Multiple sequence alignment - TraesCS4A01G010500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G010500 chr4A 100.000 4073 0 0 1 4073 6008443 6012515 0.000000e+00 7522
1 TraesCS4A01G010500 chr4A 78.007 582 104 19 1010 1579 6016516 6017085 1.080000e-90 344
2 TraesCS4A01G010500 chr4D 94.037 805 29 7 960 1759 463689723 463688933 0.000000e+00 1203
3 TraesCS4A01G010500 chr4D 86.161 896 47 36 1794 2671 463688295 463687459 0.000000e+00 896
4 TraesCS4A01G010500 chr4D 85.067 750 73 22 234 960 463690528 463689795 0.000000e+00 728
5 TraesCS4A01G010500 chr4D 80.037 541 90 14 1010 1544 463467131 463466603 6.390000e-103 385
6 TraesCS4A01G010500 chr4D 83.654 416 48 11 3052 3450 463687267 463686855 1.380000e-99 374
7 TraesCS4A01G010500 chr4D 78.223 574 105 15 1046 1612 463677941 463677381 2.330000e-92 350
8 TraesCS4A01G010500 chr4D 96.528 144 5 0 2876 3019 463687412 463687269 5.260000e-59 239
9 TraesCS4A01G010500 chr4D 96.923 130 4 0 1 130 462299396 462299525 6.850000e-53 219
10 TraesCS4A01G010500 chr4D 96.212 132 5 0 1 132 501454900 501455031 2.470000e-52 217
11 TraesCS4A01G010500 chr4D 93.197 147 8 2 1 145 153009838 153009692 8.870000e-52 215
12 TraesCS4A01G010500 chr4D 93.103 145 7 2 1 145 267946437 267946296 4.130000e-50 209
13 TraesCS4A01G010500 chr4D 94.186 86 5 0 151 236 463695020 463694935 9.190000e-27 132
14 TraesCS4A01G010500 chr4B 96.126 697 21 3 999 1695 579433761 579433071 0.000000e+00 1133
15 TraesCS4A01G010500 chr4B 82.868 1325 147 47 2794 4073 579430057 579428768 0.000000e+00 1116
16 TraesCS4A01G010500 chr4B 83.543 717 60 26 269 960 579434536 579433853 5.780000e-173 617
17 TraesCS4A01G010500 chr4B 79.889 542 87 17 1046 1579 579408885 579408358 1.070000e-100 377
18 TraesCS4A01G010500 chr4B 85.088 342 28 8 2331 2671 579430374 579430055 1.090000e-85 327
19 TraesCS4A01G010500 chr3A 93.197 147 8 2 1 145 387074291 387074437 8.870000e-52 215
20 TraesCS4A01G010500 chr5D 93.706 143 7 2 5 145 152361175 152361317 3.190000e-51 213
21 TraesCS4A01G010500 chrUn 95.455 132 5 1 2666 2796 17025390 17025259 4.130000e-50 209
22 TraesCS4A01G010500 chrUn 95.455 132 5 1 2666 2796 17027623 17027492 4.130000e-50 209
23 TraesCS4A01G010500 chrUn 95.455 132 5 1 2666 2796 292131056 292131187 4.130000e-50 209
24 TraesCS4A01G010500 chrUn 95.455 132 5 1 2666 2796 302852126 302852257 4.130000e-50 209
25 TraesCS4A01G010500 chrUn 95.455 132 5 1 2666 2796 302859429 302859298 4.130000e-50 209
26 TraesCS4A01G010500 chr2B 94.776 134 7 0 2664 2797 500205504 500205637 4.130000e-50 209
27 TraesCS4A01G010500 chr2B 93.478 138 7 2 2668 2805 551567867 551568002 1.920000e-48 204
28 TraesCS4A01G010500 chr2B 73.295 352 72 18 1184 1524 175409869 175410209 4.300000e-20 110
29 TraesCS4A01G010500 chr1D 95.455 132 5 1 2666 2796 97537678 97537547 4.130000e-50 209
30 TraesCS4A01G010500 chr7A 92.000 150 9 3 1 148 181046622 181046474 1.480000e-49 207
31 TraesCS4A01G010500 chr3B 94.776 134 6 1 2664 2797 181237256 181237124 1.480000e-49 207
32 TraesCS4A01G010500 chr3B 77.717 184 26 12 3712 3890 16699690 16699863 9.320000e-17 99
33 TraesCS4A01G010500 chr6A 92.466 146 8 3 1 144 235338221 235338365 5.340000e-49 206
34 TraesCS4A01G010500 chr7D 91.837 147 10 2 1 145 200826325 200826471 1.920000e-48 204
35 TraesCS4A01G010500 chr2D 73.876 356 63 25 1184 1524 122392966 122393306 9.250000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G010500 chr4A 6008443 6012515 4072 False 7522.00 7522 100.00000 1 4073 1 chr4A.!!$F1 4072
1 TraesCS4A01G010500 chr4A 6016516 6017085 569 False 344.00 344 78.00700 1010 1579 1 chr4A.!!$F2 569
2 TraesCS4A01G010500 chr4D 463686855 463690528 3673 True 688.00 1203 89.08940 234 3450 5 chr4D.!!$R6 3216
3 TraesCS4A01G010500 chr4D 463466603 463467131 528 True 385.00 385 80.03700 1010 1544 1 chr4D.!!$R3 534
4 TraesCS4A01G010500 chr4D 463677381 463677941 560 True 350.00 350 78.22300 1046 1612 1 chr4D.!!$R4 566
5 TraesCS4A01G010500 chr4B 579428768 579434536 5768 True 798.25 1133 86.90625 269 4073 4 chr4B.!!$R2 3804
6 TraesCS4A01G010500 chr4B 579408358 579408885 527 True 377.00 377 79.88900 1046 1579 1 chr4B.!!$R1 533
7 TraesCS4A01G010500 chrUn 17025259 17027623 2364 True 209.00 209 95.45500 2666 2796 2 chrUn.!!$R2 130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.036483 GAATTTGGGCGGGTTTGCAT 60.036 50.0 0.0 0.0 36.28 3.96 F
448 451 0.037590 TGGTTCTTGCCTACGCCAAT 59.962 50.0 0.0 0.0 0.00 3.16 F
757 787 0.105593 TCCAGATTCCGCTGAGATGC 59.894 55.0 0.0 0.0 38.14 3.91 F
2040 2780 0.038890 TCCCGCCCAACAATCAATCA 59.961 50.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1817 0.035630 ACCAGAGCTCAAGTGGCATC 60.036 55.0 17.77 0.0 34.40 3.91 R
2021 2761 0.038890 TGATTGATTGTTGGGCGGGA 59.961 50.0 0.00 0.0 0.00 5.14 R
2669 5507 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
3950 8486 0.038709 GCCCATGCGTGCAACTTTTA 60.039 50.0 0.00 0.0 31.75 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.570068 TTAGTTTTTACACATGGGATTACTCC 57.430 34.615 0.00 0.00 41.26 3.85
51 52 6.790319 AGTTTTTACACATGGGATTACTCCT 58.210 36.000 0.00 0.00 41.74 3.69
52 53 6.659242 AGTTTTTACACATGGGATTACTCCTG 59.341 38.462 0.00 0.00 41.74 3.86
53 54 2.717639 ACACATGGGATTACTCCTGC 57.282 50.000 0.00 0.00 41.74 4.85
54 55 1.915489 ACACATGGGATTACTCCTGCA 59.085 47.619 0.00 0.00 41.74 4.41
55 56 2.511218 ACACATGGGATTACTCCTGCAT 59.489 45.455 0.00 0.00 41.74 3.96
56 57 2.882761 CACATGGGATTACTCCTGCATG 59.117 50.000 13.41 13.41 42.45 4.06
57 58 2.158564 ACATGGGATTACTCCTGCATGG 60.159 50.000 17.08 0.00 41.71 3.66
58 59 0.846015 TGGGATTACTCCTGCATGGG 59.154 55.000 0.00 0.00 41.74 4.00
59 60 0.846693 GGGATTACTCCTGCATGGGT 59.153 55.000 0.00 0.00 41.74 4.51
60 61 1.202818 GGGATTACTCCTGCATGGGTC 60.203 57.143 0.00 0.00 41.74 4.46
61 62 1.490490 GGATTACTCCTGCATGGGTCA 59.510 52.381 0.00 0.00 38.65 4.02
62 63 2.092429 GGATTACTCCTGCATGGGTCAA 60.092 50.000 0.00 0.00 38.65 3.18
63 64 3.435601 GGATTACTCCTGCATGGGTCAAT 60.436 47.826 0.00 0.00 38.65 2.57
64 65 3.281727 TTACTCCTGCATGGGTCAATC 57.718 47.619 0.00 0.00 36.20 2.67
65 66 0.994247 ACTCCTGCATGGGTCAATCA 59.006 50.000 0.00 0.00 36.20 2.57
66 67 1.340405 ACTCCTGCATGGGTCAATCAC 60.340 52.381 0.00 0.00 36.20 3.06
67 68 0.697658 TCCTGCATGGGTCAATCACA 59.302 50.000 0.00 0.00 36.20 3.58
68 69 1.075212 TCCTGCATGGGTCAATCACAA 59.925 47.619 0.00 0.00 36.20 3.33
69 70 1.203052 CCTGCATGGGTCAATCACAAC 59.797 52.381 0.00 0.00 31.12 3.32
70 71 1.887854 CTGCATGGGTCAATCACAACA 59.112 47.619 0.00 0.00 31.12 3.33
71 72 1.887854 TGCATGGGTCAATCACAACAG 59.112 47.619 0.00 0.00 31.12 3.16
72 73 1.203052 GCATGGGTCAATCACAACAGG 59.797 52.381 0.00 0.00 31.12 4.00
73 74 2.517959 CATGGGTCAATCACAACAGGT 58.482 47.619 0.00 0.00 31.12 4.00
88 89 7.826260 CACAACAGGTGTTTTGTAAGAAAAT 57.174 32.000 0.00 0.00 42.75 1.82
89 90 7.674564 CACAACAGGTGTTTTGTAAGAAAATG 58.325 34.615 0.00 0.00 42.75 2.32
90 91 6.312672 ACAACAGGTGTTTTGTAAGAAAATGC 59.687 34.615 0.00 0.00 37.01 3.56
91 92 5.971763 ACAGGTGTTTTGTAAGAAAATGCA 58.028 33.333 0.00 0.00 0.00 3.96
92 93 6.581712 ACAGGTGTTTTGTAAGAAAATGCAT 58.418 32.000 0.00 0.00 0.00 3.96
93 94 6.701400 ACAGGTGTTTTGTAAGAAAATGCATC 59.299 34.615 0.00 0.00 0.00 3.91
94 95 6.925165 CAGGTGTTTTGTAAGAAAATGCATCT 59.075 34.615 0.00 0.00 0.00 2.90
95 96 7.439056 CAGGTGTTTTGTAAGAAAATGCATCTT 59.561 33.333 0.00 2.56 40.18 2.40
96 97 7.653311 AGGTGTTTTGTAAGAAAATGCATCTTC 59.347 33.333 4.50 4.50 38.13 2.87
97 98 7.437862 GGTGTTTTGTAAGAAAATGCATCTTCA 59.562 33.333 14.96 6.17 38.13 3.02
98 99 8.981647 GTGTTTTGTAAGAAAATGCATCTTCAT 58.018 29.630 14.96 5.65 38.13 2.57
99 100 8.980610 TGTTTTGTAAGAAAATGCATCTTCATG 58.019 29.630 14.96 0.00 38.13 3.07
100 101 8.981647 GTTTTGTAAGAAAATGCATCTTCATGT 58.018 29.630 14.96 2.72 38.13 3.21
