACTCAATGCTTGGACCC 59.755 55.000 0.00 0.00 43.06 4.46
49 50 1.619654 CAACTCAATGCTTGGACCCA 58.380 50.000 0.00 0.00 0.00 4.51
50 51 1.962807 CAACTCAATGCTTGGACCCAA 59.037 47.619 1.11 1.11 0.00 4.12
51 52 2.364970 CAACTCAATGCTTGGACCCAAA 59.635 45.455 2.84 0.00 35.33 3.28
52 53 2.893424 ACTCAATGCTTGGACCCAAAT 58.107 42.857 2.84 0.00 35.33 2.32
53 54 3.242011 ACTCAATGCTTGGACCCAAATT 58.758 40.909 2.84 0.00 35.33 1.82
54 55 3.007182 ACTCAATGCTTGGACCCAAATTG 59.993 43.478 15.20 15.20 36.36 2.32
55 56 2.078392 CAATGCTTGGACCCAAATTGC 58.922 47.619 11.19 8.29 35.33 3.56
56 57 0.614812 ATGCTTGGACCCAAATTGCC 59.385 50.000 2.84 0.00 35.33 4.52
57 58 1.079888 GCTTGGACCCAAATTGCCG 60.080 57.895 2.84 0.00 35.33 5.69
58 59 1.531739 GCTTGGACCCAAATTGCCGA 61.532 55.000 2.84 0.00 35.33 5.54
59 60 1.185315 CTTGGACCCAAATTGCCGAT 58.815 50.000 2.84 0.00 35.33 4.18
60 61 1.550072 CTTGGACCCAAATTGCCGATT 59.450 47.619 2.84 0.00 35.33 3.34
61 62 0.894141 TGGACCCAAATTGCCGATTG 59.106 50.000 0.00 0.00 0.00 2.67
62 63 0.460109 GGACCCAAATTGCCGATTGC 60.460 55.000 0.00 0.00 41.77 3.56
76 77 4.925068 GCCGATTGCACAATTCTAAATCT 58.075 39.130 0.00 0.00 40.77 2.40
77 78 5.343249 GCCGATTGCACAATTCTAAATCTT 58.657 37.500 0.00 0.00 40.77 2.40
78 79 5.807011 GCCGATTGCACAATTCTAAATCTTT 59.193 36.000 0.00 0.00 40.77 2.52
79 80 6.311200 GCCGATTGCACAATTCTAAATCTTTT 59.689 34.615 0.00 0.00 40.77 2.27
80 81 7.148590 GCCGATTGCACAATTCTAAATCTTTTT 60.149 33.333 0.00 0.00 40.77 1.94
100 101 4.495459 TTTTTGGGAGGGGGTAATCTTT 57.505 40.909 0.00 0.00 0.00 2.52
101 102 4.495459 TTTTGGGAGGGGGTAATCTTTT 57.505 40.909 0.00 0.00 0.00 2.27
102 103 4.495459 TTTGGGAGGGGGTAATCTTTTT 57.505 40.909 0.00 0.00 0.00 1.94
118 119 2.287251 TTTTTGGGTGGGGGTGGG 59.713 61.111 0.00 0.00 0.00 4.61
119 120 3.412350 TTTTTGGGTGGGGGTGGGG 62.412 63.158 0.00 0.00 0.00 4.96
150 151 8.960591 GGGGGTCATTGATCAATAATATACTTG 58.039 37.037 20.32 7.05 0.00 3.16
151 152 9.520515 GGGGTCATTGATCAATAATATACTTGT 57.479 33.333 20.32 0.00 0.00 3.16
171 172 8.506168 ACTTGTTACAATATGGTGGAACTATG 57.494 34.615 0.00 0.00 42.05 2.23
172 173 6.935741 TGTTACAATATGGTGGAACTATGC 57.064 37.500 4.52 0.00 42.05 3.14
173 174 5.525745 TGTTACAATATGGTGGAACTATGCG 59.474 40.000 4.52 0.00 42.05 4.73
174 175 4.150897 ACAATATGGTGGAACTATGCGT 57.849 40.909 0.00 0.00 38.96 5.24
175 176 3.876914 ACAATATGGTGGAACTATGCGTG 59.123 43.478 0.00 0.00 38.96 5.34
176 177 1.948104 TATGGTGGAACTATGCGTGC 58.052 50.000 0.00 0.00 38.96 5.34
177 178 0.035534 ATGGTGGAACTATGCGTGCA 60.036 50.000 0.00 0.00 36.33 4.57
178 179 0.250510 TGGTGGAACTATGCGTGCAA 60.251 50.000 0.00 0.00 36.74 4.08
179 180 1.094785 GGTGGAACTATGCGTGCAAT 58.905 50.000 0.00 0.00 36.74 3.56
180 181 1.064060 GGTGGAACTATGCGTGCAATC 59.936 52.381 0.00 0.00 36.74 2.67
181 182 2.009774 GTGGAACTATGCGTGCAATCT 58.990 47.619 0.00 0.00 0.00 2.40
182 183 2.420022 GTGGAACTATGCGTGCAATCTT 59.580 45.455 0.00 0.00 0.00 2.40
183 184 2.677836 TGGAACTATGCGTGCAATCTTC 59.322 45.455 0.00 0.00 0.00 2.87
184 185 2.939103 GGAACTATGCGTGCAATCTTCT 59.061 45.455 0.00 0.00 0.00 2.85
185 186 3.001736 GGAACTATGCGTGCAATCTTCTC 59.998 47.826 0.00 0.00 0.00 2.87
186 187 3.251479 ACTATGCGTGCAATCTTCTCA 57.749 42.857 0.00 0.00 0.00 3.27
187 188 3.193263 ACTATGCGTGCAATCTTCTCAG 58.807 45.455 0.00 0.00 0.00 3.35
188 189 2.105006 ATGCGTGCAATCTTCTCAGT 57.895 45.000 0.00 0.00 0.00 3.41
189 190 1.150827 TGCGTGCAATCTTCTCAGTG 58.849 50.000 0.00 0.00 0.00 3.66
190 191 0.445436 GCGTGCAATCTTCTCAGTGG 59.555 55.000 0.00 0.00 0.00 4.00
191 192 1.941209 GCGTGCAATCTTCTCAGTGGA 60.941 52.381 0.00 0.00 0.00 4.02
192 193 1.998315 CGTGCAATCTTCTCAGTGGAG 59.002 52.381 0.00 0.00 42.80 3.86
193 194 2.611473 CGTGCAATCTTCTCAGTGGAGT 60.611 50.000 0.00 0.00 42.05 3.85
194 195 2.740981 GTGCAATCTTCTCAGTGGAGTG 59.259 50.000 0.00 0.00 42.05 3.51
195 196 1.736681 GCAATCTTCTCAGTGGAGTGC 59.263 52.381 4.26 4.26 42.17 4.40
196 197 2.354259 CAATCTTCTCAGTGGAGTGCC 58.646 52.381 0.00 0.00 42.05 5.01
197 198 1.949799 ATCTTCTCAGTGGAGTGCCT 58.050 50.000 0.00 0.00 42.05 4.75
198 199 1.261480 TCTTCTCAGTGGAGTGCCTC 58.739 55.000 0.00 0.00 42.05 4.70
199 200 0.972134 CTTCTCAGTGGAGTGCCTCA 59.028 55.000 4.85 0.00 42.05 3.86
200 201 1.554160 CTTCTCAGTGGAGTGCCTCAT 59.446 52.381 4.85 0.00 42.05 2.90
201 202 1.189752 TCTCAGTGGAGTGCCTCATC 58.810 55.000 4.85 0.00 42.05 2.92
202 203 0.177604 CTCAGTGGAGTGCCTCATCC 59.822 60.000 4.85 0.00 36.36 3.51
203 204 0.545071 TCAGTGGAGTGCCTCATCCA 60.545 55.000 4.85 0.00 43.34 3.41
204 205 0.545171 CAGTGGAGTGCCTCATCCAT 59.455 55.000 0.00 0.00 46.87 3.41
205 206 0.835941 AGTGGAGTGCCTCATCCATC 59.164 55.000 0.00 0.00 46.87 3.51
206 207 0.531532 GTGGAGTGCCTCATCCATCG 60.532 60.000 0.00 0.00 46.87 3.84
207 208 1.596477 GGAGTGCCTCATCCATCGC 60.596 63.158 4.85 0.00 35.54 4.58
208 209 1.445095 GAGTGCCTCATCCATCGCT 59.555 57.895 0.00 0.00 0.00 4.93
209 210 0.179062 GAGTGCCTCATCCATCGCTT 60.179 55.000 0.00 0.00 0.00 4.68
210 211 1.069204 GAGTGCCTCATCCATCGCTTA 59.931 52.381 0.00 0.00 0.00 3.09
211 212 1.486310 AGTGCCTCATCCATCGCTTAA 59.514 47.619 0.00 0.00 0.00 1.85
212 213 1.599542 GTGCCTCATCCATCGCTTAAC 59.400 52.381 0.00 0.00 0.00 2.01
213 214 0.861837 GCCTCATCCATCGCTTAACG 59.138 55.000 0.00 0.00 45.62 3.18
214 215 0.861837 CCTCATCCATCGCTTAACGC 59.138 55.000 0.00 0.00 43.23 4.84
223 224 2.701606 GCTTAACGCGTGGCTAGC 59.298 61.111 14.98 15.58 0.00 3.42
236 237 3.688553 GCTAGCGCCATTTACCTCT 57.311 52.632 2.29 0.00 0.00 3.69
237 238 2.814280 GCTAGCGCCATTTACCTCTA 57.186 50.000 2.29 0.00 0.00 2.43
238 239 2.678324 GCTAGCGCCATTTACCTCTAG 58.322 52.381 2.29 0.00 0.00 2.43
239 240 2.610727 GCTAGCGCCATTTACCTCTAGG 60.611 54.545 2.29 0.00 42.17 3.02
257 258 7.998580 CCTCTAGGTCGATTTTAACTAACTCT 58.001 38.462 0.00 0.00 0.00 3.24
258 259 9.118300 CCTCTAGGTCGATTTTAACTAACTCTA 57.882 37.037 0.00 0.00 0.00 2.43
283 284 8.833231 ATATCCTTTTCACCATACATTAGTCG 57.167 34.615 0.00 0.00 0.00 4.18
284 285 6.045072 TCCTTTTCACCATACATTAGTCGT 57.955 37.500 0.00 0.00 0.00 4.34
285 286 6.469410 TCCTTTTCACCATACATTAGTCGTT 58.531 36.000 0.00 0.00 0.00 3.85
286 287 6.938030 TCCTTTTCACCATACATTAGTCGTTT 59.062 34.615 0.00 0.00 0.00 3.60
287 288 7.021196 CCTTTTCACCATACATTAGTCGTTTG 58.979 38.462 0.00 0.00 0.00 2.93
288 289 7.094975 CCTTTTCACCATACATTAGTCGTTTGA 60.095 37.037 0.00 0.00 0.00 2.69
289 290 7.915293 TTTCACCATACATTAGTCGTTTGAT 57.085 32.000 0.00 0.00 0.00 2.57
290 291 7.534085 TTCACCATACATTAGTCGTTTGATC 57.466 36.000 0.00 0.00 0.00 2.92
291 292 6.873997 TCACCATACATTAGTCGTTTGATCT 58.126 36.000 0.00 0.00 0.00 2.75
292 293 6.978659 TCACCATACATTAGTCGTTTGATCTC 59.021 38.462 0.00 0.00 0.00 2.75
293 294 6.756542 CACCATACATTAGTCGTTTGATCTCA 59.243 38.462 0.00 0.00 0.00 3.27
294 295 7.439356 CACCATACATTAGTCGTTTGATCTCAT 59.561 37.037 0.00 0.00 0.00 2.90
295 296 7.987458 ACCATACATTAGTCGTTTGATCTCATT 59.013 33.333 0.00 0.00 0.00 2.57
296 297 8.830580 CCATACATTAGTCGTTTGATCTCATTT 58.169 33.333 0.00 0.00 0.00 2.32
299 300 8.197988 ACATTAGTCGTTTGATCTCATTTACC 57.802 34.615 0.00 0.00 0.00 2.85
300 301 7.822334 ACATTAGTCGTTTGATCTCATTTACCA 59.178 33.333 0.00 0.00 0.00 3.25
301 302 8.664798 CATTAGTCGTTTGATCTCATTTACCAA 58.335 33.333 0.00 0.00 0.00 3.67
302 303 6.727824 AGTCGTTTGATCTCATTTACCAAG 57.272 37.500 0.00 0.00 0.00 3.61
303 304 6.231211 AGTCGTTTGATCTCATTTACCAAGT 58.769 36.000 0.00 0.00 0.00 3.16
