Multiple sequence alignment - TraesCS4A01G011600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G011600 chr4A 100.000 5073 0 0 1 5073 6638708 6633636 0.000000e+00 9369.0
1 TraesCS4A01G011600 chr4A 96.429 56 2 0 2738 2793 68455922 68455867 5.410000e-15 93.5
2 TraesCS4A01G011600 chr4A 97.222 36 0 1 1297 1331 46057852 46057817 5.490000e-05 60.2
3 TraesCS4A01G011600 chr4B 91.193 1828 99 28 3263 5072 578226737 578228520 0.000000e+00 2427.0
4 TraesCS4A01G011600 chr4B 92.363 982 46 9 1439 2403 578224539 578225508 0.000000e+00 1371.0
5 TraesCS4A01G011600 chr4B 83.047 1339 97 61 3 1289 578223109 578224369 0.000000e+00 1096.0
6 TraesCS4A01G011600 chr4B 80.110 905 70 48 2423 3262 578225565 578226424 1.580000e-159 573.0
7 TraesCS4A01G011600 chr4B 96.429 56 2 0 2738 2793 22562401 22562456 5.410000e-15 93.5
8 TraesCS4A01G011600 chr4B 97.143 35 1 0 2082 2116 22562301 22562335 5.490000e-05 60.2
9 TraesCS4A01G011600 chr4D 93.044 1222 42 22 3647 4853 462744653 462743460 0.000000e+00 1746.0
10 TraesCS4A01G011600 chr4D 91.963 871 39 16 1439 2288 462747062 462746202 0.000000e+00 1192.0
11 TraesCS4A01G011600 chr4D 93.133 699 23 13 2920 3608 462745417 462744734 0.000000e+00 1002.0
12 TraesCS4A01G011600 chr4D 89.961 767 40 16 527 1289 462747965 462747232 0.000000e+00 955.0
13 TraesCS4A01G011600 chr4D 98.268 231 3 1 4844 5073 462743196 462742966 2.200000e-108 403.0
14 TraesCS4A01G011600 chr4D 79.054 592 60 37 2423 2963 462746017 462745439 1.050000e-91 348.0
15 TraesCS4A01G011600 chr4D 81.573 445 32 22 1 427 462752197 462751785 6.340000e-84 322.0
16 TraesCS4A01G011600 chr4D 96.429 56 2 0 2738 2793 456678504 456678449 5.410000e-15 93.5
17 TraesCS4A01G011600 chr4D 86.747 83 3 5 2296 2378 462746169 462746095 9.050000e-13 86.1
18 TraesCS4A01G011600 chr7B 88.991 109 12 0 3650 3758 667748919 667749027 8.860000e-28 135.0
19 TraesCS4A01G011600 chr7A 88.991 109 12 0 3650 3758 686020111 686020003 8.860000e-28 135.0
20 TraesCS4A01G011600 chr7A 86.885 61 7 1 2726 2785 686020835 686020775 3.280000e-07 67.6
21 TraesCS4A01G011600 chr7D 88.073 109 13 0 3650 3758 593237227 593237119 4.120000e-26 130.0
22 TraesCS4A01G011600 chr6D 88.182 110 12 1 3644 3752 291235617 291235726 4.120000e-26 130.0
23 TraesCS4A01G011600 chr3D 86.607 112 13 2 3648 3758 504732930 504733040 6.900000e-24 122.0
24 TraesCS4A01G011600 chr3D 94.872 39 2 0 1294 1332 317722011 317722049 1.530000e-05 62.1
25 TraesCS4A01G011600 chr3A 85.714 112 14 2 3648 3758 642921982 642922092 3.210000e-22 117.0
26 TraesCS4A01G011600 chr3A 88.136 59 7 0 2715 2773 642920565 642920623 2.530000e-08 71.3
27 TraesCS4A01G011600 chr3A 97.561 41 0 1 1298 1337 670644335 670644375 9.110000e-08 69.4
28 TraesCS4A01G011600 chr3B 84.821 112 15 2 3648 3758 666446827 666446937 1.490000e-20 111.0
29 TraesCS4A01G011600 chr3B 88.136 59 7 0 2715 2773 666445620 666445678 2.530000e-08 71.3
30 TraesCS4A01G011600 chr1A 95.000 40 1 1 1297 1335 277004180 277004141 1.530000e-05 62.1
31 TraesCS4A01G011600 chr1A 95.000 40 1 1 1297 1335 485564270 485564231 1.530000e-05 62.1
32 TraesCS4A01G011600 chr1A 94.872 39 1 1 1298 1335 490778330 490778292 5.490000e-05 60.2
33 TraesCS4A01G011600 chr1A 97.222 36 0 1 1298 1332 575710110 575710075 5.490000e-05 60.2
34 TraesCS4A01G011600 chr1A 97.222 36 0 1 1298 1332 575723031 575722996 5.490000e-05 60.2
35 TraesCS4A01G011600 chr1A 97.222 36 0 1 1298 1332 575735953 575735918 5.490000e-05 60.2
36 TraesCS4A01G011600 chr5B 97.143 35 1 0 2082 2116 56560638 56560672 5.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G011600 chr4A 6633636 6638708 5072 True 9369.0000 9369 100.000000 1 5073 1 chr4A.!!$R1 5072
1 TraesCS4A01G011600 chr4B 578223109 578228520 5411 False 1366.7500 2427 86.678250 3 5072 4 chr4B.!!$F2 5069
2 TraesCS4A01G011600 chr4D 462742966 462752197 9231 True 756.7625 1746 89.217875 1 5073 8 chr4D.!!$R2 5072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 330 0.165079 CGTTTGATTTGTCCGTCCGG 59.835 55.0 0.00 0.0 0.00 5.14 F
1200 4964 0.173481 GCTCTGTGCAGTACGATGGA 59.827 55.0 0.00 0.0 42.31 3.41 F
2107 5943 0.239347 GTGCTCAAGCTTTGCATCGT 59.761 50.0 21.88 0.0 42.66 3.73 F
3243 7289 0.042731 TTTCCACCACCCCAAAACCA 59.957 50.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 5977 0.233590 CGAATCAACGCACGAACCAA 59.766 50.0 0.00 0.00 0.00 3.67 R
2513 6421 0.253610 AATTTATGTGGGTCGCCGGA 59.746 50.0 5.05 0.00 0.00 5.14 R
3490 7854 0.791422 TTAACCATGTGCGCGTGTAC 59.209 50.0 17.79 10.48 0.00 2.90 R
4547 8973 0.796927 TACGACAGAGACAGCACTCG 59.203 55.0 0.00 0.00 41.25 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.038417 GCTTCACGTGAGCGCTGT 61.038 61.111 25.48 3.02 42.83 4.40
20 21 2.849007 CTTCACGTGAGCGCTGTG 59.151 61.111 18.48 17.98 42.83 3.66
21 22 3.287121 CTTCACGTGAGCGCTGTGC 62.287 63.158 18.48 4.76 46.98 4.57
71 72 4.492160 TCGATCCGCGTGCAGTCC 62.492 66.667 4.92 0.00 41.80 3.85
84 85 3.060000 AGTCCCGCGTCGTCATCA 61.060 61.111 4.92 0.00 0.00 3.07
85 86 2.879462 GTCCCGCGTCGTCATCAC 60.879 66.667 4.92 0.00 0.00 3.06
86 87 4.124351 TCCCGCGTCGTCATCACC 62.124 66.667 4.92 0.00 0.00 4.02
120 121 1.268335 CCCGTTTGAAAACCACGTCAG 60.268 52.381 0.49 0.00 35.51 3.51
127 128 1.464997 GAAAACCACGTCAGCTCCATC 59.535 52.381 0.00 0.00 0.00 3.51
128 129 0.321653 AAACCACGTCAGCTCCATCC 60.322 55.000 0.00 0.00 0.00 3.51
129 130 1.480212 AACCACGTCAGCTCCATCCA 61.480 55.000 0.00 0.00 0.00 3.41
130 131 1.448540 CCACGTCAGCTCCATCCAC 60.449 63.158 0.00 0.00 0.00 4.02
133 134 2.187946 GTCAGCTCCATCCACCCG 59.812 66.667 0.00 0.00 0.00 5.28
187 188 1.058695 GCATCGGACGTGACGTTTTAG 59.941 52.381 13.44 4.44 41.37 1.85
193 194 3.177487 GGACGTGACGTTTTAGAGATCC 58.823 50.000 13.44 0.99 41.37 3.36
199 200 4.499758 GTGACGTTTTAGAGATCCATCGAC 59.500 45.833 0.00 0.00 0.00 4.20
215 216 1.520666 GACCGATCGATGGGTGGTT 59.479 57.895 33.40 11.75 39.11 3.67
216 217 0.748450 GACCGATCGATGGGTGGTTA 59.252 55.000 33.40 0.00 39.11 2.85
217 218 1.137479 GACCGATCGATGGGTGGTTAA 59.863 52.381 33.40 0.00 39.11 2.01
225 226 2.940410 CGATGGGTGGTTAATAAGCGTT 59.060 45.455 0.00 0.00 0.00 4.84
247 248 4.250464 TCGATTACCGATGAAATATGGGC 58.750 43.478 0.00 0.00 43.23 5.36
