Multiple sequence alignment - TraesCS4A01G010100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G010100 chr4A 100.000 2533 0 0 1 2533 5971711 5974243 0.000000e+00 4678.0
1 TraesCS4A01G010100 chr4D 91.315 852 29 14 1227 2065 464080290 464079471 0.000000e+00 1122.0
2 TraesCS4A01G010100 chr4D 88.792 687 36 17 486 1139 464080979 464080301 0.000000e+00 804.0
3 TraesCS4A01G010100 chr4D 88.046 435 23 5 1 408 464081404 464080972 2.930000e-134 488.0
4 TraesCS4A01G010100 chr4B 90.164 854 38 18 1227 2065 579469239 579468417 0.000000e+00 1070.0
5 TraesCS4A01G010100 chr4B 91.481 540 26 11 619 1138 579469790 579469251 0.000000e+00 725.0
6 TraesCS4A01G010100 chr4B 85.393 178 19 4 228 398 579470071 579469894 7.200000e-41 178.0
7 TraesCS4A01G010100 chr4B 94.643 112 4 1 488 599 579469890 579469781 3.350000e-39 172.0
8 TraesCS4A01G010100 chr6D 81.532 222 25 12 2198 2404 454213974 454214194 4.330000e-38 169.0
9 TraesCS4A01G010100 chr7B 95.062 81 4 0 409 489 733608807 733608887 7.360000e-26 128.0
10 TraesCS4A01G010100 chr6B 93.103 87 6 0 403 489 64925203 64925289 7.360000e-26 128.0
11 TraesCS4A01G010100 chr6B 93.827 81 5 0 409 489 1952050 1952130 3.420000e-24 122.0
12 TraesCS4A01G010100 chr5A 95.062 81 4 0 409 489 564603539 564603619 7.360000e-26 128.0
13 TraesCS4A01G010100 chr5A 93.023 86 5 1 404 489 126275723 126275639 9.510000e-25 124.0
14 TraesCS4A01G010100 chr5A 94.118 51 1 2 1185 1233 438354046 438353996 2.700000e-10 76.8
15 TraesCS4A01G010100 chr2B 95.062 81 4 0 409 489 454337889 454337809 7.360000e-26 128.0
16 TraesCS4A01G010100 chr2B 93.976 83 5 0 407 489 8691631 8691713 2.650000e-25 126.0
17 TraesCS4A01G010100 chr2A 95.000 80 4 0 410 489 28247590 28247669 2.650000e-25 126.0
18 TraesCS4A01G010100 chr5B 92.941 85 6 0 405 489 432982015 432982099 9.510000e-25 124.0
19 TraesCS4A01G010100 chr3B 97.917 48 1 0 1177 1224 526495903 526495856 1.610000e-12 84.2
20 TraesCS4A01G010100 chr3B 94.340 53 2 1 1182 1233 59326011 59325959 2.090000e-11 80.5
21 TraesCS4A01G010100 chr5D 88.235 68 4 4 1158 1224 554927642 554927706 7.510000e-11 78.7
22 TraesCS4A01G010100 chr1D 94.118 51 3 0 1183 1233 442373863 442373813 7.510000e-11 78.7
23 TraesCS4A01G010100 chr1D 94.118 51 1 2 1185 1233 323952326 323952276 2.700000e-10 76.8
24 TraesCS4A01G010100 chr6A 91.379 58 2 3 1169 1224 480648039 480647983 2.700000e-10 76.8
25 TraesCS4A01G010100 chrUn 92.308 52 3 1 1180 1230 65136685 65136736 3.500000e-09 73.1
26 TraesCS4A01G010100 chr7A 91.071 56 0 4 1187 1242 127585804 127585754 1.260000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G010100 chr4A 5971711 5974243 2532 False 4678.000000 4678 100.000000 1 2533 1 chr4A.!!$F1 2532
1 TraesCS4A01G010100 chr4D 464079471 464081404 1933 True 804.666667 1122 89.384333 1 2065 3 chr4D.!!$R1 2064
2 TraesCS4A01G010100 chr4B 579468417 579470071 1654 True 536.250000 1070 90.420250 228 2065 4 chr4B.!!$R1 1837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 980 0.036388 TAAGAGCCCAACAAGCCTCG 60.036 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2382 0.034616 CCTCCTCCTGGCGATCAATC 59.965 60.0 0.0 0.0 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.823689 GGCACACCTGATCTTCTCTAAATTTA 59.176 38.462 0.00 0.00 0.00 1.40
121 122 4.466370 TGGGGTAAAAATGTGTCACAAACA 59.534 37.500 10.28 0.00 34.78 2.83
133 134 5.068329 TGTGTCACAAACATGCCTAAATTGA 59.932 36.000 2.31 0.00 40.80 2.57
145 146 9.407380 ACATGCCTAAATTGAGTATAAATGTGA 57.593 29.630 0.00 0.00 0.00 3.58
209 216 2.671963 GACCCACCGCCACCTTTC 60.672 66.667 0.00 0.00 0.00 2.62
210 217 3.485346 GACCCACCGCCACCTTTCA 62.485 63.158 0.00 0.00 0.00 2.69
225 232 1.406539 CTTTCACAGCTGCAGTGGTTT 59.593 47.619 22.43 0.00 37.58 3.27
226 233 2.340210 TTCACAGCTGCAGTGGTTTA 57.660 45.000 22.43 3.05 37.58 2.01
239 267 4.857037 GCAGTGGTTTATTCGTTGGAATTC 59.143 41.667 0.00 0.00 42.71 2.17
289 317 9.736023 CTGAACTGCATAGTTTTTAAAACTCTT 57.264 29.630 23.96 12.04 46.79 2.85
293 321 9.869757 ACTGCATAGTTTTTAAAACTCTTTTGT 57.130 25.926 23.96 15.93 31.66 2.83
316 344 3.154827 TGAAGGTTGGTTGGATTCCTC 57.845 47.619 3.95 0.00 0.00 3.71
327 355 4.142160 GGTTGGATTCCTCAATGCTTAACC 60.142 45.833 3.95 2.45 32.65 2.85
387 422 4.702131 ACAAAGGATCTTGGTCTTATGTGC 59.298 41.667 0.00 0.00 0.00 4.57
391 426 0.739462 TCTTGGTCTTATGTGCGGCG 60.739 55.000 0.51 0.51 0.00 6.46
408 443 3.303928 GCGGGACCGGGAGATAGG 61.304 72.222 13.21 0.00 40.19 2.57
409 444 2.197875 CGGGACCGGGAGATAGGT 59.802 66.667 6.32 0.00 44.64 3.08
410 445 1.457604 CGGGACCGGGAGATAGGTA 59.542 63.158 6.32 0.00 41.51 3.08
411 446 0.892814 CGGGACCGGGAGATAGGTAC 60.893 65.000 6.32 0.00 41.51 3.34
412 447 0.482006 GGGACCGGGAGATAGGTACT 59.518 60.000 6.32 0.00 41.13 2.73
413 448 1.547449 GGGACCGGGAGATAGGTACTC 60.547 61.905 6.32 0.00 41.13 2.59
422 457 4.834357 GAGATAGGTACTCCTTCCGTTC 57.166 50.000 0.00 0.00 42.12 3.95
423 458 4.463070 GAGATAGGTACTCCTTCCGTTCT 58.537 47.826 0.00 0.00 42.12 3.01
424 459 5.619220 GAGATAGGTACTCCTTCCGTTCTA 58.381 45.833 0.00 0.00 42.12 2.10
425 460 6.011122 AGATAGGTACTCCTTCCGTTCTAA 57.989 41.667 0.00 0.00 42.12 2.10
426 461 6.430007 AGATAGGTACTCCTTCCGTTCTAAA 58.570 40.000 0.00 0.00 42.12 1.85
427 462 6.894103 AGATAGGTACTCCTTCCGTTCTAAAA 59.106 38.462 0.00 0.00 42.12 1.52
428 463 7.564292 AGATAGGTACTCCTTCCGTTCTAAAAT 59.436 37.037 0.00 0.00 42.12 1.82
429 464 8.773033 ATAGGTACTCCTTCCGTTCTAAAATA 57.227 34.615 0.00 0.00 42.12 1.40
430 465 7.110043 AGGTACTCCTTCCGTTCTAAAATAG 57.890 40.000 0.00 0.00 42.12 1.73
431 466 6.894103 AGGTACTCCTTCCGTTCTAAAATAGA 59.106 38.462 0.00 0.00 42.12 1.98
432 467 7.564292 AGGTACTCCTTCCGTTCTAAAATAGAT 59.436 37.037 0.00 0.00 42.12 1.98
433 468 8.854117 GGTACTCCTTCCGTTCTAAAATAGATA 58.146 37.037 0.00 0.00 34.22 1.98
436 471 8.202811 ACTCCTTCCGTTCTAAAATAGATAACC 58.797 37.037 0.00 0.00 34.22 2.85
437 472 7.503549 TCCTTCCGTTCTAAAATAGATAACCC 58.496 38.462 0.00 0.00 34.22 4.11
438 473 7.126115 TCCTTCCGTTCTAAAATAGATAACCCA 59.874 37.037 0.00 0.00 34.22 4.51
439 474 7.771826 CCTTCCGTTCTAAAATAGATAACCCAA 59.228 37.037 0.00 0.00 34.22 4.12
440 475 8.496707 TTCCGTTCTAAAATAGATAACCCAAC 57.503 34.615 0.00 0.00 34.22 3.77
441 476 7.854337 TCCGTTCTAAAATAGATAACCCAACT 58.146 34.615 0.00 0.00 34.22 3.16
442 477 8.323567 TCCGTTCTAAAATAGATAACCCAACTT 58.676 33.333 0.00 0.00 34.22 2.66
443 478 8.953313 CCGTTCTAAAATAGATAACCCAACTTT 58.047 33.333 0.00 0.00 34.22 2.66
444 479 9.769093 CGTTCTAAAATAGATAACCCAACTTTG 57.231 33.333 0.00 0.00 34.22 2.77
481 516 8.432805 AGTATAAAGTTGGGTCATCTATTCTGG 58.567 37.037 0.00 0.00 0.00 3.86
482 517 5.779241 AAAGTTGGGTCATCTATTCTGGA 57.221 39.130 0.00 0.00 0.00 3.86
483 518 5.779241 AAGTTGGGTCATCTATTCTGGAA 57.221 39.130 0.00 0.00 0.00 3.53
484 519 5.104259 AGTTGGGTCATCTATTCTGGAAC 57.896 43.478 0.00 0.00 0.00 3.62
485 520 3.819564 TGGGTCATCTATTCTGGAACG 57.180 47.619 0.00 0.00 0.00 3.95