304 305 6.147821 AGTCGTTTGATCTCATTTACCAAGTG 59.852 38.462 0.00 0.00 0.00 3.16
305 306 5.411361 TCGTTTGATCTCATTTACCAAGTGG 59.589 40.000 0.00 0.00 42.17 4.00
306 307 5.391950 CGTTTGATCTCATTTACCAAGTGGG 60.392 44.000 1.69 0.00 44.81 4.61
320 321 5.097742 CCAAGTGGGTGTATTATCTGACA 57.902 43.478 0.00 0.00 0.00 3.58
321 322 5.496556 CCAAGTGGGTGTATTATCTGACAA 58.503 41.667 0.00 0.00 0.00 3.18
322 323 5.943416 CCAAGTGGGTGTATTATCTGACAAA 59.057 40.000 0.00 0.00 0.00 2.83
323 324 6.603201 CCAAGTGGGTGTATTATCTGACAAAT 59.397 38.462 0.00 0.00 0.00 2.32
324 325 7.773224 CCAAGTGGGTGTATTATCTGACAAATA 59.227 37.037 0.00 0.00 0.00 1.40
325 326 9.173021 CAAGTGGGTGTATTATCTGACAAATAA 57.827 33.333 0.00 0.00 0.00 1.40
326 327 9.747898 AAGTGGGTGTATTATCTGACAAATAAA 57.252 29.630 0.00 0.00 0.00 1.40
327 328 9.396022 AGTGGGTGTATTATCTGACAAATAAAG 57.604 33.333 0.00 0.00 0.00 1.85
328 329 9.174166 GTGGGTGTATTATCTGACAAATAAAGT 57.826 33.333 0.00 0.00 0.00 2.66
329 330 9.747898 TGGGTGTATTATCTGACAAATAAAGTT 57.252 29.630 0.00 0.00 0.00 2.66
369 370 6.933514 AAAAATTGATGTATCACAAGGGGT 57.066 33.333 0.00 0.00 36.36 4.95
370 371 6.530019 AAAATTGATGTATCACAAGGGGTC 57.470 37.500 0.00 0.00 36.36 4.46
371 372 3.644966 TTGATGTATCACAAGGGGTCC 57.355 47.619 0.00 0.00 36.36 4.46
372 373 1.484653 TGATGTATCACAAGGGGTCCG 59.515 52.381 0.00 0.00 0.00 4.79
373 374 1.760613 GATGTATCACAAGGGGTCCGA 59.239 52.381 0.00 0.00 0.00 4.55
374 375 0.899720 TGTATCACAAGGGGTCCGAC 59.100 55.000 0.00 0.00 0.00 4.79
375 376 0.177373 GTATCACAAGGGGTCCGACC 59.823 60.000 9.30 9.30 37.60 4.79
376 377 0.252330 TATCACAAGGGGTCCGACCA 60.252 55.000 19.43 0.00 41.02 4.02
377 378 0.914417 ATCACAAGGGGTCCGACCAT 60.914 55.000 19.43 4.32 41.02 3.55
378 379 1.131303 TCACAAGGGGTCCGACCATT 61.131 55.000 19.43 10.28 41.02 3.16
379 380 0.251165 CACAAGGGGTCCGACCATTT 60.251 55.000 19.43 9.58 41.02 2.32
380 381 0.037734 ACAAGGGGTCCGACCATTTC 59.962 55.000 19.43 5.74 41.02 2.17
389 390 2.767536 CGACCATTTCGCCATCACT 58.232 52.632 0.00 0.00 41.87 3.41
390 391 1.934589 CGACCATTTCGCCATCACTA 58.065 50.000 0.00 0.00 41.87 2.74
391 392 2.276201 CGACCATTTCGCCATCACTAA 58.724 47.619 0.00 0.00 41.87 2.24
392 393 2.872245 CGACCATTTCGCCATCACTAAT 59.128 45.455 0.00 0.00 41.87 1.73
393 394 3.312421 CGACCATTTCGCCATCACTAATT 59.688 43.478 0.00 0.00 41.87 1.40
394 395 4.601019 GACCATTTCGCCATCACTAATTG 58.399 43.478 0.00 0.00 0.00 2.32
395 396 4.269183 ACCATTTCGCCATCACTAATTGA 58.731 39.130 0.00 0.00 39.11 2.57
396 397 4.704540 ACCATTTCGCCATCACTAATTGAA 59.295 37.500 0.00 0.00 37.92 2.69
397 398 5.036737 CCATTTCGCCATCACTAATTGAAC 58.963 41.667 0.00 0.00 37.92 3.18
398 399 4.695217 TTTCGCCATCACTAATTGAACC 57.305 40.909 0.00 0.00 37.92 3.62
399 400 2.276201 TCGCCATCACTAATTGAACCG 58.724 47.619 0.00 0.00 37.92 4.44
400 401 1.268032 CGCCATCACTAATTGAACCGC 60.268 52.381 0.00 0.00 37.92 5.68
401 402 2.017049 GCCATCACTAATTGAACCGCT 58.983 47.619 0.00 0.00 37.92 5.52
402 403 2.423538 GCCATCACTAATTGAACCGCTT 59.576 45.455 0.00 0.00 37.92 4.68
403 404 3.731867 GCCATCACTAATTGAACCGCTTG 60.732 47.826 0.00 0.00 37.92 4.01
404 405 3.689161 CCATCACTAATTGAACCGCTTGA 59.311 43.478 0.00 0.00 37.92 3.02
405 406 4.201851 CCATCACTAATTGAACCGCTTGAG 60.202 45.833 0.00 0.00 37.92 3.02
406 407 2.742053 TCACTAATTGAACCGCTTGAGC 59.258 45.455 0.00 0.00 37.78 4.26
416 417 3.583383 GCTTGAGCGCAGTCCATT 58.417 55.556 11.47 0.00 0.00 3.16
417 418 1.878775 GCTTGAGCGCAGTCCATTT 59.121 52.632 11.47 0.00 0.00 2.32
418 419 0.179179 GCTTGAGCGCAGTCCATTTC 60.179 55.000 11.47 0.00 0.00 2.17
419 420 0.449388 CTTGAGCGCAGTCCATTTCC 59.551 55.000 11.47 0.00 0.00 3.13
420 421 0.250684 TTGAGCGCAGTCCATTTCCA 60.251 50.000 11.47 0.00 0.00 3.53
421 422 0.955428 TGAGCGCAGTCCATTTCCAC 60.955 55.000 11.47 0.00 0.00 4.02
422 423 1.970917 GAGCGCAGTCCATTTCCACG 61.971 60.000 11.47 0.00 0.00 4.94
423 424 3.039202 GCGCAGTCCATTTCCACGG 62.039 63.158 0.30 0.00 0.00 4.94
424 425 1.671054 CGCAGTCCATTTCCACGGT 60.671 57.895 0.00 0.00 0.00 4.83
425 426 1.234615 CGCAGTCCATTTCCACGGTT 61.235 55.000 0.00 0.00 0.00 4.44
426 427 1.816074 GCAGTCCATTTCCACGGTTA 58.184 50.000 0.00 0.00 0.00 2.85
427 428 1.737793 GCAGTCCATTTCCACGGTTAG 59.262 52.381 0.00 0.00 0.00 2.34
428 429 1.737793 CAGTCCATTTCCACGGTTAGC 59.262 52.381 0.00 0.00 0.00 3.09
429 430 1.628846 AGTCCATTTCCACGGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
430 431 2.039879 AGTCCATTTCCACGGTTAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
431 432 2.418976 GTCCATTTCCACGGTTAGCTTC 59.581 50.000 0.00 0.00 0.00 3.86
432 433 2.039216 TCCATTTCCACGGTTAGCTTCA 59.961 45.455 0.00 0.00 0.00 3.02
433 434 2.161609 CCATTTCCACGGTTAGCTTCAC 59.838 50.000 0.00 0.00 0.00 3.18
434 435 1.886886 TTTCCACGGTTAGCTTCACC 58.113 50.000 0.00 0.00 0.00 4.02
435 436 0.035739 TTCCACGGTTAGCTTCACCC 59.964 55.000 8.78 0.00 0.00 4.61
436 437 1.376812 CCACGGTTAGCTTCACCCC 60.377 63.158 8.78 0.00 0.00 4.95
437 438 1.376812 CACGGTTAGCTTCACCCCC 60.377 63.158 8.78 0.00 0.00 5.40
438 439 1.538135 ACGGTTAGCTTCACCCCCT 60.538 57.895 8.78 0.00 0.00 4.79
439 440 1.131928 ACGGTTAGCTTCACCCCCTT 61.132 55.000 8.78 0.00 0.00 3.95
440 441 0.392595 CGGTTAGCTTCACCCCCTTC 60.393 60.000 8.78 0.00 0.00 3.46
441 442 0.992695 GGTTAGCTTCACCCCCTTCT 59.007 55.000 0.00 0.00 0.00 2.85
442 443 2.193993 GGTTAGCTTCACCCCCTTCTA 58.806 52.381 0.00 0.00 0.00 2.10
443 444 2.170817 GGTTAGCTTCACCCCCTTCTAG 59.829 54.545 0.00 0.00 0.00 2.43
444 445 2.838813 GTTAGCTTCACCCCCTTCTAGT 59.161 50.000 0.00 0.00 0.00 2.57
445 446 2.942604 AGCTTCACCCCCTTCTAGTA 57.057 50.000 0.00 0.00 0.00 1.82
446 447 3.423058 AGCTTCACCCCCTTCTAGTAT 57.577 47.619 0.00 0.00 0.00 2.12
447 448 4.554553 AGCTTCACCCCCTTCTAGTATA 57.445 45.455 0.00 0.00 0.00 1.47
448 449 4.892198 AGCTTCACCCCCTTCTAGTATAA 58.108 43.478 0.00 0.00 0.00 0.98
449 450 4.654724 AGCTTCACCCCCTTCTAGTATAAC 59.345 45.833 0.00 0.00 0.00 1.89
450 451 4.202336 GCTTCACCCCCTTCTAGTATAACC 60.202 50.000 0.00 0.00 0.00 2.85
451 452 3.932601 TCACCCCCTTCTAGTATAACCC 58.067 50.000 0.00 0.00 0.00 4.11
452 453 2.631545 CACCCCCTTCTAGTATAACCCG 59.368 54.545 0.00 0.00 0.00 5.28
453 454 2.519691 ACCCCCTTCTAGTATAACCCGA 59.480 50.000 0.00 0.00 0.00 5.14
454 455 3.163467 CCCCCTTCTAGTATAACCCGAG 58.837 54.545 0.00 0.00 0.00 4.63
455 456 3.181425 CCCCCTTCTAGTATAACCCGAGA 60.181 52.174 0.00 0.00 0.00 4.04
456 457 4.477249 CCCCTTCTAGTATAACCCGAGAA 58.523 47.826 0.00 0.00 0.00 2.87
457 458 5.085219 CCCCTTCTAGTATAACCCGAGAAT 58.915 45.833 0.00 0.00 0.00 2.40
458 459 5.185442 CCCCTTCTAGTATAACCCGAGAATC 59.815 48.000 0.00 0.00 0.00 2.52
470 471 3.498676 GAGAATCGCATCGGGGTAG 57.501 57.895 0.00 0.00 0.00 3.18
471 472 0.959553 GAGAATCGCATCGGGGTAGA 59.040 55.000 0.00 0.00 0.00 2.59
472 473 0.674534 AGAATCGCATCGGGGTAGAC 59.325 55.000 0.00 0.00 0.00 2.59
473 474 0.387929 GAATCGCATCGGGGTAGACA 59.612 55.000 0.00 0.00 0.00 3.41
474 475 0.389391 AATCGCATCGGGGTAGACAG 59.611 55.000 0.00 0.00 0.00 3.51
475 476 0.467474 ATCGCATCGGGGTAGACAGA 60.467 55.000 0.00 0.00 0.00 3.41
476 477 0.467474 TCGCATCGGGGTAGACAGAT 60.467 55.000 0.00 0.00 0.00 2.90
477 478 0.039074 CGCATCGGGGTAGACAGATC 60.039 60.000 0.00 0.00 0.00 2.75
478 479 0.318762 GCATCGGGGTAGACAGATCC 59.681 60.000 0.00 0.00 0.00 3.36
479 480 1.704641 CATCGGGGTAGACAGATCCA 58.295 55.000 0.00 0.00 0.00 3.41
