Multiple sequence alignment - TraesCS4A01G011500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G011500 chr4A 100.000 2429 0 0 1 2429 6481516 6483944 0.000000e+00 4486.0
1 TraesCS4A01G011500 chr4A 97.114 1802 42 8 1 1801 6475491 6477283 0.000000e+00 3031.0
2 TraesCS4A01G011500 chr4A 96.688 936 21 2 1 928 6451133 6452066 0.000000e+00 1548.0
3 TraesCS4A01G011500 chr4A 80.488 82 16 0 3 84 718245227 718245308 2.020000e-06 63.9
4 TraesCS4A01G011500 chr4D 93.058 1282 68 7 163 1429 462501802 462503077 0.000000e+00 1855.0
5 TraesCS4A01G011500 chr4D 88.899 1117 92 15 704 1798 462497945 462499051 0.000000e+00 1347.0
6 TraesCS4A01G011500 chr4D 86.268 1187 121 23 553 1714 462548716 462549885 0.000000e+00 1251.0
7 TraesCS4A01G011500 chr4D 86.400 250 22 8 1817 2055 167873204 167872956 1.850000e-66 263.0
8 TraesCS4A01G011500 chr4D 95.122 123 6 0 1 123 462501676 462501798 6.850000e-46 195.0
9 TraesCS4A01G011500 chr4D 97.143 70 2 0 1732 1801 462524960 462525029 4.240000e-23 119.0
10 TraesCS4A01G011500 chr4B 91.238 1107 84 7 703 1801 578451997 578450896 0.000000e+00 1495.0
11 TraesCS4A01G011500 chr4B 91.238 1107 84 7 703 1801 578462444 578461343 0.000000e+00 1495.0
12 TraesCS4A01G011500 chr4B 91.147 1107 85 7 703 1801 578373409 578372308 0.000000e+00 1489.0
13 TraesCS4A01G011500 chr4B 90.967 1107 82 8 703 1801 578497483 578496387 0.000000e+00 1474.0
14 TraesCS4A01G011500 chr4B 90.984 1098 71 9 703 1798 578382173 578381102 0.000000e+00 1454.0
15 TraesCS4A01G011500 chr4B 87.923 1242 114 18 582 1798 578532580 578531350 0.000000e+00 1430.0
16 TraesCS4A01G011500 chr4B 93.750 896 54 2 703 1596 578515773 578514878 0.000000e+00 1343.0
17 TraesCS4A01G011500 chr4B 88.000 225 15 5 353 567 578351166 578350944 3.100000e-64 255.0
18 TraesCS4A01G011500 chr4B 88.000 225 15 5 353 567 578408719 578408497 3.100000e-64 255.0
19 TraesCS4A01G011500 chr4B 88.000 225 15 5 353 567 578435338 578435116 3.100000e-64 255.0
20 TraesCS4A01G011500 chr4B 87.556 225 16 5 353 567 578480978 578480756 1.440000e-62 250.0
21 TraesCS4A01G011500 chr4B 88.636 88 4 1 2342 2429 578496348 578496267 4.270000e-18 102.0
22 TraesCS4A01G011500 chr4B 87.500 88 5 4 2342 2429 578372269 578372188 1.990000e-16 97.1
23 TraesCS4A01G011500 chr4B 87.500 88 5 1 2342 2429 578450857 578450776 1.990000e-16 97.1
24 TraesCS4A01G011500 chr4B 87.500 88 5 1 2342 2429 578461304 578461223 1.990000e-16 97.1
25 TraesCS4A01G011500 chr3B 89.883 257 19 1 1800 2049 253893427 253893171 8.380000e-85 324.0
26 TraesCS4A01G011500 chr5A 88.123 261 26 4 2088 2343 697753450 697753190 3.030000e-79 305.0
27 TraesCS4A01G011500 chr5A 87.454 271 20 4 1793 2049 34841897 34842167 1.410000e-77 300.0
28 TraesCS4A01G011500 chr5A 87.692 260 27 3 2088 2343 650555655 650555913 5.080000e-77 298.0
29 TraesCS4A01G011500 chr5A 93.443 183 12 0 1 183 182711280 182711098 3.080000e-69 272.0
30 TraesCS4A01G011500 chr5A 84.015 269 30 5 1792 2049 699319366 699319632 1.870000e-61 246.0
31 TraesCS4A01G011500 chr5A 83.704 270 30 4 1795 2052 552951298 552951565 2.410000e-60 243.0
32 TraesCS4A01G011500 chr3A 88.627 255 24 3 2088 2337 79450840 79450586 3.030000e-79 305.0
33 TraesCS4A01G011500 chr3A 87.405 262 28 4 2087 2343 522717636 522717897 1.830000e-76 296.0
34 TraesCS4A01G011500 chr3A 84.672 274 29 6 1799 2061 525169810 525170081 6.660000e-66 261.0
35 TraesCS4A01G011500 chr3A 85.496 262 21 4 1800 2050 592115082 592115337 8.620000e-65 257.0
36 TraesCS4A01G011500 chr3A 84.791 263 22 5 1800 2050 592179824 592180080 5.190000e-62 248.0
37 TraesCS4A01G011500 chr2B 87.833 263 28 2 2085 2343 529338530 529338792 3.030000e-79 305.0
38 TraesCS4A01G011500 chr2B 87.356 261 29 3 2087 2343 181515369 181515109 1.830000e-76 296.0
39 TraesCS4A01G011500 chr1A 87.833 263 27 4 2086 2343 62255711 62255973 1.090000e-78 303.0
