Multiple sequence alignment - TraesCS4A01G009600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G009600 chr4A 100.000 3356 0 0 1 3356 5744659 5741304 0.000000e+00 6198.0
1 TraesCS4A01G009600 chr4A 89.282 849 49 22 2533 3354 277927208 277928041 0.000000e+00 1026.0
2 TraesCS4A01G009600 chr4A 90.018 561 31 13 2816 3354 34576559 34576002 0.000000e+00 702.0
3 TraesCS4A01G009600 chr4A 84.513 226 23 7 2264 2487 5780942 5781157 2.620000e-51 213.0
4 TraesCS4A01G009600 chr4B 91.368 2178 131 32 391 2529 580769523 580771682 0.000000e+00 2928.0
5 TraesCS4A01G009600 chr4B 95.028 905 39 3 1006 1906 580614461 580613559 0.000000e+00 1417.0
6 TraesCS4A01G009600 chr4B 91.398 558 34 7 1990 2538 580613560 580613008 0.000000e+00 752.0
7 TraesCS4A01G009600 chr4B 97.297 37 1 0 2481 2517 580613125 580613089 2.800000e-06 63.9
8 TraesCS4A01G009600 chr4B 100.000 28 0 0 903 930 580614538 580614511 6.000000e-03 52.8
9 TraesCS4A01G009600 chr4D 94.270 1623 54 17 941 2529 464362688 464364305 0.000000e+00 2446.0
10 TraesCS4A01G009600 chr4D 96.080 1352 50 1 1031 2379 464301006 464299655 0.000000e+00 2200.0
11 TraesCS4A01G009600 chr4D 89.722 467 34 6 391 846 464362134 464362597 4.830000e-163 584.0
12 TraesCS4A01G009600 chr4D 89.595 173 15 1 2334 2503 464299608 464299436 2.030000e-52 217.0
13 TraesCS4A01G009600 chr4D 87.000 100 12 1 267 365 418851957 418852056 9.840000e-21 111.0
14 TraesCS4A01G009600 chr4D 87.013 77 10 0 623 699 464301558 464301482 1.660000e-13 87.9
15 TraesCS4A01G009600 chr5D 90.442 837 45 20 2539 3354 480745762 480746584 0.000000e+00 1070.0
16 TraesCS4A01G009600 chr5D 83.273 825 109 26 2542 3348 431882534 431881721 0.000000e+00 732.0
17 TraesCS4A01G009600 chr5D 88.000 100 11 1 267 365 500283998 500284097 2.120000e-22 117.0
18 TraesCS4A01G009600 chr5A 90.253 831 50 22 2539 3354 680508228 680507414 0.000000e+00 1057.0
19 TraesCS4A01G009600 chr1B 88.235 833 66 14 2542 3354 133331713 133332533 0.000000e+00 966.0
20 TraesCS4A01G009600 chr1B 88.128 219 25 1 2543 2760 130125798 130126016 3.320000e-65 259.0
21 TraesCS4A01G009600 chr2A 91.438 584 32 13 2784 3354 653882988 653882410 0.000000e+00 785.0
22 TraesCS4A01G009600 chr2A 94.030 268 12 3 1 267 65198754 65199018 1.450000e-108 403.0
23 TraesCS4A01G009600 chr2A 94.007 267 11 4 1 267 698105413 698105674 1.880000e-107 399.0
24 TraesCS4A01G009600 chr2A 93.657 268 12 4 1 267 33334253 33334516 2.430000e-106 396.0
25 TraesCS4A01G009600 chr2A 93.309 269 13 2 1 269 160012116 160011853 3.140000e-105 392.0
26 TraesCS4A01G009600 chr2A 88.158 228 25 2 2531 2757 653908811 653908585 1.530000e-68 270.0
27 TraesCS4A01G009600 chr7D 91.923 520 23 7 2842 3354 235697492 235696985 0.000000e+00 710.0
28 TraesCS4A01G009600 chr7D 81.991 844 99 28 2539 3354 179629361 179630179 0.000000e+00 667.0
29 TraesCS4A01G009600 chr7D 84.219 640 75 18 2542 3174 179632036 179631416 1.720000e-167 599.0