480 481 2.251818 CATCGGGGTAGACAGATCCAT 58.748 52.381 0.00 0.00 0.00 3.41
481 482 3.431415 CATCGGGGTAGACAGATCCATA 58.569 50.000 0.00 0.00 0.00 2.74
482 483 3.156288 TCGGGGTAGACAGATCCATAG 57.844 52.381 0.00 0.00 0.00 2.23
483 484 2.714793 TCGGGGTAGACAGATCCATAGA 59.285 50.000 0.00 0.00 0.00 1.98
484 485 3.139584 TCGGGGTAGACAGATCCATAGAA 59.860 47.826 0.00 0.00 0.00 2.10
485 486 3.895656 CGGGGTAGACAGATCCATAGAAA 59.104 47.826 0.00 0.00 0.00 2.52
486 487 4.021894 CGGGGTAGACAGATCCATAGAAAG 60.022 50.000 0.00 0.00 0.00 2.62
487 488 5.148502 GGGGTAGACAGATCCATAGAAAGA 58.851 45.833 0.00 0.00 0.00 2.52
488 489 5.602978 GGGGTAGACAGATCCATAGAAAGAA 59.397 44.000 0.00 0.00 0.00 2.52
489 490 6.239458 GGGGTAGACAGATCCATAGAAAGAAG 60.239 46.154 0.00 0.00 0.00 2.85
490 491 6.239458 GGGTAGACAGATCCATAGAAAGAAGG 60.239 46.154 0.00 0.00 0.00 3.46
491 492 5.885449 AGACAGATCCATAGAAAGAAGGG 57.115 43.478 0.00 0.00 0.00 3.95
492 493 4.657969 AGACAGATCCATAGAAAGAAGGGG 59.342 45.833 0.00 0.00 0.00 4.79
493 494 3.137360 ACAGATCCATAGAAAGAAGGGGC 59.863 47.826 0.00 0.00 0.00 5.80
494 495 2.370189 AGATCCATAGAAAGAAGGGGCG 59.630 50.000 0.00 0.00 0.00 6.13
495 496 0.837272 TCCATAGAAAGAAGGGGCGG 59.163 55.000 0.00 0.00 0.00 6.13
496 497 0.837272 CCATAGAAAGAAGGGGCGGA 59.163 55.000 0.00 0.00 0.00 5.54
497 498 1.202698 CCATAGAAAGAAGGGGCGGAG 60.203 57.143 0.00 0.00 0.00 4.63
498 499 1.132500 ATAGAAAGAAGGGGCGGAGG 58.868 55.000 0.00 0.00 0.00 4.30
511 512 2.683933 GGAGGCGGACCAGAGGAA 60.684 66.667 0.00 0.00 39.06 3.36
512 513 2.291043 GGAGGCGGACCAGAGGAAA 61.291 63.158 0.00 0.00 39.06 3.13
513 514 1.627297 GGAGGCGGACCAGAGGAAAT 61.627 60.000 0.00 0.00 39.06 2.17
514 515 0.179070 GAGGCGGACCAGAGGAAATC 60.179 60.000 0.00 0.00 39.06 2.17
515 516 0.909610 AGGCGGACCAGAGGAAATCA 60.910 55.000 0.00 0.00 39.06 2.57
516 517 0.035439 GGCGGACCAGAGGAAATCAA 60.035 55.000 0.00 0.00 35.26 2.57
517 518 1.373570 GCGGACCAGAGGAAATCAAG 58.626 55.000 0.00 0.00 0.00 3.02
518 519 1.066143 GCGGACCAGAGGAAATCAAGA 60.066 52.381 0.00 0.00 0.00 3.02
519 520 2.615493 GCGGACCAGAGGAAATCAAGAA 60.615 50.000 0.00 0.00 0.00 2.52
520 521 3.265791 CGGACCAGAGGAAATCAAGAAG 58.734 50.000 0.00 0.00 0.00 2.85
521 522 3.055819 CGGACCAGAGGAAATCAAGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
522 523 4.563580 CGGACCAGAGGAAATCAAGAAGAA 60.564 45.833 0.00 0.00 0.00 2.52
523 524 4.940654 GGACCAGAGGAAATCAAGAAGAAG 59.059 45.833 0.00 0.00 0.00 2.85
524 525 5.513962 GGACCAGAGGAAATCAAGAAGAAGT 60.514 44.000 0.00 0.00 0.00 3.01
525 526 5.555966 ACCAGAGGAAATCAAGAAGAAGTC 58.444 41.667 0.00 0.00 0.00 3.01
526 527 4.629200 CCAGAGGAAATCAAGAAGAAGTCG 59.371 45.833 0.00 0.00 0.00 4.18
527 528 5.473931 CAGAGGAAATCAAGAAGAAGTCGA 58.526 41.667 0.00 0.00 0.00 4.20
528 529 5.576384 CAGAGGAAATCAAGAAGAAGTCGAG 59.424 44.000 0.00 0.00 0.00 4.04
529 530 4.826556 AGGAAATCAAGAAGAAGTCGAGG 58.173 43.478 0.00 0.00 0.00 4.63
530 531 4.528596 AGGAAATCAAGAAGAAGTCGAGGA 59.471 41.667 0.00 0.00 0.00 3.71
531 532 5.012148 AGGAAATCAAGAAGAAGTCGAGGAA 59.988 40.000 0.00 0.00 0.00 3.36
532 533 5.350091 GGAAATCAAGAAGAAGTCGAGGAAG 59.650 44.000 0.00 0.00 0.00 3.46
533 534 5.730296 AATCAAGAAGAAGTCGAGGAAGA 57.270 39.130 0.00 0.00 0.00 2.87
534 535 5.930837 ATCAAGAAGAAGTCGAGGAAGAT 57.069 39.130 0.00 0.00 0.00 2.40
535 536 5.317733 TCAAGAAGAAGTCGAGGAAGATC 57.682 43.478 0.00 0.00 0.00 2.75
536 537 4.101942 CAAGAAGAAGTCGAGGAAGATCG 58.898 47.826 0.00 0.00 44.07 3.69
537 538 3.349022 AGAAGAAGTCGAGGAAGATCGT 58.651 45.455 0.00 0.00 43.20 3.73
538 539 3.375922 AGAAGAAGTCGAGGAAGATCGTC 59.624 47.826 0.00 0.00 43.20 4.20
543 544 1.009449 CGAGGAAGATCGTCGGAGC 60.009 63.158 13.02 0.00 46.98 4.70
544 545 1.009449 GAGGAAGATCGTCGGAGCG 60.009 63.158 2.45 0.00 32.66 5.03
545 546 2.026301 GGAAGATCGTCGGAGCGG 59.974 66.667 2.45 0.00 32.66 5.52
546 547 2.655685 GAAGATCGTCGGAGCGGC 60.656 66.667 0.00 0.00 32.66 6.53
547 548 4.208686 AAGATCGTCGGAGCGGCC 62.209 66.667 0.00 0.00 32.66 6.13
556 557 4.660938 GGAGCGGCCCACCACTTT 62.661 66.667 0.00 0.00 34.57 2.66
557 558 2.597510 GAGCGGCCCACCACTTTT 60.598 61.111 0.00 0.00 34.57 2.27
558 559 2.597510 AGCGGCCCACCACTTTTC 60.598 61.111 0.00 0.00 34.57 2.29
559 560 2.597510 GCGGCCCACCACTTTTCT 60.598 61.111 0.00 0.00 34.57 2.52
560 561 2.919494 GCGGCCCACCACTTTTCTG 61.919 63.158 0.00 0.00 34.57 3.02
561 562 1.228124 CGGCCCACCACTTTTCTGA 60.228 57.895 0.00 0.00 34.57 3.27
562 563 0.609131 CGGCCCACCACTTTTCTGAT 60.609 55.000 0.00 0.00 34.57 2.90
563 564 1.339631 CGGCCCACCACTTTTCTGATA 60.340 52.381 0.00 0.00 34.57 2.15
564 565 2.369394 GGCCCACCACTTTTCTGATAG 58.631 52.381 0.00 0.00 35.26 2.08
565 566 2.290960 GGCCCACCACTTTTCTGATAGT 60.291 50.000 0.00 0.00 35.26 2.12
566 567 3.421844 GCCCACCACTTTTCTGATAGTT 58.578 45.455 0.00 0.00 0.00 2.24
567 568 3.826729 GCCCACCACTTTTCTGATAGTTT 59.173 43.478 0.00 0.00 0.00 2.66
568 569 4.280929 GCCCACCACTTTTCTGATAGTTTT 59.719 41.667 0.00 0.00 0.00 2.43
569 570 5.221441 GCCCACCACTTTTCTGATAGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
611 612 9.476202 AAAAGGTAGTTTCTTGCAATGATAAAC 57.524 29.630 0.00 8.87 0.00 2.01
612 613 7.158099 AGGTAGTTTCTTGCAATGATAAACC 57.842 36.000 16.67 13.20 31.87 3.27
613 614 6.027749 GGTAGTTTCTTGCAATGATAAACCG 58.972 40.000 16.67 0.00 31.87 4.44
614 615 5.705609 AGTTTCTTGCAATGATAAACCGT 57.294 34.783 16.67 4.30 31.87 4.83
615 616 6.811253 AGTTTCTTGCAATGATAAACCGTA 57.189 33.333 16.67 0.00 31.87 4.02
616 617 7.209471 AGTTTCTTGCAATGATAAACCGTAA 57.791 32.000 16.67 0.00 31.87 3.18
617 618 7.826690 AGTTTCTTGCAATGATAAACCGTAAT 58.173 30.769 16.67 3.33 31.87 1.89
618 619 7.754924 AGTTTCTTGCAATGATAAACCGTAATG 59.245 33.333 16.67 0.00 31.87 1.90
619 620 6.751514 TCTTGCAATGATAAACCGTAATGT 57.248 33.333 0.00 0.00 0.00 2.71
620 621 6.550843 TCTTGCAATGATAAACCGTAATGTG 58.449 36.000 0.00 0.00 0.00 3.21
621 622 5.242069 TGCAATGATAAACCGTAATGTGG 57.758 39.130 0.00 0.00 0.00 4.17
622 623 4.702612 TGCAATGATAAACCGTAATGTGGT 59.297 37.500 0.00 0.00 42.98 4.16
623 624 5.880887 TGCAATGATAAACCGTAATGTGGTA 59.119 36.000 0.00 0.00 39.29 3.25
624 625 6.037720 TGCAATGATAAACCGTAATGTGGTAG 59.962 38.462 0.00 0.00 39.29 3.18
625 626 6.037830 GCAATGATAAACCGTAATGTGGTAGT 59.962 38.462 0.00 0.00 39.29 2.73
626 627 7.414762 GCAATGATAAACCGTAATGTGGTAGTT 60.415 37.037 0.00 0.00 39.29 2.24
627 628 8.455682 CAATGATAAACCGTAATGTGGTAGTTT 58.544 33.333 0.00 0.00 39.29 2.66
628 629 7.982761 TGATAAACCGTAATGTGGTAGTTTT 57.017 32.000 0.00 0.00 39.29 2.43
629 630 8.393671 TGATAAACCGTAATGTGGTAGTTTTT 57.606 30.769 0.00 0.00 39.29 1.94
648 649 5.759506 TTTTTGCTATTCACTCCGTTGAA 57.240 34.783 0.00 0.00 39.79 2.69
649 650 4.742438 TTTGCTATTCACTCCGTTGAAC 57.258 40.909 0.00 0.00 38.31 3.18
650 651 3.678056 TGCTATTCACTCCGTTGAACT 57.322 42.857 0.00 0.00 38.31 3.01
651 652 4.794278 TGCTATTCACTCCGTTGAACTA 57.206 40.909 0.00 0.00 38.31 2.24
652 653 5.339008 TGCTATTCACTCCGTTGAACTAT 57.661 39.130 0.00 0.00 38.31 2.12
653 654 5.109210 TGCTATTCACTCCGTTGAACTATG 58.891 41.667 0.00 0.00 38.31 2.23
654 655 5.109903 GCTATTCACTCCGTTGAACTATGT 58.890 41.667 0.00 0.00 38.31 2.29
655 656 5.581085 GCTATTCACTCCGTTGAACTATGTT 59.419 40.000 0.00 0.00 38.31 2.71
656 657 5.862924 ATTCACTCCGTTGAACTATGTTG 57.137 39.130 0.00 0.00 38.31 3.33