101 102 9.545105 TTTTGTAAGAAAATGCATCTTCATGTT 57.455 25.926 14.96 3.62 38.13 2.71
102 103 8.746922 TTGTAAGAAAATGCATCTTCATGTTC 57.253 30.769 14.96 0.00 39.73 3.18
103 104 7.315142 TGTAAGAAAATGCATCTTCATGTTCC 58.685 34.615 14.96 0.00 40.10 3.62
104 105 4.990257 AGAAAATGCATCTTCATGTTCCG 58.010 39.130 14.96 0.00 40.10 4.30
105 106 4.460382 AGAAAATGCATCTTCATGTTCCGT 59.540 37.500 14.96 0.00 40.10 4.69
106 107 3.770263 AATGCATCTTCATGTTCCGTG 57.230 42.857 0.00 0.00 31.86 4.94
107 108 0.804364 TGCATCTTCATGTTCCGTGC 59.196 50.000 0.00 0.00 31.86 5.34
108 109 0.804364 GCATCTTCATGTTCCGTGCA 59.196 50.000 0.00 0.00 31.86 4.57
109 110 1.199789 GCATCTTCATGTTCCGTGCAA 59.800 47.619 0.00 0.00 31.86 4.08
110 111 2.159338 GCATCTTCATGTTCCGTGCAAT 60.159 45.455 0.00 0.00 31.86 3.56
111 112 3.431856 CATCTTCATGTTCCGTGCAATG 58.568 45.455 0.00 0.00 0.00 2.82
112 113 1.199789 TCTTCATGTTCCGTGCAATGC 59.800 47.619 0.00 0.00 0.00 3.56
113 114 0.957362 TTCATGTTCCGTGCAATGCA 59.043 45.000 2.72 2.72 35.60 3.96
114 115 1.175654 TCATGTTCCGTGCAATGCAT 58.824 45.000 12.38 0.00 41.91 3.96
115 116 1.135344 TCATGTTCCGTGCAATGCATG 60.135 47.619 19.73 19.73 44.25 4.06
129 130 3.106738 GCATGGGCATCTTGCTAGT 57.893 52.632 0.00 0.00 44.28 2.57
130 131 2.260844 GCATGGGCATCTTGCTAGTA 57.739 50.000 0.00 0.00 44.28 1.82
131 132 2.787994 GCATGGGCATCTTGCTAGTAT 58.212 47.619 0.00 0.00 44.28 2.12
132 133 2.486982 GCATGGGCATCTTGCTAGTATG 59.513 50.000 0.00 0.00 44.28 2.39
133 134 2.260844 TGGGCATCTTGCTAGTATGC 57.739 50.000 17.47 17.47 44.28 3.14
134 135 1.490069 TGGGCATCTTGCTAGTATGCA 59.510 47.619 22.84 0.00 46.18 3.96
148 149 9.613428 TTGCTAGTATGCAATCTTATAAACACT 57.387 29.630 0.00 0.00 46.43 3.55
149 150 9.613428 TGCTAGTATGCAATCTTATAAACACTT 57.387 29.630 0.00 0.00 40.29 3.16
169 170 9.715121 AACACTTTTGAAATCAATATTGATGCT 57.285 25.926 27.46 18.93 46.60 3.79
170 171 9.362539 ACACTTTTGAAATCAATATTGATGCTC 57.637 29.630 27.46 24.59 46.60 4.26
171 172 8.529102 CACTTTTGAAATCAATATTGATGCTCG 58.471 33.333 27.46 16.62 46.60 5.03
172 173 7.703621 ACTTTTGAAATCAATATTGATGCTCGG 59.296 33.333 27.46 18.63 46.60 4.63
173 174 5.112220 TGAAATCAATATTGATGCTCGGC 57.888 39.130 27.46 15.04 46.60 5.54
174 175 4.823442 TGAAATCAATATTGATGCTCGGCT 59.177 37.500 27.46 10.53 46.60 5.52
175 176 5.049198 TGAAATCAATATTGATGCTCGGCTC 60.049 40.000 27.46 16.17 46.60 4.70
176 177 2.407090 TCAATATTGATGCTCGGCTCG 58.593 47.619 14.23 0.00 31.01 5.03
177 178 2.035832 TCAATATTGATGCTCGGCTCGA 59.964 45.455 14.23 0.00 31.01 4.04
178 179 2.802247 CAATATTGATGCTCGGCTCGAA 59.198 45.455 10.04 0.00 34.74 3.71
179 180 2.820059 TATTGATGCTCGGCTCGAAT 57.180 45.000 0.00 0.00 34.74 3.34
180 181 1.959042 ATTGATGCTCGGCTCGAATT 58.041 45.000 0.00 0.00 34.74 2.17
181 182 1.737838 TTGATGCTCGGCTCGAATTT 58.262 45.000 0.00 0.00 34.74 1.82
182 183 1.009078 TGATGCTCGGCTCGAATTTG 58.991 50.000 0.00 0.00 34.74 2.32
183 184 0.305922 GATGCTCGGCTCGAATTTGG 59.694 55.000 0.00 0.00 34.74 3.28
184 185 1.097547 ATGCTCGGCTCGAATTTGGG 61.098 55.000 0.00 0.00 34.74 4.12
185 186 3.102097 CTCGGCTCGAATTTGGGC 58.898 61.111 9.27 9.27 34.74 5.36
187 188 3.876198 CGGCTCGAATTTGGGCGG 61.876 66.667 11.52 10.96 43.50 6.13
188 189 3.518068 GGCTCGAATTTGGGCGGG 61.518 66.667 11.52 0.00 0.00 6.13
189 190 2.750237 GCTCGAATTTGGGCGGGT 60.750 61.111 0.65 0.00 0.00 5.28
190 191 2.340328 GCTCGAATTTGGGCGGGTT 61.340 57.895 0.65 0.00 0.00 4.11
191 192 1.873270 GCTCGAATTTGGGCGGGTTT 61.873 55.000 0.65 0.00 0.00 3.27
192 193 0.109319 CTCGAATTTGGGCGGGTTTG 60.109 55.000 0.00 0.00 0.00 2.93
193 194 1.736282 CGAATTTGGGCGGGTTTGC 60.736 57.895 0.00 0.00 0.00 3.68
194 195 1.369321 GAATTTGGGCGGGTTTGCA 59.631 52.632 0.00 0.00 36.28 4.08
195 196 0.036483 GAATTTGGGCGGGTTTGCAT 60.036 50.000 0.00 0.00 36.28 3.96
196 197 0.321475 AATTTGGGCGGGTTTGCATG 60.321 50.000 0.00 0.00 36.28 4.06
197 198 2.801483 ATTTGGGCGGGTTTGCATGC 62.801 55.000 11.82 11.82 36.28 4.06
199 200 4.001226 GGGCGGGTTTGCATGCAA 62.001 61.111 28.80 28.80 36.28 4.08
200 201 2.738139 GGCGGGTTTGCATGCAAC 60.738 61.111 31.99 24.22 35.46 4.17
201 202 2.028778 GCGGGTTTGCATGCAACA 59.971 55.556 31.99 19.70 35.46 3.33
202 203 2.023223 GCGGGTTTGCATGCAACAG 61.023 57.895 31.99 21.85 35.46 3.16
203 204 2.023223 CGGGTTTGCATGCAACAGC 61.023 57.895 31.99 27.16 35.46 4.40
204 205 1.069427 GGGTTTGCATGCAACAGCA 59.931 52.632 31.99 15.48 43.41 4.41
209 210 2.312722 TTGCATGCAACAGCAACTTT 57.687 40.000 28.80 0.00 44.98 2.66
210 211 1.573026 TGCATGCAACAGCAACTTTG 58.427 45.000 20.30 0.00 42.37 2.77
222 223 2.957491 CAACTTTGCAGGGTTGTTCA 57.043 45.000 19.20 0.00 38.27 3.18
223 224 2.813061 CAACTTTGCAGGGTTGTTCAG 58.187 47.619 19.20 1.62 38.27 3.02
224 225 1.402787 ACTTTGCAGGGTTGTTCAGG 58.597 50.000 0.00 0.00 0.00 3.86
225 226 1.064017 ACTTTGCAGGGTTGTTCAGGA 60.064 47.619 0.00 0.00 0.00 3.86
226 227 1.610522 CTTTGCAGGGTTGTTCAGGAG 59.389 52.381 0.00 0.00 0.00 3.69
227 228 0.823356 TTGCAGGGTTGTTCAGGAGC 60.823 55.000 0.00 0.00 0.00 4.70
228 229 2.328099 GCAGGGTTGTTCAGGAGCG 61.328 63.158 0.00 0.00 0.00 5.03
229 230 2.032681 AGGGTTGTTCAGGAGCGC 59.967 61.111 0.00 0.00 0.00 5.92
230 231 3.423154 GGGTTGTTCAGGAGCGCG 61.423 66.667 0.00 0.00 0.00 6.86
231 232 2.665185 GGTTGTTCAGGAGCGCGT 60.665 61.111 8.43 0.00 0.00 6.01
232 233 2.668280 GGTTGTTCAGGAGCGCGTC 61.668 63.158 8.43 3.87 0.00 5.19
246 247 3.179265 CGTCTACGCCACGCCAAG 61.179 66.667 0.00 0.00 0.00 3.61
271 272 6.313252 CAAGAGTTCTTCTAGAAAGCAATGC 58.687 40.000 6.63 0.00 35.75 3.56
328 330 3.932089 GCTGTTTGTTTCAATGTGGTTGT 59.068 39.130 0.00 0.00 38.95 3.32
372 375 0.536460 TTCTGTTCTTTCCCGTGGCC 60.536 55.000 0.00 0.00 0.00 5.36
399 402 2.733218 CGTCGCGTCAAGGCTTCA 60.733 61.111 5.77 0.00 0.00 3.02
443 446 0.250553 TTGGGTGGTTCTTGCCTACG 60.251 55.000 0.00 0.00 0.00 3.51
448 451 0.037590 TGGTTCTTGCCTACGCCAAT 59.962 50.000 0.00 0.00 0.00 3.16
463 466 5.880054 ACGCCAATATATACTTTGATGCC 57.120 39.130 0.00 0.00 0.00 4.40
482 485 3.266636 GCCGATTTTGGGGTTATTTTGG 58.733 45.455 0.00 0.00 0.00 3.28
488 491 3.477210 TTGGGGTTATTTTGGTGCAAC 57.523 42.857 0.00 0.00 0.00 4.17
509 512 2.357050 CCTGCCCACTTGATCCATACAA 60.357 50.000 0.00 0.00 0.00 2.41
574 580 4.884247 TCCCGTTCTTCTTCTTCTTCTTC 58.116 43.478 0.00 0.00 0.00 2.87
576 582 5.070580 TCCCGTTCTTCTTCTTCTTCTTCTT 59.929 40.000 0.00 0.00 0.00 2.52
579 585 6.704050 CCGTTCTTCTTCTTCTTCTTCTTCTT 59.296 38.462 0.00 0.00 0.00 2.52
580 586 7.095816 CCGTTCTTCTTCTTCTTCTTCTTCTTC 60.096 40.741 0.00 0.00 0.00 2.87
581 587 7.651704 CGTTCTTCTTCTTCTTCTTCTTCTTCT 59.348 37.037 0.00 0.00 0.00 2.85
583 589 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
584 590 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
585 591 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
587 593 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
588 594 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
589 595 9.898152 TTCTTCTTCTTCTTCTTCTTCTTCTTT 57.102 29.630 0.00 0.00 0.00 2.52
590 596 9.898152 TCTTCTTCTTCTTCTTCTTCTTCTTTT 57.102 29.630 0.00 0.00 0.00 2.27
592 598 8.669946 TCTTCTTCTTCTTCTTCTTCTTTTCC 57.330 34.615 0.00 0.00 0.00 3.13
594 600 6.817184 TCTTCTTCTTCTTCTTCTTTTCCGA 58.183 36.000 0.00 0.00 0.00 4.55
595 601 6.926272 TCTTCTTCTTCTTCTTCTTTTCCGAG 59.074 38.462 0.00 0.00 0.00 4.63
596 602 6.163135 TCTTCTTCTTCTTCTTTTCCGAGT 57.837 37.500 0.00 0.00 0.00 4.18
597 603 5.986135 TCTTCTTCTTCTTCTTTTCCGAGTG 59.014 40.000 0.00 0.00 0.00 3.51
598 604 4.632153 TCTTCTTCTTCTTTTCCGAGTGG 58.368 43.478 0.00 0.00 0.00 4.00
609 615 2.740055 CGAGTGGGTGCAGTGCTC 60.740 66.667 17.60 13.00 0.00 4.26
620 626 2.203788 AGTGCTCCCTTCCGGTCA 60.204 61.111 0.00 0.00 0.00 4.02
641 649 1.379527 AAGAAACGATGCCGGAATCC 58.620 50.000 17.30 2.42 40.78 3.01
645 653 2.031163 CGATGCCGGAATCCTCCC 59.969 66.667 17.30 0.00 38.71 4.30