30 TraesCS4A01G009600 chr7D 100.000 29 0 0 472 500 462345775 462345747 2.000000e-03 54.7
31 TraesCS4A01G009600 chr3B 82.177 836 108 27 2548 3354 642313517 642312694 0.000000e+00 680.0
32 TraesCS4A01G009600 chr6B 90.800 500 30 9 2859 3354 408628530 408628043 0.000000e+00 654.0
33 TraesCS4A01G009600 chr6B 86.416 346 43 4 1203 1546 714580550 714580207 3.160000e-100 375.0
34 TraesCS4A01G009600 chr6B 85.135 222 33 0 1571 1792 6614124 6613903 9.370000e-56 228.0
35 TraesCS4A01G009600 chr6B 86.000 200 26 2 1184 1382 714582758 714582560 2.620000e-51 213.0
36 TraesCS4A01G009600 chr7B 85.811 592 56 18 2782 3354 656928109 656927527 1.330000e-168 603.0
37 TraesCS4A01G009600 chr7B 91.111 90 6 2 267 354 590152863 590152774 1.640000e-23 121.0
38 TraesCS4A01G009600 chr3A 79.833 838 99 44 2540 3354 35030109 35029319 6.330000e-152 547.0
39 TraesCS4A01G009600 chr3A 96.324 272 7 2 1 271 57968654 57968385 8.540000e-121 444.0
40 TraesCS4A01G009600 chr3A 94.444 270 12 3 1 269 538023282 538023549 2.410000e-111 412.0
41 TraesCS4A01G009600 chr3A 91.667 84 6 1 267 349 735376153 735376070 7.610000e-22 115.0
42 TraesCS4A01G009600 chr7A 95.539 269 6 2 1 269 55368495 55368757 3.090000e-115 425.0
43 TraesCS4A01G009600 chr7A 85.149 101 13 1 267 365 602027855 602027755 5.920000e-18 102.0
44 TraesCS4A01G009600 chr6A 95.131 267 11 1 1 267 428716818 428717082 1.440000e-113 420.0
45 TraesCS4A01G009600 chr6A 77.538 325 58 6 1564 1873 2155491 2155167 7.400000e-42 182.0
46 TraesCS4A01G009600 chr1A 94.382 267 13 2 1 267 396295782 396296046 3.120000e-110 409.0
47 TraesCS4A01G009600 chrUn 82.232 439 69 8 1121 1553 75203563 75203998 1.470000e-98 370.0
48 TraesCS4A01G009600 chr6D 82.448 433 67 8 1127 1553 468811803 468811374 1.470000e-98 370.0
49 TraesCS4A01G009600 chr6D 85.075 335 49 1 1564 1897 3348265 3347931 1.150000e-89 340.0
50 TraesCS4A01G009600 chr6D 92.000 50 3 1 1296 1345 3348383 3348335 6.010000e-08 69.4
51 TraesCS4A01G009600 chr2B 91.566 83 7 0 267 349 391452460 391452378 7.610000e-22 115.0
52 TraesCS4A01G009600 chr2B 90.110 91 6 2 267 354 582315132 582315042 7.610000e-22 115.0
53 TraesCS4A01G009600 chr2B 91.566 83 7 0 267 349 650478196 650478278 7.610000e-22 115.0
54 TraesCS4A01G009600 chr2B 87.778 90 9 2 267 354 798983408 798983497 1.650000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G009600 chr4A 5741304 5744659 3355 True 6198.000000 6198 100.00000 1 3356 1 chr4A.!!$R1 3355
1 TraesCS4A01G009600 chr4A 277927208 277928041 833 False 1026.000000 1026 89.28200 2533 3354 1 chr4A.!!$F2 821
2 TraesCS4A01G009600 chr4A 34576002 34576559 557 True 702.000000 702 90.01800 2816 3354 1 chr4A.!!$R2 538
3 TraesCS4A01G009600 chr4B 580769523 580771682 2159 False 2928.000000 2928 91.36800 391 2529 1 chr4B.!!$F1 2138
4 TraesCS4A01G009600 chr4B 580613008 580614538 1530 True 571.425000 1417 95.93075 903 2538 4 chr4B.!!$R1 1635