40 TraesCS4A01G011500 chr1A 87.739 261 27 2 2088 2343 451735714 451735974 1.410000e-77 300.0
41 TraesCS4A01G011500 chr7B 88.672 256 16 3 1805 2047 574415160 574415415 1.410000e-77 300.0
42 TraesCS4A01G011500 chr6B 87.739 261 27 3 2088 2343 455461042 455461302 1.410000e-77 300.0
43 TraesCS4A01G011500 chr6B 87.313 268 22 4 1800 2055 4953242 4952975 1.830000e-76 296.0
44 TraesCS4A01G011500 chr6B 87.313 268 22 4 1800 2055 4975624 4975357 1.830000e-76 296.0
45 TraesCS4A01G011500 chr6B 83.740 123 18 2 50 171 457553254 457553375 5.490000e-22 115.0
46 TraesCS4A01G011500 chr1B 87.023 262 22 3 1800 2049 625208692 625208431 3.950000e-73 285.0
47 TraesCS4A01G011500 chr1D 85.357 280 28 4 1782 2049 76970934 76971212 6.610000e-71 278.0
48 TraesCS4A01G011500 chr1D 85.985 264 27 4 1800 2053 365323730 365323993 8.560000e-70 274.0
49 TraesCS4A01G011500 chr5B 84.561 285 32 4 1799 2072 415650865 415650582 3.080000e-69 272.0
50 TraesCS4A01G011500 chr7A 94.286 175 10 0 2 176 139636233 139636059 3.980000e-68 268.0
51 TraesCS4A01G011500 chr2D 84.980 253 29 3 1809 2053 596908477 596908226 5.190000e-62 248.0
52 TraesCS4A01G011500 chr7D 82.645 121 19 2 50 169 550799033 550798914 3.300000e-19 106.0
53 TraesCS4A01G011500 chr7D 84.270 89 12 2 3 90 24957733 24957820 4.300000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G011500 chr4A 6481516 6483944 2428 False 4486.000000 4486 100.000000 1 2429 1 chr4A.!!$F3 2428
1 TraesCS4A01G011500 chr4A 6475491 6477283 1792 False 3031.000000 3031 97.114000 1 1801 1 chr4A.!!$F2 1800
2 TraesCS4A01G011500 chr4A 6451133 6452066 933 False 1548.000000 1548 96.688000 1 928 1 chr4A.!!$F1 927
3 TraesCS4A01G011500 chr4D 462548716 462549885 1169 False 1251.000000 1251 86.268000 553 1714 1 chr4D.!!$F2 1161
4 TraesCS4A01G011500 chr4D 462497945 462503077 5132 False 1132.333333 1855 92.359667 1 1798 3 chr4D.!!$F3 1797
5 TraesCS4A01G011500 chr4B 578381102 578382173 1071 True 1454.000000 1454 90.984000 703 1798 1 chr4B.!!$R2 1095
6 TraesCS4A01G011500 chr4B 578531350 578532580 1230 True 1430.000000 1430 87.923000 582 1798 1 chr4B.!!$R7 1216
7 TraesCS4A01G011500 chr4B 578514878 578515773 895 True 1343.000000 1343 93.750000 703 1596 1 chr4B.!!$R6 893
8 TraesCS4A01G011500 chr4B 578450776 578451997 1221 True 796.050000 1495 89.369000 703 2429 2 chr4B.!!$R9 1726
9 TraesCS4A01G011500 chr4B 578461223 578462444 1221 True 796.050000 1495 89.369000 703 2429 2 chr4B.!!$R10 1726
10 TraesCS4A01G011500 chr4B 578372188 578373409 1221 True 793.050000 1489 89.323500 703 2429 2 chr4B.!!$R8 1726
11 TraesCS4A01G011500 chr4B 578496267 578497483 1216 True 788.000000 1474 89.801500 703 2429 2 chr4B.!!$R11 1726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 966 0.907704 ATACGTGGTCAGGGCCTCAA 60.908 55.0 0.95 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 4255 0.035739 TCGGACCTACCTTTTGTGCC 59.964 55.0 0.0 0.0 36.31 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.147595 CGAGGGGCGGTGATGAGA 61.148 66.667 0.00 0.00 36.03 3.27
112 113 4.072131 GCATCCTCTGTCTTGTGGTTTTA 58.928 43.478 0.00 0.00 0.00 1.52
221 222 2.662637 TGGTTATTCGTACGAAACTGCG 59.337 45.455 32.12 0.00 37.69 5.18
236 237 2.594592 GCGTGTGGCAAGAAGGGT 60.595 61.111 0.00 0.00 42.87 4.34
245 246 4.288626 TGTGGCAAGAAGGGTATAGAAAGT 59.711 41.667 0.00 0.00 0.00 2.66
641 651 3.187022 CGTTGATGATGTGACATGTGTGT 59.813 43.478 1.15 0.00 42.49 3.72
932 966 0.907704 ATACGTGGTCAGGGCCTCAA 60.908 55.000 0.95 0.00 0.00 3.02
1098 1143 5.867174 CGACCTTTTGGAGAAAAACAACTTT 59.133 36.000 0.00 0.00 44.07 2.66
1113 1158 2.363276 TTTCCGCGGGCTCTCCTA 60.363 61.111 27.83 0.00 0.00 2.94
1152 1200 4.740822 GTGAACCATGGGGGCGCT 62.741 66.667 18.09 0.00 42.05 5.92
1272 1320 2.367567 GCCCGGATCCATAACTCAACTA 59.632 50.000 13.41 0.00 0.00 2.24