670 678 0.803117 CGGCTACACTTCTCGTCTGA 59.197 55.000 0.00 0.00 0.00 3.27
692 707 6.051717 TGAATCCTAATCTAGCTCAACTTGC 58.948 40.000 0.00 0.00 0.00 4.01
713 728 4.941263 TGCATCTGTTTAACAGGGACATAC 59.059 41.667 22.82 6.54 45.94 2.39
719 734 4.224370 TGTTTAACAGGGACATACTCCTCC 59.776 45.833 0.00 0.00 39.39 4.30
730 745 0.817654 TACTCCTCCATCACACAGCG 59.182 55.000 0.00 0.00 0.00 5.18
737 752 2.433145 ATCACACAGCGTGGCGAG 60.433 61.111 12.18 1.72 46.36 5.03
739 754 3.406361 CACACAGCGTGGCGAGTC 61.406 66.667 12.18 0.00 42.34 3.36
740 755 4.664677 ACACAGCGTGGCGAGTCC 62.665 66.667 12.18 0.00 37.94 3.85
741 756 4.662961 CACAGCGTGGCGAGTCCA 62.663 66.667 0.00 0.00 44.18 4.02
757 787 0.105593 TCCAGATTCCGCTGAGATGC 59.894 55.000 0.00 0.00 38.14 3.91
760 790 0.179062 AGATTCCGCTGAGATGCCAC 60.179 55.000 0.00 0.00 0.00 5.01
782 812 4.496927 GCCCCATTGAAAGCGCCG 62.497 66.667 2.29 0.00 0.00 6.46
824 854 3.538634 GTGGTATACTCAAGGTCCACC 57.461 52.381 2.25 0.00 39.25 4.61
858 888 3.295386 TTCCCTTGCAATCCCGGGG 62.295 63.158 23.50 16.11 37.30 5.73
898 928 3.047877 CCACCAGAACGAACGCCC 61.048 66.667 0.00 0.00 0.00 6.13
899 929 3.411351 CACCAGAACGAACGCCCG 61.411 66.667 0.00 0.00 0.00 6.13
974 1076 2.034878 CACTCTTGATCGATCAGGGGA 58.965 52.381 35.94 26.58 36.56 4.81
976 1078 2.034878 CTCTTGATCGATCAGGGGACA 58.965 52.381 28.43 12.59 36.56 4.02
977 1079 1.757118 TCTTGATCGATCAGGGGACAC 59.243 52.381 30.29 3.12 38.19 3.67
994 1101 2.583593 CGGCCGTCTAGCAGCTTC 60.584 66.667 19.50 0.00 0.00 3.86
1383 1496 3.551496 CTCGGTGCAGGGGCTCAAA 62.551 63.158 0.00 0.00 41.91 2.69
1530 1646 4.465512 GACGACCGCGCGTTCCTA 62.466 66.667 29.95 0.00 45.72 2.94
1545 1661 2.107141 CTAAAGAGGGCCGGCGAG 59.893 66.667 22.54 4.66 0.00 5.03
1617 1733 1.417288 GGAGGCTGATGGAGATGGCT 61.417 60.000 0.00 0.00 38.03 4.75
1629 1745 4.467084 ATGGCTGTGTACCGCCCG 62.467 66.667 13.75 0.00 45.71 6.13
1695 1811 1.952133 GGTGCGTGCGTGTACAGAA 60.952 57.895 0.00 0.00 0.00 3.02
1696 1812 1.200839 GTGCGTGCGTGTACAGAAC 59.799 57.895 0.00 0.00 0.00 3.01
1697 1813 1.066752 TGCGTGCGTGTACAGAACT 59.933 52.632 0.00 0.00 0.00 3.01
1698 1814 0.311477 TGCGTGCGTGTACAGAACTA 59.689 50.000 0.00 0.00 0.00 2.24
1699 1815 0.706729 GCGTGCGTGTACAGAACTAC 59.293 55.000 0.00 0.00 0.00 2.73
1700 1816 1.927268 GCGTGCGTGTACAGAACTACA 60.927 52.381 0.00 0.00 0.00 2.74
1701 1817 1.976728 CGTGCGTGTACAGAACTACAG 59.023 52.381 0.00 0.00 0.00 2.74
1702 1818 2.350102 CGTGCGTGTACAGAACTACAGA 60.350 50.000 0.00 0.00 0.00 3.41
1712 1828 3.324846 ACAGAACTACAGATGCCACTTGA 59.675 43.478 0.00 0.00 0.00 3.02
1744 1860 3.129287 AGCCGCCATCTTTTATTTGTCAG 59.871 43.478 0.00 0.00 0.00 3.51
1747 1863 5.335127 CCGCCATCTTTTATTTGTCAGAAG 58.665 41.667 0.00 0.00 0.00 2.85
1761 1877 2.147387 AGAAGGTGACCAACGGCCT 61.147 57.895 3.63 0.00 0.00 5.19
1763 1879 4.643387 AGGTGACCAACGGCCTGC 62.643 66.667 3.63 0.00 0.00 4.85
1766 1882 2.594303 TGACCAACGGCCTGCAAG 60.594 61.111 0.00 0.00 0.00 4.01
1767 1883 2.594592 GACCAACGGCCTGCAAGT 60.595 61.111 0.00 0.00 0.00 3.16
1768 1884 2.594592 ACCAACGGCCTGCAAGTC 60.595 61.111 0.00 0.00 0.00 3.01
1770 1886 1.973281 CCAACGGCCTGCAAGTCAT 60.973 57.895 0.00 0.00 0.00 3.06
1771 1887 1.526575 CCAACGGCCTGCAAGTCATT 61.527 55.000 0.00 0.00 0.00 2.57
1775 1891 2.017049 ACGGCCTGCAAGTCATTATTC 58.983 47.619 0.00 0.00 0.00 1.75
1776 1892 2.292267 CGGCCTGCAAGTCATTATTCT 58.708 47.619 0.00 0.00 0.00 2.40
1777 1893 2.684881 CGGCCTGCAAGTCATTATTCTT 59.315 45.455 0.00 0.00 0.00 2.52
1780 1896 5.504665 CGGCCTGCAAGTCATTATTCTTTAG 60.505 44.000 0.00 0.00 0.00 1.85
1781 1897 5.358160 GGCCTGCAAGTCATTATTCTTTAGT 59.642 40.000 0.00 0.00 0.00 2.24
1782 1898 6.458888 GGCCTGCAAGTCATTATTCTTTAGTC 60.459 42.308 0.00 0.00 0.00 2.59
1783 1899 6.094048 GCCTGCAAGTCATTATTCTTTAGTCA 59.906 38.462 0.00 0.00 0.00 3.41
1784 1900 7.201767 GCCTGCAAGTCATTATTCTTTAGTCAT 60.202 37.037 0.00 0.00 0.00 3.06
1786 1902 8.791327 TGCAAGTCATTATTCTTTAGTCATCA 57.209 30.769 0.00 0.00 0.00 3.07
1787 1903 9.399797 TGCAAGTCATTATTCTTTAGTCATCAT 57.600 29.630 0.00 0.00 0.00 2.45
1799 2518 2.558378 AGTCATCATCGGTCTGCATTG 58.442 47.619 0.00 0.00 0.00 2.82
1846 2567 7.530010 AGGAGTGATAATTCAACATTTCAACG 58.470 34.615 0.00 0.00 32.48 4.10
1853 2574 8.879342 ATAATTCAACATTTCAACGTTTTCCA 57.121 26.923 0.00 0.00 0.00 3.53
1862 2584 7.122650 ACATTTCAACGTTTTCCATATGAGGAT 59.877 33.333 3.65 0.00 37.56 3.24
1868 2590 7.125792 ACGTTTTCCATATGAGGATAACTCT 57.874 36.000 3.65 0.00 46.72 3.24
1887 2612 4.890581 ACTCTAGTTACCGAAGATGAGCAT 59.109 41.667 0.00 0.00 0.00 3.79
1888 2613 5.188327 TCTAGTTACCGAAGATGAGCATG 57.812 43.478 0.00 0.00 0.00 4.06
1911 2636 9.865321 CATGTGTTGATCTAAAAATCTTCCAAT 57.135 29.630 0.00 0.00 0.00 3.16
1913 2638 8.522830 TGTGTTGATCTAAAAATCTTCCAATCC 58.477 33.333 0.00 0.00 0.00 3.01
1914 2639 8.522830 GTGTTGATCTAAAAATCTTCCAATCCA 58.477 33.333 0.00 0.00 0.00 3.41
1915 2640 9.087871 TGTTGATCTAAAAATCTTCCAATCCAA 57.912 29.630 0.00 0.00 0.00 3.53
1919 2644 9.927668 GATCTAAAAATCTTCCAATCCAAAACA 57.072 29.630 0.00 0.00 0.00 2.83
2019 2759 2.172483 CTGAACCTGACACCTCCCGG 62.172 65.000 0.00 0.00 0.00 5.73
2020 2760 3.607370 GAACCTGACACCTCCCGGC 62.607 68.421 0.00 0.00 0.00 6.13
2021 2761 4.640690 ACCTGACACCTCCCGGCT 62.641 66.667 0.00 0.00 0.00 5.52
2022 2762 3.775654 CCTGACACCTCCCGGCTC 61.776 72.222 0.00 0.00 0.00 4.70
2023 2763 3.775654 CTGACACCTCCCGGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
2038 2778 1.322538 GCTCCCGCCCAACAATCAAT 61.323 55.000 0.00 0.00 0.00 2.57
2039 2779 0.740737 CTCCCGCCCAACAATCAATC 59.259 55.000 0.00 0.00 0.00 2.67
2040 2780 0.038890 TCCCGCCCAACAATCAATCA 59.961 50.000 0.00 0.00 0.00 2.57
2041 2781 0.894141 CCCGCCCAACAATCAATCAA 59.106 50.000 0.00 0.00 0.00 2.57
2043 2783 2.093553 CCCGCCCAACAATCAATCAAAT 60.094 45.455 0.00 0.00 0.00 2.32
2044 2784 3.189285 CCGCCCAACAATCAATCAAATC 58.811 45.455 0.00 0.00 0.00 2.17
2048 2788 5.392919 CGCCCAACAATCAATCAAATCAGTA 60.393 40.000 0.00 0.00 0.00 2.74
2135 2880 2.093764 ACTCCTACAGCACTGAATCAGC 60.094 50.000 10.62 0.00 34.37 4.26
2173 2918 3.057526 GTGCCCGTGCTCTTATTTTTCTT 60.058 43.478 0.00 0.00 38.71 2.52
2174 2919 3.190535 TGCCCGTGCTCTTATTTTTCTTC 59.809 43.478 0.00 0.00 38.71 2.87
2175 2920 3.427638 GCCCGTGCTCTTATTTTTCTTCC 60.428 47.826 0.00 0.00 33.53 3.46
2176 2921 3.128764 CCCGTGCTCTTATTTTTCTTCCC 59.871 47.826 0.00 0.00 0.00 3.97
2213 2958 1.414061 ATGGGATCCTCCAAGCTCCG 61.414 60.000 12.58 0.00 40.62 4.63
2231 2976 2.639286 GCACGGCAACTTCACCTG 59.361 61.111 0.00 0.00 0.00 4.00
2256 3001 4.875544 TTCAGCTGTGTAACTGTGTTTC 57.124 40.909 14.67 0.00 38.15 2.78
2288 3094 1.906990 GGCAGTAGAGCCGGTAGATA 58.093 55.000 1.90 0.00 46.12 1.98
2289 3095 1.813786 GGCAGTAGAGCCGGTAGATAG 59.186 57.143 1.90 0.00 46.12 2.08
2290 3096 2.552591 GGCAGTAGAGCCGGTAGATAGA 60.553 54.545 1.90 0.00 46.12 1.98
2291 3097 3.349022 GCAGTAGAGCCGGTAGATAGAT 58.651 50.000 1.90 0.00 0.00 1.98
2296 3102 6.092944 CAGTAGAGCCGGTAGATAGATGTAAG 59.907 46.154 1.90 0.00 0.00 2.34
2300 3106 4.528596 AGCCGGTAGATAGATGTAAGCAAT 59.471 41.667 1.90 0.00 0.00 3.56
2313 3119 5.244785 TGTAAGCAATAGTAGGACTGTCG 57.755 43.478 1.07 0.00 0.00 4.35
2314 3120 4.703575 TGTAAGCAATAGTAGGACTGTCGT 59.296 41.667 8.19 8.19 0.00 4.34
2337 5169 3.048600 CCTTGGGGGACATCAGATAAGA 58.951 50.000 0.00 0.00 37.23 2.10
2436 5268 3.564133 CCCATCTTTTCAAGGGGATCACA 60.564 47.826 0.00 0.00 41.49 3.58
2480 5312 5.023452 AGTCACACCATTGTCTCAGGTATA 58.977 41.667 0.00 0.00 31.66 1.47
2481 5313 5.105310 AGTCACACCATTGTCTCAGGTATAC 60.105 44.000 0.00 0.00 31.66 1.47
2484 5316 5.127845 CACACCATTGTCTCAGGTATACTCT 59.872 44.000 2.25 0.00 31.66 3.24
2485 5317 5.361285 ACACCATTGTCTCAGGTATACTCTC 59.639 44.000 2.25 0.00 33.49 3.20