5 TraesCS4A01G009600 chr4D 464362134 464364305 2171 False 1515.000000 2446 91.99600 391 2529 2 chr4D.!!$F2 2138
6 TraesCS4A01G009600 chr4D 464299436 464301558 2122 True 834.966667 2200 90.89600 623 2503 3 chr4D.!!$R1 1880
7 TraesCS4A01G009600 chr5D 480745762 480746584 822 False 1070.000000 1070 90.44200 2539 3354 1 chr5D.!!$F1 815
8 TraesCS4A01G009600 chr5D 431881721 431882534 813 True 732.000000 732 83.27300 2542 3348 1 chr5D.!!$R1 806
9 TraesCS4A01G009600 chr5A 680507414 680508228 814 True 1057.000000 1057 90.25300 2539 3354 1 chr5A.!!$R1 815
10 TraesCS4A01G009600 chr1B 133331713 133332533 820 False 966.000000 966 88.23500 2542 3354 1 chr1B.!!$F2 812
11 TraesCS4A01G009600 chr2A 653882410 653882988 578 True 785.000000 785 91.43800 2784 3354 1 chr2A.!!$R2 570
12 TraesCS4A01G009600 chr7D 235696985 235697492 507 True 710.000000 710 91.92300 2842 3354 1 chr7D.!!$R2 512
13 TraesCS4A01G009600 chr7D 179629361 179630179 818 False 667.000000 667 81.99100 2539 3354 1 chr7D.!!$F1 815
14 TraesCS4A01G009600 chr7D 179631416 179632036 620 True 599.000000 599 84.21900 2542 3174 1 chr7D.!!$R1 632
15 TraesCS4A01G009600 chr3B 642312694 642313517 823 True 680.000000 680 82.17700 2548 3354 1 chr3B.!!$R1 806
16 TraesCS4A01G009600 chr6B 714580207 714582758 2551 True 294.000000 375 86.20800 1184 1546 2 chr6B.!!$R3 362
17 TraesCS4A01G009600 chr7B 656927527 656928109 582 True 603.000000 603 85.81100 2782 3354 1 chr7B.!!$R2 572
18 TraesCS4A01G009600 chr3A 35029319 35030109 790 True 547.000000 547 79.83300 2540 3354 1 chr3A.!!$R1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.036952 CAACAGATGAGCAGGACGGT 60.037 55.0 0.0 0.0 0.0 4.83 F
896 1083 0.110823 GCGCACGTCCTTTACAACTG 60.111 55.0 0.3 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 2315 2.347490 GAGTGGAAGAGGCCGCAA 59.653 61.111 9.88 0.0 40.91 4.85 R
2416 3523 0.036164 TACCACACCATCACACAGCC 59.964 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.609478 ACTGTTTGTTTGAGTTGTAATAAACG 57.391 30.769 0.00 0.00 37.84 3.60
27 28 8.452534 ACTGTTTGTTTGAGTTGTAATAAACGA 58.547 29.630 0.00 0.00 37.84 3.85
28 29 9.279904 CTGTTTGTTTGAGTTGTAATAAACGAA 57.720 29.630 0.00 0.00 37.84 3.85
29 30 9.622004 TGTTTGTTTGAGTTGTAATAAACGAAA 57.378 25.926 0.00 0.00 37.84 3.46
87 88 9.798994 TTTTTGCTTTTGTTTTTGAATGCATAT 57.201 22.222 0.00 0.00 36.32 1.78
88 89 8.783999 TTTGCTTTTGTTTTTGAATGCATATG 57.216 26.923 0.00 0.00 36.32 1.78
89 90 7.493743 TGCTTTTGTTTTTGAATGCATATGT 57.506 28.000 0.00 0.00 32.95 2.29
90 91 7.928103 TGCTTTTGTTTTTGAATGCATATGTT 58.072 26.923 0.00 0.00 32.95 2.71
91 92 7.856398 TGCTTTTGTTTTTGAATGCATATGTTG 59.144 29.630 0.00 0.00 32.95 3.33
92 93 7.856894 GCTTTTGTTTTTGAATGCATATGTTGT 59.143 29.630 0.00 0.00 0.00 3.32
93 94 9.719279 CTTTTGTTTTTGAATGCATATGTTGTT 57.281 25.926 0.00 0.00 0.00 2.83
95 96 9.499585 TTTGTTTTTGAATGCATATGTTGTTTG 57.500 25.926 0.00 0.00 0.00 2.93
96 97 8.206325 TGTTTTTGAATGCATATGTTGTTTGT 57.794 26.923 0.00 0.00 0.00 2.83