486 521 2.434336 TGGGTCATCTATTCTGGAACGG 59.566 50.000 0.00 0.00 0.00 4.44
487 522 2.698797 GGGTCATCTATTCTGGAACGGA 59.301 50.000 0.00 0.00 45.11 4.69
515 550 1.608590 CAAAGCGATGTGAAACTGGGT 59.391 47.619 0.00 0.00 38.04 4.51
553 588 1.663702 GCACGCACAGTCGTACCTT 60.664 57.895 0.00 0.00 41.21 3.50
554 589 1.615107 GCACGCACAGTCGTACCTTC 61.615 60.000 0.00 0.00 41.21 3.46
591 626 0.762418 ATGTGTCGGGAGTCCAACAA 59.238 50.000 15.94 8.83 0.00 2.83
718 768 2.436292 CCCTCTGAGCAGCTGCAC 60.436 66.667 38.24 32.47 45.16 4.57
725 783 2.094494 TCTGAGCAGCTGCACTAGTAAC 60.094 50.000 38.24 18.44 45.16 2.50
764 822 4.270808 ACTCGTAGGGTTTGTTAAACAACG 59.729 41.667 7.25 7.25 43.15 4.10
850 920 3.670359 GCTAGCAGCTAGTCATCGATCTG 60.670 52.174 27.00 0.00 38.45 2.90
910 980 0.036388 TAAGAGCCCAACAAGCCTCG 60.036 55.000 0.00 0.00 0.00 4.63
930 1000 1.567357 GCCTTCCTCCTCTCTTCACT 58.433 55.000 0.00 0.00 0.00 3.41
959 1031 4.722700 CACCCCTTCACCAGCCCG 62.723 72.222 0.00 0.00 0.00 6.13
1024 1096 4.023107 TGACTACTGTCCGAGTTCTTCTTG 60.023 45.833 0.00 0.00 42.28 3.02
1068 1143 4.079961 GCCCTTGGCCATCCCCTT 62.080 66.667 6.09 0.00 44.06 3.95
1077 1152 1.831286 CCATCCCCTTGCTCATGCC 60.831 63.158 0.00 0.00 38.71 4.40
1083 1158 2.831742 CTTGCTCATGCCCGCCAT 60.832 61.111 0.00 0.00 38.71 4.40
1093 1168 2.187946 CCCGCCATGGTGAGTCTC 59.812 66.667 27.12 0.00 35.15 3.36
1109 1184 8.378565 TGGTGAGTCTCATTTTTCTCTTCTTAT 58.621 33.333 5.68 0.00 0.00 1.73
1110 1185 9.225436 GGTGAGTCTCATTTTTCTCTTCTTATT 57.775 33.333 5.68 0.00 0.00 1.40
1124 1199 9.658799 TTCTCTTCTTATTTGAATCGTTCATCT 57.341 29.630 2.09 0.00 39.84 2.90
1125 1200 9.307121 TCTCTTCTTATTTGAATCGTTCATCTC 57.693 33.333 2.09 0.00 39.84 2.75
1126 1201 9.091784 CTCTTCTTATTTGAATCGTTCATCTCA 57.908 33.333 2.09 0.00 39.84 3.27
1127 1202 9.435688 TCTTCTTATTTGAATCGTTCATCTCAA 57.564 29.630 2.09 0.00 39.84 3.02
1128 1203 9.699985 CTTCTTATTTGAATCGTTCATCTCAAG 57.300 33.333 2.09 4.53 39.84 3.02
1129 1204 8.777865 TCTTATTTGAATCGTTCATCTCAAGT 57.222 30.769 2.09 0.00 39.84 3.16
1130 1205 9.219603 TCTTATTTGAATCGTTCATCTCAAGTT 57.780 29.630 2.09 0.00 39.84 2.66
1131 1206 9.831737 CTTATTTGAATCGTTCATCTCAAGTTT 57.168 29.630 2.09 0.00 39.84 2.66
1132 1207 9.611284 TTATTTGAATCGTTCATCTCAAGTTTG 57.389 29.630 2.09 0.00 39.84 2.93
1133 1208 6.618287 TTGAATCGTTCATCTCAAGTTTGT 57.382 33.333 2.09 0.00 39.84 2.83
1134 1209 7.722795 TTGAATCGTTCATCTCAAGTTTGTA 57.277 32.000 2.09 0.00 39.84 2.41
1135 1210 7.905604 TGAATCGTTCATCTCAAGTTTGTAT 57.094 32.000 0.00 0.00 34.08 2.29
1136 1211 8.322906 TGAATCGTTCATCTCAAGTTTGTATT 57.677 30.769 0.00 0.00 34.08 1.89
1137 1212 9.430623 TGAATCGTTCATCTCAAGTTTGTATTA 57.569 29.630 0.00 0.00 34.08 0.98
1138 1213 9.690434 GAATCGTTCATCTCAAGTTTGTATTAC 57.310 33.333 0.00 0.00 0.00 1.89
1139 1214 9.436957 AATCGTTCATCTCAAGTTTGTATTACT 57.563 29.630 0.00 0.00 0.00 2.24
1140 1215 8.462143 TCGTTCATCTCAAGTTTGTATTACTC 57.538 34.615 0.00 0.00 0.00 2.59
1141 1216 7.544566 TCGTTCATCTCAAGTTTGTATTACTCC 59.455 37.037 0.00 0.00 0.00 3.85
1142 1217 7.201530 CGTTCATCTCAAGTTTGTATTACTCCC 60.202 40.741 0.00 0.00 0.00 4.30
1143 1218 6.650120 TCATCTCAAGTTTGTATTACTCCCC 58.350 40.000 0.00 0.00 0.00 4.81
1144 1219 5.080969 TCTCAAGTTTGTATTACTCCCCG 57.919 43.478 0.00 0.00 0.00 5.73
1145 1220 3.602483 TCAAGTTTGTATTACTCCCCGC 58.398 45.455 0.00 0.00 0.00 6.13
1146 1221 2.681344 CAAGTTTGTATTACTCCCCGCC 59.319 50.000 0.00 0.00 0.00 6.13
1147 1222 1.910671 AGTTTGTATTACTCCCCGCCA 59.089 47.619 0.00 0.00 0.00 5.69
1148 1223 2.306512 AGTTTGTATTACTCCCCGCCAA 59.693 45.455 0.00 0.00 0.00 4.52
1149 1224 2.681344 GTTTGTATTACTCCCCGCCAAG 59.319 50.000 0.00 0.00 0.00 3.61
1150 1225 1.868713 TGTATTACTCCCCGCCAAGA 58.131 50.000 0.00 0.00 0.00 3.02
1151 1226 2.404559 TGTATTACTCCCCGCCAAGAT 58.595 47.619 0.00 0.00 0.00 2.40
1152 1227 2.775384 TGTATTACTCCCCGCCAAGATT 59.225 45.455 0.00 0.00 0.00 2.40
1153 1228 3.201266 TGTATTACTCCCCGCCAAGATTT 59.799 43.478 0.00 0.00 0.00 2.17
1154 1229 2.413310 TTACTCCCCGCCAAGATTTC 57.587 50.000 0.00 0.00 0.00 2.17
1162 1237 3.450817 CCCCGCCAAGATTTCCTTATTTT 59.549 43.478 0.00 0.00 32.86 1.82
1167 1242 7.417342 CCCGCCAAGATTTCCTTATTTTCATTA 60.417 37.037 0.00 0.00 32.86 1.90
1192 1267 8.738645 ATTCATCTCAAGTTTGTATTACTCCC 57.261 34.615 0.00 0.00 0.00 4.30
1194 1269 7.556844 TCATCTCAAGTTTGTATTACTCCCTC 58.443 38.462 0.00 0.00 0.00 4.30
1195 1270 6.295719 TCTCAAGTTTGTATTACTCCCTCC 57.704 41.667 0.00 0.00 0.00 4.30
1196 1271 5.080969 TCAAGTTTGTATTACTCCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
1197 1272 4.529377 TCAAGTTTGTATTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
1198 1273 4.732672 AGTTTGTATTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
1199 1274 3.450096 AGTTTGTATTACTCCCTCCGTCC 59.550 47.826 0.00 0.00 0.00 4.79
1200 1275 2.077687 TGTATTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
1201 1276 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
1202 1277 2.090943 TGTATTACTCCCTCCGTCCCAT 60.091 50.000 0.00 0.00 0.00 4.00
1203 1278 3.140707 TGTATTACTCCCTCCGTCCCATA 59.859 47.826 0.00 0.00 0.00 2.74
1204 1279 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
1205 1280 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
1206 1281 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
1207 1282 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1208 1283 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1209 1284 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1210 1285 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1211 1286 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1212 1287 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1213 1288 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1214 1289 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1215 1290 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1216 1291 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1217 1292 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1218 1293 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1219 1294 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1220 1295 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
1221 1296 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
1222 1297 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
1223 1298 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1224 1299 8.567948 CCCATAATATAAGAGCGTTTTTGACAT 58.432 33.333 0.00 0.00 0.00 3.06
1225 1300 9.950680 CCATAATATAAGAGCGTTTTTGACATT 57.049 29.630 0.00 0.00 0.00 2.71
1233 1308 4.681744 AGCGTTTTTGACATTGTCACAAT 58.318 34.783 18.84 0.00 42.60 2.71
1268 1343 4.154942 TGATCTCACCAGCTGCTCATATA 58.845 43.478 8.66 0.00 0.00 0.86
1291 1366 2.746697 TTCTCGCAGTGAAGGACCT 58.253 52.632 0.00 0.00 34.94 3.85
1292 1367 0.318441 TTCTCGCAGTGAAGGACCTG 59.682 55.000 0.00 0.00 34.94 4.00