657 658 3.064207 TCACTCCGTTGAACTATGTTGC 58.936 45.455 0.00 0.00 0.00 4.17
658 659 2.066262 ACTCCGTTGAACTATGTTGCG 58.934 47.619 0.00 0.00 0.00 4.85
659 660 0.793861 TCCGTTGAACTATGTTGCGC 59.206 50.000 0.00 0.00 0.00 6.09
660 661 0.518355 CCGTTGAACTATGTTGCGCG 60.518 55.000 0.00 0.00 0.00 6.86
661 662 0.518355 CGTTGAACTATGTTGCGCGG 60.518 55.000 8.83 0.00 0.00 6.46
662 663 0.793861 GTTGAACTATGTTGCGCGGA 59.206 50.000 8.83 0.00 0.00 5.54
663 664 1.396996 GTTGAACTATGTTGCGCGGAT 59.603 47.619 8.83 0.00 0.00 4.18
664 665 1.732941 TGAACTATGTTGCGCGGATT 58.267 45.000 8.83 0.00 0.00 3.01
665 666 1.396648 TGAACTATGTTGCGCGGATTG 59.603 47.619 8.83 0.00 0.00 2.67
666 667 1.396996 GAACTATGTTGCGCGGATTGT 59.603 47.619 8.83 0.00 0.00 2.71
667 668 2.303163 ACTATGTTGCGCGGATTGTA 57.697 45.000 8.83 0.00 0.00 2.41
668 669 2.623535 ACTATGTTGCGCGGATTGTAA 58.376 42.857 8.83 0.00 0.00 2.41
669 670 3.202906 ACTATGTTGCGCGGATTGTAAT 58.797 40.909 8.83 0.00 0.00 1.89
670 671 2.755836 ATGTTGCGCGGATTGTAATC 57.244 45.000 8.83 0.00 34.66 1.75
671 672 1.732941 TGTTGCGCGGATTGTAATCT 58.267 45.000 8.83 0.00 35.73 2.40
672 673 2.080693 TGTTGCGCGGATTGTAATCTT 58.919 42.857 8.83 0.00 35.73 2.40
673 674 2.159585 TGTTGCGCGGATTGTAATCTTG 60.160 45.455 8.83 0.21 35.73 3.02
674 675 2.017138 TGCGCGGATTGTAATCTTGA 57.983 45.000 8.83 0.00 35.73 3.02
675 676 2.560504 TGCGCGGATTGTAATCTTGAT 58.439 42.857 8.83 0.00 35.73 2.57
676 677 2.287644 TGCGCGGATTGTAATCTTGATG 59.712 45.455 8.83 0.00 35.73 3.07
677 678 2.287915 GCGCGGATTGTAATCTTGATGT 59.712 45.455 8.83 0.00 35.73 3.06
678 679 3.242739 GCGCGGATTGTAATCTTGATGTT 60.243 43.478 8.83 0.00 35.73 2.71
679 680 4.730613 GCGCGGATTGTAATCTTGATGTTT 60.731 41.667 8.83 0.00 35.73 2.83
680 681 5.503357 GCGCGGATTGTAATCTTGATGTTTA 60.503 40.000 8.83 0.00 35.73 2.01
681 682 5.901884 CGCGGATTGTAATCTTGATGTTTAC 59.098 40.000 0.00 0.00 35.73 2.01
682 683 6.238103 CGCGGATTGTAATCTTGATGTTTACT 60.238 38.462 0.00 0.00 35.73 2.24
683 684 7.126398 GCGGATTGTAATCTTGATGTTTACTC 58.874 38.462 4.75 0.00 35.73 2.59
684 685 7.337718 CGGATTGTAATCTTGATGTTTACTCG 58.662 38.462 4.75 0.00 35.73 4.18
685 686 7.126398 GGATTGTAATCTTGATGTTTACTCGC 58.874 38.462 4.75 0.00 35.73 5.03
686 687 7.201609 GGATTGTAATCTTGATGTTTACTCGCA 60.202 37.037 4.75 0.00 35.73 5.10
687 688 7.428282 TTGTAATCTTGATGTTTACTCGCAA 57.572 32.000 0.00 0.00 33.95 4.85
688 689 7.428282 TGTAATCTTGATGTTTACTCGCAAA 57.572 32.000 0.00 0.00 33.95 3.68
689 690 7.866729 TGTAATCTTGATGTTTACTCGCAAAA 58.133 30.769 0.00 0.00 33.95 2.44
690 691 8.346300 TGTAATCTTGATGTTTACTCGCAAAAA 58.654 29.630 0.00 0.00 33.95 1.94
730 734 8.592155 TGTTCGAGTTATACAAATTTCTCATCG 58.408 33.333 0.00 0.00 0.00 3.84
731 735 7.161829 TCGAGTTATACAAATTTCTCATCGC 57.838 36.000 0.00 0.00 0.00 4.58
732 736 6.754675 TCGAGTTATACAAATTTCTCATCGCA 59.245 34.615 0.00 0.00 0.00 5.10
733 737 7.043391 TCGAGTTATACAAATTTCTCATCGCAG 60.043 37.037 0.00 0.00 0.00 5.18
734 738 7.251704 AGTTATACAAATTTCTCATCGCAGG 57.748 36.000 0.00 0.00 0.00 4.85
735 739 6.260936 AGTTATACAAATTTCTCATCGCAGGG 59.739 38.462 0.00 0.00 0.00 4.45
739 743 4.280677 ACAAATTTCTCATCGCAGGGAAAA 59.719 37.500 6.15 0.00 32.60 2.29
740 744 5.047092 ACAAATTTCTCATCGCAGGGAAAAT 60.047 36.000 6.15 0.00 32.60 1.82
768 778 1.956477 ACAACATTCTGAACAGTGCCC 59.044 47.619 0.00 0.00 0.00 5.36
801 818 1.330655 ATCCTTGATCCGACGGCTGT 61.331 55.000 9.66 0.00 0.00 4.40
815 832 1.868251 GCTGTCCGTCGCTAAGTCG 60.868 63.158 0.00 0.00 0.00 4.18
867 884 3.646715 TGCCTTCCTTCCCCACGG 61.647 66.667 0.00 0.00 0.00 4.94
871 888 3.920093 CTTCCTTCCCCACGGCCAC 62.920 68.421 2.24 0.00 0.00 5.01
874 891 4.760047 CTTCCCCACGGCCACGAG 62.760 72.222 2.24 0.00 44.60 4.18
1717 1783 5.932303 GTGACAGTTACAGTATGATGGTTGT 59.068 40.000 0.00 0.00 39.69 3.32
1718 1784 6.426937 GTGACAGTTACAGTATGATGGTTGTT 59.573 38.462 0.00 0.00 39.69 2.83
1719 1785 7.601130 GTGACAGTTACAGTATGATGGTTGTTA 59.399 37.037 0.00 0.00 39.69 2.41
1753 1819 2.356069 GAGGATTGAAAATCCACTCGGC 59.644 50.000 18.71 0.86 40.61 5.54
1805 1871 2.634940 ACTCTAGTTGTCATGTGGTGCT 59.365 45.455 0.00 0.00 0.00 4.40
1867 1933 9.141400 GATTAGAACTGTAGTTAGTTTGTCTGG 57.859 37.037 0.00 0.00 40.78 3.86
1903 1969 5.817296 TGCATCGAAGTAGTAGATTTGCATT 59.183 36.000 0.00 0.00 0.00 3.56
1923 1991 8.254178 TGCATTCAACATTGATTTTCATAACC 57.746 30.769 0.00 0.00 37.00 2.85
1962 2030 3.801997 CCTCCGCCCTGCTGGATT 61.802 66.667 11.88 0.00 35.39 3.01
1963 2031 2.273449 CTCCGCCCTGCTGGATTT 59.727 61.111 11.88 0.00 35.39 2.17
2002 2070 8.348285 TGTTAATTTAGGATGGAACCTGAAAG 57.652 34.615 0.00 0.00 38.63 2.62
2014 2082 3.866883 ACCTGAAAGTTGTGTTTGGTG 57.133 42.857 0.00 0.00 0.00 4.17
2040 2108 4.566759 CAGAACTGTGTTTTCTGTCTCGAA 59.433 41.667 4.28 0.00 43.38 3.71
2055 2124 5.119815 GTCTCGAAAAAGACAATAGAGCG 57.880 43.478 0.00 0.00 44.20 5.03
2057 2126 5.798934 GTCTCGAAAAAGACAATAGAGCGTA 59.201 40.000 0.00 0.00 44.20 4.42
2108 2177 6.543430 TGAATGTTTTTGCCTTGCCTATAT 57.457 33.333 0.00 0.00 0.00 0.86
2133 2208 9.712305 ATCATCCTAGGAATATTAAACGACTTG 57.288 33.333 17.30 4.19 0.00 3.16
2190 2265 3.608316 ATCTCCTCTGAGTTGTCAAGC 57.392 47.619 3.66 0.00 39.75 4.01
2192 2267 2.968574 TCTCCTCTGAGTTGTCAAGCTT 59.031 45.455 3.66 0.00 39.75 3.74
2195 2270 2.064762 CTCTGAGTTGTCAAGCTTCCG 58.935 52.381 0.00 0.00 30.14 4.30
2200 2275 1.139058 AGTTGTCAAGCTTCCGTGTCT 59.861 47.619 0.00 0.00 0.00 3.41
2202 2277 3.006967 AGTTGTCAAGCTTCCGTGTCTAT 59.993 43.478 0.00 0.00 0.00 1.98
2207 2282 4.213482 GTCAAGCTTCCGTGTCTATTTTGT 59.787 41.667 0.00 0.00 0.00 2.83
2212 2287 4.148174 GCTTCCGTGTCTATTTTGTTTTGC 59.852 41.667 0.00 0.00 0.00 3.68
2220 2295 6.417930 GTGTCTATTTTGTTTTGCCAAGTCTC 59.582 38.462 0.00 0.00 0.00 3.36
2231 2306 1.550065 CCAAGTCTCGATGTAGCACG 58.450 55.000 0.00 0.00 0.00 5.34
2232 2307 1.132453 CCAAGTCTCGATGTAGCACGA 59.868 52.381 0.00 0.00 37.03 4.35
2303 2387 7.556996 TGTTTGCTAGAAACCTAAAACTGGTTA 59.443 33.333 12.35 0.00 45.99 2.85
2306 2390 7.933396 TGCTAGAAACCTAAAACTGGTTAAAC 58.067 34.615 0.00 0.00 45.99 2.01
2331 2415 6.572519 TGTTGCCTTTTATATTGGCTTGATC 58.427 36.000 10.95 0.00 46.23 2.92
2348 2432 5.514204 GCTTGATCTTTTCATGATTGGAACG 59.486 40.000 0.00 0.00 33.34 3.95
2350 2434 5.009631 TGATCTTTTCATGATTGGAACGGT 58.990 37.500 0.00 0.00 0.00 4.83
2440 2527 8.960591 GGAAGAGAGGTTTTCATTGATTCATAA 58.039 33.333 0.00 0.00 0.00 1.90
2473 2560 9.950496 AGTTTACAGAGTCATCATCTACAAAAT 57.050 29.630 0.00 0.00 0.00 1.82
2538 2625 5.010933 ACAGTGCTCACTCTAGCTAACTTA 58.989 41.667 0.00 0.00 43.19 2.24
2539 2626 5.477291 ACAGTGCTCACTCTAGCTAACTTAA 59.523 40.000 0.00 0.00 43.19 1.85
2540 2627 6.015350 ACAGTGCTCACTCTAGCTAACTTAAA 60.015 38.462 0.00 0.00 43.19 1.52
2544 2992 6.434652 TGCTCACTCTAGCTAACTTAAACTCT 59.565 38.462 0.00 0.00 43.19 3.24
2547 2995 9.169592 CTCACTCTAGCTAACTTAAACTCTAGT 57.830 37.037 0.00 0.00 0.00 2.57
2548 2996 8.948145 TCACTCTAGCTAACTTAAACTCTAGTG 58.052 37.037 0.00 0.00 0.00 2.74
2553 3001 6.391537 AGCTAACTTAAACTCTAGTGCTCAC 58.608 40.000 0.00 0.00 0.00 3.51
2555 3003 6.528774 GCTAACTTAAACTCTAGTGCTCACTC 59.471 42.308 5.72 0.00 42.54 3.51
2559 3007 4.712122 AAACTCTAGTGCTCACTCTAGC 57.288 45.455 5.72 0.00 42.54 3.42
2560 3008 3.644966 ACTCTAGTGCTCACTCTAGCT 57.355 47.619 5.72 0.00 43.19 3.32
2582 3184 7.338710 AGCTAACTTATCCTTGCTTACATTCA 58.661 34.615 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.638239 GAGTTGCACTTAATTATTTCCAAATGA 57.362 29.630 0.00 0.00 0.00 2.57