1474 1529 6.667370 CATGCACGCCTTTCATATAATGTAA 58.333 36.000 0.00 0.00 0.00 2.41
1479 1534 8.883731 GCACGCCTTTCATATAATGTAATATCT 58.116 33.333 0.00 0.00 0.00 1.98
1619 1680 7.433131 ACAATTATTTATTGCGAGATGTTGCAG 59.567 33.333 4.76 0.00 46.21 4.41
1728 1793 4.655649 ACATAGCATGACATCTAAGGGTGA 59.344 41.667 0.00 0.00 0.00 4.02
1801 1866 7.865706 AATCAACTCAATCCTAATGTGGTAC 57.134 36.000 0.00 0.00 0.00 3.34
1802 1867 6.620877 TCAACTCAATCCTAATGTGGTACT 57.379 37.500 0.00 0.00 0.00 2.73
1803 1868 6.640518 TCAACTCAATCCTAATGTGGTACTC 58.359 40.000 0.00 0.00 0.00 2.59
1804 1869 5.615925 ACTCAATCCTAATGTGGTACTCC 57.384 43.478 0.00 0.00 0.00 3.85
1805 1870 4.409247 ACTCAATCCTAATGTGGTACTCCC 59.591 45.833 0.00 0.00 0.00 4.30
1806 1871 4.631234 TCAATCCTAATGTGGTACTCCCT 58.369 43.478 0.00 0.00 0.00 4.20
1807 1872 5.036916 TCAATCCTAATGTGGTACTCCCTT 58.963 41.667 0.00 0.00 0.00 3.95
1808 1873 5.130477 TCAATCCTAATGTGGTACTCCCTTC 59.870 44.000 0.00 0.00 0.00 3.46
1809 1874 4.069312 TCCTAATGTGGTACTCCCTTCA 57.931 45.455 0.00 0.00 0.00 3.02
1810 1875 4.631234 TCCTAATGTGGTACTCCCTTCAT 58.369 43.478 0.00 0.00 32.64 2.57
1811 1876 5.784023 TCCTAATGTGGTACTCCCTTCATA 58.216 41.667 0.00 0.00 31.64 2.15
1812 1877 6.390504 TCCTAATGTGGTACTCCCTTCATAT 58.609 40.000 0.00 0.00 31.64 1.78
1813 1878 6.497259 TCCTAATGTGGTACTCCCTTCATATC 59.503 42.308 0.00 0.00 31.64 1.63
1814 1879 6.498651 CCTAATGTGGTACTCCCTTCATATCT 59.501 42.308 0.00 0.00 31.64 1.98
1815 1880 6.426646 AATGTGGTACTCCCTTCATATCTC 57.573 41.667 0.00 0.00 31.64 2.75
1816 1881 5.144159 TGTGGTACTCCCTTCATATCTCT 57.856 43.478 0.00 0.00 0.00 3.10
1817 1882 5.529289 TGTGGTACTCCCTTCATATCTCTT 58.471 41.667 0.00 0.00 0.00 2.85
1818 1883 5.964477 TGTGGTACTCCCTTCATATCTCTTT 59.036 40.000 0.00 0.00 0.00 2.52
1819 1884 6.443849 TGTGGTACTCCCTTCATATCTCTTTT 59.556 38.462 0.00 0.00 0.00 2.27
1820 1885 6.763610 GTGGTACTCCCTTCATATCTCTTTTG 59.236 42.308 0.00 0.00 0.00 2.44
1821 1886 6.443849 TGGTACTCCCTTCATATCTCTTTTGT 59.556 38.462 0.00 0.00 0.00 2.83
1822 1887 6.987404 GGTACTCCCTTCATATCTCTTTTGTC 59.013 42.308 0.00 0.00 0.00 3.18
1823 1888 6.882768 ACTCCCTTCATATCTCTTTTGTCT 57.117 37.500 0.00 0.00 0.00 3.41
1824 1889 6.648192 ACTCCCTTCATATCTCTTTTGTCTG 58.352 40.000 0.00 0.00 0.00 3.51
1825 1890 5.431765 TCCCTTCATATCTCTTTTGTCTGC 58.568 41.667 0.00 0.00 0.00 4.26
1826 1891 5.045651 TCCCTTCATATCTCTTTTGTCTGCA 60.046 40.000 0.00 0.00 0.00 4.41
1827 1892 5.826737 CCCTTCATATCTCTTTTGTCTGCAT 59.173 40.000 0.00 0.00 0.00 3.96
1828 1893 6.994496 CCCTTCATATCTCTTTTGTCTGCATA 59.006 38.462 0.00 0.00 0.00 3.14
1829 1894 7.664731 CCCTTCATATCTCTTTTGTCTGCATAT 59.335 37.037 0.00 0.00 0.00 1.78
1830 1895 8.719648 CCTTCATATCTCTTTTGTCTGCATATC 58.280 37.037 0.00 0.00 0.00 1.63
1831 1896 9.269453 CTTCATATCTCTTTTGTCTGCATATCA 57.731 33.333 0.00 0.00 0.00 2.15
1832 1897 8.828688 TCATATCTCTTTTGTCTGCATATCAG 57.171 34.615 0.00 0.00 44.21 2.90
1844 1909 6.688637 TCTGCATATCAGATTTGGTCAAAG 57.311 37.500 3.34 0.00 46.34 2.77
1845 1910 6.182627 TCTGCATATCAGATTTGGTCAAAGT 58.817 36.000 3.34 0.00 46.34 2.66
1846 1911 6.317140 TCTGCATATCAGATTTGGTCAAAGTC 59.683 38.462 3.34 1.51 46.34 3.01
1847 1912 5.945191 TGCATATCAGATTTGGTCAAAGTCA 59.055 36.000 3.34 0.00 33.32 3.41
1848 1913 6.433716 TGCATATCAGATTTGGTCAAAGTCAA 59.566 34.615 3.34 0.00 33.32 3.18
1849 1914 7.039853 TGCATATCAGATTTGGTCAAAGTCAAA 60.040 33.333 3.34 0.00 37.29 2.69
1850 1915 7.274250 GCATATCAGATTTGGTCAAAGTCAAAC 59.726 37.037 3.34 0.00 35.97 2.93
1851 1916 6.966534 ATCAGATTTGGTCAAAGTCAAACT 57.033 33.333 2.55 0.00 35.97 2.66
1852 1917 6.773976 TCAGATTTGGTCAAAGTCAAACTT 57.226 33.333 2.55 0.00 40.80 2.66
1864 1929 5.975693 AAGTCAAACTTTGTCAACCTTGA 57.024 34.783 1.44 0.00 34.11 3.02
1865 1930 5.709966 AAGTCAAACTTTGTCAACCTTGAC 58.290 37.500 17.85 17.85 42.14 3.18
1931 1996 9.571810 TCAATATTGTTAGATGCAACATGAAAC 57.428 29.630 14.97 0.00 38.18 2.78