1293 1368 0.827925 TCTCGCAGTGAAGGACCTGT 60.828 55.000 0.00 0.00 0.00 4.00
1324 1399 0.611062 ACCGGTGATTCCTCGTCTGA 60.611 55.000 6.12 0.00 0.00 3.27
1436 1511 1.742268 GGATCTGCTGAACCAAGCTTC 59.258 52.381 14.00 0.00 43.90 3.86
1482 1557 0.249398 GTCTGATAAGGTGGCCGTGT 59.751 55.000 0.00 0.00 0.00 4.49
1555 1630 1.003112 CCGTCCGGAATGGGTGAAA 60.003 57.895 5.23 0.00 38.76 2.69
1675 1752 8.679100 ATGTGTACATATAGTTAGCTAGCTAGC 58.321 37.037 33.96 33.96 41.20 3.42
1726 1803 8.718102 TTTGTTATCTGATTTAGAGTAGTGGC 57.282 34.615 0.00 0.00 39.20 5.01
1767 1851 2.364002 GCCCCTCTCTAGCTAGTTTCTG 59.636 54.545 20.10 7.79 0.00 3.02
1809 1893 2.188062 GGAGATCCGAGTATCCGACT 57.812 55.000 0.00 0.00 42.90 4.18
1810 1894 3.331478 GGAGATCCGAGTATCCGACTA 57.669 52.381 0.00 0.00 39.06 2.59
1882 1966 8.547967 ACCACACTTTTTCTATACATACACAG 57.452 34.615 0.00 0.00 0.00 3.66
1909 1994 9.807921 TTTATTCTTCTACTTTGAAGGGTCAAT 57.192 29.630 4.71 1.05 43.29 2.57
1910 1995 7.693969 ATTCTTCTACTTTGAAGGGTCAATG 57.306 36.000 4.71 1.94 43.29 2.82
1911 1996 5.003804 TCTTCTACTTTGAAGGGTCAATGC 58.996 41.667 4.71 0.00 43.29 3.56
1912 1997 3.686016 TCTACTTTGAAGGGTCAATGCC 58.314 45.455 3.11 0.00 43.29 4.40
1913 1998 2.683211 ACTTTGAAGGGTCAATGCCT 57.317 45.000 3.11 0.00 43.29 4.75
1914 1999 2.519013 ACTTTGAAGGGTCAATGCCTC 58.481 47.619 3.11 0.00 43.29 4.70
1915 2000 2.158475 ACTTTGAAGGGTCAATGCCTCA 60.158 45.455 3.11 0.00 43.29 3.86
1916 2001 2.673775 TTGAAGGGTCAATGCCTCAA 57.326 45.000 0.00 0.00 38.88 3.02
1917 2002 2.905415 TGAAGGGTCAATGCCTCAAT 57.095 45.000 0.00 0.00 0.00 2.57
1949 2034 7.589958 TTAAGCCAAAGGAAATCTTAACACA 57.410 32.000 0.00 0.00 34.78 3.72
1955 2040 7.661040 CCAAAGGAAATCTTAACACATGTTCT 58.339 34.615 0.00 0.00 39.31 3.01
1956 2041 7.809806 CCAAAGGAAATCTTAACACATGTTCTC 59.190 37.037 0.00 0.00 39.31 2.87
2010 2102 2.605338 CGGATGGTCACAGTTGCAAAAG 60.605 50.000 0.00 0.00 0.00 2.27
2011 2103 2.622942 GGATGGTCACAGTTGCAAAAGA 59.377 45.455 0.00 0.00 0.00 2.52
2012 2104 3.068024 GGATGGTCACAGTTGCAAAAGAA 59.932 43.478 0.00 0.00 0.00 2.52
2013 2105 4.441356 GGATGGTCACAGTTGCAAAAGAAA 60.441 41.667 0.00 0.00 0.00 2.52
2100 2192 7.979115 TTTTTGAAGGAAATCTTAACACACG 57.021 32.000 0.00 0.00 35.50 4.49
2101 2193 6.928979 TTTGAAGGAAATCTTAACACACGA 57.071 33.333 0.00 0.00 35.50 4.35
2102 2194 6.539649 TTGAAGGAAATCTTAACACACGAG 57.460 37.500 0.00 0.00 35.50 4.18
2103 2195 5.607477 TGAAGGAAATCTTAACACACGAGT 58.393 37.500 0.00 0.00 35.50 4.18
2104 2196 6.053005 TGAAGGAAATCTTAACACACGAGTT 58.947 36.000 0.00 0.00 35.50 3.01
2105 2197 6.202188 TGAAGGAAATCTTAACACACGAGTTC 59.798 38.462 0.00 0.00 35.50 3.01
2106 2198 4.684703 AGGAAATCTTAACACACGAGTTCG 59.315 41.667 0.00 0.00 46.33 3.95
2107 2199 4.682860 GGAAATCTTAACACACGAGTTCGA 59.317 41.667 8.72 0.00 43.02 3.71
2108 2200 5.176223 GGAAATCTTAACACACGAGTTCGAA 59.824 40.000 8.72 0.00 43.02 3.71
2109 2201 6.292488 GGAAATCTTAACACACGAGTTCGAAA 60.292 38.462 8.72 0.00 43.02 3.46
2110 2202 5.571778 ATCTTAACACACGAGTTCGAAAC 57.428 39.130 8.72 0.00 43.02 2.78
2111 2203 4.422840 TCTTAACACACGAGTTCGAAACA 58.577 39.130 8.72 0.00 43.02 2.83
2112 2204 4.863689 TCTTAACACACGAGTTCGAAACAA 59.136 37.500 8.72 0.00 43.02 2.83
2113 2205 5.521010 TCTTAACACACGAGTTCGAAACAAT 59.479 36.000 8.72 0.00 43.02 2.71
2114 2206 6.696583 TCTTAACACACGAGTTCGAAACAATA 59.303 34.615 8.72 0.00 43.02 1.90
2115 2207 5.721876 AACACACGAGTTCGAAACAATAA 57.278 34.783 8.72 0.00 43.02 1.40
2116 2208 5.721876 ACACACGAGTTCGAAACAATAAA 57.278 34.783 8.72 0.00 43.02 1.40
2117 2209 6.109320 ACACACGAGTTCGAAACAATAAAA 57.891 33.333 8.72 0.00 43.02 1.52
2118 2210 6.721321 ACACACGAGTTCGAAACAATAAAAT 58.279 32.000 8.72 0.00 43.02 1.82
2119 2211 6.631238 ACACACGAGTTCGAAACAATAAAATG 59.369 34.615 8.72 0.00 43.02 2.32
2120 2212 6.631238 CACACGAGTTCGAAACAATAAAATGT 59.369 34.615 8.72 0.00 43.02 2.71
2121 2213 7.165154 CACACGAGTTCGAAACAATAAAATGTT 59.835 33.333 8.72 0.00 42.92 2.71
2122 2214 7.375017 ACACGAGTTCGAAACAATAAAATGTTC 59.625 33.333 8.72 0.00 41.55 3.18
2123 2215 6.854381 ACGAGTTCGAAACAATAAAATGTTCC 59.146 34.615 8.72 0.00 41.55 3.62
2124 2216 6.853872 CGAGTTCGAAACAATAAAATGTTCCA 59.146 34.615 0.00 0.00 42.49 3.53
2125 2217 7.537306 CGAGTTCGAAACAATAAAATGTTCCAT 59.463 33.333 0.00 0.00 42.49 3.41
2126 2218 8.742554 AGTTCGAAACAATAAAATGTTCCATC 57.257 30.769 0.00 0.00 42.49 3.51
2127 2219 8.576442 AGTTCGAAACAATAAAATGTTCCATCT 58.424 29.630 0.00 0.00 42.49 2.90
2128 2220 9.834628 GTTCGAAACAATAAAATGTTCCATCTA 57.165 29.630 0.00 0.00 42.49 1.98
2179 2271 9.213799 ACACAAAGAAAATTTTAACACACATGT 57.786 25.926 2.75 0.00 42.46 3.21
2194 2286 6.241835 CACACATGTGTTACAAAAAGAACG 57.758 37.500 28.64 9.07 42.83 3.95
2195 2287 4.796312 ACACATGTGTTACAAAAAGAACGC 59.204 37.500 25.76 0.00 41.83 4.84
2196 2288 4.206200 CACATGTGTTACAAAAAGAACGCC 59.794 41.667 18.03 0.00 35.63 5.68
2197 2289 4.142359 ACATGTGTTACAAAAAGAACGCCA 60.142 37.500 0.00 0.00 35.63 5.69
2198 2290 4.436242 TGTGTTACAAAAAGAACGCCAA 57.564 36.364 0.00 0.00 35.63 4.52
2199 2291 5.000012 TGTGTTACAAAAAGAACGCCAAT 58.000 34.783 0.00 0.00 35.63 3.16
2200 2292 6.132791 TGTGTTACAAAAAGAACGCCAATA 57.867 33.333 0.00 0.00 35.63 1.90
2201 2293 6.561614 TGTGTTACAAAAAGAACGCCAATAA 58.438 32.000 0.00 0.00 35.63 1.40
2202 2294 7.203910 TGTGTTACAAAAAGAACGCCAATAAT 58.796 30.769 0.00 0.00 35.63 1.28
2203 2295 7.707035 TGTGTTACAAAAAGAACGCCAATAATT 59.293 29.630 0.00 0.00 35.63 1.40
2204 2296 8.001549 GTGTTACAAAAAGAACGCCAATAATTG 58.998 33.333 0.00 0.00 31.33 2.32
2215 2307 3.369546 CCAATAATTGGCCATCGTTCC 57.630 47.619 6.09 0.00 45.17 3.62
2216 2308 2.035832 CCAATAATTGGCCATCGTTCCC 59.964 50.000 6.09 0.00 45.17 3.97
2217 2309 2.958355 CAATAATTGGCCATCGTTCCCT 59.042 45.455 6.09 0.00 0.00 4.20
2218 2310 4.141287 CAATAATTGGCCATCGTTCCCTA 58.859 43.478 6.09 0.00 0.00 3.53
2219 2311 2.348411 AATTGGCCATCGTTCCCTAG 57.652 50.000 6.09 0.00 0.00 3.02
2220 2312 0.474184 ATTGGCCATCGTTCCCTAGG 59.526 55.000 6.09 0.06 0.00 3.02
2221 2313 1.632018 TTGGCCATCGTTCCCTAGGG 61.632 60.000 23.22 23.22 0.00 3.53
2222 2314 1.764854 GGCCATCGTTCCCTAGGGA 60.765 63.158 27.73 27.73 43.52 4.20
2223 2315 1.749033 GCCATCGTTCCCTAGGGAG 59.251 63.158 29.40 19.58 46.06 4.30
2224 2316 1.749033 CCATCGTTCCCTAGGGAGC 59.251 63.158 29.94 29.94 46.06 4.70
2225 2317 0.760945 CCATCGTTCCCTAGGGAGCT 60.761 60.000 34.12 19.34 46.06 4.09
2226 2318 0.390860 CATCGTTCCCTAGGGAGCTG 59.609 60.000 34.12 27.58 46.06 4.24
2227 2319 1.403687 ATCGTTCCCTAGGGAGCTGC 61.404 60.000 34.12 22.32 46.06 5.25
2228 2320 2.060980 CGTTCCCTAGGGAGCTGCT 61.061 63.158 34.12 0.00 46.06 4.24
2229 2321 1.826709 GTTCCCTAGGGAGCTGCTC 59.173 63.158 31.74 21.17 46.06 4.26
2238 2330 2.486796 GGAGCTGCTCCCATTGAAC 58.513 57.895 33.62 9.73 44.36 3.18
2239 2331 0.322816 GGAGCTGCTCCCATTGAACA 60.323 55.000 33.62 0.00 44.36 3.18
2240 2332 1.684248 GGAGCTGCTCCCATTGAACAT 60.684 52.381 33.62 0.00 44.36 2.71