10 11 9.421806 TGAGTTGCACTTAATTATTTCCAAATG 57.578 29.630 0.00 0.00 0.00 2.32
11 12 9.995003 TTGAGTTGCACTTAATTATTTCCAAAT 57.005 25.926 0.00 0.00 0.00 2.32
12 13 9.995003 ATTGAGTTGCACTTAATTATTTCCAAA 57.005 25.926 0.00 0.00 31.38 3.28
13 14 9.421806 CATTGAGTTGCACTTAATTATTTCCAA 57.578 29.630 0.00 0.00 32.90 3.53
14 15 7.545265 GCATTGAGTTGCACTTAATTATTTCCA 59.455 33.333 0.00 0.00 42.31 3.53
15 16 7.761249 AGCATTGAGTTGCACTTAATTATTTCC 59.239 33.333 0.00 0.00 45.23 3.13
16 17 8.693542 AGCATTGAGTTGCACTTAATTATTTC 57.306 30.769 0.00 0.00 45.23 2.17
36 37 1.003464 GGCAATTTGGGTCCAAGCATT 59.997 47.619 12.42 4.85 37.24 3.56
37 38 0.614812 GGCAATTTGGGTCCAAGCAT 59.385 50.000 12.42 0.00 37.24 3.79
38 39 1.814772 CGGCAATTTGGGTCCAAGCA 61.815 55.000 12.42 0.00 37.24 3.91
39 40 1.079888 CGGCAATTTGGGTCCAAGC 60.080 57.895 2.48 3.60 37.24 4.01
40 41 1.185315 ATCGGCAATTTGGGTCCAAG 58.815 50.000 2.48 0.00 37.24 3.61
41 42 1.274728 CAATCGGCAATTTGGGTCCAA 59.725 47.619 0.00 0.00 0.00 3.53
42 43 0.894141 CAATCGGCAATTTGGGTCCA 59.106 50.000 0.00 0.00 0.00 4.02
43 44 0.460109 GCAATCGGCAATTTGGGTCC 60.460 55.000 0.00 0.00 43.97 4.46
44 45 3.049227 GCAATCGGCAATTTGGGTC 57.951 52.632 0.00 0.00 43.97 4.46
54 55 4.925068 AGATTTAGAATTGTGCAATCGGC 58.075 39.130 0.00 0.00 45.13 5.54
55 56 7.816945 AAAAGATTTAGAATTGTGCAATCGG 57.183 32.000 0.00 0.00 0.00 4.18
79 80 4.495459 AAAGATTACCCCCTCCCAAAAA 57.505 40.909 0.00 0.00 0.00 1.94
80 81 4.495459 AAAAGATTACCCCCTCCCAAAA 57.505 40.909 0.00 0.00 0.00 2.44
81 82 4.495459 AAAAAGATTACCCCCTCCCAAA 57.505 40.909 0.00 0.00 0.00 3.28
101 102 2.287251 CCCACCCCCACCCAAAAA 59.713 61.111 0.00 0.00 0.00 1.94
102 103 3.851184 CCCCACCCCCACCCAAAA 61.851 66.667 0.00 0.00 0.00 2.44
124 125 8.960591 CAAGTATATTATTGATCAATGACCCCC 58.039 37.037 27.59 13.10 32.50 5.40
125 126 9.520515 ACAAGTATATTATTGATCAATGACCCC 57.479 33.333 27.59 12.66 32.50 4.95
145 146 9.607988 CATAGTTCCACCATATTGTAACAAGTA 57.392 33.333 0.00 0.00 0.00 2.24
146 147 7.067008 GCATAGTTCCACCATATTGTAACAAGT 59.933 37.037 0.00 0.00 0.00 3.16
147 148 7.417612 GCATAGTTCCACCATATTGTAACAAG 58.582 38.462 0.00 0.00 0.00 3.16
148 149 6.037720 CGCATAGTTCCACCATATTGTAACAA 59.962 38.462 0.00 0.00 0.00 2.83
149 150 5.525745 CGCATAGTTCCACCATATTGTAACA 59.474 40.000 0.00 0.00 0.00 2.41
150 151 5.526111 ACGCATAGTTCCACCATATTGTAAC 59.474 40.000 0.00 0.00 0.00 2.50
151 152 5.525745 CACGCATAGTTCCACCATATTGTAA 59.474 40.000 0.00 0.00 0.00 2.41
152 153 5.053811 CACGCATAGTTCCACCATATTGTA 58.946 41.667 0.00 0.00 0.00 2.41
153 154 3.876914 CACGCATAGTTCCACCATATTGT 59.123 43.478 0.00 0.00 0.00 2.71
154 155 3.303990 GCACGCATAGTTCCACCATATTG 60.304 47.826 0.00 0.00 0.00 1.90
155 156 2.878406 GCACGCATAGTTCCACCATATT 59.122 45.455 0.00 0.00 0.00 1.28
156 157 2.158827 TGCACGCATAGTTCCACCATAT 60.159 45.455 0.00 0.00 0.00 1.78
157 158 1.208293 TGCACGCATAGTTCCACCATA 59.792 47.619 0.00 0.00 0.00 2.74
158 159 0.035534 TGCACGCATAGTTCCACCAT 60.036 50.000 0.00 0.00 0.00 3.55
159 160 0.250510 TTGCACGCATAGTTCCACCA 60.251 50.000 0.00 0.00 0.00 4.17
160 161 1.064060 GATTGCACGCATAGTTCCACC 59.936 52.381 0.00 0.00 0.00 4.61
161 162 2.009774 AGATTGCACGCATAGTTCCAC 58.990 47.619 0.00 0.00 0.00 4.02
162 163 2.401583 AGATTGCACGCATAGTTCCA 57.598 45.000 0.00 0.00 0.00 3.53
163 164 2.939103 AGAAGATTGCACGCATAGTTCC 59.061 45.455 0.00 0.00 0.00 3.62
164 165 3.618594 TGAGAAGATTGCACGCATAGTTC 59.381 43.478 0.00 0.00 0.00 3.01
165 166 3.599343 TGAGAAGATTGCACGCATAGTT 58.401 40.909 0.00 0.00 0.00 2.24
166 167 3.193263 CTGAGAAGATTGCACGCATAGT 58.807 45.455 0.00 0.00 0.00 2.12
167 168 3.001026 CACTGAGAAGATTGCACGCATAG 59.999 47.826 0.00 0.00 0.00 2.23
168 169 2.931969 CACTGAGAAGATTGCACGCATA 59.068 45.455 0.00 0.00 0.00 3.14
169 170 1.736126 CACTGAGAAGATTGCACGCAT 59.264 47.619 0.00 0.00 0.00 4.73
170 171 1.150827 CACTGAGAAGATTGCACGCA 58.849 50.000 0.00 0.00 0.00 5.24
171 172 0.445436 CCACTGAGAAGATTGCACGC 59.555 55.000 0.00 0.00 0.00 5.34
172 173 1.998315 CTCCACTGAGAAGATTGCACG 59.002 52.381 0.00 0.00 41.42 5.34
173 174 2.740981 CACTCCACTGAGAAGATTGCAC 59.259 50.000 0.00 0.00 41.42 4.57
174 175 2.873245 GCACTCCACTGAGAAGATTGCA 60.873 50.000 11.57 0.00 41.42 4.08
175 176 1.736681 GCACTCCACTGAGAAGATTGC 59.263 52.381 0.00 3.96 41.42 3.56
176 177 2.027377 AGGCACTCCACTGAGAAGATTG 60.027 50.000 0.00 0.00 41.42 2.67
177 178 2.264455 AGGCACTCCACTGAGAAGATT 58.736 47.619 0.00 0.00 41.42 2.40
178 179 1.949799 AGGCACTCCACTGAGAAGAT 58.050 50.000 0.00 0.00 41.42 2.40
179 180 3.464878 AGGCACTCCACTGAGAAGA 57.535 52.632 0.00 0.00 41.42 2.87
192 193 1.599542 GTTAAGCGATGGATGAGGCAC 59.400 52.381 0.00 0.00 0.00 5.01
193 194 1.806247 CGTTAAGCGATGGATGAGGCA 60.806 52.381 0.00 0.00 44.77 4.75
194 195 0.861837 CGTTAAGCGATGGATGAGGC 59.138 55.000 0.00 0.00 44.77 4.70
195 196 0.861837 GCGTTAAGCGATGGATGAGG 59.138 55.000 0.00 0.00 44.77 3.86
206 207 2.701606 GCTAGCCACGCGTTAAGC 59.298 61.111 10.22 13.79 43.95 3.09
207 208 2.995482 CGCTAGCCACGCGTTAAG 59.005 61.111 10.22 5.73 45.13 1.85
218 219 2.610727 CCTAGAGGTAAATGGCGCTAGC 60.611 54.545 7.64 4.06 44.18 3.42
219 220 3.305398 CCTAGAGGTAAATGGCGCTAG 57.695 52.381 7.64 0.00 0.00 3.42
231 232 7.614974 AGAGTTAGTTAAAATCGACCTAGAGGT 59.385 37.037 0.00 0.00 39.42 3.85
232 233 7.998580 AGAGTTAGTTAAAATCGACCTAGAGG 58.001 38.462 0.00 0.00 37.26 3.69
257 258 9.923143 CGACTAATGTATGGTGAAAAGGATATA 57.077 33.333 0.00 0.00 0.00 0.86
258 259 8.429641 ACGACTAATGTATGGTGAAAAGGATAT 58.570 33.333 0.00 0.00 0.00 1.63
259 260 7.788026 ACGACTAATGTATGGTGAAAAGGATA 58.212 34.615 0.00 0.00 0.00 2.59
260 261 6.650120 ACGACTAATGTATGGTGAAAAGGAT 58.350 36.000 0.00 0.00 0.00 3.24
261 262 6.045072 ACGACTAATGTATGGTGAAAAGGA 57.955 37.500 0.00 0.00 0.00 3.36
262 263 6.737254 AACGACTAATGTATGGTGAAAAGG 57.263 37.500 0.00 0.00 0.00 3.11
263 264 7.802738 TCAAACGACTAATGTATGGTGAAAAG 58.197 34.615 0.00 0.00 0.00 2.27
264 265 7.731882 TCAAACGACTAATGTATGGTGAAAA 57.268 32.000 0.00 0.00 0.00 2.29
265 266 7.822334 AGATCAAACGACTAATGTATGGTGAAA 59.178 33.333 0.00 0.00 0.00 2.69
266 267 7.327975 AGATCAAACGACTAATGTATGGTGAA 58.672 34.615 0.00 0.00 0.00 3.18
267 268 6.873997 AGATCAAACGACTAATGTATGGTGA 58.126 36.000 0.00 0.00 0.00 4.02
268 269 6.756542 TGAGATCAAACGACTAATGTATGGTG 59.243 38.462 0.00 0.00 0.00 4.17
269 270 6.873997 TGAGATCAAACGACTAATGTATGGT 58.126 36.000 0.00 0.00 0.00 3.55
270 271 7.953158 ATGAGATCAAACGACTAATGTATGG 57.047 36.000 0.00 0.00 0.00 2.74
273 274 9.309516 GGTAAATGAGATCAAACGACTAATGTA 57.690 33.333 0.00 0.00 0.00 2.29
274 275 7.822334 TGGTAAATGAGATCAAACGACTAATGT 59.178 33.333 0.00 0.00 0.00 2.71
275 276 8.196802 TGGTAAATGAGATCAAACGACTAATG 57.803 34.615 0.00 0.00 0.00 1.90
276 277 8.786826 TTGGTAAATGAGATCAAACGACTAAT 57.213 30.769 0.00 0.00 0.00 1.73
277 278 7.876068 ACTTGGTAAATGAGATCAAACGACTAA 59.124 33.333 0.00 0.00 0.00 2.24
278 279 7.330946 CACTTGGTAAATGAGATCAAACGACTA 59.669 37.037 0.00 0.00 0.00 2.59
279 280 6.147821 CACTTGGTAAATGAGATCAAACGACT 59.852 38.462 0.00 0.00 0.00 4.18
280 281 6.307155 CACTTGGTAAATGAGATCAAACGAC 58.693 40.000 0.00 0.00 0.00 4.34
281 282 5.411361 CCACTTGGTAAATGAGATCAAACGA 59.589 40.000 0.00 0.00 0.00 3.85
282 283 5.391950 CCCACTTGGTAAATGAGATCAAACG 60.392 44.000 0.00 0.00 0.00 3.60