265 268 2.196776 GGGGGCACTGATCCCATG 59.803 66.667 10.22 0.00 45.73 3.66
267 270 2.276409 GGGCACTGATCCCATGCA 59.724 61.111 13.14 0.00 43.37 3.96
269 272 1.461091 GGGCACTGATCCCATGCATG 61.461 60.000 20.19 20.19 43.37 4.06
270 273 0.754217 GGCACTGATCCCATGCATGT 60.754 55.000 24.58 6.98 41.27 3.21
271 274 1.108776 GCACTGATCCCATGCATGTT 58.891 50.000 24.58 9.64 39.23 2.71
273 276 2.093869 GCACTGATCCCATGCATGTTTT 60.094 45.455 24.58 8.92 39.23 2.43
274 277 3.517602 CACTGATCCCATGCATGTTTTG 58.482 45.455 24.58 9.62 0.00 2.44
275 278 3.056393 CACTGATCCCATGCATGTTTTGT 60.056 43.478 24.58 12.44 0.00 2.83
276 279 3.194116 ACTGATCCCATGCATGTTTTGTC 59.806 43.478 24.58 14.70 0.00 3.18
278 281 1.614996 TCCCATGCATGTTTTGTCGT 58.385 45.000 24.58 0.00 0.00 4.34
279 282 1.269174 TCCCATGCATGTTTTGTCGTG 59.731 47.619 24.58 6.40 0.00 4.35
280 283 1.669502 CCCATGCATGTTTTGTCGTGG 60.670 52.381 24.58 11.63 37.83 4.94
281 284 1.269174 CCATGCATGTTTTGTCGTGGA 59.731 47.619 24.58 0.00 39.18 4.02
282 285 2.094597 CCATGCATGTTTTGTCGTGGAT 60.095 45.455 24.58 0.00 39.18 3.41
283 286 3.128415 CCATGCATGTTTTGTCGTGGATA 59.872 43.478 24.58 0.00 39.18 2.59
284 287 4.202040 CCATGCATGTTTTGTCGTGGATAT 60.202 41.667 24.58 0.00 39.18 1.63
285 288 5.008514 CCATGCATGTTTTGTCGTGGATATA 59.991 40.000 24.58 0.00 39.18 0.86
286 289 5.478233 TGCATGTTTTGTCGTGGATATAC 57.522 39.130 0.00 0.00 0.00 1.47
287 290 4.938226 TGCATGTTTTGTCGTGGATATACA 59.062 37.500 0.00 0.00 0.00 2.29
290 293 5.849357 TGTTTTGTCGTGGATATACACAC 57.151 39.130 18.24 14.39 41.38 3.82
325 328 3.343380 AAACGTTTGATTTGTCCGTCC 57.657 42.857 13.81 0.00 0.00 4.79
327 330 0.165079 CGTTTGATTTGTCCGTCCGG 59.835 55.000 0.00 0.00 0.00 5.14
328 331 0.519961 GTTTGATTTGTCCGTCCGGG 59.480 55.000 0.00 0.00 35.59 5.73
329 332 1.238625 TTTGATTTGTCCGTCCGGGC 61.239 55.000 0.00 2.79 41.01 6.13
330 333 2.119484 TTGATTTGTCCGTCCGGGCT 62.119 55.000 12.04 0.00 41.25 5.19
331 334 1.376812 GATTTGTCCGTCCGGGCTT 60.377 57.895 12.04 0.00 41.25 4.35
333 336 2.119484 ATTTGTCCGTCCGGGCTTGA 62.119 55.000 12.04 0.00 41.25 3.02
334 337 2.119484 TTTGTCCGTCCGGGCTTGAT 62.119 55.000 12.04 0.00 41.25 2.57
336 339 2.682136 TCCGTCCGGGCTTGATGA 60.682 61.111 3.66 0.00 34.94 2.92
338 341 1.595382 CCGTCCGGGCTTGATGATC 60.595 63.158 3.66 0.00 0.00 2.92
339 342 1.443407 CGTCCGGGCTTGATGATCT 59.557 57.895 3.66 0.00 0.00 2.75
341 344 1.743772 CGTCCGGGCTTGATGATCTTT 60.744 52.381 3.66 0.00 0.00 2.52
342 345 1.672881 GTCCGGGCTTGATGATCTTTG 59.327 52.381 0.00 0.00 0.00 2.77
343 346 1.027357 CCGGGCTTGATGATCTTTGG 58.973 55.000 0.00 0.00 0.00 3.28
344 347 1.408683 CCGGGCTTGATGATCTTTGGA 60.409 52.381 0.00 0.00 0.00 3.53
345 348 1.672881 CGGGCTTGATGATCTTTGGAC 59.327 52.381 0.00 0.00 0.00 4.02
346 349 2.681976 CGGGCTTGATGATCTTTGGACT 60.682 50.000 0.00 0.00 0.00 3.85
348 351 3.766051 GGGCTTGATGATCTTTGGACTTT 59.234 43.478 0.00 0.00 0.00 2.66
350 353 4.381292 GGCTTGATGATCTTTGGACTTTGG 60.381 45.833 0.00 0.00 0.00 3.28
351 354 4.381292 GCTTGATGATCTTTGGACTTTGGG 60.381 45.833 0.00 0.00 0.00 4.12
353 356 4.335416 TGATGATCTTTGGACTTTGGGTC 58.665 43.478 0.00 0.00 43.79 4.46
404 424 1.922135 AATTCCCGCGTGCATGTGAC 61.922 55.000 20.97 0.00 0.00 3.67
411 431 2.094659 CGTGCATGTGACGACCCTC 61.095 63.158 12.45 0.00 39.21 4.30
412 432 1.293498 GTGCATGTGACGACCCTCT 59.707 57.895 0.00 0.00 0.00 3.69
413 433 1.016130 GTGCATGTGACGACCCTCTG 61.016 60.000 0.00 0.00 0.00 3.35
414 434 1.184970 TGCATGTGACGACCCTCTGA 61.185 55.000 0.00 0.00 0.00 3.27
418 438 2.283676 TGACGACCCTCTGACCCC 60.284 66.667 0.00 0.00 0.00 4.95
419 439 3.075641 GACGACCCTCTGACCCCC 61.076 72.222 0.00 0.00 0.00 5.40
450 480 6.038271 GTGAGAGAACAAACACCAACACTAAT 59.962 38.462 0.00 0.00 0.00 1.73
452 482 7.771361 TGAGAGAACAAACACCAACACTAATAA 59.229 33.333 0.00 0.00 0.00 1.40
455 485 9.744468 GAGAACAAACACCAACACTAATAAAAT 57.256 29.630 0.00 0.00 0.00 1.82
459 489 9.959749 ACAAACACCAACACTAATAAAATACTG 57.040 29.630 0.00 0.00 0.00 2.74
460 490 9.959749 CAAACACCAACACTAATAAAATACTGT 57.040 29.630 0.00 0.00 0.00 3.55
473 4200 8.928270 AATAAAATACTGTAACCTCTCACTCG 57.072 34.615 0.00 0.00 0.00 4.18
481 4208 4.763279 TGTAACCTCTCACTCGTATTCACA 59.237 41.667 0.00 0.00 0.00 3.58
489 4216 3.917985 TCACTCGTATTCACACATTCACG 59.082 43.478 0.00 0.00 0.00 4.35
490 4217 2.666508 ACTCGTATTCACACATTCACGC 59.333 45.455 0.00 0.00 0.00 5.34
491 4218 2.923655 CTCGTATTCACACATTCACGCT 59.076 45.455 0.00 0.00 0.00 5.07
492 4219 2.921121 TCGTATTCACACATTCACGCTC 59.079 45.455 0.00 0.00 0.00 5.03
493 4220 2.284457 CGTATTCACACATTCACGCTCG 60.284 50.000 0.00 0.00 0.00 5.03
547 4288 2.742372 CGGACCCCAACGCAGAAG 60.742 66.667 0.00 0.00 0.00 2.85
572 4313 1.663379 CTCCGGACCACACTCGCATA 61.663 60.000 0.00 0.00 0.00 3.14
573 4314 1.518572 CCGGACCACACTCGCATAC 60.519 63.158 0.00 0.00 0.00 2.39
574 4315 1.872234 CGGACCACACTCGCATACG 60.872 63.158 0.00 0.00 42.01 3.06
650 4391 2.158460 AGACTTGGTTTCCTTCCCCTTG 60.158 50.000 0.00 0.00 0.00 3.61
667 4408 4.141344 CCCCTTGCTACTCTACTCTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
675 4416 7.041167 TGCTACTCTACTCTACTCTACTCTACG 60.041 44.444 0.00 0.00 0.00 3.51
680 4421 4.858935 ACTCTACTCTACTCTACGCTACG 58.141 47.826 0.00 0.00 0.00 3.51
681 4422 3.637432 TCTACTCTACTCTACGCTACGC 58.363 50.000 0.00 0.00 0.00 4.42
682 4423 2.600470 ACTCTACTCTACGCTACGCT 57.400 50.000 0.00 0.00 0.00 5.07
683 4424 3.724508 ACTCTACTCTACGCTACGCTA 57.275 47.619 0.00 0.00 0.00 4.26
684 4425 3.380142 ACTCTACTCTACGCTACGCTAC 58.620 50.000 0.00 0.00 0.00 3.58
685 4426 3.181482 ACTCTACTCTACGCTACGCTACA 60.181 47.826 0.00 0.00 0.00 2.74
686 4427 3.119291 TCTACTCTACGCTACGCTACAC 58.881 50.000 0.00 0.00 0.00 2.90
687 4428 2.021355 ACTCTACGCTACGCTACACT 57.979 50.000 0.00 0.00 0.00 3.55
704 4445 4.367386 ACACTAGTAGTACCGCATTCAC 57.633 45.455 1.57 0.00 0.00 3.18
708 4449 3.505464 AGTAGTACCGCATTCACTCAC 57.495 47.619 0.00 0.00 0.00 3.51
738 4495 0.744414 CATTCCACCACCCTACGCTG 60.744 60.000 0.00 0.00 0.00 5.18
762 4519 1.072331 CGGTGCCCAAATATAGCTCCT 59.928 52.381 0.00 0.00 37.88 3.69
765 4522 1.160137 GCCCAAATATAGCTCCTGCG 58.840 55.000 0.00 0.00 45.42 5.18
766 4523 1.543429 GCCCAAATATAGCTCCTGCGT 60.543 52.381 0.00 0.00 45.42 5.24