2241 2333 2.097825 GAGCTGCTCCCATTGAACATT 58.902 47.619 18.80 0.00 0.00 2.71
2242 2334 2.494870 GAGCTGCTCCCATTGAACATTT 59.505 45.455 18.80 0.00 0.00 2.32
2243 2335 2.901839 AGCTGCTCCCATTGAACATTTT 59.098 40.909 0.00 0.00 0.00 1.82
2244 2336 3.056322 AGCTGCTCCCATTGAACATTTTC 60.056 43.478 0.00 0.00 0.00 2.29
2245 2337 3.504863 CTGCTCCCATTGAACATTTTCG 58.495 45.455 0.00 0.00 34.04 3.46
2246 2338 2.890311 TGCTCCCATTGAACATTTTCGT 59.110 40.909 0.00 0.00 34.04 3.85
2247 2339 3.320541 TGCTCCCATTGAACATTTTCGTT 59.679 39.130 0.00 0.00 34.04 3.85
2248 2340 3.920412 GCTCCCATTGAACATTTTCGTTC 59.080 43.478 0.00 0.00 44.56 3.95
2249 2341 4.153958 TCCCATTGAACATTTTCGTTCG 57.846 40.909 0.00 0.00 46.77 3.95
2250 2342 2.661195 CCCATTGAACATTTTCGTTCGC 59.339 45.455 0.00 0.00 46.77 4.70
2251 2343 2.661195 CCATTGAACATTTTCGTTCGCC 59.339 45.455 0.00 0.00 46.77 5.54
2252 2344 3.304257 CATTGAACATTTTCGTTCGCCA 58.696 40.909 0.00 0.00 46.77 5.69
2253 2345 3.422417 TTGAACATTTTCGTTCGCCAA 57.578 38.095 0.00 0.00 46.77 4.52
2254 2346 2.993545 TGAACATTTTCGTTCGCCAAG 58.006 42.857 0.00 0.00 46.77 3.61
2255 2347 2.287308 TGAACATTTTCGTTCGCCAAGG 60.287 45.455 0.00 0.00 46.77 3.61
2256 2348 0.596082 ACATTTTCGTTCGCCAAGGG 59.404 50.000 0.00 0.00 0.00 3.95
2257 2349 0.878416 CATTTTCGTTCGCCAAGGGA 59.122 50.000 0.00 0.00 0.00 4.20
2258 2350 1.135689 CATTTTCGTTCGCCAAGGGAG 60.136 52.381 0.00 0.00 0.00 4.30
2259 2351 1.512156 TTTTCGTTCGCCAAGGGAGC 61.512 55.000 0.00 0.00 0.00 4.70
2260 2352 2.668185 TTTCGTTCGCCAAGGGAGCA 62.668 55.000 0.00 0.00 0.00 4.26
2261 2353 3.121030 CGTTCGCCAAGGGAGCAG 61.121 66.667 0.00 0.00 0.00 4.24
2262 2354 3.435186 GTTCGCCAAGGGAGCAGC 61.435 66.667 0.00 0.00 0.00 5.25
2263 2355 3.640407 TTCGCCAAGGGAGCAGCT 61.640 61.111 0.00 0.00 0.00 4.24
2264 2356 3.612247 TTCGCCAAGGGAGCAGCTC 62.612 63.158 14.69 14.69 0.00 4.09
2288 2380 3.788672 GAATGATTCGACCAGCCCT 57.211 52.632 0.00 0.00 0.00 5.19
2289 2381 1.587547 GAATGATTCGACCAGCCCTC 58.412 55.000 0.00 0.00 0.00 4.30
2290 2382 0.179073 AATGATTCGACCAGCCCTCG 60.179 55.000 0.00 0.00 0.00 4.63
2291 2383 1.043116 ATGATTCGACCAGCCCTCGA 61.043 55.000 0.00 0.00 38.38 4.04
2292 2384 1.043116 TGATTCGACCAGCCCTCGAT 61.043 55.000 0.00 0.00 39.79 3.59
2293 2385 0.105039 GATTCGACCAGCCCTCGATT 59.895 55.000 0.00 0.00 39.79 3.34
2294 2386 0.179073 ATTCGACCAGCCCTCGATTG 60.179 55.000 0.00 0.00 39.79 2.67
2295 2387 1.254975 TTCGACCAGCCCTCGATTGA 61.255 55.000 0.00 0.00 39.79 2.57
2296 2388 1.043116 TCGACCAGCCCTCGATTGAT 61.043 55.000 0.00 0.00 35.26 2.57
2297 2389 0.598680 CGACCAGCCCTCGATTGATC 60.599 60.000 0.00 0.00 32.65 2.92
2306 2398 4.350620 CGATTGATCGCCAGGAGG 57.649 61.111 0.00 0.00 43.84 4.30
2307 2399 1.742146 CGATTGATCGCCAGGAGGA 59.258 57.895 0.00 0.00 43.84 3.71
2308 2400 0.319383 CGATTGATCGCCAGGAGGAG 60.319 60.000 0.00 0.00 43.84 3.69
2309 2401 0.034616 GATTGATCGCCAGGAGGAGG 59.965 60.000 0.00 0.00 36.89 4.30
2317 2409 3.406200 CAGGAGGAGGCCCTGTGG 61.406 72.222 0.00 0.00 44.53 4.17
2327 2419 4.232061 CCCTGTGGCAAACCCCCA 62.232 66.667 0.00 0.00 33.59 4.96
2328 2420 2.120274 CCTGTGGCAAACCCCCAT 59.880 61.111 0.00 0.00 34.34 4.00
2329 2421 1.536174 CCTGTGGCAAACCCCCATT 60.536 57.895 0.00 0.00 34.34 3.16
2330 2422 1.672898 CTGTGGCAAACCCCCATTG 59.327 57.895 0.00 0.00 34.34 2.82
2331 2423 1.829523 CTGTGGCAAACCCCCATTGG 61.830 60.000 0.00 0.00 34.34 3.16
2351 2443 1.539157 GCTAGAAGCCCAGTTTTGCT 58.461 50.000 0.00 0.00 40.17 3.91
2352 2444 2.711542 GCTAGAAGCCCAGTTTTGCTA 58.288 47.619 0.00 0.00 36.66 3.49
2353 2445 2.420372 GCTAGAAGCCCAGTTTTGCTAC 59.580 50.000 0.00 0.00 36.66 3.58
2354 2446 2.959465 AGAAGCCCAGTTTTGCTACT 57.041 45.000 0.00 0.00 36.66 2.57
2355 2447 3.229697 AGAAGCCCAGTTTTGCTACTT 57.770 42.857 0.00 0.00 36.66 2.24
2356 2448 3.566351 AGAAGCCCAGTTTTGCTACTTT 58.434 40.909 0.00 0.00 36.66 2.66
2357 2449 3.960755 AGAAGCCCAGTTTTGCTACTTTT 59.039 39.130 0.00 0.00 36.66 2.27
2358 2450 5.137551 AGAAGCCCAGTTTTGCTACTTTTA 58.862 37.500 0.00 0.00 36.66 1.52
2359 2451 5.596772 AGAAGCCCAGTTTTGCTACTTTTAA 59.403 36.000 0.00 0.00 36.66 1.52
2360 2452 5.862678 AGCCCAGTTTTGCTACTTTTAAA 57.137 34.783 0.00 0.00 35.69 1.52
2361 2453 6.419484 AGCCCAGTTTTGCTACTTTTAAAT 57.581 33.333 0.00 0.00 35.69 1.40
2362 2454 6.223120 AGCCCAGTTTTGCTACTTTTAAATG 58.777 36.000 0.00 0.00 35.69 2.32
2363 2455 6.041523 AGCCCAGTTTTGCTACTTTTAAATGA 59.958 34.615 8.00 0.00 35.69 2.57
2364 2456 6.145534 GCCCAGTTTTGCTACTTTTAAATGAC 59.854 38.462 8.00 0.00 0.00 3.06
2365 2457 7.206687 CCCAGTTTTGCTACTTTTAAATGACA 58.793 34.615 8.00 1.34 0.00 3.58
2366 2458 7.872483 CCCAGTTTTGCTACTTTTAAATGACAT 59.128 33.333 8.00 0.00 0.00 3.06
2367 2459 8.702438 CCAGTTTTGCTACTTTTAAATGACATG 58.298 33.333 8.00 0.00 0.00 3.21
2368 2460 9.462174 CAGTTTTGCTACTTTTAAATGACATGA 57.538 29.630 0.00 0.00 0.00 3.07
2414 2506 9.814899 TTAAAAACAGAGAAAAGCATGAAATCA 57.185 25.926 0.00 0.00 0.00 2.57
2415 2507 8.897872 AAAAACAGAGAAAAGCATGAAATCAT 57.102 26.923 0.00 0.00 36.96 2.45
2426 2518 0.939419 TGAAATCATGAGCGCCATCG 59.061 50.000 2.29 3.25 39.07 3.84
2427 2519 0.940126 GAAATCATGAGCGCCATCGT 59.060 50.000 2.29 0.00 38.14 3.73
2428 2520 2.135139 GAAATCATGAGCGCCATCGTA 58.865 47.619 2.29 0.00 38.14 3.43
2429 2521 2.462456 AATCATGAGCGCCATCGTAT 57.538 45.000 2.29 0.00 38.14 3.06
2430 2522 1.718396 ATCATGAGCGCCATCGTATG 58.282 50.000 2.29 0.10 38.14 2.39
2455 2547 9.575868 TGGAAAGTACTAATACAAAAACATCCA 57.424 29.630 0.00 0.00 33.30 3.41
2458 2550 9.855021 AAAGTACTAATACAAAAACATCCATGC 57.145 29.630 0.00 0.00 33.30 4.06
2459 2551 8.807948 AGTACTAATACAAAAACATCCATGCT 57.192 30.769 0.00 0.00 33.30 3.79
2460 2552 8.677300 AGTACTAATACAAAAACATCCATGCTG 58.323 33.333 0.00 0.00 33.30 4.41
2461 2553 7.466746 ACTAATACAAAAACATCCATGCTGT 57.533 32.000 0.00 0.00 0.00 4.40
2462 2554 7.315142 ACTAATACAAAAACATCCATGCTGTG 58.685 34.615 0.49 0.00 0.00 3.66
2463 2555 5.981088 ATACAAAAACATCCATGCTGTGA 57.019 34.783 0.49 0.00 0.00 3.58
2464 2556 4.669206 ACAAAAACATCCATGCTGTGAA 57.331 36.364 0.49 0.00 0.00 3.18
2465 2557 5.021033 ACAAAAACATCCATGCTGTGAAA 57.979 34.783 0.49 0.00 0.00 2.69
2466 2558 5.426504 ACAAAAACATCCATGCTGTGAAAA 58.573 33.333 0.49 0.00 0.00 2.29
2467 2559 6.056884 ACAAAAACATCCATGCTGTGAAAAT 58.943 32.000 0.49 0.00 0.00 1.82
2468 2560 7.215789 ACAAAAACATCCATGCTGTGAAAATA 58.784 30.769 0.49 0.00 0.00 1.40
2469 2561 7.714377 ACAAAAACATCCATGCTGTGAAAATAA 59.286 29.630 0.49 0.00 0.00 1.40
2470 2562 8.557864 CAAAAACATCCATGCTGTGAAAATAAA 58.442 29.630 0.49 0.00 0.00 1.40
2471 2563 8.674263 AAAACATCCATGCTGTGAAAATAAAA 57.326 26.923 0.49 0.00 0.00 1.52
2472 2564 8.674263 AAACATCCATGCTGTGAAAATAAAAA 57.326 26.923 0.49 0.00 0.00 1.94
2473 2565 8.851541 AACATCCATGCTGTGAAAATAAAAAT 57.148 26.923 0.49 0.00 0.00 1.82
2474 2566 9.941325 AACATCCATGCTGTGAAAATAAAAATA 57.059 25.926 0.49 0.00 0.00 1.40