283 284 5.954335 CCCACTTGGTAAATGAGATCAAAC 58.046 41.667 0.00 0.00 0.00 2.93
298 299 5.097742 TGTCAGATAATACACCCACTTGG 57.902 43.478 0.00 0.00 41.37 3.61
299 300 7.630242 ATTTGTCAGATAATACACCCACTTG 57.370 36.000 0.00 0.00 0.00 3.16
300 301 9.747898 TTTATTTGTCAGATAATACACCCACTT 57.252 29.630 0.00 0.00 0.00 3.16
301 302 9.396022 CTTTATTTGTCAGATAATACACCCACT 57.604 33.333 0.00 0.00 0.00 4.00
302 303 9.174166 ACTTTATTTGTCAGATAATACACCCAC 57.826 33.333 0.00 0.00 0.00 4.61
303 304 9.747898 AACTTTATTTGTCAGATAATACACCCA 57.252 29.630 0.00 0.00 0.00 4.51
346 347 6.070824 GGACCCCTTGTGATACATCAATTTTT 60.071 38.462 0.00 0.00 38.75 1.94
347 348 5.422012 GGACCCCTTGTGATACATCAATTTT 59.578 40.000 0.00 0.00 38.75 1.82
348 349 4.956075 GGACCCCTTGTGATACATCAATTT 59.044 41.667 0.00 0.00 38.75 1.82
349 350 4.536765 GGACCCCTTGTGATACATCAATT 58.463 43.478 0.00 0.00 38.75 2.32
350 351 3.433598 CGGACCCCTTGTGATACATCAAT 60.434 47.826 0.00 0.00 38.75 2.57
351 352 2.093181 CGGACCCCTTGTGATACATCAA 60.093 50.000 0.00 0.00 38.75 2.57
352 353 1.484653 CGGACCCCTTGTGATACATCA 59.515 52.381 0.00 0.00 0.00 3.07
353 354 1.760613 TCGGACCCCTTGTGATACATC 59.239 52.381 0.00 0.00 0.00 3.06
354 355 1.485066 GTCGGACCCCTTGTGATACAT 59.515 52.381 0.00 0.00 0.00 2.29
355 356 0.899720 GTCGGACCCCTTGTGATACA 59.100 55.000 0.00 0.00 0.00 2.29
356 357 0.177373 GGTCGGACCCCTTGTGATAC 59.823 60.000 16.55 0.00 30.04 2.24
357 358 0.252330 TGGTCGGACCCCTTGTGATA 60.252 55.000 23.81 0.00 37.50 2.15
358 359 0.914417 ATGGTCGGACCCCTTGTGAT 60.914 55.000 23.81 6.41 37.50 3.06
359 360 1.131303 AATGGTCGGACCCCTTGTGA 61.131 55.000 23.81 4.12 37.50 3.58
360 361 0.251165 AAATGGTCGGACCCCTTGTG 60.251 55.000 23.81 0.00 37.50 3.33
361 362 0.037734 GAAATGGTCGGACCCCTTGT 59.962 55.000 23.81 4.57 37.50 3.16
362 363 1.024579 CGAAATGGTCGGACCCCTTG 61.025 60.000 23.81 8.61 46.45 3.61
363 364 1.298667 CGAAATGGTCGGACCCCTT 59.701 57.895 23.81 16.28 46.45 3.95
364 365 2.987125 CGAAATGGTCGGACCCCT 59.013 61.111 23.81 9.01 46.45 4.79
371 372 8.318007 TTCAATTAGTGATGGCGAAATGGTCG 62.318 42.308 0.00 0.00 43.97 4.79
372 373 4.335315 TCAATTAGTGATGGCGAAATGGTC 59.665 41.667 0.00 0.00 0.00 4.02
373 374 4.269183 TCAATTAGTGATGGCGAAATGGT 58.731 39.130 0.00 0.00 0.00 3.55
374 375 4.898829 TCAATTAGTGATGGCGAAATGG 57.101 40.909 0.00 0.00 0.00 3.16
375 376 5.036737 GGTTCAATTAGTGATGGCGAAATG 58.963 41.667 0.00 0.00 35.70 2.32
376 377 4.201910 CGGTTCAATTAGTGATGGCGAAAT 60.202 41.667 0.00 0.00 35.70 2.17
377 378 3.126171 CGGTTCAATTAGTGATGGCGAAA 59.874 43.478 0.00 0.00 35.70 3.46
378 379 2.675844 CGGTTCAATTAGTGATGGCGAA 59.324 45.455 0.00 0.00 35.70 4.70
379 380 2.276201 CGGTTCAATTAGTGATGGCGA 58.724 47.619 0.00 0.00 35.70 5.54
380 381 1.268032 GCGGTTCAATTAGTGATGGCG 60.268 52.381 0.00 0.00 35.70 5.69
381 382 2.017049 AGCGGTTCAATTAGTGATGGC 58.983 47.619 0.00 0.00 35.70 4.40
382 383 3.689161 TCAAGCGGTTCAATTAGTGATGG 59.311 43.478 0.00 0.00 35.70 3.51
383 384 4.728882 GCTCAAGCGGTTCAATTAGTGATG 60.729 45.833 0.00 0.00 35.70 3.07
384 385 3.375299 GCTCAAGCGGTTCAATTAGTGAT 59.625 43.478 0.00 0.00 35.70 3.06
385 386 2.742053 GCTCAAGCGGTTCAATTAGTGA 59.258 45.455 0.00 0.00 0.00 3.41
386 387 3.122937 GCTCAAGCGGTTCAATTAGTG 57.877 47.619 0.00 0.00 0.00 2.74
399 400 0.179179 GAAATGGACTGCGCTCAAGC 60.179 55.000 9.73 0.00 37.78 4.01
400 401 0.449388 GGAAATGGACTGCGCTCAAG 59.551 55.000 9.73 0.00 0.00 3.02
401 402 0.250684 TGGAAATGGACTGCGCTCAA 60.251 50.000 9.73 0.00 0.00 3.02
402 403 0.955428 GTGGAAATGGACTGCGCTCA 60.955 55.000 9.73 2.10 0.00 4.26
403 404 1.796796 GTGGAAATGGACTGCGCTC 59.203 57.895 9.73 0.00 0.00 5.03
404 405 2.034879 CGTGGAAATGGACTGCGCT 61.035 57.895 9.73 0.00 0.00 5.92
405 406 2.480555 CGTGGAAATGGACTGCGC 59.519 61.111 0.00 0.00 0.00 6.09
406 407 1.234615 AACCGTGGAAATGGACTGCG 61.235 55.000 0.00 0.00 0.00 5.18
407 408 1.737793 CTAACCGTGGAAATGGACTGC 59.262 52.381 0.00 0.00 0.00 4.40
408 409 1.737793 GCTAACCGTGGAAATGGACTG 59.262 52.381 0.00 0.00 0.00 3.51
409 410 1.628846 AGCTAACCGTGGAAATGGACT 59.371 47.619 0.00 0.00 0.00 3.85
410 411 2.109425 AGCTAACCGTGGAAATGGAC 57.891 50.000 0.00 0.00 0.00 4.02
411 412 2.039216 TGAAGCTAACCGTGGAAATGGA 59.961 45.455 0.00 0.00 0.00 3.41
412 413 2.161609 GTGAAGCTAACCGTGGAAATGG 59.838 50.000 0.00 0.00 0.00 3.16
413 414 2.161609 GGTGAAGCTAACCGTGGAAATG 59.838 50.000 2.90 0.00 0.00 2.32
414 415 2.433436 GGTGAAGCTAACCGTGGAAAT 58.567 47.619 2.90 0.00 0.00 2.17
415 416 1.543871 GGGTGAAGCTAACCGTGGAAA 60.544 52.381 11.37 0.00 38.70 3.13
416 417 0.035739 GGGTGAAGCTAACCGTGGAA 59.964 55.000 11.37 0.00 38.70 3.53
417 418 1.675219 GGGTGAAGCTAACCGTGGA 59.325 57.895 11.37 0.00 38.70 4.02
418 419 1.376812 GGGGTGAAGCTAACCGTGG 60.377 63.158 11.37 0.00 38.70 4.94
419 420 1.376812 GGGGGTGAAGCTAACCGTG 60.377 63.158 11.37 0.00 38.70 4.94
420 421 1.131928 AAGGGGGTGAAGCTAACCGT 61.132 55.000 11.37 0.00 38.70 4.83
421 422 0.392595 GAAGGGGGTGAAGCTAACCG 60.393 60.000 11.37 0.00 38.70 4.44
422 423 0.992695 AGAAGGGGGTGAAGCTAACC 59.007 55.000 9.56 9.56 36.94 2.85
423 424 2.838813 ACTAGAAGGGGGTGAAGCTAAC 59.161 50.000 0.00 0.00 0.00 2.34
424 425 3.200958 ACTAGAAGGGGGTGAAGCTAA 57.799 47.619 0.00 0.00 0.00 3.09
425 426 2.942604 ACTAGAAGGGGGTGAAGCTA 57.057 50.000 0.00 0.00 0.00 3.32
426 427 2.942604 TACTAGAAGGGGGTGAAGCT 57.057 50.000 0.00 0.00 0.00 3.74
427 428 4.202336 GGTTATACTAGAAGGGGGTGAAGC 60.202 50.000 0.00 0.00 0.00 3.86
428 429 4.347292 GGGTTATACTAGAAGGGGGTGAAG 59.653 50.000 0.00 0.00 0.00 3.02
429 430 4.301205 GGGTTATACTAGAAGGGGGTGAA 58.699 47.826 0.00 0.00 0.00 3.18
430 431 3.692187 CGGGTTATACTAGAAGGGGGTGA 60.692 52.174 0.00 0.00 0.00 4.02
431 432 2.631545 CGGGTTATACTAGAAGGGGGTG 59.368 54.545 0.00 0.00 0.00 4.61
432 433 2.519691 TCGGGTTATACTAGAAGGGGGT 59.480 50.000 0.00 0.00 0.00 4.95
433 434 3.163467 CTCGGGTTATACTAGAAGGGGG 58.837 54.545 0.00 0.00 0.00 5.40
434 435 4.109877 TCTCGGGTTATACTAGAAGGGG 57.890 50.000 0.00 0.00 0.00 4.79
435 436 5.106237 CGATTCTCGGGTTATACTAGAAGGG 60.106 48.000 0.00 0.00 36.00 3.95
436 437 5.619533 GCGATTCTCGGGTTATACTAGAAGG 60.620 48.000 0.00 0.00 40.84 3.46
437 438 5.048921 TGCGATTCTCGGGTTATACTAGAAG 60.049 44.000 0.00 0.00 40.84 2.85
438 439 4.823442 TGCGATTCTCGGGTTATACTAGAA 59.177 41.667 0.00 0.00 40.84 2.10
439 440 4.392047 TGCGATTCTCGGGTTATACTAGA 58.608 43.478 0.00 0.00 40.84 2.43
440 441 4.761235 TGCGATTCTCGGGTTATACTAG 57.239 45.455 0.00 0.00 40.84 2.57
441 442 4.142752 CGATGCGATTCTCGGGTTATACTA 60.143 45.833 0.00 0.00 40.84 1.82
442 443 3.366070 CGATGCGATTCTCGGGTTATACT 60.366 47.826 0.00 0.00 40.84 2.12
443 444 2.915463 CGATGCGATTCTCGGGTTATAC 59.085 50.000 0.00 0.00 40.84 1.47
444 445 3.211803 CGATGCGATTCTCGGGTTATA 57.788 47.619 0.00 0.00 40.84 0.98
445 446 2.065993 CGATGCGATTCTCGGGTTAT 57.934 50.000 0.00 0.00 40.84 1.89
446 447 3.562639 CGATGCGATTCTCGGGTTA 57.437 52.632 0.00 0.00 40.84 2.85
447 448 4.420143 CGATGCGATTCTCGGGTT 57.580 55.556 0.00 0.00 40.84 4.11
451 452 0.387367 CTACCCCGATGCGATTCTCG 60.387 60.000 0.00 0.00 43.89 4.04
452 453 0.959553 TCTACCCCGATGCGATTCTC 59.040 55.000 0.00 0.00 0.00 2.87
453 454 0.674534 GTCTACCCCGATGCGATTCT 59.325 55.000 0.00 0.00 0.00 2.40
454 455 0.387929 TGTCTACCCCGATGCGATTC 59.612 55.000 0.00 0.00 0.00 2.52
455 456 0.389391 CTGTCTACCCCGATGCGATT 59.611 55.000 0.00 0.00 0.00 3.34
456 457 0.467474 TCTGTCTACCCCGATGCGAT 60.467 55.000 0.00 0.00 0.00 4.58