767 4524 2.289444 GCCCAAATATAGCTCCTGCGTA 60.289 50.000 0.00 0.00 45.42 4.42
780 4539 4.494764 GCTCCTGCGTATATATAAACGTCG 59.505 45.833 9.22 3.38 41.10 5.12
789 4548 6.183360 CGTATATATAAACGTCGAAAAGGGGC 60.183 42.308 0.00 0.00 34.48 5.80
834 4594 3.157881 CCCGAGCACCAATCTAGATAGA 58.842 50.000 5.46 0.00 36.65 1.98
835 4595 3.766591 CCCGAGCACCAATCTAGATAGAT 59.233 47.826 5.46 0.00 44.54 1.98
836 4596 4.950475 CCCGAGCACCAATCTAGATAGATA 59.050 45.833 5.46 0.00 41.96 1.98
837 4597 5.067153 CCCGAGCACCAATCTAGATAGATAG 59.933 48.000 5.46 1.52 41.96 2.08
840 4600 4.714308 AGCACCAATCTAGATAGATAGCCC 59.286 45.833 5.46 0.00 41.96 5.19
904 4668 2.817834 CGGCCGGCAAAAGATCGA 60.818 61.111 30.85 0.00 0.00 3.59
905 4669 2.180204 CGGCCGGCAAAAGATCGAT 61.180 57.895 30.85 0.00 0.00 3.59
906 4670 1.649267 GGCCGGCAAAAGATCGATC 59.351 57.895 30.85 17.91 0.00 3.69
907 4671 1.276844 GCCGGCAAAAGATCGATCG 59.723 57.895 24.80 9.36 0.00 3.69
949 4713 2.303311 CGTTTCCTTTTCTCCTCCTCCT 59.697 50.000 0.00 0.00 0.00 3.69
950 4714 3.617775 CGTTTCCTTTTCTCCTCCTCCTC 60.618 52.174 0.00 0.00 0.00 3.71
951 4715 2.255770 TCCTTTTCTCCTCCTCCTCC 57.744 55.000 0.00 0.00 0.00 4.30
977 4741 0.457851 TTTTGGTTCTGTGCGTTGGG 59.542 50.000 0.00 0.00 0.00 4.12
996 4760 0.336737 GGGAGAAGTGGAGGAGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
997 4761 1.062505 GGGAGAAGTGGAGGAGGAGAT 60.063 57.143 0.00 0.00 0.00 2.75
998 4762 2.316108 GGAGAAGTGGAGGAGGAGATC 58.684 57.143 0.00 0.00 0.00 2.75
1010 4774 2.029470 GGAGGAGATCGATGGACATGAC 60.029 54.545 0.54 0.00 0.00 3.06
1014 4778 1.069823 AGATCGATGGACATGACCAGC 59.930 52.381 20.42 20.42 43.49 4.85
1044 4808 1.065782 GGCTTCTCCTTGTCTTCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
1197 4961 1.139734 CGGCTCTGTGCAGTACGAT 59.860 57.895 3.96 0.00 45.15 3.73
1200 4964 0.173481 GCTCTGTGCAGTACGATGGA 59.827 55.000 0.00 0.00 42.31 3.41
1211 4975 8.500474 GTGCAGTACGATGGACAAGGTAACTA 62.500 46.154 2.44 0.00 42.96 2.24
1277 5041 0.382873 TCGGATCATTGCTTGCATGC 59.617 50.000 17.19 17.19 0.00 4.06
1307 5071 1.763968 TCCTGTCATGTACTCCTCCG 58.236 55.000 0.00 0.00 0.00 4.63
1308 5072 0.747255 CCTGTCATGTACTCCTCCGG 59.253 60.000 0.00 0.00 0.00 5.14
1309 5073 1.475403 CTGTCATGTACTCCTCCGGT 58.525 55.000 0.00 0.00 0.00 5.28
1310 5074 1.405821 CTGTCATGTACTCCTCCGGTC 59.594 57.143 0.00 0.00 0.00 4.79
1312 5076 0.629596 TCATGTACTCCTCCGGTCCT 59.370 55.000 0.00 0.00 0.00 3.85
1313 5077 1.006758 TCATGTACTCCTCCGGTCCTT 59.993 52.381 0.00 0.00 0.00 3.36
1315 5079 2.019807 TGTACTCCTCCGGTCCTTTT 57.980 50.000 0.00 0.00 0.00 2.27
1316 5080 2.332117 TGTACTCCTCCGGTCCTTTTT 58.668 47.619 0.00 0.00 0.00 1.94
1317 5081 3.509442 TGTACTCCTCCGGTCCTTTTTA 58.491 45.455 0.00 0.00 0.00 1.52
1318 5082 3.259123 TGTACTCCTCCGGTCCTTTTTAC 59.741 47.826 0.00 0.00 0.00 2.01
1319 5083 2.617658 ACTCCTCCGGTCCTTTTTACT 58.382 47.619 0.00 0.00 0.00 2.24
1320 5084 2.566279 ACTCCTCCGGTCCTTTTTACTC 59.434 50.000 0.00 0.00 0.00 2.59
1321 5085 2.832733 CTCCTCCGGTCCTTTTTACTCT 59.167 50.000 0.00 0.00 0.00 3.24
1322 5086 2.565834 TCCTCCGGTCCTTTTTACTCTG 59.434 50.000 0.00 0.00 0.00 3.35
1323 5087 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
1324 5088 1.076332 CCGGTCCTTTTTACTCTGCG 58.924 55.000 0.00 0.00 0.00 5.18
1325 5089 1.607251 CCGGTCCTTTTTACTCTGCGT 60.607 52.381 0.00 0.00 0.00 5.24
1326 5090 2.353011 CCGGTCCTTTTTACTCTGCGTA 60.353 50.000 0.00 0.00 0.00 4.42
1327 5091 3.518590 CGGTCCTTTTTACTCTGCGTAT 58.481 45.455 0.00 0.00 0.00 3.06
1328 5092 3.930848 CGGTCCTTTTTACTCTGCGTATT 59.069 43.478 0.00 0.00 0.00 1.89
1329 5093 5.104374 CGGTCCTTTTTACTCTGCGTATTA 58.896 41.667 0.00 0.00 0.00 0.98
1330 5094 5.231568 CGGTCCTTTTTACTCTGCGTATTAG 59.768 44.000 0.00 0.00 0.00 1.73
1331 5095 6.335777 GGTCCTTTTTACTCTGCGTATTAGA 58.664 40.000 0.00 0.00 0.00 2.10
1332 5096 6.815142 GGTCCTTTTTACTCTGCGTATTAGAA 59.185 38.462 0.00 0.00 0.00 2.10
1333 5097 7.494952 GGTCCTTTTTACTCTGCGTATTAGAAT 59.505 37.037 0.00 0.00 0.00 2.40
1334 5098 8.880750 GTCCTTTTTACTCTGCGTATTAGAATT 58.119 33.333 0.00 0.00 0.00 2.17
1335 5099 9.095065 TCCTTTTTACTCTGCGTATTAGAATTC 57.905 33.333 0.00 0.00 0.00 2.17
1336 5100 9.099454 CCTTTTTACTCTGCGTATTAGAATTCT 57.901 33.333 13.56 13.56 0.00 2.40
1342 5106 8.680039 ACTCTGCGTATTAGAATTCTACTACT 57.320 34.615 27.22 13.81 34.41 2.57
1343 5107 8.776470 ACTCTGCGTATTAGAATTCTACTACTC 58.224 37.037 27.22 23.15 34.41 2.59
1344 5108 8.097078 TCTGCGTATTAGAATTCTACTACTCC 57.903 38.462 27.22 21.20 34.41 3.85
1345 5109 7.937942 TCTGCGTATTAGAATTCTACTACTCCT 59.062 37.037 27.22 8.72 34.41 3.69
1346 5110 9.217278 CTGCGTATTAGAATTCTACTACTCCTA 57.783 37.037 27.22 16.08 34.41 2.94
1347 5111 9.736414 TGCGTATTAGAATTCTACTACTCCTAT 57.264 33.333 27.22 15.11 34.41 2.57
1372 5139 9.736414 ATATATCCAAGTCTAACTAACGCTAGA 57.264 33.333 0.00 0.00 0.00 2.43
1385 5152 8.773404 AACTAACGCTAGAATGAAAACTACAT 57.227 30.769 0.00 0.00 0.00 2.29
1391 5158 9.811995 ACGCTAGAATGAAAACTACATATGTTA 57.188 29.630 14.77 0.00 0.00 2.41
1405 5181 6.721571 ACATATGTTAACCTTGTTCGACAG 57.278 37.500 1.41 0.00 0.00 3.51
1421 5197 1.280746 CAGCTCGCTGGTGTTGTTG 59.719 57.895 10.98 0.00 40.17 3.33
1422 5198 1.893808 AGCTCGCTGGTGTTGTTGG 60.894 57.895 0.00 0.00 0.00 3.77
1423 5199 1.891919 GCTCGCTGGTGTTGTTGGA 60.892 57.895 0.00 0.00 0.00 3.53
1428 5204 1.268539 CGCTGGTGTTGTTGGAAGTTC 60.269 52.381 0.00 0.00 0.00 3.01
1429 5205 2.024414 GCTGGTGTTGTTGGAAGTTCT 58.976 47.619 2.25 0.00 0.00 3.01
1430 5206 2.223572 GCTGGTGTTGTTGGAAGTTCTG 60.224 50.000 2.25 0.00 0.00 3.02
1433 5209 2.099098 GGTGTTGTTGGAAGTTCTGGTG 59.901 50.000 2.25 0.00 0.00 4.17
1434 5210 2.752903 GTGTTGTTGGAAGTTCTGGTGT 59.247 45.455 2.25 0.00 0.00 4.16
1435 5211 3.013921 TGTTGTTGGAAGTTCTGGTGTC 58.986 45.455 2.25 0.00 0.00 3.67
1436 5212 3.279434 GTTGTTGGAAGTTCTGGTGTCT 58.721 45.455 2.25 0.00 0.00 3.41
1445 5264 4.487714 AGTTCTGGTGTCTCTCAACAAA 57.512 40.909 0.00 0.00 43.67 2.83
1451 5270 2.291741 GGTGTCTCTCAACAAAGCCTTG 59.708 50.000 0.00 0.00 38.61 3.61
1454 5273 2.225255 GTCTCTCAACAAAGCCTTGAGC 59.775 50.000 1.09 0.00 42.99 4.26
1470 5289 4.276678 CCTTGAGCTTGTGTTTGATCAGAA 59.723 41.667 0.00 0.00 30.15 3.02