2486 5318 5.596361 CACCATTGTCTCAGGTATACTCTCT 59.404 44.000 2.25 0.00 33.49 3.10
2487 5319 6.773200 CACCATTGTCTCAGGTATACTCTCTA 59.227 42.308 2.25 0.00 33.49 2.43
2488 5320 7.450014 CACCATTGTCTCAGGTATACTCTCTAT 59.550 40.741 2.25 0.00 33.49 1.98
2490 5322 8.865090 CCATTGTCTCAGGTATACTCTCTATTT 58.135 37.037 2.25 0.00 0.00 1.40
2491 5323 9.906660 CATTGTCTCAGGTATACTCTCTATTTC 57.093 37.037 2.25 0.00 0.00 2.17
2492 5324 9.647918 ATTGTCTCAGGTATACTCTCTATTTCA 57.352 33.333 2.25 0.00 0.00 2.69
2493 5325 9.475620 TTGTCTCAGGTATACTCTCTATTTCAA 57.524 33.333 2.25 0.00 0.00 2.69
2494 5326 9.647918 TGTCTCAGGTATACTCTCTATTTCAAT 57.352 33.333 2.25 0.00 0.00 2.57
2495 5327 9.906660 GTCTCAGGTATACTCTCTATTTCAATG 57.093 37.037 2.25 0.00 0.00 2.82
2496 5328 9.647918 TCTCAGGTATACTCTCTATTTCAATGT 57.352 33.333 2.25 0.00 0.00 2.71
2497 5329 9.689976 CTCAGGTATACTCTCTATTTCAATGTG 57.310 37.037 2.25 0.00 0.00 3.21
2498 5330 8.144478 TCAGGTATACTCTCTATTTCAATGTGC 58.856 37.037 2.25 0.00 0.00 4.57
2538 5373 4.452455 CCAACGCATTTACTGAAACTCTCT 59.548 41.667 0.00 0.00 0.00 3.10
2563 5401 5.061179 GTCTCAGCTAACCTTTTTACCACA 58.939 41.667 0.00 0.00 0.00 4.17
2576 5414 7.602265 ACCTTTTTACCACATTGTATGCATTTC 59.398 33.333 3.54 0.00 0.00 2.17
2598 5436 3.928727 ATGCAGGAAGTGTTGATTGTG 57.071 42.857 0.00 0.00 0.00 3.33
2626 5464 1.782028 GCACGACCAGTTGTTCCCAC 61.782 60.000 0.00 0.00 0.00 4.61
2693 5531 2.034124 CCCTCCGTCCGGAAATACTTA 58.966 52.381 5.23 0.00 44.66 2.24
2727 5565 7.246171 TGGATAAAAGGAGATGTATCTAGGC 57.754 40.000 0.00 0.00 37.25 3.93
2750 5588 8.857098 AGGCGTATTTTAGTTCTAGATACATCA 58.143 33.333 0.00 0.00 0.00 3.07
2791 5629 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2842 6244 5.964887 TTTACCGCGTGTGGTATATTTAC 57.035 39.130 12.73 0.00 43.77 2.01
2843 6245 3.806625 ACCGCGTGTGGTATATTTACT 57.193 42.857 4.92 0.00 41.55 2.24
2844 6246 4.127566 ACCGCGTGTGGTATATTTACTT 57.872 40.909 4.92 0.00 41.55 2.24
2848 6250 6.039270 ACCGCGTGTGGTATATTTACTTACTA 59.961 38.462 4.92 0.00 41.55 1.82
2872 6274 4.082125 GTTTCCTTCATGATCAGGTGGTT 58.918 43.478 12.27 0.00 0.00 3.67
2882 6286 3.631686 TGATCAGGTGGTTTCAGTTTGTG 59.368 43.478 0.00 0.00 0.00 3.33
2965 6418 3.358111 TCATCAAGAAAACGGGCCATA 57.642 42.857 4.39 0.00 0.00 2.74
3009 6462 2.414559 CCGGTTCAACAACATCATGCTC 60.415 50.000 0.00 0.00 33.70 4.26
3025 6478 1.294659 GCTCGACTTCTTGGTGGCTG 61.295 60.000 0.00 0.00 0.00 4.85
3026 6479 1.294659 CTCGACTTCTTGGTGGCTGC 61.295 60.000 0.00 0.00 0.00 5.25
3027 6480 2.671177 CGACTTCTTGGTGGCTGCG 61.671 63.158 0.00 0.00 0.00 5.18
3028 6481 2.281761 ACTTCTTGGTGGCTGCGG 60.282 61.111 0.00 0.00 0.00 5.69
3029 6482 2.032528 CTTCTTGGTGGCTGCGGA 59.967 61.111 0.00 0.00 0.00 5.54
3030 6483 2.281484 TTCTTGGTGGCTGCGGAC 60.281 61.111 0.00 0.00 0.00 4.79
3031 6484 3.113514 TTCTTGGTGGCTGCGGACA 62.114 57.895 0.00 0.00 0.00 4.02
3032 6485 2.594303 CTTGGTGGCTGCGGACAA 60.594 61.111 0.22 0.00 29.01 3.18
3033 6486 2.594303 TTGGTGGCTGCGGACAAG 60.594 61.111 0.22 0.00 29.01 3.16
3088 6541 0.035881 ATGAGATGCATAGCCACCCG 59.964 55.000 0.00 0.00 34.82 5.28
3101 6554 1.330655 CCACCCGCTACTCCACTGAT 61.331 60.000 0.00 0.00 0.00 2.90
3115 6568 7.472334 ACTCCACTGATTTGCAATAAGATTT 57.528 32.000 0.00 0.00 0.00 2.17
3145 6598 0.031917 TGGGCCCATGCATTCAGAAT 60.032 50.000 24.45 0.00 40.13 2.40
3147 6600 1.202604 GGGCCCATGCATTCAGAATTG 60.203 52.381 19.95 0.00 40.13 2.32
3149 6602 2.093341 GGCCCATGCATTCAGAATTGTT 60.093 45.455 0.00 0.00 40.13 2.83
3150 6603 2.933906 GCCCATGCATTCAGAATTGTTG 59.066 45.455 0.00 0.00 37.47 3.33
3201 6655 7.343833 AGGGTCTATTTGATTTGCATGATTCTT 59.656 33.333 0.00 0.00 0.00 2.52
3224 6678 2.654749 TGCAGGATTAGAGTGTCACG 57.345 50.000 0.00 0.00 0.00 4.35
3232 6686 5.186021 AGGATTAGAGTGTCACGTCATCTTT 59.814 40.000 0.00 0.00 0.00 2.52
3324 6787 7.491372 TGCTTCTATGAAATCTAACGTAACTGG 59.509 37.037 0.00 0.00 0.00 4.00
3327 6790 9.529325 TTCTATGAAATCTAACGTAACTGGATG 57.471 33.333 0.00 0.00 0.00 3.51
3339 6802 7.272037 ACGTAACTGGATGTCAAAGAAAAAT 57.728 32.000 0.00 0.00 0.00 1.82
3340 6803 7.360361 ACGTAACTGGATGTCAAAGAAAAATC 58.640 34.615 0.00 0.00 0.00 2.17
3349 6812 6.647334 TGTCAAAGAAAAATCAGCATGGTA 57.353 33.333 0.00 0.00 36.16 3.25
3387 7625 1.815421 CCTCCGGACCTTTGCATCG 60.815 63.158 0.00 0.00 0.00 3.84
3388 7626 2.435938 TCCGGACCTTTGCATCGC 60.436 61.111 0.00 0.00 0.00 4.58
3443 7955 2.619646 GGTAAGGCAACGAGACCAAAAA 59.380 45.455 0.00 0.00 46.39 1.94
3450 7962 4.226761 GCAACGAGACCAAAAATACCTTG 58.773 43.478 0.00 0.00 0.00 3.61
3500 8012 7.907214 AGTAGACACATTACAAGATTTGACC 57.093 36.000 0.00 0.00 0.00 4.02
3515 8027 3.713858 TTGACCAAAAGACACATGCAG 57.286 42.857 0.00 0.00 0.00 4.41
3524 8036 1.002366 GACACATGCAGCTAAGTCGG 58.998 55.000 0.00 0.00 0.00 4.79
3562 8074 3.923017 CTTGAAAAGGGATGACACACC 57.077 47.619 0.00 0.00 41.27 4.16
3575 8087 1.063972 CACACCTGTGCCAACGTTG 59.936 57.895 21.47 21.47 39.39 4.10
3582 8094 1.263217 CTGTGCCAACGTTGTAGGAAC 59.737 52.381 25.63 16.21 0.00 3.62
3584 8096 0.881159 TGCCAACGTTGTAGGAACGG 60.881 55.000 25.63 9.89 46.86 4.44
3585 8097 0.881600 GCCAACGTTGTAGGAACGGT 60.882 55.000 25.63 1.72 45.37 4.83
3593 8105 5.240121 ACGTTGTAGGAACGGTGATAAATT 58.760 37.500 11.27 0.00 46.86 1.82
3594 8106 5.349543 ACGTTGTAGGAACGGTGATAAATTC 59.650 40.000 11.27 0.00 46.86 2.17
3596 8108 6.455113 CGTTGTAGGAACGGTGATAAATTCAG 60.455 42.308 0.00 0.00 39.73 3.02
3610 8122 8.006027 GTGATAAATTCAGCAAGTTTCAAAAGC 58.994 33.333 0.00 0.00 34.17 3.51
3611 8123 7.710044 TGATAAATTCAGCAAGTTTCAAAAGCA 59.290 29.630 0.00 0.00 0.00 3.91
3615 8127 5.529014 TCAGCAAGTTTCAAAAGCAAAAC 57.471 34.783 0.00 0.00 35.97 2.43
3616 8128 5.237048 TCAGCAAGTTTCAAAAGCAAAACT 58.763 33.333 0.00 0.00 45.21 2.66
3643 8163 3.653352 CCCTAAGCTCTAAGCCCCTAAAT 59.347 47.826 0.00 0.00 43.77 1.40
3649 8169 3.632604 GCTCTAAGCCCCTAAATCCAAAC 59.367 47.826 0.00 0.00 34.48 2.93
3672 8198 0.189822 AAAGCCCTAAGCCCCAAACA 59.810 50.000 0.00 0.00 45.47 2.83
3675 8201 0.541998 GCCCTAAGCCCCAAACACTT 60.542 55.000 0.00 0.00 34.35 3.16
3676 8202 1.256812 CCCTAAGCCCCAAACACTTG 58.743 55.000 0.00 0.00 0.00 3.16
3678 8204 2.557452 CCCTAAGCCCCAAACACTTGAT 60.557 50.000 0.00 0.00 34.14 2.57
3688 8214 4.280677 CCCAAACACTTGATCCTAAAAGCA 59.719 41.667 0.00 0.00 34.14 3.91
3692 8218 7.095523 CCAAACACTTGATCCTAAAAGCAAATG 60.096 37.037 0.00 0.00 34.14 2.32
3702 8228 6.279882 TCCTAAAAGCAAATGAAACTTGGTG 58.720 36.000 0.00 0.00 0.00 4.17
3798 8331 9.598517 AATTTAAAAGTTGTCAGAATGCTTTCA 57.401 25.926 14.15 0.00 34.76 2.69
3820 8354 6.001460 TCAAAATTGGTCTTGTCGAAGGTAT 58.999 36.000 0.00 0.00 0.00 2.73
3847 8381 4.620609 TCGCAACAAACATGAATATGCAAC 59.379 37.500 0.00 0.00 37.85 4.17
3852 8388 7.148540 GCAACAAACATGAATATGCAACAATCT 60.149 33.333 0.00 0.00 37.85 2.40
3855 8391 8.089597 ACAAACATGAATATGCAACAATCTTGA 58.910 29.630 0.00 0.00 37.85 3.02
3859 8395 9.093970 ACATGAATATGCAACAATCTTGATTTG 57.906 29.630 0.00 0.00 37.85 2.32
3871 8407 7.205297 ACAATCTTGATTTGGACTTTCAGTTG 58.795 34.615 0.00 0.00 0.00 3.16
3880 8416 9.617975 GATTTGGACTTTCAGTTGAAAAGATAG 57.382 33.333 8.48 0.00 42.72 2.08
3885 8421 9.145865 GGACTTTCAGTTGAAAAGATAGACTAG 57.854 37.037 8.48 0.00 42.72 2.57
3924 8460 4.527816 TGAATTGAAAAGGAATGGGAGGTG 59.472 41.667 0.00 0.00 0.00 4.00
3925 8461 2.603075 TGAAAAGGAATGGGAGGTGG 57.397 50.000 0.00 0.00 0.00 4.61
3926 8462 1.186200 GAAAAGGAATGGGAGGTGGC 58.814 55.000 0.00 0.00 0.00 5.01
3927 8463 0.486879 AAAAGGAATGGGAGGTGGCA 59.513 50.000 0.00 0.00 0.00 4.92
3930 8466 1.217057 AGGAATGGGAGGTGGCATGT 61.217 55.000 0.00 0.00 0.00 3.21
3967 8503 1.335780 TGCTAAAAGTTGCACGCATGG 60.336 47.619 0.00 0.00 33.94 3.66
3968 8504 1.981254 CTAAAAGTTGCACGCATGGG 58.019 50.000 8.44 8.44 0.00 4.00
3975 8511 2.832661 GCACGCATGGGCCCATTA 60.833 61.111 35.69 9.11 36.38 1.90