1932 1997 9.577110 CAATATTGTTAGATGCAACATGAAACT 57.423 29.630 7.32 0.00 38.18 2.66
1935 2000 8.970691 ATTGTTAGATGCAACATGAAACTAAC 57.029 30.769 0.00 10.13 38.18 2.34
1936 2001 7.744087 TGTTAGATGCAACATGAAACTAACT 57.256 32.000 15.39 0.00 38.96 2.24
1937 2002 8.165239 TGTTAGATGCAACATGAAACTAACTT 57.835 30.769 15.39 0.00 38.96 2.66
1938 2003 8.629158 TGTTAGATGCAACATGAAACTAACTTT 58.371 29.630 15.39 0.00 38.96 2.66
1939 2004 9.118236 GTTAGATGCAACATGAAACTAACTTTC 57.882 33.333 0.00 0.00 39.11 2.62
1975 2040 9.787435 AACTTTAGTATTGTAGATGTTCCAACA 57.213 29.630 0.00 0.00 44.06 3.33
1976 2041 9.787435 ACTTTAGTATTGTAGATGTTCCAACAA 57.213 29.630 0.00 0.00 43.03 2.83
1979 2044 9.787435 TTAGTATTGTAGATGTTCCAACAAAGT 57.213 29.630 0.00 0.00 43.03 2.66
1980 2045 8.691661 AGTATTGTAGATGTTCCAACAAAGTT 57.308 30.769 0.00 0.00 43.03 2.66
1981 2046 8.567948 AGTATTGTAGATGTTCCAACAAAGTTG 58.432 33.333 3.00 3.00 43.03 3.16
1982 2047 5.766150 TGTAGATGTTCCAACAAAGTTGG 57.234 39.130 20.09 20.09 43.03 3.77
1983 2048 5.197451 TGTAGATGTTCCAACAAAGTTGGT 58.803 37.500 23.74 8.74 43.03 3.67
1984 2049 4.918810 AGATGTTCCAACAAAGTTGGTC 57.081 40.909 23.74 18.58 43.03 4.02
1985 2050 4.277476 AGATGTTCCAACAAAGTTGGTCA 58.723 39.130 23.74 22.21 43.03 4.02
1986 2051 4.709397 AGATGTTCCAACAAAGTTGGTCAA 59.291 37.500 23.74 12.31 43.03 3.18
1987 2052 4.873746 TGTTCCAACAAAGTTGGTCAAA 57.126 36.364 23.74 11.71 40.40 2.69
1988 2053 4.561105 TGTTCCAACAAAGTTGGTCAAAC 58.439 39.130 23.74 20.49 40.40 2.93
1989 2054 4.282195 TGTTCCAACAAAGTTGGTCAAACT 59.718 37.500 23.74 0.00 41.62 2.66
2044 2109 7.611213 ATGTAGACTAAAAAGAAACGGATGG 57.389 36.000 0.00 0.00 0.00 3.51
2045 2110 6.761312 TGTAGACTAAAAAGAAACGGATGGA 58.239 36.000 0.00 0.00 0.00 3.41
2046 2111 6.872020 TGTAGACTAAAAAGAAACGGATGGAG 59.128 38.462 0.00 0.00 0.00 3.86
2089 2154 6.371548 TCTGACATTGACAGCCACTAAAATAC 59.628 38.462 10.70 0.00 35.61 1.89
2090 2155 6.237901 TGACATTGACAGCCACTAAAATACT 58.762 36.000 0.00 0.00 0.00 2.12
2091 2156 6.371548 TGACATTGACAGCCACTAAAATACTC 59.628 38.462 0.00 0.00 0.00 2.59
2092 2157 6.476378 ACATTGACAGCCACTAAAATACTCT 58.524 36.000 0.00 0.00 0.00 3.24
2093 2158 6.595716 ACATTGACAGCCACTAAAATACTCTC 59.404 38.462 0.00 0.00 0.00 3.20
2094 2159 6.360370 TTGACAGCCACTAAAATACTCTCT 57.640 37.500 0.00 0.00 0.00 3.10
2095 2160 5.967088 TGACAGCCACTAAAATACTCTCTC 58.033 41.667 0.00 0.00 0.00 3.20
2096 2161 5.105310 TGACAGCCACTAAAATACTCTCTCC 60.105 44.000 0.00 0.00 0.00 3.71
2097 2162 4.777896 ACAGCCACTAAAATACTCTCTCCA 59.222 41.667 0.00 0.00 0.00 3.86
2098 2163 5.426833 ACAGCCACTAAAATACTCTCTCCAT 59.573 40.000 0.00 0.00 0.00 3.41
2099 2164 6.069963 ACAGCCACTAAAATACTCTCTCCATT 60.070 38.462 0.00 0.00 0.00 3.16
2100 2165 6.825721 CAGCCACTAAAATACTCTCTCCATTT 59.174 38.462 0.00 0.00 0.00 2.32
2101 2166 7.337942 CAGCCACTAAAATACTCTCTCCATTTT 59.662 37.037 0.00 0.00 36.25 1.82
2102 2167 7.890655 AGCCACTAAAATACTCTCTCCATTTTT 59.109 33.333 0.00 0.00 34.57 1.94
2103 2168 9.174166 GCCACTAAAATACTCTCTCCATTTTTA 57.826 33.333 0.00 0.00 34.57 1.52
2113 2178 8.499403 ACTCTCTCCATTTTTATTTAGTCTGC 57.501 34.615 0.00 0.00 0.00 4.26
2114 2179 8.103305 ACTCTCTCCATTTTTATTTAGTCTGCA 58.897 33.333 0.00 0.00 0.00 4.41
2115 2180 9.118300 CTCTCTCCATTTTTATTTAGTCTGCAT 57.882 33.333 0.00 0.00 0.00 3.96
2132 2197 8.659925 AGTCTGCATATTAGATTTGACTGAAG 57.340 34.615 0.00 0.00 33.09 3.02
2133 2198 8.263640 AGTCTGCATATTAGATTTGACTGAAGT 58.736 33.333 0.00 0.00 33.09 3.01
2134 2199 8.547069 GTCTGCATATTAGATTTGACTGAAGTC 58.453 37.037 3.41 3.41 44.97 3.01
2291 2356 9.973450 TTTTTATAAGCTTTGACAAAGTATGCA 57.027 25.926 24.98 9.97 40.64 3.96
2292 2357 9.973450 TTTTATAAGCTTTGACAAAGTATGCAA 57.027 25.926 24.98 13.47 40.64 4.08
2293 2358 9.973450 TTTATAAGCTTTGACAAAGTATGCAAA 57.027 25.926 24.98 17.33 40.64 3.68