2475 2567 9.941325 ACATCCATGCTGTGAAAATAAAAATAA 57.059 25.926 0.00 0.00 0.00 1.40
2511 2603 2.706339 AAATGCCACAAAAGTTGCCA 57.294 40.000 0.00 0.00 0.00 4.92
2512 2604 2.934886 AATGCCACAAAAGTTGCCAT 57.065 40.000 0.00 0.00 0.00 4.40
2513 2605 2.172851 ATGCCACAAAAGTTGCCATG 57.827 45.000 0.00 0.00 0.00 3.66
2514 2606 0.829333 TGCCACAAAAGTTGCCATGT 59.171 45.000 0.00 0.00 0.00 3.21
2515 2607 1.202510 TGCCACAAAAGTTGCCATGTC 60.203 47.619 0.00 0.00 0.00 3.06
2516 2608 1.873486 GCCACAAAAGTTGCCATGTCC 60.873 52.381 0.00 0.00 0.00 4.02
2517 2609 1.688197 CCACAAAAGTTGCCATGTCCT 59.312 47.619 0.00 0.00 0.00 3.85
2518 2610 2.890311 CCACAAAAGTTGCCATGTCCTA 59.110 45.455 0.00 0.00 0.00 2.94
2519 2611 3.320541 CCACAAAAGTTGCCATGTCCTAA 59.679 43.478 0.00 0.00 0.00 2.69
2520 2612 4.021192 CCACAAAAGTTGCCATGTCCTAAT 60.021 41.667 0.00 0.00 0.00 1.73
2521 2613 5.163513 CACAAAAGTTGCCATGTCCTAATC 58.836 41.667 0.00 0.00 0.00 1.75
2522 2614 4.832266 ACAAAAGTTGCCATGTCCTAATCA 59.168 37.500 0.00 0.00 0.00 2.57
2523 2615 5.304101 ACAAAAGTTGCCATGTCCTAATCAA 59.696 36.000 0.00 0.00 0.00 2.57
2524 2616 5.391312 AAAGTTGCCATGTCCTAATCAAC 57.609 39.130 0.00 0.00 35.39 3.18
2525 2617 4.032960 AGTTGCCATGTCCTAATCAACA 57.967 40.909 0.00 0.00 37.02 3.33
2526 2618 3.758554 AGTTGCCATGTCCTAATCAACAC 59.241 43.478 0.00 0.00 37.02 3.32
2527 2619 2.722094 TGCCATGTCCTAATCAACACC 58.278 47.619 0.00 0.00 0.00 4.16
2528 2620 2.024414 GCCATGTCCTAATCAACACCC 58.976 52.381 0.00 0.00 0.00 4.61
2529 2621 2.620367 GCCATGTCCTAATCAACACCCA 60.620 50.000 0.00 0.00 0.00 4.51
2530 2622 3.696045 CCATGTCCTAATCAACACCCAA 58.304 45.455 0.00 0.00 0.00 4.12
2531 2623 4.085733 CCATGTCCTAATCAACACCCAAA 58.914 43.478 0.00 0.00 0.00 3.28
2532 2624 4.526262 CCATGTCCTAATCAACACCCAAAA 59.474 41.667 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.048222 ATCAGGTGTGCCACGTCG 60.048 61.111 0.00 0.00 34.83 5.12
36 37 3.118775 TCGACCGATGAGAAAATCCACAT 60.119 43.478 0.00 0.00 0.00 3.21
108 109 5.726980 ATTTAGGCATGTTTGTGACACAT 57.273 34.783 9.55 0.00 42.04 3.21
209 216 2.413239 CGAATAAACCACTGCAGCTGTG 60.413 50.000 22.28 22.28 33.98 3.66
210 217 1.806542 CGAATAAACCACTGCAGCTGT 59.193 47.619 15.27 8.40 0.00 4.40
225 232 3.272581 GGTTCCCGAATTCCAACGAATA 58.727 45.455 0.00 0.00 37.76 1.75
226 233 2.089201 GGTTCCCGAATTCCAACGAAT 58.911 47.619 0.00 0.00 40.58 3.34
256 284 6.506500 AAAACTATGCAGTTCAGGAATCTG 57.493 37.500 0.00 7.04 44.41 2.90
289 317 4.891992 TCCAACCAACCTTCAAAACAAA 57.108 36.364 0.00 0.00 0.00 2.83
292 320 4.100963 AGGAATCCAACCAACCTTCAAAAC 59.899 41.667 0.61 0.00 0.00 2.43
293 321 4.294347 AGGAATCCAACCAACCTTCAAAA 58.706 39.130 0.61 0.00 0.00 2.44
316 344 7.323656 CGAGTGAGTTTTAAAGGTTAAGCATTG 59.676 37.037 7.52 0.00 0.00 2.82
327 355 3.673809 CGACCCTCGAGTGAGTTTTAAAG 59.326 47.826 12.31 0.00 43.74 1.85
391 426 2.703675 TACCTATCTCCCGGTCCCGC 62.704 65.000 0.00 0.00 38.24 6.13
410 445 8.202811 GGTTATCTATTTTAGAACGGAAGGAGT 58.797 37.037 0.00 0.00 38.50 3.85
411 446 7.656542 GGGTTATCTATTTTAGAACGGAAGGAG 59.343 40.741 0.00 0.00 38.50 3.69
412 447 7.126115 TGGGTTATCTATTTTAGAACGGAAGGA 59.874 37.037 0.00 0.00 38.50 3.36
413 448 7.277396 TGGGTTATCTATTTTAGAACGGAAGG 58.723 38.462 0.00 0.00 38.50 3.46
414 449 8.610035 GTTGGGTTATCTATTTTAGAACGGAAG 58.390 37.037 0.00 0.00 38.50 3.46
415 450 8.323567 AGTTGGGTTATCTATTTTAGAACGGAA 58.676 33.333 0.00 0.00 38.50 4.30
416 451 7.854337 AGTTGGGTTATCTATTTTAGAACGGA 58.146 34.615 0.00 0.00 38.50 4.69
417 452 8.502105 AAGTTGGGTTATCTATTTTAGAACGG 57.498 34.615 0.00 0.00 38.50 4.44
418 453 9.769093 CAAAGTTGGGTTATCTATTTTAGAACG 57.231 33.333 0.00 0.00 38.50 3.95
455 490 8.432805 CCAGAATAGATGACCCAACTTTATACT 58.567 37.037 0.00 0.00 0.00 2.12
456 491 8.429641 TCCAGAATAGATGACCCAACTTTATAC 58.570 37.037 0.00 0.00 0.00 1.47
457 492 8.561536 TCCAGAATAGATGACCCAACTTTATA 57.438 34.615 0.00 0.00 0.00 0.98
458 493 7.451731 TCCAGAATAGATGACCCAACTTTAT 57.548 36.000 0.00 0.00 0.00 1.40
459 494 6.884472 TCCAGAATAGATGACCCAACTTTA 57.116 37.500 0.00 0.00 0.00 1.85
460 495 5.779241 TCCAGAATAGATGACCCAACTTT 57.221 39.130 0.00 0.00 0.00 2.66
461 496 5.501156 GTTCCAGAATAGATGACCCAACTT 58.499 41.667 0.00 0.00 0.00 2.66
462 497 4.383118 CGTTCCAGAATAGATGACCCAACT 60.383 45.833 0.00 0.00 0.00 3.16
463 498 3.871594 CGTTCCAGAATAGATGACCCAAC 59.128 47.826 0.00 0.00 0.00 3.77
464 499 3.118408 CCGTTCCAGAATAGATGACCCAA 60.118 47.826 0.00 0.00 0.00 4.12
465 500 2.434336 CCGTTCCAGAATAGATGACCCA 59.566 50.000 0.00 0.00 0.00 4.51
466 501 2.698797 TCCGTTCCAGAATAGATGACCC 59.301 50.000 0.00 0.00 0.00 4.46
467 502 3.637229 TCTCCGTTCCAGAATAGATGACC 59.363 47.826 0.00 0.00 0.00 4.02
468 503 4.920640 TCTCCGTTCCAGAATAGATGAC 57.079 45.455 0.00 0.00 0.00 3.06
469 504 6.543735 TCTATCTCCGTTCCAGAATAGATGA 58.456 40.000 10.63 6.13 0.00 2.92
470 505 6.825944 TCTATCTCCGTTCCAGAATAGATG 57.174 41.667 10.63 4.71 0.00 2.90
471 506 7.178573 TGATCTATCTCCGTTCCAGAATAGAT 58.821 38.462 0.00 0.00 34.10 1.98
472 507 6.543735 TGATCTATCTCCGTTCCAGAATAGA 58.456 40.000 0.00 0.00 0.00 1.98
473 508 6.825944 TGATCTATCTCCGTTCCAGAATAG 57.174 41.667 0.00 0.00 0.00 1.73
474 509 7.597288 TTTGATCTATCTCCGTTCCAGAATA 57.403 36.000 0.00 0.00 0.00 1.75
475 510 6.485830 TTTGATCTATCTCCGTTCCAGAAT 57.514 37.500 0.00 0.00 0.00 2.40
476 511 5.682471 GCTTTGATCTATCTCCGTTCCAGAA 60.682 44.000 0.00 0.00 0.00 3.02
477 512 4.202161 GCTTTGATCTATCTCCGTTCCAGA 60.202 45.833 0.00 0.00 0.00 3.86
478 513 4.054671 GCTTTGATCTATCTCCGTTCCAG 58.945 47.826 0.00 0.00 0.00 3.86
479 514 3.490933 CGCTTTGATCTATCTCCGTTCCA 60.491 47.826 0.00 0.00 0.00 3.53
480 515 3.053455 CGCTTTGATCTATCTCCGTTCC 58.947 50.000 0.00 0.00 0.00 3.62
481 516 3.966154 TCGCTTTGATCTATCTCCGTTC 58.034 45.455 0.00 0.00 0.00 3.95
482 517 4.202161 ACATCGCTTTGATCTATCTCCGTT 60.202 41.667 0.00 0.00 34.13 4.44
483 518 3.319405 ACATCGCTTTGATCTATCTCCGT 59.681 43.478 0.00 0.00 34.13 4.69
484 519 3.672397 CACATCGCTTTGATCTATCTCCG 59.328 47.826 0.00 0.00 34.13 4.63
485 520 4.876125 TCACATCGCTTTGATCTATCTCC 58.124 43.478 0.00 0.00 34.13 3.71
486 521 6.478344 AGTTTCACATCGCTTTGATCTATCTC 59.522 38.462 0.00 0.00 34.13 2.75
487 522 6.257411 CAGTTTCACATCGCTTTGATCTATCT 59.743 38.462 0.00 0.00 34.13 1.98
488 523 6.417327 CAGTTTCACATCGCTTTGATCTATC 58.583 40.000 0.00 0.00 34.13 2.08
489 524 5.295292 CCAGTTTCACATCGCTTTGATCTAT 59.705 40.000 0.00 0.00 34.13 1.98
490 525 4.631377 CCAGTTTCACATCGCTTTGATCTA 59.369 41.667 0.00 0.00 34.13 1.98
491 526 3.438087 CCAGTTTCACATCGCTTTGATCT 59.562 43.478 0.00 0.00 34.13 2.75
492 527 3.426695 CCCAGTTTCACATCGCTTTGATC 60.427 47.826 0.00 0.00 34.13 2.92
718 768 7.822658 AGTGTAAGCTTTCTCTCTGTTACTAG 58.177 38.462 3.20 0.00 0.00 2.57
725 783 4.167554 ACGAGTGTAAGCTTTCTCTCTG 57.832 45.455 23.83 20.11 0.00 3.35
764 822 3.869272 CAGAACATCTGCCGCGGC 61.869 66.667 42.35 42.35 37.72 6.53
798 867 6.545666 TGGTCAAAGCTCAGATTTCTTACAAA 59.454 34.615 0.00 0.00 0.00 2.83