1476 5295 6.444633 AGCTTGTGTTTGATCAGAATCTTTG 58.555 36.000 0.00 0.00 32.75 2.77
1488 5308 9.003658 TGATCAGAATCTTTGGTCTAACTTTTC 57.996 33.333 0.00 0.00 32.75 2.29
1510 5330 1.214673 ACAGATTGGAGGCATCAGCAT 59.785 47.619 0.00 0.00 44.61 3.79
1639 5459 2.030562 CACCACCAGGACGTCCAC 59.969 66.667 35.00 10.66 38.89 4.02
1681 5501 3.944250 CTTCCAGGGCAATGGCGGT 62.944 63.158 0.00 0.00 42.47 5.68
1758 5578 2.928396 CCTCCCGGACCACCACTT 60.928 66.667 0.73 0.00 35.59 3.16
1765 5585 1.678970 GGACCACCACTTCATGCCC 60.679 63.158 0.00 0.00 35.97 5.36
1927 5750 1.872234 CCGGCAGTCGATGTACGTG 60.872 63.158 0.00 0.00 42.43 4.49
1930 5753 2.165301 GCAGTCGATGTACGTGCCC 61.165 63.158 0.00 0.00 43.13 5.36
2101 5937 0.308684 TCTTGCGTGCTCAAGCTTTG 59.691 50.000 0.00 0.00 42.29 2.77
2102 5938 1.273455 CTTGCGTGCTCAAGCTTTGC 61.273 55.000 12.75 12.75 42.66 3.68
2103 5939 2.002509 TTGCGTGCTCAAGCTTTGCA 62.003 50.000 17.02 17.02 42.66 4.08
2104 5940 1.080974 GCGTGCTCAAGCTTTGCAT 60.081 52.632 21.88 0.00 42.66 3.96
2105 5941 1.069378 GCGTGCTCAAGCTTTGCATC 61.069 55.000 21.88 14.90 42.66 3.91
2106 5942 0.791983 CGTGCTCAAGCTTTGCATCG 60.792 55.000 21.88 20.84 42.66 3.84
2107 5943 0.239347 GTGCTCAAGCTTTGCATCGT 59.761 50.000 21.88 0.00 42.66 3.73
2127 5974 3.637432 GTTTGCACGTTCATGGATTCAA 58.363 40.909 0.00 0.00 0.00 2.69
2130 5977 1.470098 GCACGTTCATGGATTCAAGCT 59.530 47.619 0.00 0.00 0.00 3.74
2139 5986 1.879380 TGGATTCAAGCTTGGTTCGTG 59.121 47.619 25.73 0.00 0.00 4.35
2148 5995 1.950472 CTTGGTTCGTGCGTTGATTC 58.050 50.000 0.00 0.00 0.00 2.52
2249 6096 1.078567 GCAAGGTGAGCTCCTCCTG 60.079 63.158 22.60 17.79 38.67 3.86
2253 6100 0.754957 AGGTGAGCTCCTCCTGATCG 60.755 60.000 21.66 0.00 37.38 3.69
2270 6117 3.751175 TGATCGGATCAAGAACCACAAAC 59.249 43.478 17.94 0.00 36.11 2.93
2350 6222 3.394588 GCCGAATGCAACGATCGA 58.605 55.556 24.34 0.00 38.82 3.59
2420 6315 1.336240 GGTCTTGCTGTCCATTGTTGC 60.336 52.381 0.00 0.00 0.00 4.17
2423 6318 1.610038 CTTGCTGTCCATTGTTGCTGA 59.390 47.619 0.00 0.00 0.00 4.26
2425 6320 1.814394 TGCTGTCCATTGTTGCTGATC 59.186 47.619 0.00 0.00 0.00 2.92
2426 6321 1.814394 GCTGTCCATTGTTGCTGATCA 59.186 47.619 0.00 0.00 0.00 2.92
2427 6322 2.426024 GCTGTCCATTGTTGCTGATCAT 59.574 45.455 0.00 0.00 0.00 2.45
2428 6323 3.733988 GCTGTCCATTGTTGCTGATCATG 60.734 47.826 0.00 0.00 0.00 3.07
2430 6325 2.756760 GTCCATTGTTGCTGATCATGGT 59.243 45.455 8.68 0.00 0.00 3.55
2433 6328 3.517602 CATTGTTGCTGATCATGGTTGG 58.482 45.455 0.00 0.00 0.00 3.77
2434 6329 1.548081 TGTTGCTGATCATGGTTGGG 58.452 50.000 0.00 0.00 0.00 4.12
2435 6330 1.203038 TGTTGCTGATCATGGTTGGGT 60.203 47.619 0.00 0.00 0.00 4.51
2436 6331 1.895131 GTTGCTGATCATGGTTGGGTT 59.105 47.619 0.00 0.00 0.00 4.11
2437 6332 2.299867 GTTGCTGATCATGGTTGGGTTT 59.700 45.455 0.00 0.00 0.00 3.27
2438 6333 1.894466 TGCTGATCATGGTTGGGTTTG 59.106 47.619 0.00 0.00 0.00 2.93
2439 6334 2.170166 GCTGATCATGGTTGGGTTTGA 58.830 47.619 0.00 0.00 0.00 2.69
2440 6335 2.165030 GCTGATCATGGTTGGGTTTGAG 59.835 50.000 0.00 0.00 0.00 3.02
2441 6336 2.165030 CTGATCATGGTTGGGTTTGAGC 59.835 50.000 0.00 0.00 0.00 4.26
2453 6361 1.269778 GGTTTGAGCTTTGAAGGTGGC 60.270 52.381 0.00 0.00 36.78 5.01
2513 6421 2.663196 GCGCTCAAGTACTGGGGT 59.337 61.111 0.00 0.00 0.00 4.95
2516 6424 1.218316 GCTCAAGTACTGGGGTCCG 59.782 63.158 0.00 0.00 0.00 4.79
2517 6425 1.898154 CTCAAGTACTGGGGTCCGG 59.102 63.158 0.00 0.00 35.68 5.14
2541 6449 3.623703 ACCCACATAAATTTCCCGGTAC 58.376 45.455 0.00 0.00 0.00 3.34
2572 6506 0.541764 TGCTGTTAAAAGCCCAGGGG 60.542 55.000 15.16 3.48 42.83 4.79
2591 6535 2.869503 GATGTGGTGTGTAGGGGCCG 62.870 65.000 0.00 0.00 0.00 6.13
2596 6540 4.401876 TGTGTAGGGGCCGGCCTA 62.402 66.667 42.70 27.01 36.10 3.93
2597 6541 3.547513 GTGTAGGGGCCGGCCTAG 61.548 72.222 42.70 0.00 36.10 3.02
2598 6542 4.084147 TGTAGGGGCCGGCCTAGT 62.084 66.667 42.70 28.90 36.10 2.57
2605 6549 1.526917 GGCCGGCCTAGTCGTAGTA 60.527 63.158 38.76 0.00 0.00 1.82
2607 6551 1.790090 GCCGGCCTAGTCGTAGTACC 61.790 65.000 18.11 0.00 0.00 3.34
2612 6556 2.579873 GCCTAGTCGTAGTACCATGGA 58.420 52.381 21.47 0.00 0.00 3.41
2621 6565 4.899457 TCGTAGTACCATGGATCATTCCTT 59.101 41.667 21.47 0.00 43.07 3.36
2623 6567 4.713792 AGTACCATGGATCATTCCTTCC 57.286 45.455 21.47 0.00 43.07 3.46
2626 6570 1.203100 CCATGGATCATTCCTTCCCCC 60.203 57.143 5.56 0.00 43.07 5.40
2649 6598 8.197439 CCCCCTTTAACTTGCTATTGATTAAAG 58.803 37.037 7.50 7.50 40.28 1.85
2650 6599 8.749354 CCCCTTTAACTTGCTATTGATTAAAGT 58.251 33.333 11.68 0.00 39.53 2.66
2651 6600 9.573133 CCCTTTAACTTGCTATTGATTAAAGTG 57.427 33.333 11.68 0.43 39.53 3.16
2652 6601 9.573133 CCTTTAACTTGCTATTGATTAAAGTGG 57.427 33.333 11.68 0.00 39.53 4.00
2675 6631 6.649141 TGGTTAGTACTACAGCAGATGTTTTG 59.351 38.462 0.91 0.00 39.96 2.44
2681 6637 6.246420 ACTACAGCAGATGTTTTGAATGTC 57.754 37.500 0.00 0.00 39.96 3.06
2684 6640 5.068636 ACAGCAGATGTTTTGAATGTCTCT 58.931 37.500 0.00 0.00 39.96 3.10
2807 6771 4.840005 GGTGCGCCAGTAGCCTCC 62.840 72.222 12.58 0.00 38.78 4.30
2808 6772 4.082523 GTGCGCCAGTAGCCTCCA 62.083 66.667 4.18 0.00 38.78 3.86
2809 6773 3.774528 TGCGCCAGTAGCCTCCAG 61.775 66.667 4.18 0.00 38.78 3.86
2816 6780 2.966516 GCCAGTAGCCTCCAGTAGTAAT 59.033 50.000 0.00 0.00 34.35 1.89
2818 6782 4.501743 GCCAGTAGCCTCCAGTAGTAATTC 60.502 50.000 0.00 0.00 34.35 2.17
2839 6803 6.783708 TTCTTTCTTGGCTTCCTGTTTTTA 57.216 33.333 0.00 0.00 0.00 1.52
2848 6812 6.644347 TGGCTTCCTGTTTTTATCTCTCTAG 58.356 40.000 0.00 0.00 0.00 2.43
2851 6815 6.983890 GCTTCCTGTTTTTATCTCTCTAGGAG 59.016 42.308 0.00 2.70 43.12 3.69
2854 6818 6.954684 TCCTGTTTTTATCTCTCTAGGAGTGT 59.045 38.462 7.76 2.83 42.40 3.55
2855 6819 7.455008 TCCTGTTTTTATCTCTCTAGGAGTGTT 59.545 37.037 7.76 0.00 42.40 3.32
2856 6820 8.097662 CCTGTTTTTATCTCTCTAGGAGTGTTT 58.902 37.037 7.76 0.00 42.40 2.83
2863 6827 9.970553 TTATCTCTCTAGGAGTGTTTAACTACA 57.029 33.333 7.76 0.00 43.01 2.74
2864 6828 7.925043 TCTCTCTAGGAGTGTTTAACTACAG 57.075 40.000 7.76 0.00 43.01 2.74
2865 6829 7.460071 TCTCTCTAGGAGTGTTTAACTACAGT 58.540 38.462 7.76 0.00 43.01 3.55
2891 6857 0.890542 TCAGTGATGCAGTGCCAACC 60.891 55.000 13.72 0.00 35.04 3.77
2901 6870 2.223479 GCAGTGCCAACCATTATTACCG 60.223 50.000 2.85 0.00 0.00 4.02