2294 2359 9.624697 TTATAAGCTTTGACAAAGTATGCAAAG 57.375 29.630 24.98 0.00 45.57 2.77
2298 2363 6.206600 CTTTGACAAAGTATGCAAAGCTTG 57.793 37.500 18.12 0.00 41.58 4.01
2299 2364 5.512753 TTGACAAAGTATGCAAAGCTTGA 57.487 34.783 0.00 0.00 0.00 3.02
2300 2365 4.858935 TGACAAAGTATGCAAAGCTTGAC 58.141 39.130 0.00 0.00 0.00 3.18
2301 2366 4.580167 TGACAAAGTATGCAAAGCTTGACT 59.420 37.500 0.00 0.00 0.00 3.41
2302 2367 5.067674 TGACAAAGTATGCAAAGCTTGACTT 59.932 36.000 0.00 2.58 41.70 3.01
2303 2368 5.523369 ACAAAGTATGCAAAGCTTGACTTC 58.477 37.500 0.00 0.00 37.75 3.01
2304 2369 4.410492 AAGTATGCAAAGCTTGACTTCG 57.590 40.909 0.00 0.00 37.75 3.79
2305 2370 3.664107 AGTATGCAAAGCTTGACTTCGA 58.336 40.909 0.00 0.00 37.75 3.71
2306 2371 2.977405 ATGCAAAGCTTGACTTCGAC 57.023 45.000 0.00 0.00 37.75 4.20
2307 2372 0.944386 TGCAAAGCTTGACTTCGACC 59.056 50.000 0.00 0.00 37.75 4.79
2308 2373 0.944386 GCAAAGCTTGACTTCGACCA 59.056 50.000 0.00 0.00 37.75 4.02
2309 2374 1.333619 GCAAAGCTTGACTTCGACCAA 59.666 47.619 0.00 0.00 37.75 3.67
2310 2375 2.223479 GCAAAGCTTGACTTCGACCAAA 60.223 45.455 0.00 0.00 37.75 3.28
2311 2376 3.621794 CAAAGCTTGACTTCGACCAAAG 58.378 45.455 0.00 0.00 37.75 2.77
2312 2377 1.230324 AGCTTGACTTCGACCAAAGC 58.770 50.000 11.43 11.43 0.00 3.51
2313 2378 1.202698 AGCTTGACTTCGACCAAAGCT 60.203 47.619 14.71 14.71 0.00 3.74
2314 2379 2.037251 AGCTTGACTTCGACCAAAGCTA 59.963 45.455 17.52 0.00 30.72 3.32
2315 2380 2.806244 GCTTGACTTCGACCAAAGCTAA 59.194 45.455 11.90 0.00 0.00 3.09
2316 2381 3.437049 GCTTGACTTCGACCAAAGCTAAT 59.563 43.478 11.90 0.00 0.00 1.73
2317 2382 4.630069 GCTTGACTTCGACCAAAGCTAATA 59.370 41.667 11.90 0.00 0.00 0.98
2318 2383 5.446073 GCTTGACTTCGACCAAAGCTAATAC 60.446 44.000 11.90 0.00 0.00 1.89
2319 2384 5.142061 TGACTTCGACCAAAGCTAATACA 57.858 39.130 0.00 0.00 0.00 2.29
2320 2385 5.543714 TGACTTCGACCAAAGCTAATACAA 58.456 37.500 0.00 0.00 0.00 2.41
2321 2386 5.407387 TGACTTCGACCAAAGCTAATACAAC 59.593 40.000 0.00 0.00 0.00 3.32
2322 2387 5.548406 ACTTCGACCAAAGCTAATACAACT 58.452 37.500 0.00 0.00 0.00 3.16
2323 2388 6.694447 ACTTCGACCAAAGCTAATACAACTA 58.306 36.000 0.00 0.00 0.00 2.24
2324 2389 7.156673 ACTTCGACCAAAGCTAATACAACTAA 58.843 34.615 0.00 0.00 0.00 2.24
2325 2390 7.331193 ACTTCGACCAAAGCTAATACAACTAAG 59.669 37.037 0.00 0.00 0.00 2.18
2326 2391 6.694447 TCGACCAAAGCTAATACAACTAAGT 58.306 36.000 0.00 0.00 0.00 2.24
2327 2392 7.829725 TCGACCAAAGCTAATACAACTAAGTA 58.170 34.615 0.00 0.00 0.00 2.24
2328 2393 8.306038 TCGACCAAAGCTAATACAACTAAGTAA 58.694 33.333 0.00 0.00 0.00 2.24
2329 2394 8.928733 CGACCAAAGCTAATACAACTAAGTAAA 58.071 33.333 0.00 0.00 0.00 2.01
2335 2400 9.492973 AAGCTAATACAACTAAGTAAAAACGGA 57.507 29.630 0.00 0.00 0.00 4.69
2336 2401 9.148104 AGCTAATACAACTAAGTAAAAACGGAG 57.852 33.333 0.00 0.00 0.00 4.63
2337 2402 8.385858 GCTAATACAACTAAGTAAAAACGGAGG 58.614 37.037 0.00 0.00 0.00 4.30
2338 2403 7.677454 AATACAACTAAGTAAAAACGGAGGG 57.323 36.000 0.00 0.00 0.00 4.30
2339 2404 5.294734 ACAACTAAGTAAAAACGGAGGGA 57.705 39.130 0.00 0.00 0.00 4.20
2340 2405 5.303165 ACAACTAAGTAAAAACGGAGGGAG 58.697 41.667 0.00 0.00 0.00 4.30
2341 2406 5.163269 ACAACTAAGTAAAAACGGAGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
2342 2407 6.041979 ACAACTAAGTAAAAACGGAGGGAGTA 59.958 38.462 0.00 0.00 0.00 2.59
2363 2428 4.625607 AAGAAAGGAGAGTAACCCACTG 57.374 45.455 0.00 0.00 37.72 3.66
2364 2429 3.858135 AGAAAGGAGAGTAACCCACTGA 58.142 45.455 0.00 0.00 37.72 3.41
2365 2430 3.579151 AGAAAGGAGAGTAACCCACTGAC 59.421 47.826 0.00 0.00 37.72 3.51
2367 2432 1.203025 AGGAGAGTAACCCACTGACGT 60.203 52.381 0.00 0.00 37.72 4.34
2368 2433 1.201880 GGAGAGTAACCCACTGACGTC 59.798 57.143 9.11 9.11 37.72 4.34
2390 4250 4.649674 TCGACTGAGGCACTTTAATAGGAT 59.350 41.667 0.00 0.00 41.55 3.24
2395 4255 1.880027 GGCACTTTAATAGGATGCGGG 59.120 52.381 0.00 0.00 37.15 6.13