97 98 8.121086 TGTTTTTGAATGCATATGTTGTTTGTG 58.879 29.630 0.00 0.00 0.00 3.33
99 100 3.919197 TGAATGCATATGTTGTTTGTGCG 59.081 39.130 0.00 0.00 38.58 5.34
100 101 3.846423 ATGCATATGTTGTTTGTGCGA 57.154 38.095 0.00 0.00 38.58 5.10
102 103 2.551887 TGCATATGTTGTTTGTGCGAGT 59.448 40.909 4.29 0.00 38.58 4.18
103 104 3.163594 GCATATGTTGTTTGTGCGAGTC 58.836 45.455 4.29 0.00 0.00 3.36
104 105 3.407252 CATATGTTGTTTGTGCGAGTCG 58.593 45.455 8.54 8.54 0.00 4.18
121 122 4.473066 GCGCGCGCTGCATTTTTG 62.473 61.111 44.38 15.91 46.97 2.44
122 123 4.473066 CGCGCGCTGCATTTTTGC 62.473 61.111 30.48 6.56 46.97 3.68
127 128 2.647381 CGCTGCATTTTTGCGCGTT 61.647 52.632 20.48 0.00 45.17 4.84
128 129 1.154800 GCTGCATTTTTGCGCGTTG 60.155 52.632 8.43 0.00 37.69 4.10
129 130 1.154800 CTGCATTTTTGCGCGTTGC 60.155 52.632 8.43 7.88 46.70 4.17
130 131 1.550659 CTGCATTTTTGCGCGTTGCT 61.551 50.000 8.43 0.00 46.63 3.91
131 132 1.154800 GCATTTTTGCGCGTTGCTG 60.155 52.632 8.43 0.00 46.63 4.41
132 133 1.488093 CATTTTTGCGCGTTGCTGG 59.512 52.632 8.43 0.00 46.63 4.85
133 134 0.938637 CATTTTTGCGCGTTGCTGGA 60.939 50.000 8.43 0.00 46.63 3.86
134 135 0.664166 ATTTTTGCGCGTTGCTGGAG 60.664 50.000 8.43 0.00 46.63 3.86
135 136 3.822403 TTTTGCGCGTTGCTGGAGC 62.822 57.895 8.43 0.00 46.63 4.70
160 161 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
167 168 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
168 169 1.584483 CTGCATTTTAGCGCGGCTG 60.584 57.895 8.83 0.53 40.10 4.85
169 170 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
172 173 2.764314 ATTTTAGCGCGGCTGCTGG 61.764 57.895 22.96 1.40 46.70 4.85
173 174 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
174 175 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
206 207 3.118454 CGCGCCAAACCAGTCGAT 61.118 61.111 0.00 0.00 0.00 3.59
208 209 2.480555 CGCCAAACCAGTCGATGC 59.519 61.111 0.00 0.00 0.00 3.91
209 210 2.480555 GCCAAACCAGTCGATGCG 59.519 61.111 0.00 0.00 0.00 4.73
210 211 2.480555 CCAAACCAGTCGATGCGC 59.519 61.111 0.00 0.00 0.00 6.09
211 212 2.096406 CAAACCAGTCGATGCGCG 59.904 61.111 0.00 0.00 42.69 6.86
212 213 3.788766 AAACCAGTCGATGCGCGC 61.789 61.111 27.26 27.26 40.61 6.86
262 263 2.587194 CGGCGCCTCTTGGAGATG 60.587 66.667 26.68 0.00 34.95 2.90
263 264 2.899339 GGCGCCTCTTGGAGATGC 60.899 66.667 22.15 0.21 34.95 3.91
266 267 1.821936 CGCCTCTTGGAGATGCTCT 59.178 57.895 4.22 0.00 34.33 4.09
267 268 0.177604 CGCCTCTTGGAGATGCTCTT 59.822 55.000 4.22 0.00 34.33 2.85
268 269 1.410517 CGCCTCTTGGAGATGCTCTTA 59.589 52.381 4.22 0.00 34.33 2.10
270 271 2.433970 GCCTCTTGGAGATGCTCTTAGT 59.566 50.000 0.00 0.00 33.80 2.24
271 272 3.492482 GCCTCTTGGAGATGCTCTTAGTC 60.492 52.174 0.00 0.00 33.80 2.59
272 273 3.960102 CCTCTTGGAGATGCTCTTAGTCT 59.040 47.826 0.00 0.00 34.57 3.24
273 274 4.405358 CCTCTTGGAGATGCTCTTAGTCTT 59.595 45.833 0.00 0.00 34.57 3.01
275 276 5.019470 TCTTGGAGATGCTCTTAGTCTTCA 58.981 41.667 0.00 0.00 0.00 3.02