2906 6875 2.480587 GCCAACCATTATTACCGTTGCC 60.481 50.000 0.00 0.00 35.38 4.52
2916 6885 3.756933 TTACCGTTGCCAAGAACTACT 57.243 42.857 0.00 0.00 0.00 2.57
2917 6886 4.870123 TTACCGTTGCCAAGAACTACTA 57.130 40.909 0.00 0.00 0.00 1.82
2919 6888 2.631545 ACCGTTGCCAAGAACTACTACT 59.368 45.455 0.00 0.00 0.00 2.57
2922 6891 4.171754 CGTTGCCAAGAACTACTACTACC 58.828 47.826 0.00 0.00 0.00 3.18
2995 7041 7.541162 TGGCAAAATCTGATGAACATCTTAAG 58.459 34.615 14.50 0.00 38.60 1.85
3044 7090 5.517037 GAGTACAACTGTGTAATCTGTGC 57.483 43.478 6.99 1.12 46.80 4.57
3045 7091 4.315803 AGTACAACTGTGTAATCTGTGCC 58.684 43.478 0.00 0.00 41.89 5.01
3058 7104 3.821995 GTGCCCACACTTTCACGT 58.178 55.556 0.00 0.00 43.85 4.49
3242 7288 1.140052 CTTTTCCACCACCCCAAAACC 59.860 52.381 0.00 0.00 0.00 3.27
3243 7289 0.042731 TTTCCACCACCCCAAAACCA 59.957 50.000 0.00 0.00 0.00 3.67
3308 7666 1.935873 CACAAGTCACACACAGACAGG 59.064 52.381 0.00 0.00 38.46 4.00
3495 7859 9.836076 AGTTTTTGTTTTCTTACTCTTGTACAC 57.164 29.630 0.00 0.00 0.00 2.90
3496 7860 8.782327 GTTTTTGTTTTCTTACTCTTGTACACG 58.218 33.333 0.00 0.00 0.00 4.49
3497 7861 5.646467 TGTTTTCTTACTCTTGTACACGC 57.354 39.130 0.00 0.00 0.00 5.34
3498 7862 4.207635 TGTTTTCTTACTCTTGTACACGCG 59.792 41.667 3.53 3.53 0.00 6.01
3499 7863 1.973138 TCTTACTCTTGTACACGCGC 58.027 50.000 5.73 0.00 0.00 6.86
3500 7864 1.267533 TCTTACTCTTGTACACGCGCA 59.732 47.619 5.73 0.00 0.00 6.09
3502 7866 0.311477 TACTCTTGTACACGCGCACA 59.689 50.000 5.73 5.18 0.00 4.57
3505 7869 1.132436 CTTGTACACGCGCACATGG 59.868 57.895 5.73 0.96 0.00 3.66
3506 7870 1.565156 CTTGTACACGCGCACATGGT 61.565 55.000 5.73 0.00 0.00 3.55
3507 7871 1.160946 TTGTACACGCGCACATGGTT 61.161 50.000 5.73 0.00 0.00 3.67
3508 7872 0.319641 TGTACACGCGCACATGGTTA 60.320 50.000 5.73 0.00 0.00 2.85
3509 7873 0.791422 GTACACGCGCACATGGTTAA 59.209 50.000 5.73 0.00 0.00 2.01
3528 7892 5.535030 GGTTAATTCACTCCAAGTTCCAAGT 59.465 40.000 0.00 0.00 0.00 3.16
3540 7904 5.765182 CCAAGTTCCAAGTCTTAACAGTCAT 59.235 40.000 1.98 0.00 0.00 3.06
3609 7973 6.841443 TTTTTGTCATTTGTGCATGGTTAG 57.159 33.333 0.00 0.00 0.00 2.34
3610 7974 4.517952 TTGTCATTTGTGCATGGTTAGG 57.482 40.909 0.00 0.00 0.00 2.69
4073 8480 2.089349 GCGCTCTGGAACGACTGAC 61.089 63.158 0.00 0.00 0.00 3.51
4075 8482 1.079750 GCTCTGGAACGACTGACCC 60.080 63.158 0.00 0.00 0.00 4.46
4172 8581 2.425592 CGGTGGTGCAAGAGGACA 59.574 61.111 0.00 0.00 37.91 4.02
4248 8662 3.136123 GTGGGCTGCGATGCATGT 61.136 61.111 2.46 0.00 38.13 3.21
4351 8767 2.165301 GCATGCCACGACGTAGGAC 61.165 63.158 6.36 10.48 0.00 3.85
4407 8823 7.036220 GCCACTTACTATATGCCATGTACTAG 58.964 42.308 0.00 0.00 0.00 2.57
4456 8872 2.268298 GCCTACGGTGTTGTGTAGATG 58.732 52.381 1.17 0.00 40.36 2.90
4469 8893 0.671251 GTAGATGGAGCGGTGGAGAG 59.329 60.000 0.00 0.00 0.00 3.20
4547 8973 2.821991 AGTATTACATCGGCTGAGCC 57.178 50.000 14.89 14.89 46.75 4.70
4568 8994 2.159503 CGAGTGCTGTCTCTGTCGTAAT 60.160 50.000 0.00 0.00 32.83 1.89
4600 9026 1.078143 ATGCCTTGGAGAAGCCGAC 60.078 57.895 0.00 0.00 40.66 4.79
4617 9043 1.847818 GACGCAGCATACCGATGTTA 58.152 50.000 0.00 0.00 35.30 2.41
4618 9044 1.787155 GACGCAGCATACCGATGTTAG 59.213 52.381 0.00 0.00 35.30 2.34
4619 9045 1.407618 ACGCAGCATACCGATGTTAGA 59.592 47.619 0.00 0.00 35.30 2.10
4630 9057 1.204704 CGATGTTAGAGGTGGCAGTGA 59.795 52.381 0.00 0.00 0.00 3.41
4635 9062 4.394712 GAGGTGGCAGTGACCGGG 62.395 72.222 6.32 0.00 38.64 5.73
4642 9069 4.641645 CAGTGACCGGGGCTGCAA 62.642 66.667 6.32 0.00 0.00 4.08
4744 9173 2.483013 CCTCGTCCAACTCACAGAAACA 60.483 50.000 0.00 0.00 0.00 2.83
4788 9217 2.313172 CGCTGCGTGCTTCTTGTCT 61.313 57.895 14.93 0.00 40.11 3.41
4798 9227 1.291877 CTTCTTGTCTTGTCCCGCCG 61.292 60.000 0.00 0.00 0.00 6.46
5056 9760 9.757227 CAAGATTCTTTCCTGGACTAGTATAAG 57.243 37.037 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.879462 GTGATGACGACGCGGGAC 60.879 66.667 12.47 2.71 0.00 4.46
94 95 3.607661 TTTTCAAACGGGCCGGGC 61.608 61.111 31.78 22.00 0.00 6.13
97 98 1.299544 GTGGTTTTCAAACGGGCCG 60.300 57.895 27.06 27.06 39.77 6.13
101 102 1.858399 GCTGACGTGGTTTTCAAACGG 60.858 52.381 0.00 0.00 41.50 4.44
144 145 8.491331 TGCAAATATATTCTTTCTTTTTGGGC 57.509 30.769 0.00 0.00 0.00 5.36
199 200 2.543777 ATTAACCACCCATCGATCGG 57.456 50.000 16.41 7.60 0.00 4.18
247 248 3.492353 ATGGGATCAGTGCCCCCG 61.492 66.667 15.22 0.00 45.40 5.73
265 268 5.163804 TGTGTATATCCACGACAAAACATGC 60.164 40.000 0.00 0.00 38.20 4.06
267 270 5.935206 TGTGTGTATATCCACGACAAAACAT 59.065 36.000 0.00 0.00 38.20 2.71
269 272 5.177881 TGTGTGTGTATATCCACGACAAAAC 59.822 40.000 0.00 0.00 38.20 2.43
270 273 5.177881 GTGTGTGTGTATATCCACGACAAAA 59.822 40.000 5.12 0.00 38.20 2.44
271 274 4.687018 GTGTGTGTGTATATCCACGACAAA 59.313 41.667 5.12 0.00 38.20 2.83
273 276 3.256136 TGTGTGTGTGTATATCCACGACA 59.744 43.478 0.00 0.58 38.20 4.35
274 277 3.611113 GTGTGTGTGTGTATATCCACGAC 59.389 47.826 0.00 0.00 38.20 4.34
275 278 3.256136 TGTGTGTGTGTGTATATCCACGA 59.744 43.478 0.00 0.00 38.20 4.35
276 279 3.366724 GTGTGTGTGTGTGTATATCCACG 59.633 47.826 0.00 0.00 38.20 4.94
278 281 3.006003 ACGTGTGTGTGTGTGTATATCCA 59.994 43.478 0.00 0.00 0.00 3.41
279 282 3.581755 ACGTGTGTGTGTGTGTATATCC 58.418 45.455 0.00 0.00 0.00 2.59
280 283 6.693761 TTTACGTGTGTGTGTGTGTATATC 57.306 37.500 0.00 0.00 0.00 1.63
281 284 7.479897 TTTTTACGTGTGTGTGTGTGTATAT 57.520 32.000 0.00 0.00 0.00 0.86
282 285 6.898912 TTTTTACGTGTGTGTGTGTGTATA 57.101 33.333 0.00 0.00 0.00 1.47
283 286 5.798015 TTTTTACGTGTGTGTGTGTGTAT 57.202 34.783 0.00 0.00 0.00 2.29
307 310 0.863144 CGGACGGACAAATCAAACGT 59.137 50.000 0.00 0.00 40.85 3.99
309 312 0.519961 CCCGGACGGACAAATCAAAC 59.480 55.000 13.13 0.00 37.50 2.93
310 313 1.238625 GCCCGGACGGACAAATCAAA 61.239 55.000 13.13 0.00 37.50 2.69
312 315 2.046700 GCCCGGACGGACAAATCA 60.047 61.111 13.13 0.00 37.50 2.57
316 319 2.589157 ATCAAGCCCGGACGGACAA 61.589 57.895 13.13 0.00 37.50 3.18
317 320 3.000819 ATCAAGCCCGGACGGACA 61.001 61.111 13.13 0.00 37.50 4.02
318 321 2.311688 ATCATCAAGCCCGGACGGAC 62.312 60.000 13.13 0.00 37.50 4.79
320 323 1.595382 GATCATCAAGCCCGGACGG 60.595 63.158 0.73 3.25 0.00 4.79
321 324 0.179073 AAGATCATCAAGCCCGGACG 60.179 55.000 0.73 0.00 0.00 4.79