3993 8529 5.765182 CCCATTAGTGGTGATTAAAGGCTAG 59.235 44.000 3.28 0.00 44.48 3.42
3999 8535 5.001232 GTGGTGATTAAAGGCTAGAACACA 58.999 41.667 0.00 2.01 0.00 3.72
4005 8541 6.377996 TGATTAAAGGCTAGAACACATGCAAT 59.622 34.615 0.00 0.00 0.00 3.56
4007 8543 4.445452 AAGGCTAGAACACATGCAATTG 57.555 40.909 0.00 0.00 0.00 2.32
4019 8555 5.767665 ACACATGCAATTGACCAAACTACTA 59.232 36.000 10.34 0.00 0.00 1.82
4023 8559 6.656314 TGCAATTGACCAAACTACTATACG 57.344 37.500 10.34 0.00 0.00 3.06
4027 8563 8.062448 GCAATTGACCAAACTACTATACGAATC 58.938 37.037 10.34 0.00 0.00 2.52
4029 8565 9.530633 AATTGACCAAACTACTATACGAATCTC 57.469 33.333 0.00 0.00 0.00 2.75
4030 8566 6.722301 TGACCAAACTACTATACGAATCTCG 58.278 40.000 0.00 0.00 46.93 4.04
4031 8567 6.539826 TGACCAAACTACTATACGAATCTCGA 59.460 38.462 2.59 0.00 43.74 4.04
4032 8568 7.228108 TGACCAAACTACTATACGAATCTCGAT 59.772 37.037 2.59 0.00 43.74 3.59
4033 8569 7.361127 ACCAAACTACTATACGAATCTCGATG 58.639 38.462 2.59 0.00 43.74 3.84
4034 8570 6.305877 CCAAACTACTATACGAATCTCGATGC 59.694 42.308 2.59 0.00 43.74 3.91
4037 8573 6.967135 ACTACTATACGAATCTCGATGCAAA 58.033 36.000 2.59 0.00 43.74 3.68
4038 8574 7.594714 ACTACTATACGAATCTCGATGCAAAT 58.405 34.615 2.59 0.00 43.74 2.32
4040 8576 4.997905 ATACGAATCTCGATGCAAATGG 57.002 40.909 2.59 0.00 43.74 3.16
4042 8578 1.942657 CGAATCTCGATGCAAATGGGT 59.057 47.619 0.00 0.00 43.74 4.51
4043 8579 2.286595 CGAATCTCGATGCAAATGGGTG 60.287 50.000 0.00 0.00 43.74 4.61
4044 8580 1.683943 ATCTCGATGCAAATGGGTGG 58.316 50.000 0.00 0.00 0.00 4.61
4045 8581 0.327924 TCTCGATGCAAATGGGTGGT 59.672 50.000 0.00 0.00 0.00 4.16
4046 8582 1.176527 CTCGATGCAAATGGGTGGTT 58.823 50.000 0.00 0.00 0.00 3.67
4050 8586 2.048316 GCAAATGGGTGGTTGCGG 60.048 61.111 0.00 0.00 40.62 5.69
4051 8587 2.048316 CAAATGGGTGGTTGCGGC 60.048 61.111 0.00 0.00 0.00 6.53
4053 8589 2.136878 AAATGGGTGGTTGCGGCAA 61.137 52.632 12.11 12.11 0.00 4.52
4054 8590 1.690219 AAATGGGTGGTTGCGGCAAA 61.690 50.000 18.23 0.00 0.00 3.68
4055 8591 2.098426 AATGGGTGGTTGCGGCAAAG 62.098 55.000 18.23 0.00 0.00 2.77
4058 8595 2.050077 GTGGTTGCGGCAAAGCTC 60.050 61.111 18.23 4.68 38.13 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.185680 GGAGTAATCCCATGTGTAAAAACTAAT 57.814 33.333 0.00 0.00 0.00 1.73
25 26 8.387813 AGGAGTAATCCCATGTGTAAAAACTAA 58.612 33.333 5.39 0.00 0.00 2.24
26 27 7.827236 CAGGAGTAATCCCATGTGTAAAAACTA 59.173 37.037 5.39 0.00 0.00 2.24
27 28 6.659242 CAGGAGTAATCCCATGTGTAAAAACT 59.341 38.462 5.39 0.00 0.00 2.66
28 29 6.625081 GCAGGAGTAATCCCATGTGTAAAAAC 60.625 42.308 5.39 0.00 0.00 2.43
29 30 5.417580 GCAGGAGTAATCCCATGTGTAAAAA 59.582 40.000 5.39 0.00 0.00 1.94
30 31 4.947388 GCAGGAGTAATCCCATGTGTAAAA 59.053 41.667 5.39 0.00 0.00 1.52
31 32 4.018870 TGCAGGAGTAATCCCATGTGTAAA 60.019 41.667 5.39 0.00 0.00 2.01
32 33 3.521531 TGCAGGAGTAATCCCATGTGTAA 59.478 43.478 5.39 0.00 0.00 2.41
33 34 3.111484 TGCAGGAGTAATCCCATGTGTA 58.889 45.455 5.39 0.00 0.00 2.90
34 35 1.915489 TGCAGGAGTAATCCCATGTGT 59.085 47.619 5.39 0.00 0.00 3.72
35 36 2.715749 TGCAGGAGTAATCCCATGTG 57.284 50.000 5.39 0.00 0.00 3.21
36 37 2.158564 CCATGCAGGAGTAATCCCATGT 60.159 50.000 20.13 0.00 41.22 3.21
37 38 2.511659 CCATGCAGGAGTAATCCCATG 58.488 52.381 16.87 16.87 41.22 3.66
38 39 1.426598 CCCATGCAGGAGTAATCCCAT 59.573 52.381 5.39 0.10 41.22 4.00
39 40 0.846015 CCCATGCAGGAGTAATCCCA 59.154 55.000 5.39 0.00 41.22 4.37
40 41 0.846693 ACCCATGCAGGAGTAATCCC 59.153 55.000 5.39 0.00 41.22 3.85
41 42 1.490490 TGACCCATGCAGGAGTAATCC 59.510 52.381 0.00 0.00 41.22 3.01
42 43 3.281727 TTGACCCATGCAGGAGTAATC 57.718 47.619 0.00 0.00 41.22 1.75
43 44 3.202818 TGATTGACCCATGCAGGAGTAAT 59.797 43.478 0.00 0.00 41.22 1.89
44 45 2.575735 TGATTGACCCATGCAGGAGTAA 59.424 45.455 0.00 0.00 41.22 2.24
45 46 2.092968 GTGATTGACCCATGCAGGAGTA 60.093 50.000 0.00 0.00 41.22 2.59
46 47 0.994247 TGATTGACCCATGCAGGAGT 59.006 50.000 0.00 0.00 41.22 3.85
47 48 1.340308 TGTGATTGACCCATGCAGGAG 60.340 52.381 0.00 0.00 41.22 3.69
48 49 0.697658 TGTGATTGACCCATGCAGGA 59.302 50.000 0.00 0.00 41.22 3.86
49 50 1.203052 GTTGTGATTGACCCATGCAGG 59.797 52.381 0.00 0.00 37.03 4.85
50 51 1.887854 TGTTGTGATTGACCCATGCAG 59.112 47.619 0.00 0.00 0.00 4.41
51 52 1.887854 CTGTTGTGATTGACCCATGCA 59.112 47.619 0.00 0.00 0.00 3.96
52 53 1.203052 CCTGTTGTGATTGACCCATGC 59.797 52.381 0.00 0.00 0.00 4.06
53 54 2.517959 ACCTGTTGTGATTGACCCATG 58.482 47.619 0.00 0.00 0.00 3.66
54 55 2.978156 ACCTGTTGTGATTGACCCAT 57.022 45.000 0.00 0.00 0.00 4.00
65 66 6.312672 GCATTTTCTTACAAAACACCTGTTGT 59.687 34.615 0.00 0.00 41.74 3.32
66 67 6.312426 TGCATTTTCTTACAAAACACCTGTTG 59.688 34.615 0.00 0.00 38.44 3.33
67 68 6.402222 TGCATTTTCTTACAAAACACCTGTT 58.598 32.000 0.00 0.00 40.50 3.16
68 69 5.971763 TGCATTTTCTTACAAAACACCTGT 58.028 33.333 0.00 0.00 0.00 4.00
69 70 6.925165 AGATGCATTTTCTTACAAAACACCTG 59.075 34.615 0.00 0.00 0.00 4.00
70 71 7.054491 AGATGCATTTTCTTACAAAACACCT 57.946 32.000 0.00 0.00 0.00 4.00
71 72 7.437862 TGAAGATGCATTTTCTTACAAAACACC 59.562 33.333 25.28 1.57 33.65 4.16
72 73 8.351495 TGAAGATGCATTTTCTTACAAAACAC 57.649 30.769 25.28 3.04 33.65 3.32
73 74 8.980610 CATGAAGATGCATTTTCTTACAAAACA 58.019 29.630 25.28 8.96 33.65 2.83
74 75 8.981647 ACATGAAGATGCATTTTCTTACAAAAC 58.018 29.630 25.28 4.24 33.65 2.43
75 76 9.545105 AACATGAAGATGCATTTTCTTACAAAA 57.455 25.926 25.28 8.49 33.65 2.44
76 77 9.195411 GAACATGAAGATGCATTTTCTTACAAA 57.805 29.630 25.28 9.11 34.02 2.83
77 78 7.814107 GGAACATGAAGATGCATTTTCTTACAA 59.186 33.333 25.28 9.73 36.01 2.41
78 79 7.315142 GGAACATGAAGATGCATTTTCTTACA 58.685 34.615 25.28 14.09 36.01 2.41
79 80 6.470235 CGGAACATGAAGATGCATTTTCTTAC 59.530 38.462 25.28 14.28 36.01 2.34
80 81 6.150976 ACGGAACATGAAGATGCATTTTCTTA 59.849 34.615 25.28 10.99 36.01 2.10
81 82 5.047802 ACGGAACATGAAGATGCATTTTCTT 60.048 36.000 25.28 18.48 36.01 2.52
82 83 4.460382 ACGGAACATGAAGATGCATTTTCT 59.540 37.500 25.28 9.70 36.01 2.52
83 84 4.560035 CACGGAACATGAAGATGCATTTTC 59.440 41.667 20.20 20.20 35.34 2.29
84 85 4.487948 CACGGAACATGAAGATGCATTTT 58.512 39.130 0.00 0.00 32.14 1.82
85 86 3.674138 GCACGGAACATGAAGATGCATTT 60.674 43.478 0.00 0.00 32.14 2.32
86 87 2.159338 GCACGGAACATGAAGATGCATT 60.159 45.455 0.00 0.00 32.14 3.56
87 88 1.402968 GCACGGAACATGAAGATGCAT 59.597 47.619 0.00 0.00 32.14 3.96
88 89 0.804364 GCACGGAACATGAAGATGCA 59.196 50.000 0.00 0.00 32.14 3.96
89 90 0.804364 TGCACGGAACATGAAGATGC 59.196 50.000 0.00 3.25 32.14 3.91
90 91 3.431856 CATTGCACGGAACATGAAGATG 58.568 45.455 0.00 0.00 35.49 2.90
91 92 2.159338 GCATTGCACGGAACATGAAGAT 60.159 45.455 3.15 0.00 0.00 2.40
92 93 1.199789 GCATTGCACGGAACATGAAGA 59.800 47.619 3.15 0.00 0.00 2.87
93 94 1.068402 TGCATTGCACGGAACATGAAG 60.068 47.619 7.38 0.00 31.71 3.02
94 95 0.957362 TGCATTGCACGGAACATGAA 59.043 45.000 7.38 0.00 31.71 2.57
95 96 1.135344 CATGCATTGCACGGAACATGA 60.135 47.619 14.66 0.00 43.04 3.07
96 97 1.273688 CATGCATTGCACGGAACATG 58.726 50.000 14.66 2.46 43.04 3.21
97 98 0.173935 CCATGCATTGCACGGAACAT 59.826 50.000 18.65 0.00 45.44 2.71
98 99 1.585517 CCATGCATTGCACGGAACA 59.414 52.632 18.65 0.00 45.44 3.18
99 100 1.153784 CCCATGCATTGCACGGAAC 60.154 57.895 24.52 0.00 45.44 3.62
100 101 3.004326 GCCCATGCATTGCACGGAA 62.004 57.895 24.52 0.00 45.44 4.30
101 102 3.451004 GCCCATGCATTGCACGGA 61.451 61.111 24.52 0.00 45.44 4.69
102 103 3.761140 TGCCCATGCATTGCACGG 61.761 61.111 16.65 16.65 44.23 4.94
111 112 2.260844 TACTAGCAAGATGCCCATGC 57.739 50.000 0.00 0.00 46.52 4.06
112 113 2.486982 GCATACTAGCAAGATGCCCATG 59.513 50.000 7.82 0.00 46.52 3.66
113 114 2.107031 TGCATACTAGCAAGATGCCCAT 59.893 45.455 13.75 0.00 46.52 4.00
114 115 1.490069 TGCATACTAGCAAGATGCCCA 59.510 47.619 13.75 0.00 46.52 5.36
115 116 2.260844 TGCATACTAGCAAGATGCCC 57.739 50.000 13.75 0.00 46.52 5.36