278 279 5.668471 TGGAGATGCTCTTAGTCTTCATTG 58.332 41.667 0.00 0.00 0.00 2.82
279 280 5.055812 GGAGATGCTCTTAGTCTTCATTGG 58.944 45.833 0.00 0.00 0.00 3.16
280 281 5.396213 GGAGATGCTCTTAGTCTTCATTGGT 60.396 44.000 0.00 0.00 0.00 3.67
281 282 5.669477 AGATGCTCTTAGTCTTCATTGGTC 58.331 41.667 0.00 0.00 0.00 4.02
282 283 4.890158 TGCTCTTAGTCTTCATTGGTCA 57.110 40.909 0.00 0.00 0.00 4.02
283 284 5.227569 TGCTCTTAGTCTTCATTGGTCAA 57.772 39.130 0.00 0.00 0.00 3.18
286 287 5.121454 GCTCTTAGTCTTCATTGGTCAACAG 59.879 44.000 0.00 0.00 0.00 3.16
287 288 6.419484 TCTTAGTCTTCATTGGTCAACAGA 57.581 37.500 0.00 0.00 0.00 3.41
288 289 7.009179 TCTTAGTCTTCATTGGTCAACAGAT 57.991 36.000 0.00 0.00 0.00 2.90
289 290 6.875726 TCTTAGTCTTCATTGGTCAACAGATG 59.124 38.462 0.00 0.00 0.00 2.90
290 291 5.233083 AGTCTTCATTGGTCAACAGATGA 57.767 39.130 0.00 0.00 35.05 2.92
291 292 5.243981 AGTCTTCATTGGTCAACAGATGAG 58.756 41.667 0.00 0.00 39.19 2.90
298 299 1.354040 GTCAACAGATGAGCAGGACG 58.646 55.000 0.00 0.00 39.19 4.79
300 301 0.036952 CAACAGATGAGCAGGACGGT 60.037 55.000 0.00 0.00 0.00 4.83
301 302 0.247736 AACAGATGAGCAGGACGGTC 59.752 55.000 0.00 0.00 42.75 4.79
302 303 0.613292 ACAGATGAGCAGGACGGTCT 60.613 55.000 8.23 0.00 42.88 3.85
303 304 1.341089 ACAGATGAGCAGGACGGTCTA 60.341 52.381 8.23 0.00 42.88 2.59
305 306 0.386113 GATGAGCAGGACGGTCTACC 59.614 60.000 8.23 0.00 42.88 3.18
306 307 1.043673 ATGAGCAGGACGGTCTACCC 61.044 60.000 8.23 0.00 42.88 3.69
308 309 3.468140 GCAGGACGGTCTACCCCC 61.468 72.222 8.23 0.00 0.00 5.40
338 339 1.839424 GGGGGAGAGGTTTGTGATTG 58.161 55.000 0.00 0.00 0.00 2.67
339 340 1.616994 GGGGGAGAGGTTTGTGATTGG 60.617 57.143 0.00 0.00 0.00 3.16
340 341 1.075536 GGGGAGAGGTTTGTGATTGGT 59.924 52.381 0.00 0.00 0.00 3.67
341 342 2.490902 GGGGAGAGGTTTGTGATTGGTT 60.491 50.000 0.00 0.00 0.00 3.67
342 343 2.558359 GGGAGAGGTTTGTGATTGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
343 344 3.222603 GGAGAGGTTTGTGATTGGTTGT 58.777 45.455 0.00 0.00 0.00 3.32
344 345 3.636764 GGAGAGGTTTGTGATTGGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
345 346 4.825085 GGAGAGGTTTGTGATTGGTTGTTA 59.175 41.667 0.00 0.00 0.00 2.41
346 347 5.048713 GGAGAGGTTTGTGATTGGTTGTTAG 60.049 44.000 0.00 0.00 0.00 2.34
347 348 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
348 349 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
349 350 7.458397 AGAGGTTTGTGATTGGTTGTTAGATA 58.542 34.615 0.00 0.00 0.00 1.98
350 351 7.942341 AGAGGTTTGTGATTGGTTGTTAGATAA 59.058 33.333 0.00 0.00 0.00 1.75
351 352 8.472007 AGGTTTGTGATTGGTTGTTAGATAAA 57.528 30.769 0.00 0.00 0.00 1.40
352 353 8.919145 AGGTTTGTGATTGGTTGTTAGATAAAA 58.081 29.630 0.00 0.00 0.00 1.52
353 354 9.535878 GGTTTGTGATTGGTTGTTAGATAAAAA 57.464 29.630 0.00 0.00 0.00 1.94
421 422 2.160822 ATCAATTGGGATCGAGCGAG 57.839 50.000 5.42 0.00 0.00 5.03
475 477 1.860326 CGTCGTACCCAAACGTTTTCT 59.140 47.619 11.66 0.00 43.31 2.52