2400 4260 0.840617 TTAATAGGATGCGGGGCACA 59.159 50.000 0.00 0.00 43.04 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.612251 CGTAGGGGACATCACCGT 58.388 61.111 0.00 0.00 46.41 4.83
92 93 5.568620 AGTAAAACCACAAGACAGAGGAT 57.431 39.130 0.00 0.00 0.00 3.24
221 222 3.906720 TCTATACCCTTCTTGCCACAC 57.093 47.619 0.00 0.00 0.00 3.82
236 237 6.288941 TGTGATTTCGTCCCACTTTCTATA 57.711 37.500 0.00 0.00 0.00 1.31
245 246 2.551887 CAACACATGTGATTTCGTCCCA 59.448 45.455 31.94 0.00 0.00 4.37
488 498 1.305129 CCCACCCAACATGCATGGA 60.305 57.895 29.41 0.00 40.56 3.41
613 623 3.524541 TGTCACATCATCAACGATCCAG 58.475 45.455 0.00 0.00 0.00 3.86
932 966 3.370953 GGAACTGGGAAGTGCATGTAGAT 60.371 47.826 0.00 0.00 0.00 1.98
1479 1534 7.663493 TGGACTCACACAAACACATTCATATTA 59.337 33.333 0.00 0.00 0.00 0.98
1716 1779 2.774234 ACCCATCACTCACCCTTAGATG 59.226 50.000 0.00 0.00 36.67 2.90
1728 1793 7.944554 CCCTATGATATTTTACAACCCATCACT 59.055 37.037 0.00 0.00 0.00 3.41
1801 1866 5.526846 GCAGACAAAAGAGATATGAAGGGAG 59.473 44.000 0.00 0.00 0.00 4.30
1802 1867 5.045651 TGCAGACAAAAGAGATATGAAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
1803 1868 5.188434 TGCAGACAAAAGAGATATGAAGGG 58.812 41.667 0.00 0.00 0.00 3.95
1804 1869 6.939132 ATGCAGACAAAAGAGATATGAAGG 57.061 37.500 0.00 0.00 0.00 3.46
1805 1870 9.269453 TGATATGCAGACAAAAGAGATATGAAG 57.731 33.333 0.00 0.00 0.00 3.02
1822 1887 6.094464 TGACTTTGACCAAATCTGATATGCAG 59.906 38.462 0.00 0.00 46.31 4.41
1823 1888 5.945191 TGACTTTGACCAAATCTGATATGCA 59.055 36.000 0.00 0.00 0.00 3.96
1824 1889 6.441093 TGACTTTGACCAAATCTGATATGC 57.559 37.500 0.00 0.00 0.00 3.14
1825 1890 8.517878 AGTTTGACTTTGACCAAATCTGATATG 58.482 33.333 0.00 0.00 35.14 1.78
1826 1891 8.641498 AGTTTGACTTTGACCAAATCTGATAT 57.359 30.769 0.00 0.00 35.14 1.63
1827 1892 8.463930 AAGTTTGACTTTGACCAAATCTGATA 57.536 30.769 0.00 0.00 34.11 2.15
1828 1893 6.966534 AGTTTGACTTTGACCAAATCTGAT 57.033 33.333 0.00 0.00 35.14 2.90
1829 1894 6.773976 AAGTTTGACTTTGACCAAATCTGA 57.226 33.333 0.00 0.00 34.11 3.27
1841 1906 6.339587 TCAAGGTTGACAAAGTTTGACTTT 57.660 33.333 22.23 9.59 39.45 2.66
1842 1907 5.975693 TCAAGGTTGACAAAGTTTGACTT 57.024 34.783 22.23 13.37 34.21 3.01
1905 1970 9.571810 GTTTCATGTTGCATCTAACAATATTGA 57.428 29.630 22.16 0.00 43.13 2.57
1906 1971 9.577110 AGTTTCATGTTGCATCTAACAATATTG 57.423 29.630 14.01 14.01 43.13 1.90
1910 1975 8.796475 AGTTAGTTTCATGTTGCATCTAACAAT 58.204 29.630 14.86 1.24 43.13 2.71
1911 1976 8.165239 AGTTAGTTTCATGTTGCATCTAACAA 57.835 30.769 14.86 0.00 43.13 2.83
1912 1977 7.744087 AGTTAGTTTCATGTTGCATCTAACA 57.256 32.000 14.86 0.00 43.93 2.41
1913 1978 9.118236 GAAAGTTAGTTTCATGTTGCATCTAAC 57.882 33.333 7.58 0.00 43.70 2.34
1949 2014 9.787435 TGTTGGAACATCTACAATACTAAAGTT 57.213 29.630 0.00 0.00 39.30 2.66
1950 2015 9.787435 TTGTTGGAACATCTACAATACTAAAGT 57.213 29.630 0.00 0.00 39.30 2.66
1953 2018 9.787435 ACTTTGTTGGAACATCTACAATACTAA 57.213 29.630 0.00 0.00 39.30 2.24
1954 2019 9.787435 AACTTTGTTGGAACATCTACAATACTA 57.213 29.630 0.00 0.00 39.30 1.82
1955 2020 8.567948 CAACTTTGTTGGAACATCTACAATACT 58.432 33.333 2.79 0.00 39.30 2.12
1956 2021 7.807907 CCAACTTTGTTGGAACATCTACAATAC 59.192 37.037 21.06 0.00 42.06 1.89
1957 2022 7.504238 ACCAACTTTGTTGGAACATCTACAATA 59.496 33.333 29.19 0.00 42.06 1.90
1958 2023 6.323739 ACCAACTTTGTTGGAACATCTACAAT 59.676 34.615 29.19 5.90 42.06 2.71
1959 2024 5.654650 ACCAACTTTGTTGGAACATCTACAA 59.345 36.000 29.19 0.00 42.06 2.41
1960 2025 5.197451 ACCAACTTTGTTGGAACATCTACA 58.803 37.500 29.19 0.00 42.06 2.74
1961 2026 5.298276 TGACCAACTTTGTTGGAACATCTAC 59.702 40.000 29.19 13.25 42.06 2.59
1962 2027 5.441500 TGACCAACTTTGTTGGAACATCTA 58.558 37.500 29.19 9.70 42.06 1.98
1963 2028 4.277476 TGACCAACTTTGTTGGAACATCT 58.723 39.130 29.19 11.06 42.06 2.90