850 920 9.918630 TTAGTTTAAACACTGGTAGTCAGATAC 57.081 33.333 20.06 0.00 46.18 2.24
910 980 0.539518 GTGAAGAGAGGAGGAAGGCC 59.460 60.000 0.00 0.00 0.00 5.19
930 1000 0.846427 AAGGGGTGATGGCAAGGAGA 60.846 55.000 0.00 0.00 0.00 3.71
959 1031 1.712018 GACGGCCGGTAAATCTTGGC 61.712 60.000 31.76 0.00 46.82 4.52
1024 1096 1.001641 AGATGACCAGGGCAACTGC 60.002 57.895 3.71 0.00 46.14 4.40
1077 1152 0.107508 AATGAGACTCACCATGGCGG 60.108 55.000 13.04 4.40 42.50 6.13
1083 1158 6.179906 AGAAGAGAAAAATGAGACTCACCA 57.820 37.500 7.47 0.00 32.59 4.17
1109 1184 7.026631 ACAAACTTGAGATGAACGATTCAAA 57.973 32.000 0.00 0.00 43.95 2.69
1110 1185 6.618287 ACAAACTTGAGATGAACGATTCAA 57.382 33.333 0.00 0.00 43.95 2.69
1111 1186 7.905604 ATACAAACTTGAGATGAACGATTCA 57.094 32.000 0.00 0.00 45.01 2.57
1112 1187 9.690434 GTAATACAAACTTGAGATGAACGATTC 57.310 33.333 0.00 0.00 0.00 2.52
1113 1188 9.436957 AGTAATACAAACTTGAGATGAACGATT 57.563 29.630 0.00 0.00 0.00 3.34
1114 1189 9.088512 GAGTAATACAAACTTGAGATGAACGAT 57.911 33.333 0.00 0.00 0.00 3.73
1115 1190 7.544566 GGAGTAATACAAACTTGAGATGAACGA 59.455 37.037 0.00 0.00 0.00 3.85
1116 1191 7.201530 GGGAGTAATACAAACTTGAGATGAACG 60.202 40.741 0.00 0.00 0.00 3.95
1117 1192 7.065923 GGGGAGTAATACAAACTTGAGATGAAC 59.934 40.741 0.00 0.00 0.00 3.18
1118 1193 7.110155 GGGGAGTAATACAAACTTGAGATGAA 58.890 38.462 0.00 0.00 0.00 2.57
1119 1194 6.629515 CGGGGAGTAATACAAACTTGAGATGA 60.630 42.308 0.00 0.00 0.00 2.92
1120 1195 5.523916 CGGGGAGTAATACAAACTTGAGATG 59.476 44.000 0.00 0.00 0.00 2.90
1121 1196 5.671493 CGGGGAGTAATACAAACTTGAGAT 58.329 41.667 0.00 0.00 0.00 2.75
1122 1197 4.622220 GCGGGGAGTAATACAAACTTGAGA 60.622 45.833 0.00 0.00 0.00 3.27
1123 1198 3.621715 GCGGGGAGTAATACAAACTTGAG 59.378 47.826 0.00 0.00 0.00 3.02
1124 1199 3.602483 GCGGGGAGTAATACAAACTTGA 58.398 45.455 0.00 0.00 0.00 3.02
1125 1200 2.681344 GGCGGGGAGTAATACAAACTTG 59.319 50.000 0.00 0.00 0.00 3.16
1126 1201 2.306512 TGGCGGGGAGTAATACAAACTT 59.693 45.455 0.00 0.00 0.00 2.66
1127 1202 1.910671 TGGCGGGGAGTAATACAAACT 59.089 47.619 0.00 0.00 0.00 2.66
1128 1203 2.406596 TGGCGGGGAGTAATACAAAC 57.593 50.000 0.00 0.00 0.00 2.93
1129 1204 2.572556 TCTTGGCGGGGAGTAATACAAA 59.427 45.455 0.00 0.00 0.00 2.83
1130 1205 2.189676 TCTTGGCGGGGAGTAATACAA 58.810 47.619 0.00 0.00 0.00 2.41
1131 1206 1.868713 TCTTGGCGGGGAGTAATACA 58.131 50.000 0.00 0.00 0.00 2.29
1132 1207 3.487120 AATCTTGGCGGGGAGTAATAC 57.513 47.619 0.00 0.00 0.00 1.89
1133 1208 3.181448 GGAAATCTTGGCGGGGAGTAATA 60.181 47.826 0.00 0.00 0.00 0.98
1134 1209 2.422945 GGAAATCTTGGCGGGGAGTAAT 60.423 50.000 0.00 0.00 0.00 1.89
1135 1210 1.064979 GGAAATCTTGGCGGGGAGTAA 60.065 52.381 0.00 0.00 0.00 2.24
1136 1211 0.544697 GGAAATCTTGGCGGGGAGTA 59.455 55.000 0.00 0.00 0.00 2.59
1137 1212 1.208165 AGGAAATCTTGGCGGGGAGT 61.208 55.000 0.00 0.00 0.00 3.85
1138 1213 0.034089 AAGGAAATCTTGGCGGGGAG 60.034 55.000 0.00 0.00 33.76 4.30
1139 1214 1.291109 TAAGGAAATCTTGGCGGGGA 58.709 50.000 0.00 0.00 36.93 4.81
1140 1215 2.364972 ATAAGGAAATCTTGGCGGGG 57.635 50.000 0.00 0.00 36.93 5.73
1141 1216 4.159506 TGAAAATAAGGAAATCTTGGCGGG 59.840 41.667 0.00 0.00 36.93 6.13
1142 1217 5.323371 TGAAAATAAGGAAATCTTGGCGG 57.677 39.130 0.00 0.00 36.93 6.13
1143 1218 9.533253 AATAATGAAAATAAGGAAATCTTGGCG 57.467 29.630 0.00 0.00 36.93 5.69
1167 1242 8.552296 AGGGAGTAATACAAACTTGAGATGAAT 58.448 33.333 0.00 0.00 0.00 2.57
1185 1260 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
1189 1264 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1190 1265 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1191 1266 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1192 1267 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1194 1269 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1195 1270 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1196 1271 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
1197 1272 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1198 1273 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
1199 1274 9.950680 AATGTCAAAAACGCTCTTATATTATGG 57.049 29.630 0.00 0.00 0.00 2.74
1202 1277 9.982291 GACAATGTCAAAAACGCTCTTATATTA 57.018 29.630 8.74 0.00 32.09 0.98
1203 1278 8.511321 TGACAATGTCAAAAACGCTCTTATATT 58.489 29.630 14.37 0.00 39.78 1.28
1204 1279 7.962918 GTGACAATGTCAAAAACGCTCTTATAT 59.037 33.333 18.48 0.00 44.49 0.86
1205 1280 7.041712 TGTGACAATGTCAAAAACGCTCTTATA 60.042 33.333 18.48 0.00 44.49 0.98
1206 1281 6.142817 GTGACAATGTCAAAAACGCTCTTAT 58.857 36.000 18.48 0.00 44.49 1.73
1207 1282 5.065346 TGTGACAATGTCAAAAACGCTCTTA 59.935 36.000 18.48 0.00 44.49 2.10
1208 1283 4.142491 TGTGACAATGTCAAAAACGCTCTT 60.142 37.500 18.48 0.00 44.49 2.85
1209 1284 3.376859 TGTGACAATGTCAAAAACGCTCT 59.623 39.130 18.48 0.00 44.49 4.09
1210 1285 3.690422 TGTGACAATGTCAAAAACGCTC 58.310 40.909 18.48 3.61 44.49 5.03
1211 1286 3.773860 TGTGACAATGTCAAAAACGCT 57.226 38.095 18.48 0.00 44.49 5.07
1212 1287 5.388225 AATTGTGACAATGTCAAAAACGC 57.612 34.783 21.28 7.65 42.14 4.84
1213 1288 7.678194 ACTAATTGTGACAATGTCAAAAACG 57.322 32.000 21.28 14.58 42.14 3.60
1214 1289 9.730420 ACTACTAATTGTGACAATGTCAAAAAC 57.270 29.630 21.28 8.69 42.14 2.43
1219 1294 9.719355 ACAATACTACTAATTGTGACAATGTCA 57.281 29.630 12.63 12.63 43.96 3.58
1233 1308 7.124298 AGCTGGTGAGATCAACAATACTACTAA 59.876 37.037 1.67 0.00 43.85 2.24
1291 1366 2.358125 CGGTTGGCATGGACGACA 60.358 61.111 0.00 0.00 0.00 4.35
1292 1367 3.124921 CCGGTTGGCATGGACGAC 61.125 66.667 0.00 0.00 0.00 4.34
1293 1368 3.632080 ACCGGTTGGCATGGACGA 61.632 61.111 0.00 0.00 39.70 4.20
1324 1399 5.393866 TCCCTTGCTGTAATCCTTTCTTTT 58.606 37.500 0.00 0.00 0.00 2.27
1394 1469 0.034380 TAGGTGTCTCCTCCACTCCG 60.034 60.000 0.00 0.00 44.42 4.63
1412 1487 2.356125 GCTTGGTTCAGCAGATCCCTTA 60.356 50.000 3.96 0.00 39.83 2.69
1482 1557 1.959226 GTTCTCCACGGCGAGCAAA 60.959 57.895 16.62 0.00 0.00 3.68
1704 1781 7.493367 ACTGCCACTACTCTAAATCAGATAAC 58.507 38.462 0.00 0.00 31.13 1.89
1726 1803 4.320788 GGGCACATGAAAGAAAGAGAACTG 60.321 45.833 0.00 0.00 0.00 3.16
1767 1851 4.566004 GTTTCCTAGCCAAAATTTCACCC 58.434 43.478 0.00 0.00 0.00 4.61
1800 1884 2.291190 GCTCAGTGGAGTAGTCGGATAC 59.709 54.545 0.00 0.00 43.37 2.24
1801 1885 2.092592 TGCTCAGTGGAGTAGTCGGATA 60.093 50.000 0.00 0.00 43.37 2.59
1802 1886 1.341089 TGCTCAGTGGAGTAGTCGGAT 60.341 52.381 0.00 0.00 43.37 4.18
1803 1887 0.037734 TGCTCAGTGGAGTAGTCGGA 59.962 55.000 0.00 0.00 43.37 4.55
1804 1888 1.107114 ATGCTCAGTGGAGTAGTCGG 58.893 55.000 0.00 0.00 43.37 4.79
1805 1889 2.946329 AGTATGCTCAGTGGAGTAGTCG 59.054 50.000 0.00 0.00 43.37 4.18
1806 1890 3.697045 ACAGTATGCTCAGTGGAGTAGTC 59.303 47.826 0.00 0.00 42.53 2.59
1807 1891 3.702792 ACAGTATGCTCAGTGGAGTAGT 58.297 45.455 0.00 0.00 42.53 2.73
1808 1892 4.884744 AGTACAGTATGCTCAGTGGAGTAG 59.115 45.833 0.00 0.00 42.53 2.57