479 481 4.730042 GTCGTACCCAAACGTTTTCTTTTC 59.270 41.667 11.66 0.28 43.31 2.29
537 540 8.814448 ATAGAGATTGGGTAGAAATAGGGAAA 57.186 34.615 0.00 0.00 0.00 3.13
538 541 7.525158 AGAGATTGGGTAGAAATAGGGAAAA 57.475 36.000 0.00 0.00 0.00 2.29
592 600 7.684062 ATTTTTCATCTTGCGTATGTAATGC 57.316 32.000 0.00 0.00 40.81 3.56
620 628 3.142174 GGCATGAGGGTAAATACTGCTC 58.858 50.000 0.00 0.00 0.00 4.26
625 633 3.785887 TGAGGGTAAATACTGCTCCCAAT 59.214 43.478 0.00 0.00 40.48 3.16
631 639 2.634815 ATACTGCTCCCAATGCTGAG 57.365 50.000 0.00 0.00 34.27 3.35
677 685 1.783140 GAAACGGACGCATCGTATACC 59.217 52.381 0.00 0.00 41.37 2.73
690 698 1.478137 GTATACCGTCTGCTTCTGCG 58.522 55.000 0.00 0.00 43.34 5.18
737 875 2.177977 GTCAGACATAGCTCGTGAACG 58.822 52.381 6.07 0.00 41.45 3.95
784 949 4.742201 CCAGACACGGCACCGGAG 62.742 72.222 9.46 0.00 44.69 4.63
800 965 1.732732 CGGAGAGCTAACTTGGACACG 60.733 57.143 0.00 0.00 0.00 4.49
834 1002 1.669115 CAGGACGACAACAGCAGGG 60.669 63.158 0.00 0.00 0.00 4.45
835 1003 3.050275 GGACGACAACAGCAGGGC 61.050 66.667 0.00 0.00 0.00 5.19
836 1004 2.280797 GACGACAACAGCAGGGCA 60.281 61.111 0.00 0.00 0.00 5.36
837 1005 1.672356 GACGACAACAGCAGGGCAT 60.672 57.895 0.00 0.00 0.00 4.40
838 1006 1.639298 GACGACAACAGCAGGGCATC 61.639 60.000 0.00 0.00 0.00 3.91
839 1007 1.672030 CGACAACAGCAGGGCATCA 60.672 57.895 0.00 0.00 0.00 3.07
842 1010 0.892358 ACAACAGCAGGGCATCACAG 60.892 55.000 0.00 0.00 0.00 3.66
871 1058 1.435925 CTAGCGGTACCGTGCATGA 59.564 57.895 33.34 12.79 42.09 3.07
872 1059 0.595053 CTAGCGGTACCGTGCATGAG 60.595 60.000 33.34 17.68 42.09 2.90
893 1080 3.236322 CGCGCACGTCCTTTACAA 58.764 55.556 8.75 0.00 33.53 2.41
894 1081 1.154727 CGCGCACGTCCTTTACAAC 60.155 57.895 8.75 0.00 33.53 3.32
896 1083 0.110823 GCGCACGTCCTTTACAACTG 60.111 55.000 0.30 0.00 0.00 3.16
898 1085 0.941542 GCACGTCCTTTACAACTGCA 59.058 50.000 0.00 0.00 0.00 4.41
899 1086 1.535462 GCACGTCCTTTACAACTGCAT 59.465 47.619 0.00 0.00 0.00 3.96
900 1087 2.031157 GCACGTCCTTTACAACTGCATT 60.031 45.455 0.00 0.00 0.00 3.56
924 1149 3.478857 ACCAACATTTCACTCACGGTA 57.521 42.857 0.00 0.00 0.00 4.02
927 1152 5.553123 ACCAACATTTCACTCACGGTAATA 58.447 37.500 0.00 0.00 0.00 0.98
928 1153 5.410439 ACCAACATTTCACTCACGGTAATAC 59.590 40.000 0.00 0.00 0.00 1.89
929 1154 5.642063 CCAACATTTCACTCACGGTAATACT 59.358 40.000 0.00 0.00 0.00 2.12
930 1155 6.183360 CCAACATTTCACTCACGGTAATACTC 60.183 42.308 0.00 0.00 0.00 2.59
931 1156 6.032956 ACATTTCACTCACGGTAATACTCA 57.967 37.500 0.00 0.00 0.00 3.41
932 1157 6.460781 ACATTTCACTCACGGTAATACTCAA 58.539 36.000 0.00 0.00 0.00 3.02
990 1215 1.372499 GTACTCCAGACGCACGCAA 60.372 57.895 0.00 0.00 0.00 4.85
1021 1246 0.173255 GAGCAGGAGTGAGAGTGAGC 59.827 60.000 0.00 0.00 0.00 4.26
1036 1261 0.879839 TGAGCCACACATCACACACG 60.880 55.000 0.00 0.00 0.00 4.49
1438 2445 1.293963 GCTCGTGCACATCTTCTGCA 61.294 55.000 18.64 0.00 42.42 4.41