457 458 0.467474 ATCTGTCTACCCCGATGCGA 60.467 55.000 0.00 0.00 0.00 5.10
458 459 0.039074 GATCTGTCTACCCCGATGCG 60.039 60.000 0.00 0.00 0.00 4.73
459 460 0.318762 GGATCTGTCTACCCCGATGC 59.681 60.000 0.00 0.00 0.00 3.91
460 461 1.704641 TGGATCTGTCTACCCCGATG 58.295 55.000 0.00 0.00 0.00 3.84
461 462 2.704190 ATGGATCTGTCTACCCCGAT 57.296 50.000 0.00 0.00 0.00 4.18
462 463 2.714793 TCTATGGATCTGTCTACCCCGA 59.285 50.000 0.00 0.00 0.00 5.14
463 464 3.156288 TCTATGGATCTGTCTACCCCG 57.844 52.381 0.00 0.00 0.00 5.73
464 465 5.148502 TCTTTCTATGGATCTGTCTACCCC 58.851 45.833 0.00 0.00 0.00 4.95
465 466 6.239458 CCTTCTTTCTATGGATCTGTCTACCC 60.239 46.154 0.00 0.00 0.00 3.69
466 467 6.239458 CCCTTCTTTCTATGGATCTGTCTACC 60.239 46.154 0.00 0.00 0.00 3.18
467 468 6.239458 CCCCTTCTTTCTATGGATCTGTCTAC 60.239 46.154 0.00 0.00 0.00 2.59
468 469 5.841237 CCCCTTCTTTCTATGGATCTGTCTA 59.159 44.000 0.00 0.00 0.00 2.59
469 470 4.657969 CCCCTTCTTTCTATGGATCTGTCT 59.342 45.833 0.00 0.00 0.00 3.41
470 471 4.745172 GCCCCTTCTTTCTATGGATCTGTC 60.745 50.000 0.00 0.00 0.00 3.51
471 472 3.137360 GCCCCTTCTTTCTATGGATCTGT 59.863 47.826 0.00 0.00 0.00 3.41
472 473 3.749226 GCCCCTTCTTTCTATGGATCTG 58.251 50.000 0.00 0.00 0.00 2.90
473 474 2.370189 CGCCCCTTCTTTCTATGGATCT 59.630 50.000 0.00 0.00 0.00 2.75
474 475 2.551071 CCGCCCCTTCTTTCTATGGATC 60.551 54.545 0.00 0.00 0.00 3.36
475 476 1.421646 CCGCCCCTTCTTTCTATGGAT 59.578 52.381 0.00 0.00 0.00 3.41
476 477 0.837272 CCGCCCCTTCTTTCTATGGA 59.163 55.000 0.00 0.00 0.00 3.41
477 478 0.837272 TCCGCCCCTTCTTTCTATGG 59.163 55.000 0.00 0.00 0.00 2.74
478 479 1.202698 CCTCCGCCCCTTCTTTCTATG 60.203 57.143 0.00 0.00 0.00 2.23
479 480 1.132500 CCTCCGCCCCTTCTTTCTAT 58.868 55.000 0.00 0.00 0.00 1.98
480 481 1.623542 GCCTCCGCCCCTTCTTTCTA 61.624 60.000 0.00 0.00 0.00 2.10
481 482 2.972819 GCCTCCGCCCCTTCTTTCT 61.973 63.158 0.00 0.00 0.00 2.52
482 483 2.438614 GCCTCCGCCCCTTCTTTC 60.439 66.667 0.00 0.00 0.00 2.62
483 484 4.410400 CGCCTCCGCCCCTTCTTT 62.410 66.667 0.00 0.00 0.00 2.52
494 495 1.627297 ATTTCCTCTGGTCCGCCTCC 61.627 60.000 0.00 0.00 35.27 4.30
495 496 0.179070 GATTTCCTCTGGTCCGCCTC 60.179 60.000 0.00 0.00 35.27 4.70
496 497 0.909610 TGATTTCCTCTGGTCCGCCT 60.910 55.000 0.00 0.00 35.27 5.52
497 498 0.035439 TTGATTTCCTCTGGTCCGCC 60.035 55.000 0.00 0.00 0.00 6.13
498 499 1.066143 TCTTGATTTCCTCTGGTCCGC 60.066 52.381 0.00 0.00 0.00 5.54
499 500 3.055819 TCTTCTTGATTTCCTCTGGTCCG 60.056 47.826 0.00 0.00 0.00 4.79
500 501 4.559862 TCTTCTTGATTTCCTCTGGTCC 57.440 45.455 0.00 0.00 0.00 4.46
501 502 5.555966 ACTTCTTCTTGATTTCCTCTGGTC 58.444 41.667 0.00 0.00 0.00 4.02
502 503 5.555966 GACTTCTTCTTGATTTCCTCTGGT 58.444 41.667 0.00 0.00 0.00 4.00
503 504 4.629200 CGACTTCTTCTTGATTTCCTCTGG 59.371 45.833 0.00 0.00 0.00 3.86
504 505 5.473931 TCGACTTCTTCTTGATTTCCTCTG 58.526 41.667 0.00 0.00 0.00 3.35
505 506 5.337169 CCTCGACTTCTTCTTGATTTCCTCT 60.337 44.000 0.00 0.00 0.00 3.69
506 507 4.867608 CCTCGACTTCTTCTTGATTTCCTC 59.132 45.833 0.00 0.00 0.00 3.71
507 508 4.528596 TCCTCGACTTCTTCTTGATTTCCT 59.471 41.667 0.00 0.00 0.00 3.36
508 509 4.822026 TCCTCGACTTCTTCTTGATTTCC 58.178 43.478 0.00 0.00 0.00 3.13
509 510 6.159988 TCTTCCTCGACTTCTTCTTGATTTC 58.840 40.000 0.00 0.00 0.00 2.17
510 511 6.102897 TCTTCCTCGACTTCTTCTTGATTT 57.897 37.500 0.00 0.00 0.00 2.17
511 512 5.730296 TCTTCCTCGACTTCTTCTTGATT 57.270 39.130 0.00 0.00 0.00 2.57
512 513 5.449862 CGATCTTCCTCGACTTCTTCTTGAT 60.450 44.000 0.00 0.00 41.12 2.57
513 514 4.142578 CGATCTTCCTCGACTTCTTCTTGA 60.143 45.833 0.00 0.00 41.12 3.02
514 515 4.101942 CGATCTTCCTCGACTTCTTCTTG 58.898 47.826 0.00 0.00 41.12 3.02
515 516 3.759618 ACGATCTTCCTCGACTTCTTCTT 59.240 43.478 0.00 0.00 41.12 2.52
516 517 3.349022 ACGATCTTCCTCGACTTCTTCT 58.651 45.455 0.00 0.00 41.12 2.85
517 518 3.687200 GACGATCTTCCTCGACTTCTTC 58.313 50.000 0.00 0.00 41.12 2.87
518 519 2.096174 CGACGATCTTCCTCGACTTCTT 59.904 50.000 0.00 0.00 41.12 2.52
519 520 1.666700 CGACGATCTTCCTCGACTTCT 59.333 52.381 0.00 0.00 41.12 2.85
520 521 1.268133 CCGACGATCTTCCTCGACTTC 60.268 57.143 0.00 0.00 41.12 3.01
521 522 0.733729 CCGACGATCTTCCTCGACTT 59.266 55.000 0.00 0.00 41.12 3.01
522 523 0.107800 TCCGACGATCTTCCTCGACT 60.108 55.000 0.00 0.00 41.12 4.18
523 524 0.305313 CTCCGACGATCTTCCTCGAC 59.695 60.000 0.00 0.00 41.12 4.20
524 525 1.437772 GCTCCGACGATCTTCCTCGA 61.438 60.000 0.00 0.00 41.12 4.04
525 526 1.009449 GCTCCGACGATCTTCCTCG 60.009 63.158 0.00 0.00 44.14 4.63
526 527 1.009449 CGCTCCGACGATCTTCCTC 60.009 63.158 0.00 0.00 34.06 3.71
527 528 2.482333 CCGCTCCGACGATCTTCCT 61.482 63.158 0.00 0.00 34.06 3.36
528 529 2.026301 CCGCTCCGACGATCTTCC 59.974 66.667 0.00 0.00 34.06 3.46
529 530 2.655685 GCCGCTCCGACGATCTTC 60.656 66.667 0.00 0.00 34.06 2.87
530 531 4.208686 GGCCGCTCCGACGATCTT 62.209 66.667 0.00 0.00 34.06 2.40
542 543 2.597510 AGAAAAGTGGTGGGCCGC 60.598 61.111 9.05 9.05 45.35 6.53
543 544 0.609131 ATCAGAAAAGTGGTGGGCCG 60.609 55.000 0.00 0.00 37.67 6.13
544 545 2.290960 ACTATCAGAAAAGTGGTGGGCC 60.291 50.000 0.00 0.00 0.00 5.80
545 546 3.073274 ACTATCAGAAAAGTGGTGGGC 57.927 47.619 0.00 0.00 0.00 5.36
546 547 6.405278 AAAAACTATCAGAAAAGTGGTGGG 57.595 37.500 0.00 0.00 0.00 4.61
585 586 9.476202 GTTTATCATTGCAAGAAACTACCTTTT 57.524 29.630 4.94 0.00 0.00 2.27
586 587 8.088365 GGTTTATCATTGCAAGAAACTACCTTT 58.912 33.333 19.73 0.00 32.00 3.11
587 588 7.574967 CGGTTTATCATTGCAAGAAACTACCTT 60.575 37.037 19.73 0.00 32.00 3.50
588 589 6.128007 CGGTTTATCATTGCAAGAAACTACCT 60.128 38.462 19.73 0.00 32.00 3.08
589 590 6.027749 CGGTTTATCATTGCAAGAAACTACC 58.972 40.000 19.73 15.00 32.00 3.18
590 591 6.608610 ACGGTTTATCATTGCAAGAAACTAC 58.391 36.000 19.73 9.57 32.00 2.73
591 592 6.811253 ACGGTTTATCATTGCAAGAAACTA 57.189 33.333 19.73 2.52 32.00 2.24
592 593 5.705609 ACGGTTTATCATTGCAAGAAACT 57.294 34.783 19.73 6.85 32.00 2.66
593 594 7.540745 ACATTACGGTTTATCATTGCAAGAAAC 59.459 33.333 4.94 11.91 0.00 2.78
594 595 7.540400 CACATTACGGTTTATCATTGCAAGAAA 59.460 33.333 4.94 0.00 0.00 2.52
595 596 7.026562 CACATTACGGTTTATCATTGCAAGAA 58.973 34.615 4.94 0.00 0.00 2.52
596 597 6.404184 CCACATTACGGTTTATCATTGCAAGA 60.404 38.462 4.94 3.10 0.00 3.02
597 598 5.743398 CCACATTACGGTTTATCATTGCAAG 59.257 40.000 4.94 0.00 0.00 4.01
598 599 5.184096 ACCACATTACGGTTTATCATTGCAA 59.816 36.000 0.00 0.00 30.53 4.08
599 600 4.702612 ACCACATTACGGTTTATCATTGCA 59.297 37.500 0.00 0.00 30.53 4.08
600 601 5.243426 ACCACATTACGGTTTATCATTGC 57.757 39.130 0.00 0.00 30.53 3.56
601 602 7.548196 ACTACCACATTACGGTTTATCATTG 57.452 36.000 0.00 0.00 37.99 2.82
602 603 8.570068 AAACTACCACATTACGGTTTATCATT 57.430 30.769 0.00 0.00 37.99 2.57
603 604 8.570068 AAAACTACCACATTACGGTTTATCAT 57.430 30.769 0.00 0.00 37.99 2.45
604 605 7.982761 AAAACTACCACATTACGGTTTATCA 57.017 32.000 0.00 0.00 37.99 2.15
626 627 5.298276 AGTTCAACGGAGTGAATAGCAAAAA 59.702 36.000 2.39 0.00 45.00 1.94
627 628 4.819630 AGTTCAACGGAGTGAATAGCAAAA 59.180 37.500 2.39 0.00 45.00 2.44
628 629 4.385825 AGTTCAACGGAGTGAATAGCAAA 58.614 39.130 2.39 0.00 45.00 3.68
629 630 4.002906 AGTTCAACGGAGTGAATAGCAA 57.997 40.909 2.39 0.00 45.00 3.91
630 631 3.678056 AGTTCAACGGAGTGAATAGCA 57.322 42.857 2.39 0.00 45.00 3.49
631 632 5.109903 ACATAGTTCAACGGAGTGAATAGC 58.890 41.667 2.39 0.00 45.00 2.97