322 325 1.672881 CAAAGATCATCAAGCCCGGAC 59.327 52.381 0.73 0.00 0.00 4.79
323 326 1.408683 CCAAAGATCATCAAGCCCGGA 60.409 52.381 0.73 0.00 0.00 5.14
325 328 1.672881 GTCCAAAGATCATCAAGCCCG 59.327 52.381 0.00 0.00 0.00 6.13
327 330 4.381292 CCAAAGTCCAAAGATCATCAAGCC 60.381 45.833 0.00 0.00 0.00 4.35
328 331 4.381292 CCCAAAGTCCAAAGATCATCAAGC 60.381 45.833 0.00 0.00 0.00 4.01
329 332 4.768968 ACCCAAAGTCCAAAGATCATCAAG 59.231 41.667 0.00 0.00 0.00 3.02
330 333 4.739793 ACCCAAAGTCCAAAGATCATCAA 58.260 39.130 0.00 0.00 0.00 2.57
331 334 4.335416 GACCCAAAGTCCAAAGATCATCA 58.665 43.478 0.00 0.00 39.84 3.07
333 336 3.347216 CGACCCAAAGTCCAAAGATCAT 58.653 45.455 0.00 0.00 43.08 2.45
334 337 2.552155 CCGACCCAAAGTCCAAAGATCA 60.552 50.000 0.00 0.00 43.08 2.92
336 339 1.423921 ACCGACCCAAAGTCCAAAGAT 59.576 47.619 0.00 0.00 43.08 2.40
338 341 1.235724 GACCGACCCAAAGTCCAAAG 58.764 55.000 0.00 0.00 43.08 2.77
339 342 0.547075 TGACCGACCCAAAGTCCAAA 59.453 50.000 0.00 0.00 43.08 3.28
341 344 1.448497 GTGACCGACCCAAAGTCCA 59.552 57.895 0.00 0.00 43.08 4.02
342 345 1.302271 GGTGACCGACCCAAAGTCC 60.302 63.158 0.00 0.00 43.08 3.85
343 346 4.373771 GGTGACCGACCCAAAGTC 57.626 61.111 0.00 0.00 39.10 3.01
418 438 2.135933 GTTTGTTCTCTCACTCACGGG 58.864 52.381 0.00 0.00 0.00 5.28
419 439 2.540101 GTGTTTGTTCTCTCACTCACGG 59.460 50.000 0.00 0.00 0.00 4.94
450 480 7.458409 ACGAGTGAGAGGTTACAGTATTTTA 57.542 36.000 0.00 0.00 0.00 1.52
452 482 5.979288 ACGAGTGAGAGGTTACAGTATTT 57.021 39.130 0.00 0.00 0.00 1.40
455 485 6.093219 GTGAATACGAGTGAGAGGTTACAGTA 59.907 42.308 0.00 0.00 0.00 2.74
457 487 5.106277 TGTGAATACGAGTGAGAGGTTACAG 60.106 44.000 0.00 0.00 0.00 2.74
458 488 4.763279 TGTGAATACGAGTGAGAGGTTACA 59.237 41.667 0.00 0.00 0.00 2.41
459 489 5.094134 GTGTGAATACGAGTGAGAGGTTAC 58.906 45.833 0.00 0.00 0.00 2.50
460 490 4.763279 TGTGTGAATACGAGTGAGAGGTTA 59.237 41.667 0.00 0.00 0.00 2.85
461 491 3.572682 TGTGTGAATACGAGTGAGAGGTT 59.427 43.478 0.00 0.00 0.00 3.50
463 493 3.850122 TGTGTGAATACGAGTGAGAGG 57.150 47.619 0.00 0.00 0.00 3.69
473 4200 2.534939 GCGAGCGTGAATGTGTGAATAC 60.535 50.000 0.00 0.00 0.00 1.89
481 4208 2.434884 CCTGGCGAGCGTGAATGT 60.435 61.111 0.00 0.00 0.00 2.71
529 4256 3.530910 CTTCTGCGTTGGGGTCCGT 62.531 63.158 0.00 0.00 0.00 4.69
530 4257 2.742372 CTTCTGCGTTGGGGTCCG 60.742 66.667 0.00 0.00 0.00 4.79
531 4258 2.359975 CCTTCTGCGTTGGGGTCC 60.360 66.667 0.00 0.00 0.00 4.46
547 4288 0.108019 AGTGTGGTCCGGAGTTTTCC 59.892 55.000 3.06 1.83 40.33 3.13
572 4313 1.392168 GTGCATTGCATGTACGTACGT 59.608 47.619 25.98 25.98 41.91 3.57
573 4314 2.071604 GTGCATTGCATGTACGTACG 57.928 50.000 20.18 15.01 41.91 3.67
610 4351 0.975040 TTGGTGTGCAACTTTGGGCT 60.975 50.000 0.00 0.00 38.04 5.19
611 4352 0.530431 CTTGGTGTGCAACTTTGGGC 60.530 55.000 0.00 0.00 38.04 5.36
612 4353 1.110442 TCTTGGTGTGCAACTTTGGG 58.890 50.000 0.00 0.00 38.04 4.12
650 4391 7.301054 CGTAGAGTAGAGTAGAGTAGAGTAGC 58.699 46.154 0.00 0.00 0.00 3.58
682 4423 5.188434 AGTGAATGCGGTACTACTAGTGTA 58.812 41.667 5.39 3.47 0.00 2.90
683 4424 4.015084 AGTGAATGCGGTACTACTAGTGT 58.985 43.478 5.39 4.48 0.00 3.55
684 4425 4.095932 TGAGTGAATGCGGTACTACTAGTG 59.904 45.833 5.39 0.00 0.00 2.74
685 4426 4.096081 GTGAGTGAATGCGGTACTACTAGT 59.904 45.833 0.00 0.00 0.00 2.57
686 4427 4.095932 TGTGAGTGAATGCGGTACTACTAG 59.904 45.833 0.00 0.00 0.00 2.57
687 4428 4.011698 TGTGAGTGAATGCGGTACTACTA 58.988 43.478 0.00 0.00 0.00 1.82
693 4434 1.474879 TCGATGTGAGTGAATGCGGTA 59.525 47.619 0.00 0.00 0.00 4.02
704 4445 2.223805 TGGAATGATCGGTCGATGTGAG 60.224 50.000 10.77 0.00 34.60 3.51
708 4449 1.202521 TGGTGGAATGATCGGTCGATG 60.203 52.381 10.77 0.00 34.60 3.84
747 4504 2.550830 ACGCAGGAGCTATATTTGGG 57.449 50.000 0.00 0.00 39.10 4.12
762 4519 6.363088 CCCTTTTCGACGTTTATATATACGCA 59.637 38.462 21.00 6.97 41.24 5.24
765 4522 6.183360 CGCCCCTTTTCGACGTTTATATATAC 60.183 42.308 0.00 0.00 0.00 1.47
766 4523 5.863397 CGCCCCTTTTCGACGTTTATATATA 59.137 40.000 0.00 0.00 0.00 0.86
767 4524 4.687483 CGCCCCTTTTCGACGTTTATATAT 59.313 41.667 0.00 0.00 0.00 0.86
840 4600 2.604991 GAGATAGGGAGGGCGGGG 60.605 72.222 0.00 0.00 0.00 5.73
904 4668 0.698818 AGGAACCAAAAGAGCCCGAT 59.301 50.000 0.00 0.00 0.00 4.18
905 4669 0.036306 GAGGAACCAAAAGAGCCCGA 59.964 55.000 0.00 0.00 0.00 5.14
906 4670 0.036875 AGAGGAACCAAAAGAGCCCG 59.963 55.000 0.00 0.00 0.00 6.13
907 4671 2.294449 AAGAGGAACCAAAAGAGCCC 57.706 50.000 0.00 0.00 0.00 5.19
949 4713 3.317993 GCACAGAACCAAAAAGCTTAGGA 59.682 43.478 16.71 0.00 0.00 2.94
950 4714 3.642705 GCACAGAACCAAAAAGCTTAGG 58.357 45.455 0.00 5.10 0.00 2.69
951 4715 3.243068 ACGCACAGAACCAAAAAGCTTAG 60.243 43.478 0.00 0.00 0.00 2.18
977 4741 0.336737 TCTCCTCCTCCACTTCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
996 4760 0.249615 CGCTGGTCATGTCCATCGAT 60.250 55.000 24.59 0.00 45.94 3.59
997 4761 1.141665 CGCTGGTCATGTCCATCGA 59.858 57.895 24.59 0.00 45.94 3.59
998 4762 1.884464 CCGCTGGTCATGTCCATCG 60.884 63.158 22.76 22.76 43.73 3.84
1211 4975 0.387112 CGTGTTGCATGCGATTGGTT 60.387 50.000 11.68 0.00 0.00 3.67
1255 5019 1.825090 TGCAAGCAATGATCCGAACT 58.175 45.000 0.00 0.00 0.00 3.01
1261 5025 2.863401 TGAGCATGCAAGCAATGATC 57.137 45.000 21.98 6.11 36.85 2.92
1303 5067 2.347731 GCAGAGTAAAAAGGACCGGAG 58.652 52.381 9.46 0.00 0.00 4.63
1304 5068 1.337447 CGCAGAGTAAAAAGGACCGGA 60.337 52.381 9.46 0.00 0.00 5.14
1307 5071 6.335777 TCTAATACGCAGAGTAAAAAGGACC 58.664 40.000 0.00 0.00 39.04 4.46
1308 5072 7.823149 TTCTAATACGCAGAGTAAAAAGGAC 57.177 36.000 0.00 0.00 39.04 3.85
1309 5073 9.095065 GAATTCTAATACGCAGAGTAAAAAGGA 57.905 33.333 0.00 0.00 39.04 3.36
1310 5074 9.099454 AGAATTCTAATACGCAGAGTAAAAAGG 57.901 33.333 6.06 0.00 39.04 3.11
1342 5106 8.954350 GCGTTAGTTAGACTTGGATATATAGGA 58.046 37.037 0.00 0.00 0.00 2.94
1343 5107 8.958506 AGCGTTAGTTAGACTTGGATATATAGG 58.041 37.037 0.00 0.00 0.00 2.57
1346 5110 9.736414 TCTAGCGTTAGTTAGACTTGGATATAT 57.264 33.333 6.18 0.00 35.66 0.86
1347 5111 9.565090 TTCTAGCGTTAGTTAGACTTGGATATA 57.435 33.333 6.18 0.00 39.40 0.86
1348 5112 8.461249 TTCTAGCGTTAGTTAGACTTGGATAT 57.539 34.615 6.18 0.00 39.40 1.63