123 124 9.613428 AAGTGTTTATAAGATTGCATACTAGCA 57.387 29.630 0.00 0.00 43.99 3.49
143 144 9.715121 AGCATCAATATTGATTTCAAAAGTGTT 57.285 25.926 25.16 10.06 45.13 3.32
144 145 9.362539 GAGCATCAATATTGATTTCAAAAGTGT 57.637 29.630 25.16 7.13 45.13 3.55
145 146 8.529102 CGAGCATCAATATTGATTTCAAAAGTG 58.471 33.333 25.16 14.77 45.13 3.16
146 147 7.703621 CCGAGCATCAATATTGATTTCAAAAGT 59.296 33.333 25.16 2.68 45.13 2.66
147 148 7.306399 GCCGAGCATCAATATTGATTTCAAAAG 60.306 37.037 25.16 14.59 45.13 2.27
148 149 6.476380 GCCGAGCATCAATATTGATTTCAAAA 59.524 34.615 25.16 0.15 45.13 2.44
149 150 5.978919 GCCGAGCATCAATATTGATTTCAAA 59.021 36.000 25.16 0.88 45.13 2.69
150 151 5.300034 AGCCGAGCATCAATATTGATTTCAA 59.700 36.000 25.16 1.60 45.13 2.69
151 152 4.823442 AGCCGAGCATCAATATTGATTTCA 59.177 37.500 25.16 2.33 45.13 2.69
152 153 5.368256 AGCCGAGCATCAATATTGATTTC 57.632 39.130 25.16 22.23 45.13 2.17
153 154 4.083643 CGAGCCGAGCATCAATATTGATTT 60.084 41.667 25.16 17.30 45.13 2.17
154 155 3.434641 CGAGCCGAGCATCAATATTGATT 59.565 43.478 25.16 14.14 45.13 2.57
155 156 4.800582 TTCGAGCCGAGCATCAATATTGAT 60.801 41.667 22.65 22.65 41.91 2.57
156 157 2.035832 TCGAGCCGAGCATCAATATTGA 59.964 45.455 20.07 20.07 42.14 2.57
157 158 2.407090 TCGAGCCGAGCATCAATATTG 58.593 47.619 9.29 9.29 33.17 1.90
158 159 2.820059 TCGAGCCGAGCATCAATATT 57.180 45.000 0.00 0.00 33.17 1.28
159 160 2.820059 TTCGAGCCGAGCATCAATAT 57.180 45.000 0.00 0.00 37.14 1.28
160 161 2.820059 ATTCGAGCCGAGCATCAATA 57.180 45.000 0.00 0.00 37.14 1.90
161 162 1.959042 AATTCGAGCCGAGCATCAAT 58.041 45.000 0.00 0.00 37.14 2.57
162 163 1.398041 CAAATTCGAGCCGAGCATCAA 59.602 47.619 0.00 0.00 37.14 2.57
163 164 1.009078 CAAATTCGAGCCGAGCATCA 58.991 50.000 0.00 0.00 37.14 3.07
164 165 0.305922 CCAAATTCGAGCCGAGCATC 59.694 55.000 0.00 0.00 37.14 3.91
165 166 1.097547 CCCAAATTCGAGCCGAGCAT 61.098 55.000 0.00 0.00 37.14 3.79
166 167 1.745115 CCCAAATTCGAGCCGAGCA 60.745 57.895 0.00 0.00 37.14 4.26
167 168 3.102097 CCCAAATTCGAGCCGAGC 58.898 61.111 0.00 0.00 37.14 5.03
168 169 2.813179 CGCCCAAATTCGAGCCGAG 61.813 63.158 0.00 0.00 37.14 4.63
169 170 2.817834 CGCCCAAATTCGAGCCGA 60.818 61.111 0.00 0.00 0.00 5.54
170 171 3.876198 CCGCCCAAATTCGAGCCG 61.876 66.667 0.00 0.00 0.00 5.52
171 172 3.518068 CCCGCCCAAATTCGAGCC 61.518 66.667 0.00 0.00 0.00 4.70
172 173 1.873270 AAACCCGCCCAAATTCGAGC 61.873 55.000 0.00 0.00 0.00 5.03
173 174 0.109319 CAAACCCGCCCAAATTCGAG 60.109 55.000 0.00 0.00 0.00 4.04
174 175 1.960612 CAAACCCGCCCAAATTCGA 59.039 52.632 0.00 0.00 0.00 3.71
175 176 1.736282 GCAAACCCGCCCAAATTCG 60.736 57.895 0.00 0.00 0.00 3.34
176 177 0.036483 ATGCAAACCCGCCCAAATTC 60.036 50.000 0.00 0.00 0.00 2.17
177 178 0.321475 CATGCAAACCCGCCCAAATT 60.321 50.000 0.00 0.00 0.00 1.82
178 179 1.296068 CATGCAAACCCGCCCAAAT 59.704 52.632 0.00 0.00 0.00 2.32
179 180 2.739784 CATGCAAACCCGCCCAAA 59.260 55.556 0.00 0.00 0.00 3.28
180 181 4.001226 GCATGCAAACCCGCCCAA 62.001 61.111 14.21 0.00 0.00 4.12
182 183 4.001226 TTGCATGCAAACCCGCCC 62.001 61.111 30.19 0.00 32.44 6.13
183 184 2.738139 GTTGCATGCAAACCCGCC 60.738 61.111 33.42 16.88 37.70 6.13
184 185 2.023223 CTGTTGCATGCAAACCCGC 61.023 57.895 33.42 20.93 37.70 6.13
185 186 2.023223 GCTGTTGCATGCAAACCCG 61.023 57.895 33.42 21.23 37.70 5.28
186 187 1.069427 TGCTGTTGCATGCAAACCC 59.931 52.632 33.42 21.64 45.31 4.11
187 188 4.754570 TGCTGTTGCATGCAAACC 57.245 50.000 33.42 22.35 45.31 3.27
203 204 2.481795 CCTGAACAACCCTGCAAAGTTG 60.482 50.000 21.12 21.12 46.95 3.16
204 205 1.756538 CCTGAACAACCCTGCAAAGTT 59.243 47.619 0.00 0.00 0.00 2.66
205 206 1.064017 TCCTGAACAACCCTGCAAAGT 60.064 47.619 0.00 0.00 0.00 2.66
206 207 1.610522 CTCCTGAACAACCCTGCAAAG 59.389 52.381 0.00 0.00 0.00 2.77
207 208 1.691196 CTCCTGAACAACCCTGCAAA 58.309 50.000 0.00 0.00 0.00 3.68
208 209 0.823356 GCTCCTGAACAACCCTGCAA 60.823 55.000 0.00 0.00 0.00 4.08
209 210 1.228245 GCTCCTGAACAACCCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
210 211 2.328099 CGCTCCTGAACAACCCTGC 61.328 63.158 0.00 0.00 0.00 4.85
211 212 2.328099 GCGCTCCTGAACAACCCTG 61.328 63.158 0.00 0.00 0.00 4.45
212 213 2.032681 GCGCTCCTGAACAACCCT 59.967 61.111 0.00 0.00 0.00 4.34
213 214 3.423154 CGCGCTCCTGAACAACCC 61.423 66.667 5.56 0.00 0.00 4.11
214 215 2.665185 ACGCGCTCCTGAACAACC 60.665 61.111 5.73 0.00 0.00 3.77
215 216 0.388134 TAGACGCGCTCCTGAACAAC 60.388 55.000 5.73 0.00 0.00 3.32
216 217 0.388134 GTAGACGCGCTCCTGAACAA 60.388 55.000 5.73 0.00 0.00 2.83
217 218 1.211969 GTAGACGCGCTCCTGAACA 59.788 57.895 5.73 0.00 0.00 3.18
218 219 1.868251 CGTAGACGCGCTCCTGAAC 60.868 63.158 5.73 0.00 0.00 3.18
219 220 2.483745 CGTAGACGCGCTCCTGAA 59.516 61.111 5.73 0.00 0.00 3.02
229 230 3.179265 CTTGGCGTGGCGTAGACG 61.179 66.667 0.00 0.00 41.59 4.18
230 231 3.488090 GCTTGGCGTGGCGTAGAC 61.488 66.667 0.56 0.00 0.00 2.59
231 232 3.523087 TTGCTTGGCGTGGCGTAGA 62.523 57.895 0.56 0.00 0.00 2.59
232 233 3.027170 CTTGCTTGGCGTGGCGTAG 62.027 63.158 0.00 0.00 0.00 3.51
245 246 5.220710 TGCTTTCTAGAAGAACTCTTGCT 57.779 39.130 5.12 0.00 33.26 3.91
246 247 5.931441 TTGCTTTCTAGAAGAACTCTTGC 57.069 39.130 5.12 2.95 33.26 4.01
271 272 3.100671 AGTACTCTTGTTCCAGCTAGGG 58.899 50.000 0.00 0.00 38.24 3.53
307 309 5.289193 CAGACAACCACATTGAAACAAACAG 59.711 40.000 0.00 0.00 41.23 3.16
328 330 3.695606 GTGAGACAGGGCGGCAGA 61.696 66.667 12.47 0.00 0.00 4.26
399 402 0.326264 AAGAAGATGCGGCCTGAACT 59.674 50.000 0.00 0.00 0.00 3.01
443 446 6.683974 ATCGGCATCAAAGTATATATTGGC 57.316 37.500 0.00 0.00 0.00 4.52
448 451 6.432783 CCCCAAAATCGGCATCAAAGTATATA 59.567 38.462 0.00 0.00 0.00 0.86
463 466 3.682377 GCACCAAAATAACCCCAAAATCG 59.318 43.478 0.00 0.00 0.00 3.34
488 491 1.212688 TGTATGGATCAAGTGGGCAGG 59.787 52.381 0.00 0.00 0.00 4.85
509 512 2.952978 TGCGGTACAAAATGTGAGGTTT 59.047 40.909 0.00 0.00 0.00 3.27
574 580 5.178438 CCACTCGGAAAAGAAGAAGAAGAAG 59.822 44.000 0.00 0.00 0.00 2.85
576 582 4.503296 CCCACTCGGAAAAGAAGAAGAAGA 60.503 45.833 0.00 0.00 0.00 2.87
579 585 2.704065 ACCCACTCGGAAAAGAAGAAGA 59.296 45.455 0.00 0.00 34.64 2.87
580 586 2.808543 CACCCACTCGGAAAAGAAGAAG 59.191 50.000 0.00 0.00 34.64 2.85
581 587 2.846193 CACCCACTCGGAAAAGAAGAA 58.154 47.619 0.00 0.00 34.64 2.52
583 589 0.875059 GCACCCACTCGGAAAAGAAG 59.125 55.000 0.00 0.00 34.64 2.85
584 590 0.181587 TGCACCCACTCGGAAAAGAA 59.818 50.000 0.00 0.00 34.64 2.52
585 591 0.250295 CTGCACCCACTCGGAAAAGA 60.250 55.000 0.00 0.00 34.64 2.52
587 593 0.817634 CACTGCACCCACTCGGAAAA 60.818 55.000 0.00 0.00 34.64 2.29
588 594 1.227823 CACTGCACCCACTCGGAAA 60.228 57.895 0.00 0.00 34.64 3.13
589 595 2.425592 CACTGCACCCACTCGGAA 59.574 61.111 0.00 0.00 34.64 4.30
590 596 4.314440 GCACTGCACCCACTCGGA 62.314 66.667 0.00 0.00 34.64 4.55
591 597 4.320456 AGCACTGCACCCACTCGG 62.320 66.667 3.30 0.00 37.81 4.63
592 598 2.740055 GAGCACTGCACCCACTCG 60.740 66.667 3.30 0.00 0.00 4.18
598 604 2.360475 GGAAGGGAGCACTGCACC 60.360 66.667 8.90 8.90 38.54 5.01
620 626 2.163613 GGATTCCGGCATCGTTTCTTTT 59.836 45.455 8.04 0.00 33.95 2.27
641 649 1.218316 GTGTAGCCGTCAAGGGGAG 59.782 63.158 0.00 0.00 41.48 4.30
645 653 1.732732 CGAGAAGTGTAGCCGTCAAGG 60.733 57.143 0.00 0.00 44.97 3.61
670 678 5.994250 TGCAAGTTGAGCTAGATTAGGATT 58.006 37.500 7.16 0.00 0.00 3.01
692 707 5.817816 GGAGTATGTCCCTGTTAAACAGATG 59.182 44.000 0.00 0.00 45.59 2.90
713 728 1.593787 ACGCTGTGTGATGGAGGAG 59.406 57.895 0.00 0.00 0.00 3.69
730 745 1.519455 CGGAATCTGGACTCGCCAC 60.519 63.158 0.00 0.00 43.33 5.01
737 752 1.863267 CATCTCAGCGGAATCTGGAC 58.137 55.000 0.00 0.00 34.91 4.02
739 754 0.883814 GGCATCTCAGCGGAATCTGG 60.884 60.000 0.00 0.00 34.91 3.86
740 755 0.179065 TGGCATCTCAGCGGAATCTG 60.179 55.000 0.00 0.00 34.64 2.90
741 756 0.179062 GTGGCATCTCAGCGGAATCT 60.179 55.000 0.00 0.00 34.64 2.40