1964 2029 4.647424 TGACCAACTTTGTTGGAACATC 57.353 40.909 29.19 18.74 42.06 3.06
1965 2030 5.046663 AGTTTGACCAACTTTGTTGGAACAT 60.047 36.000 29.19 12.01 43.89 2.71
1966 2031 4.282195 AGTTTGACCAACTTTGTTGGAACA 59.718 37.500 29.19 23.85 43.89 3.18
1967 2032 4.816392 AGTTTGACCAACTTTGTTGGAAC 58.184 39.130 29.19 22.64 43.89 3.62
2018 2083 9.326413 CCATCCGTTTCTTTTTAGTCTACATAT 57.674 33.333 0.00 0.00 0.00 1.78
2019 2084 8.533657 TCCATCCGTTTCTTTTTAGTCTACATA 58.466 33.333 0.00 0.00 0.00 2.29
2020 2085 7.391620 TCCATCCGTTTCTTTTTAGTCTACAT 58.608 34.615 0.00 0.00 0.00 2.29
2021 2086 6.761312 TCCATCCGTTTCTTTTTAGTCTACA 58.239 36.000 0.00 0.00 0.00 2.74
2022 2087 6.872547 ACTCCATCCGTTTCTTTTTAGTCTAC 59.127 38.462 0.00 0.00 0.00 2.59
2023 2088 7.001099 ACTCCATCCGTTTCTTTTTAGTCTA 57.999 36.000 0.00 0.00 0.00 2.59
2024 2089 5.866207 ACTCCATCCGTTTCTTTTTAGTCT 58.134 37.500 0.00 0.00 0.00 3.24
2025 2090 7.662604 TTACTCCATCCGTTTCTTTTTAGTC 57.337 36.000 0.00 0.00 0.00 2.59
2026 2091 9.901172 ATATTACTCCATCCGTTTCTTTTTAGT 57.099 29.630 0.00 0.00 0.00 2.24
2054 2119 7.940688 TGGCTGTCAATGTCAGATATCATAAAT 59.059 33.333 11.46 0.00 35.20 1.40
2073 2138 5.105310 TGGAGAGAGTATTTTAGTGGCTGTC 60.105 44.000 0.00 0.00 0.00 3.51
2089 2154 8.498054 TGCAGACTAAATAAAAATGGAGAGAG 57.502 34.615 0.00 0.00 0.00 3.20
2106 2171 9.755804 CTTCAGTCAAATCTAATATGCAGACTA 57.244 33.333 0.00 0.00 33.72 2.59
2107 2172 8.263640 ACTTCAGTCAAATCTAATATGCAGACT 58.736 33.333 0.00 0.00 35.66 3.24
2108 2173 8.430801 ACTTCAGTCAAATCTAATATGCAGAC 57.569 34.615 0.00 0.00 0.00 3.51
2109 2174 8.654230 GACTTCAGTCAAATCTAATATGCAGA 57.346 34.615 1.86 0.00 44.18 4.26
2265 2330 9.973450 TGCATACTTTGTCAAAGCTTATAAAAA 57.027 25.926 22.58 0.00 42.27 1.94
2266 2331 9.973450 TTGCATACTTTGTCAAAGCTTATAAAA 57.027 25.926 22.58 10.17 42.27 1.52
2267 2332 9.973450 TTTGCATACTTTGTCAAAGCTTATAAA 57.027 25.926 22.58 15.72 42.27 1.40
2268 2333 9.624697 CTTTGCATACTTTGTCAAAGCTTATAA 57.375 29.630 22.58 11.52 42.27 0.98
2275 2340 5.978919 TCAAGCTTTGCATACTTTGTCAAAG 59.021 36.000 21.34 21.34 44.01 2.77
2276 2341 5.748152 GTCAAGCTTTGCATACTTTGTCAAA 59.252 36.000 0.00 0.00 33.40 2.69
2277 2342 5.067674 AGTCAAGCTTTGCATACTTTGTCAA 59.932 36.000 0.00 0.00 0.00 3.18
2278 2343 4.580167 AGTCAAGCTTTGCATACTTTGTCA 59.420 37.500 0.00 0.00 0.00 3.58
2279 2344 5.113502 AGTCAAGCTTTGCATACTTTGTC 57.886 39.130 0.00 0.00 0.00 3.18
2280 2345 5.520376 AAGTCAAGCTTTGCATACTTTGT 57.480 34.783 0.00 0.00 32.57 2.83
2281 2346 4.614284 CGAAGTCAAGCTTTGCATACTTTG 59.386 41.667 0.00 2.67 37.59 2.77
2282 2347 4.515191 TCGAAGTCAAGCTTTGCATACTTT 59.485 37.500 0.00 0.00 38.26 2.66
2283 2348 4.065088 TCGAAGTCAAGCTTTGCATACTT 58.935 39.130 0.00 1.97 38.26 2.24
2284 2349 3.433615 GTCGAAGTCAAGCTTTGCATACT 59.566 43.478 0.00 0.00 38.26 2.12
2285 2350 3.424962 GGTCGAAGTCAAGCTTTGCATAC 60.425 47.826 0.00 0.00 38.26 2.39
2286 2351 2.742053 GGTCGAAGTCAAGCTTTGCATA 59.258 45.455 0.00 0.00 38.26 3.14
2287 2352 1.537202 GGTCGAAGTCAAGCTTTGCAT 59.463 47.619 0.00 0.00 38.26 3.96
2288 2353 0.944386 GGTCGAAGTCAAGCTTTGCA 59.056 50.000 0.00 0.00 38.26 4.08
2289 2354 0.944386 TGGTCGAAGTCAAGCTTTGC 59.056 50.000 0.00 0.00 38.26 3.68
2290 2355 3.621794 CTTTGGTCGAAGTCAAGCTTTG 58.378 45.455 0.00 0.00 37.59 2.77
2291 2356 2.033424 GCTTTGGTCGAAGTCAAGCTTT 59.967 45.455 0.00 0.00 37.59 3.51
2292 2357 1.604278 GCTTTGGTCGAAGTCAAGCTT 59.396 47.619 10.93 0.00 40.76 3.74
2293 2358 1.202698 AGCTTTGGTCGAAGTCAAGCT 60.203 47.619 13.77 13.77 0.00 3.74
2294 2359 1.230324 AGCTTTGGTCGAAGTCAAGC 58.770 50.000 10.43 10.43 0.00 4.01
2295 2360 5.637810 TGTATTAGCTTTGGTCGAAGTCAAG 59.362 40.000 0.00 0.00 0.00 3.02
2296 2361 5.543714 TGTATTAGCTTTGGTCGAAGTCAA 58.456 37.500 0.00 0.00 0.00 3.18
2297 2362 5.142061 TGTATTAGCTTTGGTCGAAGTCA 57.858 39.130 0.00 0.00 0.00 3.41
2298 2363 5.638234 AGTTGTATTAGCTTTGGTCGAAGTC 59.362 40.000 0.00 0.00 0.00 3.01