1350 5114 6.770746 TTCTAGCGTTAGTTAGACTTGGAT 57.229 37.500 6.18 0.00 39.40 3.41
1385 5152 4.890088 AGCTGTCGAACAAGGTTAACATA 58.110 39.130 8.10 0.00 0.00 2.29
1405 5181 1.444119 TTCCAACAACACCAGCGAGC 61.444 55.000 0.00 0.00 0.00 5.03
1421 5197 3.181465 TGTTGAGAGACACCAGAACTTCC 60.181 47.826 0.00 0.00 0.00 3.46
1422 5198 4.060038 TGTTGAGAGACACCAGAACTTC 57.940 45.455 0.00 0.00 0.00 3.01
1423 5199 4.487714 TTGTTGAGAGACACCAGAACTT 57.512 40.909 0.00 0.00 0.00 2.66
1428 5204 1.876156 GGCTTTGTTGAGAGACACCAG 59.124 52.381 0.00 0.00 0.00 4.00
1429 5205 1.490490 AGGCTTTGTTGAGAGACACCA 59.510 47.619 0.00 0.00 0.00 4.17
1430 5206 2.262423 AGGCTTTGTTGAGAGACACC 57.738 50.000 0.00 0.00 0.00 4.16
1451 5270 5.876612 AGATTCTGATCAAACACAAGCTC 57.123 39.130 0.00 0.00 34.60 4.09
1454 5273 6.742109 ACCAAAGATTCTGATCAAACACAAG 58.258 36.000 0.00 0.00 34.60 3.16
1476 5295 6.819146 CCTCCAATCTGTAGAAAAGTTAGACC 59.181 42.308 0.00 0.00 0.00 3.85
1488 5308 2.158856 TGCTGATGCCTCCAATCTGTAG 60.159 50.000 0.00 0.00 38.71 2.74
1583 5403 2.494918 GTGGCTGGCGTCGTAGAT 59.505 61.111 0.00 0.00 40.67 1.98
1681 5501 4.429212 CCGATGACGACGCCACCA 62.429 66.667 0.00 0.00 42.66 4.17
1689 5509 2.016393 GATGTCCAGCCCGATGACGA 62.016 60.000 0.00 0.00 42.66 4.20
1727 5547 4.314440 GAGGCCGGTGCAGTGTGA 62.314 66.667 1.90 0.00 40.13 3.58
1774 5594 2.656646 CACAGCGAGTACTGGCCA 59.343 61.111 24.24 4.71 42.21 5.36
1874 5697 1.386533 CCAGAGATGGACATGTTGGC 58.613 55.000 0.00 0.00 0.00 4.52
1935 5758 3.873883 GGATCGCCGACGTCGACT 61.874 66.667 37.65 18.86 43.02 4.18
2032 5867 2.182030 GACGTCCTCTGCCCGAAG 59.818 66.667 3.51 0.00 0.00 3.79
2068 5903 0.877743 GCAAGAGCAAGACCAACCTC 59.122 55.000 0.00 0.00 41.58 3.85
2102 5938 1.196581 TCCATGAACGTGCAAACGATG 59.803 47.619 0.00 0.00 36.85 3.84
2103 5939 1.518325 TCCATGAACGTGCAAACGAT 58.482 45.000 0.00 0.00 36.85 3.73
2104 5940 1.518325 ATCCATGAACGTGCAAACGA 58.482 45.000 0.00 0.00 36.85 3.85
2105 5941 2.241722 GAATCCATGAACGTGCAAACG 58.758 47.619 0.00 0.00 39.31 3.60
2106 5942 3.281341 TGAATCCATGAACGTGCAAAC 57.719 42.857 0.00 0.00 0.00 2.93
2107 5943 3.856638 GCTTGAATCCATGAACGTGCAAA 60.857 43.478 0.00 0.00 0.00 3.68
2112 5959 2.489329 CCAAGCTTGAATCCATGAACGT 59.511 45.455 28.05 0.00 0.00 3.99
2127 5974 0.884704 ATCAACGCACGAACCAAGCT 60.885 50.000 0.00 0.00 0.00 3.74
2130 5977 0.233590 CGAATCAACGCACGAACCAA 59.766 50.000 0.00 0.00 0.00 3.67
2249 6096 3.751175 TGTTTGTGGTTCTTGATCCGATC 59.249 43.478 1.01 1.01 0.00 3.69
2253 6100 4.853924 ATGTGTTTGTGGTTCTTGATCC 57.146 40.909 0.00 0.00 0.00 3.36
2270 6117 4.911610 CGAAGTTACAAAGGCAGAAATGTG 59.088 41.667 0.00 0.00 0.00 3.21
2347 6219 3.129988 GCTTACCTAGGTAAACTGCTCGA 59.870 47.826 29.71 9.45 39.69 4.04
2348 6220 3.445857 GCTTACCTAGGTAAACTGCTCG 58.554 50.000 29.71 19.16 39.69 5.03
2349 6221 3.197116 TGGCTTACCTAGGTAAACTGCTC 59.803 47.826 29.71 22.20 39.69 4.26
2350 6222 3.178865 TGGCTTACCTAGGTAAACTGCT 58.821 45.455 29.71 2.77 39.69 4.24
2379 6251 2.907042 CACTGGAGAAGTTAAGGAGGGT 59.093 50.000 0.00 0.00 36.83 4.34
2382 6254 3.835395 AGACCACTGGAGAAGTTAAGGAG 59.165 47.826 0.71 0.00 36.83 3.69
2420 6315 2.165030 GCTCAAACCCAACCATGATCAG 59.835 50.000 0.09 0.00 0.00 2.90
2423 6318 2.610438 AGCTCAAACCCAACCATGAT 57.390 45.000 0.00 0.00 0.00 2.45
2425 6320 2.364970 TCAAAGCTCAAACCCAACCATG 59.635 45.455 0.00 0.00 0.00 3.66
2426 6321 2.676748 TCAAAGCTCAAACCCAACCAT 58.323 42.857 0.00 0.00 0.00 3.55
2427 6322 2.151502 TCAAAGCTCAAACCCAACCA 57.848 45.000 0.00 0.00 0.00 3.67
2428 6323 2.224042 CCTTCAAAGCTCAAACCCAACC 60.224 50.000 0.00 0.00 0.00 3.77
2430 6325 2.430332 CACCTTCAAAGCTCAAACCCAA 59.570 45.455 0.00 0.00 0.00 4.12
2433 6328 1.269778 GCCACCTTCAAAGCTCAAACC 60.270 52.381 0.00 0.00 0.00 3.27
2434 6329 1.683385 AGCCACCTTCAAAGCTCAAAC 59.317 47.619 0.00 0.00 0.00 2.93
2435 6330 2.071778 AGCCACCTTCAAAGCTCAAA 57.928 45.000 0.00 0.00 0.00 2.69
2436 6331 2.949177 TAGCCACCTTCAAAGCTCAA 57.051 45.000 0.00 0.00 36.79 3.02
2437 6332 2.305635 TCATAGCCACCTTCAAAGCTCA 59.694 45.455 0.00 0.00 36.79 4.26
2438 6333 2.680339 GTCATAGCCACCTTCAAAGCTC 59.320 50.000 0.00 0.00 36.79 4.09
2439 6334 2.040278 TGTCATAGCCACCTTCAAAGCT 59.960 45.455 0.00 0.00 39.37 3.74
2440 6335 2.436417 TGTCATAGCCACCTTCAAAGC 58.564 47.619 0.00 0.00 0.00 3.51
2441 6336 3.441572 CCTTGTCATAGCCACCTTCAAAG 59.558 47.826 0.00 0.00 0.00 2.77
2453 6361 2.103941 GGCCTTCTCCTCCTTGTCATAG 59.896 54.545 0.00 0.00 0.00 2.23
2489 6397 4.451150 TACTTGAGCGCGGCCAGG 62.451 66.667 8.83 4.88 0.00 4.45
2495 6403 2.509336 CCCCAGTACTTGAGCGCG 60.509 66.667 0.00 0.00 0.00 6.86
2513 6421 0.253610 AATTTATGTGGGTCGCCGGA 59.746 50.000 5.05 0.00 0.00 5.14
2516 6424 1.407618 GGGAAATTTATGTGGGTCGCC 59.592 52.381 0.00 0.00 0.00 5.54
2517 6425 1.064952 CGGGAAATTTATGTGGGTCGC 59.935 52.381 0.00 0.00 0.00 5.19
2522 6430 3.272581 ACGTACCGGGAAATTTATGTGG 58.727 45.455 6.32 0.00 0.00 4.17
2550 6458 2.289010 CCCTGGGCTTTTAACAGCAAAG 60.289 50.000 15.17 10.87 42.10 2.77
2552 6460 1.337118 CCCTGGGCTTTTAACAGCAA 58.663 50.000 15.17 2.48 42.10 3.91
2555 6463 2.102578 CATCCCCTGGGCTTTTAACAG 58.897 52.381 7.39 0.00 34.68 3.16
2556 6464 1.431243 ACATCCCCTGGGCTTTTAACA 59.569 47.619 7.39 0.00 34.68 2.41
2557 6465 1.824852 CACATCCCCTGGGCTTTTAAC 59.175 52.381 7.39 0.00 34.68 2.01
2558 6466 1.272985 CCACATCCCCTGGGCTTTTAA 60.273 52.381 7.39 0.00 34.68 1.52
2559 6467 0.334676 CCACATCCCCTGGGCTTTTA 59.665 55.000 7.39 0.00 34.68 1.52
2560 6468 1.079073 CCACATCCCCTGGGCTTTT 59.921 57.895 7.39 0.00 34.68 2.27
2561 6469 2.169810 ACCACATCCCCTGGGCTTT 61.170 57.895 7.39 0.00 32.45 3.51
2572 6506 1.077716 GGCCCCTACACACCACATC 60.078 63.158 0.00 0.00 0.00 3.06
2591 6535 1.612463 CCATGGTACTACGACTAGGCC 59.388 57.143 2.57 0.00 0.00 5.19
2593 6537 4.395625 TGATCCATGGTACTACGACTAGG 58.604 47.826 12.58 0.00 0.00 3.02
2594 6538 6.349445 GGAATGATCCATGGTACTACGACTAG 60.349 46.154 12.58 0.00 45.79 2.57
2595 6539 5.475909 GGAATGATCCATGGTACTACGACTA 59.524 44.000 12.58 0.00 45.79 2.59
2596 6540 4.281182 GGAATGATCCATGGTACTACGACT 59.719 45.833 12.58 0.00 45.79 4.18
2597 6541 4.557205 GGAATGATCCATGGTACTACGAC 58.443 47.826 12.58 0.00 45.79 4.34
2598 6542 4.866508 GGAATGATCCATGGTACTACGA 57.133 45.455 12.58 0.00 45.79 3.43