1748 2755 1.347707 CTACCAGGACAAGCTGTTCCA 59.652 52.381 14.78 0.00 0.00 3.53
2139 3152 2.436292 CTGGCTCAGGTGCTGCTC 60.436 66.667 0.00 0.00 0.00 4.26
2350 3363 1.781555 GTCAAGCACATCCACGACG 59.218 57.895 0.00 0.00 0.00 5.12
2381 3409 3.182572 CCGTCATTTATAACTCGCTCAGC 59.817 47.826 0.00 0.00 0.00 4.26
2416 3523 0.368227 GCGCGAGTCTGTCTTCATTG 59.632 55.000 12.10 0.00 0.00 2.82
2437 3548 2.436417 GCTGTGTGATGGTGTGGTATT 58.564 47.619 0.00 0.00 0.00 1.89
2471 3589 4.261572 GCCTATGTTTGTGTCATTGTGTGT 60.262 41.667 0.00 0.00 0.00 3.72
2519 3639 4.694982 TGTGTATGTGACCTATGTTTGCTG 59.305 41.667 0.00 0.00 0.00 4.41
2535 3655 5.167845 GTTTGCTGGTATGGTTGGTTAATG 58.832 41.667 0.00 0.00 0.00 1.90
2582 3702 0.382515 GCTATCGCTTCTGGTCGTCT 59.617 55.000 0.00 0.00 0.00 4.18
2638 3758 0.896019 CCACCAATGCCACCGGTAAA 60.896 55.000 6.87 0.00 0.00 2.01
2662 3782 8.885494 AATGGAAAAATGATTCAACTTTTCGA 57.115 26.923 20.15 18.52 38.22 3.71
2732 3855 1.392853 GTCACTGAATGAAGAGCAGCG 59.607 52.381 0.00 0.00 39.72 5.18
2753 3876 3.781307 CGGTCGGCCAATCCCTCA 61.781 66.667 6.96 0.00 34.09 3.86
2755 3878 1.526917 GGTCGGCCAATCCCTCATG 60.527 63.158 0.00 0.00 34.09 3.07
2777 3901 0.739561 GCGATGAGACCTAGGTTCGT 59.260 55.000 26.47 20.66 30.29 3.85
2805 3944 4.468095 TTAGCTTTCTTTTCTCACGCAC 57.532 40.909 0.00 0.00 0.00 5.34
2831 3971 3.904800 ACCCATGTATGTGTTCATCGA 57.095 42.857 0.00 0.00 35.70 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.622004 TTTCGTTTATTACAACTCAAACAAACA 57.378 25.926 0.00 0.00 31.80 2.83
62 63 9.234384 CATATGCATTCAAAAACAAAAGCAAAA 57.766 25.926 3.54 0.00 34.15 2.44
63 64 8.404000 ACATATGCATTCAAAAACAAAAGCAAA 58.596 25.926 3.54 0.00 34.15 3.68
64 65 7.928103 ACATATGCATTCAAAAACAAAAGCAA 58.072 26.923 3.54 0.00 34.15 3.91
66 67 7.856894 ACAACATATGCATTCAAAAACAAAAGC 59.143 29.630 3.54 0.00 0.00 3.51
67 68 9.719279 AACAACATATGCATTCAAAAACAAAAG 57.281 25.926 3.54 0.00 0.00 2.27
69 70 9.499585 CAAACAACATATGCATTCAAAAACAAA 57.500 25.926 3.54 0.00 0.00 2.83
71 72 8.121086 CACAAACAACATATGCATTCAAAAACA 58.879 29.630 3.54 0.00 0.00 2.83
72 73 7.111870 GCACAAACAACATATGCATTCAAAAAC 59.888 33.333 3.54 0.00 36.30 2.43
74 75 6.563567 CGCACAAACAACATATGCATTCAAAA 60.564 34.615 3.54 0.00 36.02 2.44
75 76 5.107568 CGCACAAACAACATATGCATTCAAA 60.108 36.000 3.54 0.00 36.02 2.69
76 77 4.385146 CGCACAAACAACATATGCATTCAA 59.615 37.500 3.54 0.00 36.02 2.69
77 78 3.919197 CGCACAAACAACATATGCATTCA 59.081 39.130 3.54 0.00 36.02 2.57
79 80 4.168014 CTCGCACAAACAACATATGCATT 58.832 39.130 3.54 0.00 36.02 3.56
80 81 3.191162 ACTCGCACAAACAACATATGCAT 59.809 39.130 3.79 3.79 36.02 3.96
82 83 3.163594 GACTCGCACAAACAACATATGC 58.836 45.455 1.58 0.00 0.00 3.14
84 85 3.722555 CGACTCGCACAAACAACATAT 57.277 42.857 0.00 0.00 0.00 1.78
104 105 4.473066 CAAAAATGCAGCGCGCGC 62.473 61.111 45.10 45.10 46.97 6.86
105 106 4.473066 GCAAAAATGCAGCGCGCG 62.473 61.111 28.44 28.44 46.97 6.86