742 757 1.162800 GGTGGCATCTCAGCGGAATC 61.163 60.000 0.00 0.00 34.64 2.52
743 758 1.153086 GGTGGCATCTCAGCGGAAT 60.153 57.895 0.00 0.00 34.64 3.01
744 759 2.268920 GGTGGCATCTCAGCGGAA 59.731 61.111 0.00 0.00 34.64 4.30
757 787 2.779742 TTTCAATGGGGCCTCGGTGG 62.780 60.000 0.84 0.00 39.35 4.61
760 790 2.418083 GCTTTCAATGGGGCCTCGG 61.418 63.158 0.84 0.00 0.00 4.63
769 799 0.317269 CTATGGCGGCGCTTTCAATG 60.317 55.000 32.30 13.62 0.00 2.82
793 823 3.520317 TGAGTATACCACCACCCGAAAAT 59.480 43.478 0.00 0.00 0.00 1.82
801 831 2.835764 TGGACCTTGAGTATACCACCAC 59.164 50.000 0.00 0.00 0.00 4.16
806 836 2.474112 TGGGTGGACCTTGAGTATACC 58.526 52.381 0.00 0.00 41.11 2.73
824 854 1.971695 GAAGAAGGCCGGTGGTTGG 60.972 63.158 1.90 0.00 0.00 3.77
864 894 2.184579 GGAGAAACGGAGGGCTCG 59.815 66.667 0.00 0.00 0.00 5.03
867 897 2.046217 GTGGGAGAAACGGAGGGC 60.046 66.667 0.00 0.00 0.00 5.19
898 928 1.954927 CTCCCCTTAGCTTAAAGGCG 58.045 55.000 9.48 2.05 44.07 5.52
899 929 1.681538 GCTCCCCTTAGCTTAAAGGC 58.318 55.000 9.48 0.00 44.07 4.35
944 974 2.266554 GATCAAGAGTGAGAACGCCAG 58.733 52.381 0.00 0.00 37.14 4.85
974 1076 4.436998 GCTGCTAGACGGCCGTGT 62.437 66.667 39.65 35.34 45.68 4.49
983 1090 0.103755 CATGGCTCGAAGCTGCTAGA 59.896 55.000 0.90 5.04 41.99 2.43
1120 1227 3.680786 CACGGTGCAGGTCGAGGA 61.681 66.667 10.40 0.00 0.00 3.71
1470 1586 4.129737 CTCGCGATCACCACGGGT 62.130 66.667 10.36 0.00 42.58 5.28
1695 1811 1.905215 AGCTCAAGTGGCATCTGTAGT 59.095 47.619 0.00 0.00 0.00 2.73
1696 1812 2.168106 AGAGCTCAAGTGGCATCTGTAG 59.832 50.000 17.77 0.00 0.00 2.74
1697 1813 2.093816 CAGAGCTCAAGTGGCATCTGTA 60.094 50.000 17.77 0.00 34.04 2.74
1698 1814 0.982704 AGAGCTCAAGTGGCATCTGT 59.017 50.000 17.77 0.00 0.00 3.41
1699 1815 1.370609 CAGAGCTCAAGTGGCATCTG 58.629 55.000 17.77 0.00 32.96 2.90
1700 1816 0.252479 CCAGAGCTCAAGTGGCATCT 59.748 55.000 17.77 0.00 0.00 2.90
1701 1817 0.035630 ACCAGAGCTCAAGTGGCATC 60.036 55.000 17.77 0.00 34.40 3.91
1702 1818 0.403271 AACCAGAGCTCAAGTGGCAT 59.597 50.000 17.77 5.12 34.40 4.40
1712 1828 2.317149 GATGGCGGCTAACCAGAGCT 62.317 60.000 11.43 0.00 41.46 4.09
1744 1860 1.966451 CAGGCCGTTGGTCACCTTC 60.966 63.158 0.00 0.00 0.00 3.46
1747 1863 4.947147 TGCAGGCCGTTGGTCACC 62.947 66.667 0.00 0.00 0.00 4.02
1761 1877 8.791327 TGATGACTAAAGAATAATGACTTGCA 57.209 30.769 0.00 0.00 0.00 4.08
1766 1882 8.594881 ACCGATGATGACTAAAGAATAATGAC 57.405 34.615 0.00 0.00 0.00 3.06
1767 1883 8.642432 AGACCGATGATGACTAAAGAATAATGA 58.358 33.333 0.00 0.00 0.00 2.57
1768 1884 8.706936 CAGACCGATGATGACTAAAGAATAATG 58.293 37.037 0.00 0.00 0.00 1.90
1770 1886 6.701841 GCAGACCGATGATGACTAAAGAATAA 59.298 38.462 0.00 0.00 0.00 1.40
1771 1887 6.183360 TGCAGACCGATGATGACTAAAGAATA 60.183 38.462 0.00 0.00 0.00 1.75
1775 1891 3.785486 TGCAGACCGATGATGACTAAAG 58.215 45.455 0.00 0.00 0.00 1.85
1776 1892 3.885724 TGCAGACCGATGATGACTAAA 57.114 42.857 0.00 0.00 0.00 1.85
1777 1893 4.122046 CAATGCAGACCGATGATGACTAA 58.878 43.478 0.00 0.00 0.00 2.24
1780 1896 2.031314 CACAATGCAGACCGATGATGAC 59.969 50.000 0.00 0.00 0.00 3.06
1781 1897 2.282407 CACAATGCAGACCGATGATGA 58.718 47.619 0.00 0.00 0.00 2.92
1782 1898 1.268386 GCACAATGCAGACCGATGATG 60.268 52.381 0.00 0.00 44.26 3.07
1783 1899 1.019673 GCACAATGCAGACCGATGAT 58.980 50.000 0.00 0.00 44.26 2.45
1784 1900 2.470156 GCACAATGCAGACCGATGA 58.530 52.632 0.00 0.00 44.26 2.92
1809 2528 9.098355 TGAATTATCACTCCTAAAAATCGTCTG 57.902 33.333 0.00 0.00 0.00 3.51
1853 2574 9.233649 CTTCGGTAACTAGAGTTATCCTCATAT 57.766 37.037 5.47 0.00 43.12 1.78
1862 2584 5.884232 TGCTCATCTTCGGTAACTAGAGTTA 59.116 40.000 0.00 0.00 39.31 2.24
1868 2590 4.159693 ACACATGCTCATCTTCGGTAACTA 59.840 41.667 0.00 0.00 0.00 2.24
1887 2612 8.522830 GGATTGGAAGATTTTTAGATCAACACA 58.477 33.333 0.00 0.00 0.00 3.72
1888 2613 8.522830 TGGATTGGAAGATTTTTAGATCAACAC 58.477 33.333 0.00 0.00 0.00 3.32
1962 2689 1.446966 GCTGTCAGTCGAAGGCTCC 60.447 63.158 0.93 0.00 40.46 4.70
2020 2760 0.740737 GATTGATTGTTGGGCGGGAG 59.259 55.000 0.00 0.00 0.00 4.30
2021 2761 0.038890 TGATTGATTGTTGGGCGGGA 59.961 50.000 0.00 0.00 0.00 5.14
2022 2762 0.894141 TTGATTGATTGTTGGGCGGG 59.106 50.000 0.00 0.00 0.00 6.13
2023 2763 2.739885 TTTGATTGATTGTTGGGCGG 57.260 45.000 0.00 0.00 0.00 6.13
2024 2764 3.847542 TGATTTGATTGATTGTTGGGCG 58.152 40.909 0.00 0.00 0.00 6.13
2025 2765 4.824289 ACTGATTTGATTGATTGTTGGGC 58.176 39.130 0.00 0.00 0.00 5.36
2057 2797 6.239600 GCATGGAGGATGGAACTGTTATACTA 60.240 42.308 0.00 0.00 31.99 1.82
2058 2798 5.455326 GCATGGAGGATGGAACTGTTATACT 60.455 44.000 0.00 0.00 31.99 2.12
2059 2799 4.757149 GCATGGAGGATGGAACTGTTATAC 59.243 45.833 0.00 0.00 31.99 1.47
2060 2800 4.202461 GGCATGGAGGATGGAACTGTTATA 60.202 45.833 0.00 0.00 31.99 0.98
2061 2801 3.435601 GGCATGGAGGATGGAACTGTTAT 60.436 47.826 0.00 0.00 31.99 1.89
2067 2807 0.548031 TCTGGCATGGAGGATGGAAC 59.452 55.000 0.00 0.00 31.99 3.62
2070 2810 2.236766 GAAATCTGGCATGGAGGATGG 58.763 52.381 0.00 0.00 31.99 3.51
2155 2900 3.128764 GGGGAAGAAAAATAAGAGCACGG 59.871 47.826 0.00 0.00 0.00 4.94
2213 2958 2.594592 AGGTGAAGTTGCCGTGCC 60.595 61.111 0.00 0.00 0.00 5.01
2218 2963 3.366374 GCTGAAATACAGGTGAAGTTGCC 60.366 47.826 0.00 0.00 45.82 4.52
2231 2976 5.924475 ACACAGTTACACAGCTGAAATAC 57.076 39.130 23.35 12.63 36.56 1.89
2256 3001 3.869065 TCTACTGCCATTTTAAGACCGG 58.131 45.455 0.00 0.00 0.00 5.28
2288 3094 6.238786 CGACAGTCCTACTATTGCTTACATCT 60.239 42.308 0.00 0.00 0.00 2.90
2289 3095 5.915758 CGACAGTCCTACTATTGCTTACATC 59.084 44.000 0.00 0.00 0.00 3.06
2290 3096 5.360144 ACGACAGTCCTACTATTGCTTACAT 59.640 40.000 0.00 0.00 0.00 2.29
2291 3097 4.703575 ACGACAGTCCTACTATTGCTTACA 59.296 41.667 0.00 0.00 0.00 2.41
2320 3126 4.503714 TGTTTCTTATCTGATGTCCCCC 57.496 45.455 0.00 0.00 0.00 5.40
2329 3135 6.203530 TCAGTGCTGTTCTTGTTTCTTATCTG 59.796 38.462 0.00 0.00 0.00 2.90
2337 5169 3.088532 TGGTTCAGTGCTGTTCTTGTTT 58.911 40.909 0.00 0.00 0.00 2.83
2480 5312 5.046014 AGGTGAGCACATTGAAATAGAGAGT 60.046 40.000 2.75 0.00 0.00 3.24
2481 5313 5.426504 AGGTGAGCACATTGAAATAGAGAG 58.573 41.667 2.75 0.00 0.00 3.20
2484 5316 6.038603 GCATTAGGTGAGCACATTGAAATAGA 59.961 38.462 2.75 0.00 0.00 1.98
2485 5317 6.204359 GCATTAGGTGAGCACATTGAAATAG 58.796 40.000 2.75 0.00 0.00 1.73
2486 5318 5.067674 GGCATTAGGTGAGCACATTGAAATA 59.932 40.000 2.75 0.00 0.00 1.40
2487 5319 4.142093 GGCATTAGGTGAGCACATTGAAAT 60.142 41.667 2.75 0.00 0.00 2.17
2488 5320 3.193267 GGCATTAGGTGAGCACATTGAAA 59.807 43.478 2.75 0.00 0.00 2.69
2490 5322 2.025981 AGGCATTAGGTGAGCACATTGA 60.026 45.455 2.75 0.00 0.00 2.57
2491 5323 2.098607 CAGGCATTAGGTGAGCACATTG 59.901 50.000 2.75 0.00 0.00 2.82
2492 5324 2.372264 CAGGCATTAGGTGAGCACATT 58.628 47.619 2.75 0.00 0.00 2.71
2493 5325 1.409241 CCAGGCATTAGGTGAGCACAT 60.409 52.381 2.75 0.00 0.00 3.21
2494 5326 0.035152 CCAGGCATTAGGTGAGCACA 60.035 55.000 2.75 0.00 0.00 4.57
2495 5327 0.253044 TCCAGGCATTAGGTGAGCAC 59.747 55.000 0.00 0.00 0.00 4.40
2496 5328 0.253044 GTCCAGGCATTAGGTGAGCA 59.747 55.000 0.00 0.00 0.00 4.26
2497 5329 0.464554 GGTCCAGGCATTAGGTGAGC 60.465 60.000 0.00 0.00 0.00 4.26
2498 5330 0.911769 TGGTCCAGGCATTAGGTGAG 59.088 55.000 0.00 0.00 0.00 3.51
2538 5373 5.529800 GTGGTAAAAAGGTTAGCTGAGACAA 59.470 40.000 0.00 0.00 0.00 3.18
2576 5414 4.456911 ACACAATCAACACTTCCTGCATAG 59.543 41.667 0.00 0.00 0.00 2.23
2598 5436 3.302347 CTGGTCGTGCTCTCCCCAC 62.302 68.421 0.00 0.00 0.00 4.61
2626 5464 2.604046 ATTGCGTAGGCCTTGTCTAG 57.396 50.000 12.58 0.00 38.85 2.43
2668 5506 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2669 5507 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2693 5531 9.430399 ACATCTCCTTTTATCCATTTTGATGAT 57.570 29.630 0.00 0.00 33.85 2.45
2726 5564 9.680315 AGTGATGTATCTAGAACTAAAATACGC 57.320 33.333 0.00 0.00 0.00 4.42