2623 6567 7.654022 TTAATCAATAGCAAGTTAAAGGGGG 57.346 36.000 0.00 0.00 0.00 5.40
2626 6570 9.573133 CCACTTTAATCAATAGCAAGTTAAAGG 57.427 33.333 15.91 8.18 42.39 3.11
2639 6588 9.379791 GCTGTAGTACTAACCACTTTAATCAAT 57.620 33.333 3.61 0.00 0.00 2.57
2640 6589 8.369424 TGCTGTAGTACTAACCACTTTAATCAA 58.631 33.333 3.61 0.00 0.00 2.57
2649 6598 5.326200 ACATCTGCTGTAGTACTAACCAC 57.674 43.478 3.61 0.00 35.91 4.16
2650 6599 5.995565 AACATCTGCTGTAGTACTAACCA 57.004 39.130 3.61 0.00 36.98 3.67
2651 6600 6.872020 TCAAAACATCTGCTGTAGTACTAACC 59.128 38.462 3.61 0.00 36.98 2.85
2652 6601 7.884816 TCAAAACATCTGCTGTAGTACTAAC 57.115 36.000 3.61 0.09 36.98 2.34
2653 6602 8.935844 CATTCAAAACATCTGCTGTAGTACTAA 58.064 33.333 3.61 0.00 36.98 2.24
2659 6615 6.370994 AGAGACATTCAAAACATCTGCTGTAG 59.629 38.462 0.00 0.00 36.98 2.74
2675 6631 4.639310 AGCACATCCATCAAAGAGACATTC 59.361 41.667 0.00 0.00 0.00 2.67
2681 6637 2.022195 CCCAGCACATCCATCAAAGAG 58.978 52.381 0.00 0.00 0.00 2.85
2684 6640 2.307496 AACCCAGCACATCCATCAAA 57.693 45.000 0.00 0.00 0.00 2.69
2795 6759 2.068834 TACTACTGGAGGCTACTGGC 57.931 55.000 8.60 0.00 40.90 4.85
2807 6771 6.881602 AGGAAGCCAAGAAAGAATTACTACTG 59.118 38.462 0.00 0.00 0.00 2.74
2808 6772 6.881602 CAGGAAGCCAAGAAAGAATTACTACT 59.118 38.462 0.00 0.00 0.00 2.57
2809 6773 6.655425 ACAGGAAGCCAAGAAAGAATTACTAC 59.345 38.462 0.00 0.00 0.00 2.73
2816 6780 5.675684 AAAAACAGGAAGCCAAGAAAGAA 57.324 34.783 0.00 0.00 0.00 2.52
2818 6782 6.986250 AGATAAAAACAGGAAGCCAAGAAAG 58.014 36.000 0.00 0.00 0.00 2.62
2839 6803 8.110908 ACTGTAGTTAAACACTCCTAGAGAGAT 58.889 37.037 13.28 1.36 46.50 2.75
2848 6812 3.497262 GGTGCACTGTAGTTAAACACTCC 59.503 47.826 17.98 0.00 36.88 3.85
2851 6815 4.513692 TGATGGTGCACTGTAGTTAAACAC 59.486 41.667 17.98 0.00 0.00 3.32
2854 6818 4.754618 CACTGATGGTGCACTGTAGTTAAA 59.245 41.667 17.98 0.00 39.22 1.52
2855 6819 4.039852 TCACTGATGGTGCACTGTAGTTAA 59.960 41.667 17.98 4.74 44.98 2.01
2856 6820 3.576550 TCACTGATGGTGCACTGTAGTTA 59.423 43.478 17.98 5.49 44.98 2.24
2857 6821 2.368548 TCACTGATGGTGCACTGTAGTT 59.631 45.455 17.98 0.00 44.98 2.24
2858 6822 1.970640 TCACTGATGGTGCACTGTAGT 59.029 47.619 17.98 12.90 44.98 2.73
2859 6823 2.749280 TCACTGATGGTGCACTGTAG 57.251 50.000 17.98 12.28 44.98 2.74
2860 6824 2.976589 CATCACTGATGGTGCACTGTA 58.023 47.619 17.98 4.06 44.98 2.74
2861 6825 1.817357 CATCACTGATGGTGCACTGT 58.183 50.000 17.98 5.44 44.98 3.55
2891 6857 5.560966 AGTTCTTGGCAACGGTAATAATG 57.439 39.130 0.00 0.00 42.51 1.90
2901 6870 5.143376 TGGTAGTAGTAGTTCTTGGCAAC 57.857 43.478 0.00 0.00 0.00 4.17
2946 6933 7.255242 CCATGGTTTTGTTCCAGTATATGCTAG 60.255 40.741 2.57 0.00 38.42 3.42
2995 7041 6.091441 ACGAGAAATTTTGTCTCTAGTGATGC 59.909 38.462 4.95 0.00 39.56 3.91
3044 7090 4.092821 CACATGTATACGTGAAAGTGTGGG 59.907 45.833 27.85 1.70 36.72 4.61
3045 7091 4.435518 GCACATGTATACGTGAAAGTGTGG 60.436 45.833 27.85 9.91 36.96 4.17
3057 7103 4.644685 ACCCTTTTGGATGCACATGTATAC 59.355 41.667 0.00 0.00 44.07 1.47
3058 7104 4.644234 CACCCTTTTGGATGCACATGTATA 59.356 41.667 0.00 0.00 44.07 1.47
3227 7273 2.506957 GCTGGTTTTGGGGTGGTGG 61.507 63.158 0.00 0.00 0.00 4.61
3242 7288 3.282021 AGTAGAGCTGAGAAGAGAGCTG 58.718 50.000 0.00 0.00 45.72 4.24
3285 7643 2.028567 TGTCTGTGTGTGACTTGTGACA 60.029 45.455 0.00 0.00 35.63 3.58
3308 7666 1.651132 CGTGTGTGTTTCTGCGTGC 60.651 57.895 0.00 0.00 0.00 5.34
3487 7851 1.132436 CCATGTGCGCGTGTACAAG 59.868 57.895 23.35 18.56 44.07 3.16
3488 7852 1.160946 AACCATGTGCGCGTGTACAA 61.161 50.000 23.35 7.78 44.07 2.41
3490 7854 0.791422 TTAACCATGTGCGCGTGTAC 59.209 50.000 17.79 10.48 0.00 2.90
3492 7856 0.878416 AATTAACCATGTGCGCGTGT 59.122 45.000 17.79 3.41 0.00 4.49
3493 7857 1.135831 TGAATTAACCATGTGCGCGTG 60.136 47.619 12.66 12.66 0.00 5.34
3494 7858 1.135803 GTGAATTAACCATGTGCGCGT 60.136 47.619 8.43 0.00 0.00 6.01
3495 7859 1.130373 AGTGAATTAACCATGTGCGCG 59.870 47.619 0.00 0.00 0.00 6.86
3496 7860 2.477863 GGAGTGAATTAACCATGTGCGC 60.478 50.000 0.00 0.00 0.00 6.09
3497 7861 2.746904 TGGAGTGAATTAACCATGTGCG 59.253 45.455 0.00 0.00 0.00 5.34
3498 7862 4.218417 ACTTGGAGTGAATTAACCATGTGC 59.782 41.667 0.00 0.00 38.64 4.57
3499 7863 5.964958 ACTTGGAGTGAATTAACCATGTG 57.035 39.130 0.00 0.00 38.64 3.21
3500 7864 5.476945 GGAACTTGGAGTGAATTAACCATGT 59.523 40.000 0.00 0.00 40.67 3.21
3502 7866 5.640147 TGGAACTTGGAGTGAATTAACCAT 58.360 37.500 0.00 0.00 32.31 3.55
3505 7869 6.486993 AGACTTGGAACTTGGAGTGAATTAAC 59.513 38.462 0.00 0.00 0.00 2.01
3506 7870 6.601332 AGACTTGGAACTTGGAGTGAATTAA 58.399 36.000 0.00 0.00 0.00 1.40
3507 7871 6.187727 AGACTTGGAACTTGGAGTGAATTA 57.812 37.500 0.00 0.00 0.00 1.40
3508 7872 5.053978 AGACTTGGAACTTGGAGTGAATT 57.946 39.130 0.00 0.00 0.00 2.17
3509 7873 4.713792 AGACTTGGAACTTGGAGTGAAT 57.286 40.909 0.00 0.00 0.00 2.57
3540 7904 5.865085 ACAGTTAGATTAGCAACAGTTGGA 58.135 37.500 15.28 0.00 0.00 3.53
3609 7973 2.169352 ACATGAGACATCTACTGCCACC 59.831 50.000 0.00 0.00 0.00 4.61
3610 7974 3.131933 AGACATGAGACATCTACTGCCAC 59.868 47.826 0.00 0.00 0.00 5.01
4073 8480 1.409064 TGCTACGCTAATCTCACTGGG 59.591 52.381 0.00 0.00 0.00 4.45
4075 8482 2.112522 CGTGCTACGCTAATCTCACTG 58.887 52.381 0.00 0.00 33.65 3.66
4122 8531 3.308035 TGTTGCCCTAGCTAGCTAGTA 57.692 47.619 37.50 25.51 43.22 1.82
4123 8532 2.160721 TGTTGCCCTAGCTAGCTAGT 57.839 50.000 37.50 14.62 43.22 2.57
4124 8533 2.869636 GCATGTTGCCCTAGCTAGCTAG 60.870 54.545 35.39 35.39 38.71 3.42
4172 8581 1.477558 CCCCCGCAAGCTTTATCATCT 60.478 52.381 0.00 0.00 0.00 2.90
4236 8645 1.129879 GCAACGAACATGCATCGCAG 61.130 55.000 18.29 12.98 43.65 5.18
4248 8662 2.642129 CGCCAACCATGCAACGAA 59.358 55.556 0.00 0.00 0.00 3.85
4407 8823 2.094854 CACGTCCCAGGTTCAGTAGTAC 60.095 54.545 0.00 0.00 0.00 2.73
4547 8973 0.796927 TACGACAGAGACAGCACTCG 59.203 55.000 0.00 0.00 41.25 4.18
4600 9026 2.054363 CTCTAACATCGGTATGCTGCG 58.946 52.381 0.00 0.00 36.50 5.18
4617 9043 3.314331 CCGGTCACTGCCACCTCT 61.314 66.667 0.00 0.00 0.00 3.69
4618 9044 4.394712 CCCGGTCACTGCCACCTC 62.395 72.222 0.00 0.00 0.00 3.85
4642 9069 2.255252 GTACGTACGCACCGTGGT 59.745 61.111 16.72 0.00 41.39 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.