1809 1893 4.856509 AGTACAGTATGCTCAGTGGAGTA 58.143 43.478 0.00 0.00 42.53 2.59
1810 1894 3.702792 AGTACAGTATGCTCAGTGGAGT 58.297 45.455 0.00 0.00 42.53 3.85
1882 1966 8.617290 TGACCCTTCAAAGTAGAAGAATAAAC 57.383 34.615 5.34 0.00 46.18 2.01
1911 1996 2.960384 TGGCTTAATGCATCCATTGAGG 59.040 45.455 0.00 0.00 42.30 3.86
1912 1997 4.659111 TTGGCTTAATGCATCCATTGAG 57.341 40.909 0.00 0.00 43.89 3.02
1913 1998 4.141892 CCTTTGGCTTAATGCATCCATTGA 60.142 41.667 0.00 0.00 45.15 2.57
1914 1999 4.124238 CCTTTGGCTTAATGCATCCATTG 58.876 43.478 0.00 0.00 45.15 2.82
1915 2000 4.032310 TCCTTTGGCTTAATGCATCCATT 58.968 39.130 0.00 0.00 45.15 3.16
1916 2001 3.645434 TCCTTTGGCTTAATGCATCCAT 58.355 40.909 0.00 0.00 45.15 3.41
1917 2002 3.098774 TCCTTTGGCTTAATGCATCCA 57.901 42.857 0.00 0.00 45.15 3.41
1969 2057 7.308589 CCATCCGATCTTGTGTTAAGAAAAACT 60.309 37.037 0.00 0.00 0.00 2.66
2076 2168 7.763356 TCGTGTGTTAAGATTTCCTTCAAAAA 58.237 30.769 0.00 0.00 36.34 1.94
2077 2169 7.066525 ACTCGTGTGTTAAGATTTCCTTCAAAA 59.933 33.333 0.00 0.00 36.34 2.44
2078 2170 6.540914 ACTCGTGTGTTAAGATTTCCTTCAAA 59.459 34.615 0.00 0.00 36.34 2.69
2079 2171 6.053005 ACTCGTGTGTTAAGATTTCCTTCAA 58.947 36.000 0.00 0.00 36.34 2.69
2080 2172 5.607477 ACTCGTGTGTTAAGATTTCCTTCA 58.393 37.500 0.00 0.00 36.34 3.02
2081 2173 6.541111 AACTCGTGTGTTAAGATTTCCTTC 57.459 37.500 0.00 0.00 36.34 3.46
2082 2174 5.176958 CGAACTCGTGTGTTAAGATTTCCTT 59.823 40.000 0.00 0.00 35.33 3.36
2083 2175 4.684703 CGAACTCGTGTGTTAAGATTTCCT 59.315 41.667 0.00 0.00 34.11 3.36
2084 2176 4.682860 TCGAACTCGTGTGTTAAGATTTCC 59.317 41.667 0.00 0.00 40.80 3.13
2085 2177 5.817616 TCGAACTCGTGTGTTAAGATTTC 57.182 39.130 0.00 0.00 40.80 2.17
2086 2178 6.036300 TGTTTCGAACTCGTGTGTTAAGATTT 59.964 34.615 0.00 0.00 40.80 2.17
2087 2179 5.521010 TGTTTCGAACTCGTGTGTTAAGATT 59.479 36.000 0.00 0.00 40.80 2.40
2088 2180 5.045215 TGTTTCGAACTCGTGTGTTAAGAT 58.955 37.500 0.00 0.00 40.80 2.40
2089 2181 4.422840 TGTTTCGAACTCGTGTGTTAAGA 58.577 39.130 0.00 0.00 40.80 2.10
2090 2182 4.765281 TGTTTCGAACTCGTGTGTTAAG 57.235 40.909 0.00 0.00 40.80 1.85
2091 2183 5.721876 ATTGTTTCGAACTCGTGTGTTAA 57.278 34.783 0.00 0.00 40.80 2.01
2092 2184 6.825284 TTATTGTTTCGAACTCGTGTGTTA 57.175 33.333 0.00 0.00 40.80 2.41
2093 2185 5.721876 TTATTGTTTCGAACTCGTGTGTT 57.278 34.783 0.00 0.00 40.80 3.32
2094 2186 5.721876 TTTATTGTTTCGAACTCGTGTGT 57.278 34.783 0.00 0.00 40.80 3.72
2095 2187 6.631238 ACATTTTATTGTTTCGAACTCGTGTG 59.369 34.615 0.00 0.00 40.80 3.82
2096 2188 6.721321 ACATTTTATTGTTTCGAACTCGTGT 58.279 32.000 0.00 0.00 40.80 4.49
2097 2189 7.149192 GGAACATTTTATTGTTTCGAACTCGTG 60.149 37.037 0.00 0.00 39.85 4.35
2098 2190 6.854381 GGAACATTTTATTGTTTCGAACTCGT 59.146 34.615 0.00 0.00 39.85 4.18
2099 2191 6.853872 TGGAACATTTTATTGTTTCGAACTCG 59.146 34.615 0.00 0.00 39.85 4.18
2153 2245 9.213799 ACATGTGTGTTAAAATTTTCTTTGTGT 57.786 25.926 6.72 1.76 34.01 3.72
2154 2246 9.475505 CACATGTGTGTTAAAATTTTCTTTGTG 57.524 29.630 18.03 7.67 40.96 3.33
2173 2265 4.206200 GGCGTTCTTTTTGTAACACATGTG 59.794 41.667 24.25 24.25 0.00 3.21
2174 2266 4.142359 TGGCGTTCTTTTTGTAACACATGT 60.142 37.500 0.00 0.00 0.00 3.21
2175 2267 4.355437 TGGCGTTCTTTTTGTAACACATG 58.645 39.130 0.00 0.00 0.00 3.21
2176 2268 4.640789 TGGCGTTCTTTTTGTAACACAT 57.359 36.364 0.00 0.00 0.00 3.21
2177 2269 4.436242 TTGGCGTTCTTTTTGTAACACA 57.564 36.364 0.00 0.00 0.00 3.72
2178 2270 7.631915 ATTATTGGCGTTCTTTTTGTAACAC 57.368 32.000 0.00 0.00 0.00 3.32
2179 2271 7.169982 CCAATTATTGGCGTTCTTTTTGTAACA 59.830 33.333 11.33 0.00 45.17 2.41
2180 2272 7.506474 CCAATTATTGGCGTTCTTTTTGTAAC 58.494 34.615 11.33 0.00 45.17 2.50
2181 2273 7.644986 CCAATTATTGGCGTTCTTTTTGTAA 57.355 32.000 11.33 0.00 45.17 2.41
2196 2288 2.958355 AGGGAACGATGGCCAATTATTG 59.042 45.455 10.96 0.00 0.00 1.90
2197 2289 3.312736 AGGGAACGATGGCCAATTATT 57.687 42.857 10.96 1.30 0.00 1.40
2198 2290 3.244911 CCTAGGGAACGATGGCCAATTAT 60.245 47.826 10.96 0.00 0.00 1.28
2199 2291 2.105821 CCTAGGGAACGATGGCCAATTA 59.894 50.000 10.96 0.00 0.00 1.40
2200 2292 1.133792 CCTAGGGAACGATGGCCAATT 60.134 52.381 10.96 4.41 0.00 2.32
2201 2293 0.474184 CCTAGGGAACGATGGCCAAT 59.526 55.000 10.96 0.00 0.00 3.16
2202 2294 1.632018 CCCTAGGGAACGATGGCCAA 61.632 60.000 24.99 0.00 37.50 4.52
2203 2295 2.070039 CCCTAGGGAACGATGGCCA 61.070 63.158 24.99 8.56 37.50 5.36
2204 2296 1.759459 CTCCCTAGGGAACGATGGCC 61.759 65.000 30.59 0.00 44.66 5.36
2205 2297 1.749033 CTCCCTAGGGAACGATGGC 59.251 63.158 30.59 0.00 44.66 4.40
2206 2298 0.760945 AGCTCCCTAGGGAACGATGG 60.761 60.000 30.59 18.74 44.66 3.51
2207 2299 0.390860 CAGCTCCCTAGGGAACGATG 59.609 60.000 30.59 23.77 44.66 3.84
2208 2300 1.403687 GCAGCTCCCTAGGGAACGAT 61.404 60.000 30.59 16.71 44.66 3.73
2209 2301 2.058595 GCAGCTCCCTAGGGAACGA 61.059 63.158 30.59 9.44 44.66 3.85
2210 2302 2.022240 GAGCAGCTCCCTAGGGAACG 62.022 65.000 30.59 20.91 44.66 3.95
2211 2303 1.691195 GGAGCAGCTCCCTAGGGAAC 61.691 65.000 30.59 26.19 44.36 3.62
2212 2304 1.383248 GGAGCAGCTCCCTAGGGAA 60.383 63.158 30.59 14.98 44.36 3.97
2213 2305 2.283809 GGAGCAGCTCCCTAGGGA 59.716 66.667 29.22 29.25 44.36 4.20
2220 2312 7.850819 GAAAATGTTCAATGGGAGCAGCTCC 62.851 48.000 31.13 31.13 40.25 4.70
2221 2313 1.760192 ATGTTCAATGGGAGCAGCTC 58.240 50.000 14.69 14.69 40.25 4.09
2222 2314 2.226962 AATGTTCAATGGGAGCAGCT 57.773 45.000 0.00 0.00 40.25 4.24
2223 2315 3.256558 GAAAATGTTCAATGGGAGCAGC 58.743 45.455 0.00 0.00 40.25 5.25
2224 2316 3.057315 ACGAAAATGTTCAATGGGAGCAG 60.057 43.478 0.00 0.00 40.25 4.24
2225 2317 2.890311 ACGAAAATGTTCAATGGGAGCA 59.110 40.909 0.00 0.00 41.21 4.26
2226 2318 3.575965 ACGAAAATGTTCAATGGGAGC 57.424 42.857 0.00 0.00 32.89 4.70
2227 2319 4.158384 CGAACGAAAATGTTCAATGGGAG 58.842 43.478 7.33 0.00 46.77 4.30
2228 2320 3.610585 GCGAACGAAAATGTTCAATGGGA 60.611 43.478 7.33 0.00 46.77 4.37
2229 2321 2.661195 GCGAACGAAAATGTTCAATGGG 59.339 45.455 7.33 0.00 46.77 4.00
2230 2322 2.661195 GGCGAACGAAAATGTTCAATGG 59.339 45.455 7.33 0.00 46.77 3.16
2231 2323 3.304257 TGGCGAACGAAAATGTTCAATG 58.696 40.909 7.33 0.00 46.77 2.82
2232 2324 3.634568 TGGCGAACGAAAATGTTCAAT 57.365 38.095 7.33 0.00 46.77 2.57
2233 2325 3.367607 CTTGGCGAACGAAAATGTTCAA 58.632 40.909 7.33 0.00 46.77 2.69
2234 2326 2.287308 CCTTGGCGAACGAAAATGTTCA 60.287 45.455 7.33 0.00 46.77 3.18
2235 2327 2.315901 CCTTGGCGAACGAAAATGTTC 58.684 47.619 0.00 0.00 43.76 3.18
2236 2328 1.000717 CCCTTGGCGAACGAAAATGTT 60.001 47.619 0.00 0.00 34.02 2.71
2237 2329 0.596082 CCCTTGGCGAACGAAAATGT 59.404 50.000 0.00 0.00 0.00 2.71
2238 2330 0.878416 TCCCTTGGCGAACGAAAATG 59.122 50.000 0.00 0.00 0.00 2.32
2239 2331 1.165270 CTCCCTTGGCGAACGAAAAT 58.835 50.000 0.00 0.00 0.00 1.82
2240 2332 1.512156 GCTCCCTTGGCGAACGAAAA 61.512 55.000 0.00 0.00 0.00 2.29
2241 2333 1.964373 GCTCCCTTGGCGAACGAAA 60.964 57.895 0.00 0.00 0.00 3.46