2858 6260 4.279169 ACAAACTGAAACCACCTGATCATG 59.721 41.667 0.00 0.00 0.00 3.07
2882 6286 0.792640 CAGATCAGTGCGTGACCAAC 59.207 55.000 0.00 0.00 38.28 3.77
2965 6418 1.979693 GGTCCTCGAGCTGTGGAGT 60.980 63.158 6.99 0.00 40.79 3.85
3009 6462 2.671177 CGCAGCCACCAAGAAGTCG 61.671 63.158 0.00 0.00 0.00 4.18
3027 6480 2.514824 GGATCTGCGGGCTTGTCC 60.515 66.667 0.00 0.00 0.00 4.02
3028 6481 1.817099 CAGGATCTGCGGGCTTGTC 60.817 63.158 0.00 0.00 0.00 3.18
3029 6482 2.270205 CAGGATCTGCGGGCTTGT 59.730 61.111 0.00 0.00 0.00 3.16
3042 6495 2.046023 CCATTGGTGCGAGCAGGA 60.046 61.111 0.00 0.00 0.00 3.86
3049 6502 4.170062 CGAGCTGCCATTGGTGCG 62.170 66.667 4.26 0.00 31.91 5.34
3086 6539 1.009829 GCAAATCAGTGGAGTAGCGG 58.990 55.000 0.00 0.00 0.00 5.52
3087 6540 1.725641 TGCAAATCAGTGGAGTAGCG 58.274 50.000 0.00 0.00 0.00 4.26
3088 6541 5.586243 TCTTATTGCAAATCAGTGGAGTAGC 59.414 40.000 1.71 0.00 0.00 3.58
3093 6546 7.707624 AGAAATCTTATTGCAAATCAGTGGA 57.292 32.000 1.71 0.00 0.00 4.02
3097 6550 8.192774 TGGCTAAGAAATCTTATTGCAAATCAG 58.807 33.333 1.71 0.00 37.75 2.90
3101 6554 9.153721 CAAATGGCTAAGAAATCTTATTGCAAA 57.846 29.630 1.71 0.00 37.75 3.68
3145 6598 7.760340 TGATGTACGCATTAGTATACACAACAA 59.240 33.333 5.50 0.00 35.07 2.83
3147 6600 7.688478 TGATGTACGCATTAGTATACACAAC 57.312 36.000 5.50 0.00 35.07 3.32
3149 6602 8.138712 TGATTGATGTACGCATTAGTATACACA 58.861 33.333 5.50 0.00 35.07 3.72
3150 6603 8.515473 TGATTGATGTACGCATTAGTATACAC 57.485 34.615 5.50 0.00 35.07 2.90
3163 6617 6.280643 TCAAATAGACCCTGATTGATGTACG 58.719 40.000 0.00 0.00 0.00 3.67
3201 6655 3.106827 TGACACTCTAATCCTGCATCCA 58.893 45.455 0.00 0.00 0.00 3.41
3313 6776 7.789273 TTTTCTTTGACATCCAGTTACGTTA 57.211 32.000 0.00 0.00 0.00 3.18
3315 6778 6.687081 TTTTTCTTTGACATCCAGTTACGT 57.313 33.333 0.00 0.00 0.00 3.57
3316 6779 7.359595 TGATTTTTCTTTGACATCCAGTTACG 58.640 34.615 0.00 0.00 0.00 3.18
3324 6787 6.161381 ACCATGCTGATTTTTCTTTGACATC 58.839 36.000 0.00 0.00 0.00 3.06
3327 6790 8.538409 AAATACCATGCTGATTTTTCTTTGAC 57.462 30.769 0.00 0.00 0.00 3.18
3374 7612 0.749454 ATCCTGCGATGCAAAGGTCC 60.749 55.000 0.00 0.00 38.41 4.46
3387 7625 0.171903 GATGGTTGTGTGCATCCTGC 59.828 55.000 0.00 0.00 45.29 4.85
3388 7626 1.536940 TGATGGTTGTGTGCATCCTG 58.463 50.000 0.00 0.00 35.89 3.86
3478 7990 8.684386 TTTGGTCAAATCTTGTAATGTGTCTA 57.316 30.769 0.00 0.00 0.00 2.59
3479 7991 7.581213 TTTGGTCAAATCTTGTAATGTGTCT 57.419 32.000 0.00 0.00 0.00 3.41
3480 7992 8.134895 TCTTTTGGTCAAATCTTGTAATGTGTC 58.865 33.333 0.00 0.00 0.00 3.67
3481 7993 7.920682 GTCTTTTGGTCAAATCTTGTAATGTGT 59.079 33.333 0.00 0.00 0.00 3.72
3482 7994 7.920151 TGTCTTTTGGTCAAATCTTGTAATGTG 59.080 33.333 0.00 0.00 0.00 3.21
3483 7995 7.920682 GTGTCTTTTGGTCAAATCTTGTAATGT 59.079 33.333 0.00 0.00 0.00 2.71
3484 7996 7.920151 TGTGTCTTTTGGTCAAATCTTGTAATG 59.080 33.333 0.00 0.00 0.00 1.90
3485 7997 8.006298 TGTGTCTTTTGGTCAAATCTTGTAAT 57.994 30.769 0.00 0.00 0.00 1.89
3486 7998 7.397892 TGTGTCTTTTGGTCAAATCTTGTAA 57.602 32.000 0.00 0.00 0.00 2.41
3495 8007 2.223782 GCTGCATGTGTCTTTTGGTCAA 60.224 45.455 0.00 0.00 0.00 3.18
3497 8009 1.610522 AGCTGCATGTGTCTTTTGGTC 59.389 47.619 1.02 0.00 0.00 4.02
3500 8012 4.470462 GACTTAGCTGCATGTGTCTTTTG 58.530 43.478 1.02 0.00 0.00 2.44
3515 8027 1.638467 CGCAAGATGCCGACTTAGC 59.362 57.895 0.00 0.00 41.12 3.09
3524 8036 1.734117 GGTGTTTGCCGCAAGATGC 60.734 57.895 5.83 0.00 40.69 3.91
3562 8074 1.263217 GTTCCTACAACGTTGGCACAG 59.737 52.381 30.34 19.98 42.39 3.66
3575 8087 4.873827 TGCTGAATTTATCACCGTTCCTAC 59.126 41.667 0.00 0.00 33.47 3.18
3582 8094 5.698832 TGAAACTTGCTGAATTTATCACCG 58.301 37.500 0.00 0.00 33.47 4.94
3584 8096 8.006027 GCTTTTGAAACTTGCTGAATTTATCAC 58.994 33.333 0.00 0.00 33.47 3.06
3585 8097 7.710044 TGCTTTTGAAACTTGCTGAATTTATCA 59.290 29.630 0.00 0.00 36.38 2.15
3593 8105 5.237048 AGTTTTGCTTTTGAAACTTGCTGA 58.763 33.333 0.00 0.00 41.86 4.26
3594 8106 5.535043 AGTTTTGCTTTTGAAACTTGCTG 57.465 34.783 0.00 0.00 41.86 4.41
3599 8111 7.165485 AGGGTTTAAGTTTTGCTTTTGAAACT 58.835 30.769 0.00 0.00 45.29 2.66
3605 8117 6.884832 AGCTTAGGGTTTAAGTTTTGCTTTT 58.115 32.000 0.00 0.00 38.57 2.27
3609 8121 5.707242 AGAGCTTAGGGTTTAAGTTTTGC 57.293 39.130 0.00 0.00 0.00 3.68
3610 8122 7.306213 GCTTAGAGCTTAGGGTTTAAGTTTTG 58.694 38.462 13.51 0.00 38.81 2.44
3611 8123 6.433404 GGCTTAGAGCTTAGGGTTTAAGTTTT 59.567 38.462 13.51 0.00 41.99 2.43
3615 8127 4.452825 GGGCTTAGAGCTTAGGGTTTAAG 58.547 47.826 9.24 9.24 41.99 1.85
3616 8128 3.201487 GGGGCTTAGAGCTTAGGGTTTAA 59.799 47.826 0.00 0.00 41.99 1.52
3643 8163 0.861155 TTAGGGCTTTGGGGTTTGGA 59.139 50.000 0.00 0.00 0.00 3.53
3649 8169 2.042944 GGGCTTAGGGCTTTGGGG 60.043 66.667 0.00 0.00 41.46 4.96
3672 8198 7.955918 AGTTTCATTTGCTTTTAGGATCAAGT 58.044 30.769 0.00 0.00 0.00 3.16
3675 8201 7.153985 CCAAGTTTCATTTGCTTTTAGGATCA 58.846 34.615 0.00 0.00 0.00 2.92
3676 8202 7.116805 CACCAAGTTTCATTTGCTTTTAGGATC 59.883 37.037 0.00 0.00 0.00 3.36
3678 8204 6.097554 TCACCAAGTTTCATTTGCTTTTAGGA 59.902 34.615 0.00 0.00 0.00 2.94
3773 8306 9.598517 TTGAAAGCATTCTGACAACTTTTAAAT 57.401 25.926 3.03 0.00 36.48 1.40
3780 8313 6.480981 CCAATTTTGAAAGCATTCTGACAACT 59.519 34.615 3.03 0.00 36.48 3.16
3784 8317 6.218746 AGACCAATTTTGAAAGCATTCTGAC 58.781 36.000 3.03 0.00 36.48 3.51
3788 8321 6.346040 CGACAAGACCAATTTTGAAAGCATTC 60.346 38.462 0.00 0.00 36.04 2.67
3792 8325 4.606961 TCGACAAGACCAATTTTGAAAGC 58.393 39.130 0.00 0.00 0.00 3.51
3793 8326 5.687285 CCTTCGACAAGACCAATTTTGAAAG 59.313 40.000 0.00 0.00 0.00 2.62
3798 8331 6.894339 AATACCTTCGACAAGACCAATTTT 57.106 33.333 0.00 0.00 0.00 1.82
3820 8354 3.617540 ATTCATGTTTGTTGCGACGAA 57.382 38.095 2.29 2.29 0.00 3.85
3825 8359 4.385146 TGTTGCATATTCATGTTTGTTGCG 59.615 37.500 0.00 0.00 34.40 4.85
3926 8462 0.885879 AGTTGCATGCTCCACACATG 59.114 50.000 20.33 0.00 46.19 3.21
3927 8463 1.171308 GAGTTGCATGCTCCACACAT 58.829 50.000 20.33 0.00 0.00 3.21
3930 8466 2.936928 CAGAGTTGCATGCTCCACA 58.063 52.632 20.33 0.00 33.69 4.17
3950 8486 0.038709 GCCCATGCGTGCAACTTTTA 60.039 50.000 0.00 0.00 31.75 1.52
3974 8510 6.014070 TGTGTTCTAGCCTTTAATCACCACTA 60.014 38.462 0.00 0.00 0.00 2.74
3975 8511 5.221843 TGTGTTCTAGCCTTTAATCACCACT 60.222 40.000 0.00 0.00 0.00 4.00
3993 8529 4.370917 AGTTTGGTCAATTGCATGTGTTC 58.629 39.130 0.00 0.00 0.00 3.18
3999 8535 7.045416 TCGTATAGTAGTTTGGTCAATTGCAT 58.955 34.615 0.00 0.00 0.00 3.96
4005 8541 7.066163 TCGAGATTCGTATAGTAGTTTGGTCAA 59.934 37.037 0.00 0.00 41.35 3.18
4007 8543 6.952743 TCGAGATTCGTATAGTAGTTTGGTC 58.047 40.000 0.00 0.00 41.35 4.02
4019 8555 3.748048 CCCATTTGCATCGAGATTCGTAT 59.252 43.478 0.00 0.00 41.35 3.06
4023 8559 2.033801 CCACCCATTTGCATCGAGATTC 59.966 50.000 0.00 0.00 0.00 2.52
4027 8563 1.135315 CAACCACCCATTTGCATCGAG 60.135 52.381 0.00 0.00 0.00 4.04
4029 8565 0.737019 GCAACCACCCATTTGCATCG 60.737 55.000 1.51 0.00 46.13 3.84
4030 8566 3.142124 GCAACCACCCATTTGCATC 57.858 52.632 1.51 0.00 46.13 3.91
4033 8569 2.048316 CCGCAACCACCCATTTGC 60.048 61.111 0.00 0.00 43.90 3.68
4034 8570 2.048316 GCCGCAACCACCCATTTG 60.048 61.111 0.00 0.00 0.00 2.32
4037 8573 2.522923 TTTGCCGCAACCACCCAT 60.523 55.556 4.98 0.00 0.00 4.00
4038 8574 3.222855 CTTTGCCGCAACCACCCA 61.223 61.111 4.98 0.00 0.00 4.51
4040 8576 3.558099 GAGCTTTGCCGCAACCACC 62.558 63.158 4.98 0.00 0.00 4.61
4042 8578 3.294493 GGAGCTTTGCCGCAACCA 61.294 61.111 4.98 0.00 0.00 3.67
4043 8579 2.087462 AAAGGAGCTTTGCCGCAACC 62.087 55.000 4.98 3.75 31.98 3.77
4044 8580 0.940991 CAAAGGAGCTTTGCCGCAAC 60.941 55.000 4.98 0.00 43.07 4.17
4045 8581 1.363443 CAAAGGAGCTTTGCCGCAA 59.637 52.632 0.38 0.38 43.07 4.85
4046 8582 3.041701 CAAAGGAGCTTTGCCGCA 58.958 55.556 0.00 0.00 43.07 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.