632 633 6.455646 GCAACATAGTTCAACGGAGTGAATAG 60.456 42.308 2.39 0.00 45.00 1.73
633 634 5.350365 GCAACATAGTTCAACGGAGTGAATA 59.650 40.000 2.39 0.00 45.00 1.75
634 635 4.154195 GCAACATAGTTCAACGGAGTGAAT 59.846 41.667 2.39 0.00 45.00 2.57
635 636 3.496884 GCAACATAGTTCAACGGAGTGAA 59.503 43.478 0.00 0.00 45.00 3.18
636 637 3.064207 GCAACATAGTTCAACGGAGTGA 58.936 45.455 0.00 0.00 45.00 3.41
637 638 2.159841 CGCAACATAGTTCAACGGAGTG 60.160 50.000 0.00 0.00 45.00 3.51
639 640 1.201921 GCGCAACATAGTTCAACGGAG 60.202 52.381 0.30 0.00 0.00 4.63
640 641 0.793861 GCGCAACATAGTTCAACGGA 59.206 50.000 0.30 0.00 0.00 4.69
641 642 0.518355 CGCGCAACATAGTTCAACGG 60.518 55.000 8.75 0.00 0.00 4.44
642 643 0.518355 CCGCGCAACATAGTTCAACG 60.518 55.000 8.75 0.00 0.00 4.10
643 644 0.793861 TCCGCGCAACATAGTTCAAC 59.206 50.000 8.75 0.00 0.00 3.18
644 645 1.732941 ATCCGCGCAACATAGTTCAA 58.267 45.000 8.75 0.00 0.00 2.69
645 646 1.396648 CAATCCGCGCAACATAGTTCA 59.603 47.619 8.75 0.00 0.00 3.18
646 647 1.396996 ACAATCCGCGCAACATAGTTC 59.603 47.619 8.75 0.00 0.00 3.01
647 648 1.448985 ACAATCCGCGCAACATAGTT 58.551 45.000 8.75 0.00 0.00 2.24
648 649 2.303163 TACAATCCGCGCAACATAGT 57.697 45.000 8.75 0.47 0.00 2.12
649 650 3.494626 AGATTACAATCCGCGCAACATAG 59.505 43.478 8.75 0.00 36.04 2.23
650 651 3.462982 AGATTACAATCCGCGCAACATA 58.537 40.909 8.75 0.00 36.04 2.29
651 652 2.288666 AGATTACAATCCGCGCAACAT 58.711 42.857 8.75 0.00 36.04 2.71
652 653 1.732941 AGATTACAATCCGCGCAACA 58.267 45.000 8.75 0.00 36.04 3.33
653 654 2.095213 TCAAGATTACAATCCGCGCAAC 59.905 45.455 8.75 0.00 36.04 4.17
654 655 2.351455 TCAAGATTACAATCCGCGCAA 58.649 42.857 8.75 0.00 36.04 4.85
655 656 2.017138 TCAAGATTACAATCCGCGCA 57.983 45.000 8.75 0.00 36.04 6.09
656 657 2.287915 ACATCAAGATTACAATCCGCGC 59.712 45.455 0.00 0.00 36.04 6.86
657 658 4.536364 AACATCAAGATTACAATCCGCG 57.464 40.909 0.00 0.00 36.04 6.46
658 659 7.016361 AGTAAACATCAAGATTACAATCCGC 57.984 36.000 0.00 0.00 37.79 5.54
659 660 7.337718 CGAGTAAACATCAAGATTACAATCCG 58.662 38.462 0.00 0.00 37.79 4.18
660 661 7.126398 GCGAGTAAACATCAAGATTACAATCC 58.874 38.462 0.00 0.00 37.79 3.01
661 662 7.684670 TGCGAGTAAACATCAAGATTACAATC 58.315 34.615 0.00 0.00 37.79 2.67
662 663 7.609760 TGCGAGTAAACATCAAGATTACAAT 57.390 32.000 0.00 0.00 37.79 2.71
663 664 7.428282 TTGCGAGTAAACATCAAGATTACAA 57.572 32.000 0.00 0.00 37.79 2.41
664 665 7.428282 TTTGCGAGTAAACATCAAGATTACA 57.572 32.000 0.00 0.00 37.79 2.41
665 666 8.722342 TTTTTGCGAGTAAACATCAAGATTAC 57.278 30.769 0.00 0.00 36.16 1.89
713 717 5.924356 TCCCTGCGATGAGAAATTTGTATA 58.076 37.500 0.00 0.00 0.00 1.47
723 727 4.635765 CACTTTATTTTCCCTGCGATGAGA 59.364 41.667 0.00 0.00 0.00 3.27
726 730 4.963276 TCACTTTATTTTCCCTGCGATG 57.037 40.909 0.00 0.00 0.00 3.84
729 733 4.497473 TGTTCACTTTATTTTCCCTGCG 57.503 40.909 0.00 0.00 0.00 5.18
730 734 5.596845 TGTTGTTCACTTTATTTTCCCTGC 58.403 37.500 0.00 0.00 0.00 4.85
731 735 8.143835 AGAATGTTGTTCACTTTATTTTCCCTG 58.856 33.333 0.00 0.00 0.00 4.45
732 736 8.143835 CAGAATGTTGTTCACTTTATTTTCCCT 58.856 33.333 0.00 0.00 0.00 4.20
733 737 8.141268 TCAGAATGTTGTTCACTTTATTTTCCC 58.859 33.333 0.00 0.00 37.40 3.97
734 738 9.528018 TTCAGAATGTTGTTCACTTTATTTTCC 57.472 29.630 0.00 0.00 37.40 3.13
739 743 8.131100 CACTGTTCAGAATGTTGTTCACTTTAT 58.869 33.333 6.83 0.00 37.40 1.40
740 744 7.471721 CACTGTTCAGAATGTTGTTCACTTTA 58.528 34.615 6.83 0.00 37.40 1.85
768 778 1.341156 AAGGATCCAAGGAGGCCTCG 61.341 60.000 26.36 12.75 37.29 4.63
801 818 3.818787 GGGCGACTTAGCGACGGA 61.819 66.667 0.00 0.00 41.12 4.69
806 823 2.202756 GTCAGGGGCGACTTAGCG 60.203 66.667 0.00 0.00 38.18 4.26
917 934 1.974236 CTGTGGATCTGTCTATCCCCC 59.026 57.143 0.00 0.00 44.23 5.40
918 935 2.964209 TCTGTGGATCTGTCTATCCCC 58.036 52.381 0.00 0.00 44.23 4.81
935 952 0.034670 CCTGCCCCCTTCTTCTTCTG 60.035 60.000 0.00 0.00 0.00 3.02
1339 1384 1.657822 GGGAAAGAGGAAGCGTGATC 58.342 55.000 0.00 0.00 0.00 2.92
1717 1783 4.731416 TCAATCCTCCAATCCCCTTGATAA 59.269 41.667 0.00 0.00 36.97 1.75
1718 1784 4.315115 TCAATCCTCCAATCCCCTTGATA 58.685 43.478 0.00 0.00 36.97 2.15
1719 1785 3.133665 TCAATCCTCCAATCCCCTTGAT 58.866 45.455 0.00 0.00 36.97 2.57
1753 1819 3.118629 TGCTGGCTCTTATTAGTCCACAG 60.119 47.826 0.00 0.00 0.00 3.66
1867 1933 0.804364 TCGATGCACACCAAATCAGC 59.196 50.000 0.00 0.00 0.00 4.26
1931 1999 1.067915 GCGGAGGCAATTGCTTTGTTA 60.068 47.619 28.42 0.00 41.70 2.41
1962 2030 7.556275 CCTAAATTAACAGCATCCACCTAAGAA 59.444 37.037 0.00 0.00 0.00 2.52
1963 2031 7.054124 CCTAAATTAACAGCATCCACCTAAGA 58.946 38.462 0.00 0.00 0.00 2.10
2002 2070 4.165779 CAGTTCTGTTCACCAAACACAAC 58.834 43.478 2.15 2.15 43.28 3.32
2022 2090 5.960105 GTCTTTTTCGAGACAGAAAACACAG 59.040 40.000 4.61 1.53 46.08 3.66
2040 2108 5.932303 TCTTGCTTACGCTCTATTGTCTTTT 59.068 36.000 0.00 0.00 36.97 2.27
2055 2124 2.426522 TGTGCACCTGATCTTGCTTAC 58.573 47.619 15.69 6.93 39.62 2.34
2057 2126 1.985473 TTGTGCACCTGATCTTGCTT 58.015 45.000 15.69 0.00 39.62 3.91
2108 2177 8.920174 TCAAGTCGTTTAATATTCCTAGGATGA 58.080 33.333 13.57 5.07 0.00 2.92
2127 2202 9.855021 AATTGGTCCTATTTTTATTTCAAGTCG 57.145 29.630 0.00 0.00 0.00 4.18
2190 2265 4.679654 GGCAAAACAAAATAGACACGGAAG 59.320 41.667 0.00 0.00 0.00 3.46
2192 2267 3.632604 TGGCAAAACAAAATAGACACGGA 59.367 39.130 0.00 0.00 0.00 4.69
2195 2270 6.273071 AGACTTGGCAAAACAAAATAGACAC 58.727 36.000 0.00 0.00 0.00 3.67
2200 2275 5.759506 TCGAGACTTGGCAAAACAAAATA 57.240 34.783 0.00 0.00 0.00 1.40
2202 2277 4.142271 ACATCGAGACTTGGCAAAACAAAA 60.142 37.500 0.00 0.00 0.00 2.44
2207 2282 2.742053 GCTACATCGAGACTTGGCAAAA 59.258 45.455 0.00 0.00 0.00 2.44
2212 2287 1.132453 TCGTGCTACATCGAGACTTGG 59.868 52.381 0.00 0.00 0.00 3.61
2231 2306 2.236395 ACACAATGGTAGGCCTGTAGTC 59.764 50.000 17.99 0.35 35.27 2.59
2232 2307 2.266279 ACACAATGGTAGGCCTGTAGT 58.734 47.619 17.99 2.19 35.27 2.73
2237 2312 4.896482 TGTTAAAAACACAATGGTAGGCCT 59.104 37.500 11.78 11.78 36.25 5.19
2238 2313 5.203060 TGTTAAAAACACAATGGTAGGCC 57.797 39.130 0.00 0.00 36.25 5.19
2331 2415 6.494893 TTCTACCGTTCCAATCATGAAAAG 57.505 37.500 0.00 0.00 0.00 2.27
2348 2432 4.572909 ACAACCCGTAAGTCAATTCTACC 58.427 43.478 0.00 0.00 0.00 3.18
2350 2434 5.467399 CACAACAACCCGTAAGTCAATTCTA 59.533 40.000 0.00 0.00 0.00 2.10
2440 2527 6.672266 TGATGACTCTGTAAACTCTCCTTT 57.328 37.500 0.00 0.00 0.00 3.11
2473 2560 2.608623 TGTCCAGACAGAGATTGGTCA 58.391 47.619 0.00 0.00 36.21 4.02
2538 2625 4.340617 AGCTAGAGTGAGCACTAGAGTTT 58.659 43.478 2.65 0.00 45.43 2.66
2539 2626 3.963129 AGCTAGAGTGAGCACTAGAGTT 58.037 45.455 2.65 0.00 45.43 3.01
2540 2627 3.644966 AGCTAGAGTGAGCACTAGAGT 57.355 47.619 2.65 0.00 45.43 3.24
2544 2992 6.487331 GGATAAGTTAGCTAGAGTGAGCACTA 59.513 42.308 2.65 0.00 45.43 2.74
2547 2995 5.450453 AGGATAAGTTAGCTAGAGTGAGCA 58.550 41.667 0.00 0.00 45.43 4.26
2548 2996 6.212955 CAAGGATAAGTTAGCTAGAGTGAGC 58.787 44.000 0.00 0.00 43.19 4.26
2553 3001 7.717568 TGTAAGCAAGGATAAGTTAGCTAGAG 58.282 38.462 0.00 0.00 0.00 2.43
2555 3003 8.894768 AATGTAAGCAAGGATAAGTTAGCTAG 57.105 34.615 0.00 0.00 0.00 3.42
2559 3007 8.946085 TGTTGAATGTAAGCAAGGATAAGTTAG 58.054 33.333 0.00 0.00 0.00 2.34
2560 3008 8.856153 TGTTGAATGTAAGCAAGGATAAGTTA 57.144 30.769 0.00 0.00 0.00 2.24
2582 3184 1.891150 CTGGCTGCTGATCCTTTTGTT 59.109 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.