2242 2334 2.358247 GCTCCCTTGGCGAACGAA 60.358 61.111 0.00 0.00 0.00 3.85
2243 2335 3.589654 CTGCTCCCTTGGCGAACGA 62.590 63.158 0.00 0.00 0.00 3.85
2244 2336 3.121030 CTGCTCCCTTGGCGAACG 61.121 66.667 0.00 0.00 0.00 3.95
2245 2337 3.435186 GCTGCTCCCTTGGCGAAC 61.435 66.667 0.00 0.00 0.00 3.95
2246 2338 3.612247 GAGCTGCTCCCTTGGCGAA 62.612 63.158 18.80 0.00 0.00 4.70
2247 2339 4.087892 GAGCTGCTCCCTTGGCGA 62.088 66.667 18.80 0.00 0.00 5.54
2256 2348 2.178890 CATTCGCTGGGAGCTGCTC 61.179 63.158 21.17 21.17 39.60 4.26
2257 2349 1.980784 ATCATTCGCTGGGAGCTGCT 61.981 55.000 0.00 0.00 39.60 4.24
2258 2350 1.099879 AATCATTCGCTGGGAGCTGC 61.100 55.000 0.00 0.00 39.60 5.25
2259 2351 0.942962 GAATCATTCGCTGGGAGCTG 59.057 55.000 0.00 0.00 39.60 4.24
2260 2352 0.531532 CGAATCATTCGCTGGGAGCT 60.532 55.000 6.90 0.00 46.97 4.09
2261 2353 1.937391 CGAATCATTCGCTGGGAGC 59.063 57.895 6.90 0.00 46.97 4.70
2270 2362 1.587547 GAGGGCTGGTCGAATCATTC 58.412 55.000 0.00 0.00 0.00 2.67
2271 2363 0.179073 CGAGGGCTGGTCGAATCATT 60.179 55.000 0.00 0.00 39.92 2.57
2272 2364 1.043116 TCGAGGGCTGGTCGAATCAT 61.043 55.000 4.98 0.00 43.26 2.45
2273 2365 1.680989 TCGAGGGCTGGTCGAATCA 60.681 57.895 4.98 0.00 43.26 2.57
2274 2366 3.207354 TCGAGGGCTGGTCGAATC 58.793 61.111 4.98 0.00 43.26 2.52
2278 2370 0.598680 GATCAATCGAGGGCTGGTCG 60.599 60.000 0.00 0.00 38.84 4.79
2279 2371 3.297391 GATCAATCGAGGGCTGGTC 57.703 57.895 0.00 0.00 0.00 4.02
2290 2382 0.034616 CCTCCTCCTGGCGATCAATC 59.965 60.000 0.00 0.00 0.00 2.67
2291 2383 2.049627 GCCTCCTCCTGGCGATCAAT 62.050 60.000 0.00 0.00 41.03 2.57
2292 2384 2.735772 GCCTCCTCCTGGCGATCAA 61.736 63.158 0.00 0.00 41.03 2.57
2293 2385 3.157252 GCCTCCTCCTGGCGATCA 61.157 66.667 0.00 0.00 41.03 2.92
2310 2402 3.544503 ATGGGGGTTTGCCACAGGG 62.545 63.158 0.00 0.00 40.92 4.45
2311 2403 1.536174 AATGGGGGTTTGCCACAGG 60.536 57.895 0.00 0.00 40.92 4.00
2312 2404 1.672898 CAATGGGGGTTTGCCACAG 59.327 57.895 0.00 0.00 40.92 3.66
2313 2405 1.840650 CCAATGGGGGTTTGCCACA 60.841 57.895 0.00 0.00 40.92 4.17
2314 2406 3.067985 CCAATGGGGGTTTGCCAC 58.932 61.111 0.00 0.00 37.49 5.01
2332 2424 1.539157 AGCAAAACTGGGCTTCTAGC 58.461 50.000 0.00 0.00 36.92 3.42
2333 2425 3.944087 AGTAGCAAAACTGGGCTTCTAG 58.056 45.455 0.00 0.00 41.41 2.43
2334 2426 4.367039 AAGTAGCAAAACTGGGCTTCTA 57.633 40.909 0.00 0.00 41.41 2.10
2335 2427 2.959465 AGTAGCAAAACTGGGCTTCT 57.041 45.000 0.00 0.00 41.41 2.85
2336 2428 4.322080 AAAAGTAGCAAAACTGGGCTTC 57.678 40.909 0.00 0.00 41.41 3.86
2337 2429 5.862678 TTAAAAGTAGCAAAACTGGGCTT 57.137 34.783 0.00 0.00 41.41 4.35
2338 2430 5.862678 TTTAAAAGTAGCAAAACTGGGCT 57.137 34.783 0.00 0.00 43.94 5.19
2339 2431 6.145534 GTCATTTAAAAGTAGCAAAACTGGGC 59.854 38.462 0.00 0.00 0.00 5.36
2340 2432 7.206687 TGTCATTTAAAAGTAGCAAAACTGGG 58.793 34.615 0.00 0.00 0.00 4.45
2341 2433 8.702438 CATGTCATTTAAAAGTAGCAAAACTGG 58.298 33.333 0.00 0.00 0.00 4.00
2342 2434 9.462174 TCATGTCATTTAAAAGTAGCAAAACTG 57.538 29.630 0.00 0.00 0.00 3.16
2388 2480 9.814899 TGATTTCATGCTTTTCTCTGTTTTTAA 57.185 25.926 0.00 0.00 0.00 1.52
2389 2481 9.985730 ATGATTTCATGCTTTTCTCTGTTTTTA 57.014 25.926 0.00 0.00 34.83 1.52
2390 2482 8.770828 CATGATTTCATGCTTTTCTCTGTTTTT 58.229 29.630 7.56 0.00 45.92 1.94
2391 2483 8.306680 CATGATTTCATGCTTTTCTCTGTTTT 57.693 30.769 7.56 0.00 45.92 2.43
2392 2484 7.884816 CATGATTTCATGCTTTTCTCTGTTT 57.115 32.000 7.56 0.00 45.92 2.83
2405 2497 5.141202 ACGATGGCGCTCATGATTTCATG 62.141 47.826 14.84 13.25 46.88 3.07
2406 2498 1.534163 CGATGGCGCTCATGATTTCAT 59.466 47.619 14.84 3.10 35.97 2.57
2407 2499 0.939419 CGATGGCGCTCATGATTTCA 59.061 50.000 14.84 0.00 35.97 2.69
2408 2500 0.940126 ACGATGGCGCTCATGATTTC 59.060 50.000 14.84 2.15 42.48 2.17
2409 2501 2.238942 TACGATGGCGCTCATGATTT 57.761 45.000 14.84 1.34 42.48 2.17
2410 2502 2.071540 CATACGATGGCGCTCATGATT 58.928 47.619 14.84 3.36 42.48 2.57
2411 2503 1.673923 CCATACGATGGCGCTCATGAT 60.674 52.381 14.84 6.45 44.70 2.45
2412 2504 0.319813 CCATACGATGGCGCTCATGA 60.320 55.000 14.84 0.00 44.70 3.07
2413 2505 2.156542 CCATACGATGGCGCTCATG 58.843 57.895 14.84 10.09 44.70 3.07
2414 2506 4.681421 CCATACGATGGCGCTCAT 57.319 55.556 7.64 9.43 44.70 2.90
2429 2521 9.575868 TGGATGTTTTTGTATTAGTACTTTCCA 57.424 29.630 0.00 0.00 0.00 3.53
2432 2524 9.855021 GCATGGATGTTTTTGTATTAGTACTTT 57.145 29.630 0.00 0.00 0.00 2.66
2433 2525 9.243105 AGCATGGATGTTTTTGTATTAGTACTT 57.757 29.630 0.00 0.00 0.00 2.24
2434 2526 8.677300 CAGCATGGATGTTTTTGTATTAGTACT 58.323 33.333 0.00 0.00 0.00 2.73
2435 2527 8.458843 ACAGCATGGATGTTTTTGTATTAGTAC 58.541 33.333 0.00 0.00 43.62 2.73
2436 2528 8.458052 CACAGCATGGATGTTTTTGTATTAGTA 58.542 33.333 0.00 0.00 43.62 1.82
2437 2529 7.176515 TCACAGCATGGATGTTTTTGTATTAGT 59.823 33.333 0.00 0.00 43.62 2.24
2438 2530 7.537715 TCACAGCATGGATGTTTTTGTATTAG 58.462 34.615 0.00 0.00 43.62 1.73
2439 2531 7.459795 TCACAGCATGGATGTTTTTGTATTA 57.540 32.000 0.00 0.00 43.62 0.98
2440 2532 6.343716 TCACAGCATGGATGTTTTTGTATT 57.656 33.333 0.00 0.00 43.62 1.89
2441 2533 5.981088 TCACAGCATGGATGTTTTTGTAT 57.019 34.783 0.00 0.00 43.62 2.29
2442 2534 5.781210 TTCACAGCATGGATGTTTTTGTA 57.219 34.783 0.00 0.00 43.62 2.41
2443 2535 4.669206 TTCACAGCATGGATGTTTTTGT 57.331 36.364 0.00 0.00 43.62 2.83
2444 2536 5.987777 TTTTCACAGCATGGATGTTTTTG 57.012 34.783 0.00 0.00 43.62 2.44
2445 2537 8.674263 TTTATTTTCACAGCATGGATGTTTTT 57.326 26.923 0.00 0.00 43.62 1.94
2446 2538 8.674263 TTTTATTTTCACAGCATGGATGTTTT 57.326 26.923 0.00 0.00 43.62 2.43
2447 2539 8.674263 TTTTTATTTTCACAGCATGGATGTTT 57.326 26.923 0.00 0.00 43.62 2.83
2448 2540 8.851541 ATTTTTATTTTCACAGCATGGATGTT 57.148 26.923 0.00 0.00 43.62 2.71
2449 2541 9.941325 TTATTTTTATTTTCACAGCATGGATGT 57.059 25.926 0.00 0.00 43.62 3.06
2497 2589 1.688197 AGGACATGGCAACTTTTGTGG 59.312 47.619 0.00 0.00 37.61 4.17
2498 2590 4.582701 TTAGGACATGGCAACTTTTGTG 57.417 40.909 0.00 0.00 37.61 3.33
2499 2591 4.832266 TGATTAGGACATGGCAACTTTTGT 59.168 37.500 0.00 0.00 37.61 2.83
2500 2592 5.389859 TGATTAGGACATGGCAACTTTTG 57.610 39.130 0.00 0.00 37.61 2.44
2501 2593 5.304101 TGTTGATTAGGACATGGCAACTTTT 59.696 36.000 0.00 0.00 37.21 2.27
2502 2594 4.832266 TGTTGATTAGGACATGGCAACTTT 59.168 37.500 0.00 0.00 37.21 2.66
2503 2595 4.218417 GTGTTGATTAGGACATGGCAACTT 59.782 41.667 0.00 0.00 37.21 2.66
2504 2596 3.758554 GTGTTGATTAGGACATGGCAACT 59.241 43.478 0.00 0.00 37.21 3.16
2505 2597 3.119495 GGTGTTGATTAGGACATGGCAAC 60.119 47.826 0.00 0.00 36.92 4.17
2506 2598 3.088532 GGTGTTGATTAGGACATGGCAA 58.911 45.455 0.00 0.00 0.00 4.52
2507 2599 2.620367 GGGTGTTGATTAGGACATGGCA 60.620 50.000 0.00 0.00 0.00 4.92
2508 2600 2.024414 GGGTGTTGATTAGGACATGGC 58.976 52.381 0.00 0.00 0.00 4.40
2509 2601 3.364460 TGGGTGTTGATTAGGACATGG 57.636 47.619 0.00 0.00 0.00 3.66
2510 2602 5.720371 TTTTGGGTGTTGATTAGGACATG 57.280 39.130 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.