2299 2364 5.548406 AGTTGTATTAGCTTTGGTCGAAGT 58.452 37.500 0.00 0.00 0.00 3.01
2300 2365 7.331193 ACTTAGTTGTATTAGCTTTGGTCGAAG 59.669 37.037 0.00 0.00 0.00 3.79
2301 2366 7.156673 ACTTAGTTGTATTAGCTTTGGTCGAA 58.843 34.615 0.00 0.00 0.00 3.71
2302 2367 6.694447 ACTTAGTTGTATTAGCTTTGGTCGA 58.306 36.000 0.00 0.00 0.00 4.20
2303 2368 6.963049 ACTTAGTTGTATTAGCTTTGGTCG 57.037 37.500 0.00 0.00 0.00 4.79
2309 2374 9.492973 TCCGTTTTTACTTAGTTGTATTAGCTT 57.507 29.630 0.00 0.00 0.00 3.74
2310 2375 9.148104 CTCCGTTTTTACTTAGTTGTATTAGCT 57.852 33.333 0.00 0.00 0.00 3.32
2311 2376 8.385858 CCTCCGTTTTTACTTAGTTGTATTAGC 58.614 37.037 0.00 0.00 0.00 3.09
2312 2377 8.876790 CCCTCCGTTTTTACTTAGTTGTATTAG 58.123 37.037 0.00 0.00 0.00 1.73
2313 2378 8.592809 TCCCTCCGTTTTTACTTAGTTGTATTA 58.407 33.333 0.00 0.00 0.00 0.98
2314 2379 7.452562 TCCCTCCGTTTTTACTTAGTTGTATT 58.547 34.615 0.00 0.00 0.00 1.89
2315 2380 7.008021 TCCCTCCGTTTTTACTTAGTTGTAT 57.992 36.000 0.00 0.00 0.00 2.29
2316 2381 6.041979 ACTCCCTCCGTTTTTACTTAGTTGTA 59.958 38.462 0.00 0.00 0.00 2.41
2317 2382 5.163269 ACTCCCTCCGTTTTTACTTAGTTGT 60.163 40.000 0.00 0.00 0.00 3.32
2318 2383 5.303165 ACTCCCTCCGTTTTTACTTAGTTG 58.697 41.667 0.00 0.00 0.00 3.16
2319 2384 5.557576 ACTCCCTCCGTTTTTACTTAGTT 57.442 39.130 0.00 0.00 0.00 2.24
2320 2385 6.494835 TCTTACTCCCTCCGTTTTTACTTAGT 59.505 38.462 0.00 0.00 0.00 2.24
2321 2386 6.928520 TCTTACTCCCTCCGTTTTTACTTAG 58.071 40.000 0.00 0.00 0.00 2.18
2322 2387 6.916360 TCTTACTCCCTCCGTTTTTACTTA 57.084 37.500 0.00 0.00 0.00 2.24
2323 2388 5.813513 TCTTACTCCCTCCGTTTTTACTT 57.186 39.130 0.00 0.00 0.00 2.24
2324 2389 5.813513 TTCTTACTCCCTCCGTTTTTACT 57.186 39.130 0.00 0.00 0.00 2.24
2325 2390 5.410746 CCTTTCTTACTCCCTCCGTTTTTAC 59.589 44.000 0.00 0.00 0.00 2.01
2326 2391 5.307716 TCCTTTCTTACTCCCTCCGTTTTTA 59.692 40.000 0.00 0.00 0.00 1.52
2327 2392 4.103627 TCCTTTCTTACTCCCTCCGTTTTT 59.896 41.667 0.00 0.00 0.00 1.94
2328 2393 3.649502 TCCTTTCTTACTCCCTCCGTTTT 59.350 43.478 0.00 0.00 0.00 2.43
2329 2394 3.245441 TCCTTTCTTACTCCCTCCGTTT 58.755 45.455 0.00 0.00 0.00 3.60
2330 2395 2.832733 CTCCTTTCTTACTCCCTCCGTT 59.167 50.000 0.00 0.00 0.00 4.44
2331 2396 2.042706 TCTCCTTTCTTACTCCCTCCGT 59.957 50.000 0.00 0.00 0.00 4.69
2332 2397 2.691011 CTCTCCTTTCTTACTCCCTCCG 59.309 54.545 0.00 0.00 0.00 4.63
2333 2398 3.715287 ACTCTCCTTTCTTACTCCCTCC 58.285 50.000 0.00 0.00 0.00 4.30
2334 2399 5.127519 GGTTACTCTCCTTTCTTACTCCCTC 59.872 48.000 0.00 0.00 0.00 4.30
2335 2400 5.024785 GGTTACTCTCCTTTCTTACTCCCT 58.975 45.833 0.00 0.00 0.00 4.20
2336 2401 4.161942 GGGTTACTCTCCTTTCTTACTCCC 59.838 50.000 0.00 0.00 0.00 4.30
2337 2402 4.776308 TGGGTTACTCTCCTTTCTTACTCC 59.224 45.833 0.00 0.00 0.00 3.85
2338 2403 5.481122 AGTGGGTTACTCTCCTTTCTTACTC 59.519 44.000 0.00 0.00 33.17 2.59
2339 2404 5.246429 CAGTGGGTTACTCTCCTTTCTTACT 59.754 44.000 0.00 0.00 37.60 2.24
2340 2405 5.245526 TCAGTGGGTTACTCTCCTTTCTTAC 59.754 44.000 0.00 0.00 37.60 2.34
2341 2406 5.245526 GTCAGTGGGTTACTCTCCTTTCTTA 59.754 44.000 0.00 0.00 37.60 2.10
2342 2407 4.040584 GTCAGTGGGTTACTCTCCTTTCTT 59.959 45.833 0.00 0.00 37.60 2.52
2363 2428 0.318784 AAAGTGCCTCAGTCGACGTC 60.319 55.000 10.46 5.18 0.00 4.34
2364 2429 0.956633 TAAAGTGCCTCAGTCGACGT 59.043 50.000 10.46 0.00 0.00 4.34
2365 2430 2.060326 TTAAAGTGCCTCAGTCGACG 57.940 50.000 10.46 5.48 0.00 5.12
2367 2432 4.021229 TCCTATTAAAGTGCCTCAGTCGA 58.979 43.478 0.00 0.00 0.00 4.20
2368 2433 4.386867 TCCTATTAAAGTGCCTCAGTCG 57.613 45.455 0.00 0.00 0.00 4.18
2390 4250 1.602323 CTACCTTTTGTGCCCCGCA 60.602 57.895 0.00 0.00 35.60 5.69
2395 4255 0.035739 TCGGACCTACCTTTTGTGCC 59.964 55.000 0.00 0.00 36.31 5.01
2400 4260 2.332117 TGGACTTCGGACCTACCTTTT 58.668 47.619 0.00 0.00 36.31 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.