106 107 4.473066 CGCAAAAATGCAGCGCGC 62.473 61.111 26.66 26.66 45.14 6.86
110 111 1.154800 CAACGCGCAAAAATGCAGC 60.155 52.632 5.73 4.89 34.41 5.25
111 112 1.154800 GCAACGCGCAAAAATGCAG 60.155 52.632 5.73 0.00 41.79 4.41
112 113 1.591059 AGCAACGCGCAAAAATGCA 60.591 47.368 5.73 0.00 46.13 3.96
113 114 1.154800 CAGCAACGCGCAAAAATGC 60.155 52.632 5.73 9.95 46.13 3.56
114 115 0.938637 TCCAGCAACGCGCAAAAATG 60.939 50.000 5.73 0.00 46.13 2.32
115 116 0.664166 CTCCAGCAACGCGCAAAAAT 60.664 50.000 5.73 0.00 46.13 1.82
116 117 1.299014 CTCCAGCAACGCGCAAAAA 60.299 52.632 5.73 0.00 46.13 1.94
117 118 2.331098 CTCCAGCAACGCGCAAAA 59.669 55.556 5.73 0.00 46.13 2.44
143 144 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
144 145 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
149 150 2.951227 GCCGCGCTAAAATGCAGC 60.951 61.111 5.56 0.00 35.61 5.25
150 151 1.584483 CAGCCGCGCTAAAATGCAG 60.584 57.895 5.56 0.00 36.40 4.41
151 152 2.484662 CAGCCGCGCTAAAATGCA 59.515 55.556 5.56 0.00 36.40 3.96
152 153 2.951227 GCAGCCGCGCTAAAATGC 60.951 61.111 5.56 4.97 36.40 3.56
153 154 1.584483 CAGCAGCCGCGCTAAAATG 60.584 57.895 5.56 0.00 45.49 2.32
155 156 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
157 158 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
189 190 3.118454 ATCGACTGGTTTGGCGCG 61.118 61.111 0.00 0.00 0.00 6.86
190 191 2.480555 CATCGACTGGTTTGGCGC 59.519 61.111 0.00 0.00 0.00 6.53
193 194 2.480555 GCGCATCGACTGGTTTGG 59.519 61.111 0.30 0.00 0.00 3.28
195 196 3.788766 GCGCGCATCGACTGGTTT 61.789 61.111 29.10 0.00 41.67 3.27
210 211 3.638867 AAAACACGTATGCCGCGCG 62.639 57.895 25.67 25.67 41.42 6.86
211 212 1.441349 AAAAACACGTATGCCGCGC 60.441 52.632 0.00 0.00 41.42 6.86
212 213 4.830708 AAAAACACGTATGCCGCG 57.169 50.000 0.00 0.00 41.42 6.46
245 246 2.587194 CATCTCCAAGAGGCGCCG 60.587 66.667 23.20 6.32 33.74 6.46
246 247 2.899339 GCATCTCCAAGAGGCGCC 60.899 66.667 21.89 21.89 42.34 6.53
260 261 5.426689 TGACCAATGAAGACTAAGAGCAT 57.573 39.130 0.00 0.00 0.00 3.79
262 263 4.997395 TGTTGACCAATGAAGACTAAGAGC 59.003 41.667 0.00 0.00 0.00 4.09
263 264 6.459066 TCTGTTGACCAATGAAGACTAAGAG 58.541 40.000 0.00 0.00 0.00 2.85
266 267 6.768483 TCATCTGTTGACCAATGAAGACTAA 58.232 36.000 0.00 0.00 0.00 2.24
267 268 6.358974 TCATCTGTTGACCAATGAAGACTA 57.641 37.500 0.00 0.00 0.00 2.59
268 269 5.233083 TCATCTGTTGACCAATGAAGACT 57.767 39.130 0.00 0.00 0.00 3.24
270 271 4.005650 GCTCATCTGTTGACCAATGAAGA 58.994 43.478 0.00 0.00 0.00 2.87
271 272 3.754850 TGCTCATCTGTTGACCAATGAAG 59.245 43.478 0.00 0.00 0.00 3.02
272 273 3.753815 TGCTCATCTGTTGACCAATGAA 58.246 40.909 0.00 0.00 0.00 2.57
273 274 3.340928 CTGCTCATCTGTTGACCAATGA 58.659 45.455 0.00 0.00 0.00 2.57
275 276 2.306805 TCCTGCTCATCTGTTGACCAAT 59.693 45.455 0.00 0.00 0.00 3.16
278 279 1.731720 GTCCTGCTCATCTGTTGACC 58.268 55.000 0.00 0.00 0.00 4.02
279 280 1.354040 CGTCCTGCTCATCTGTTGAC 58.646 55.000 0.00 0.00 0.00 3.18
280 281 0.247460 CCGTCCTGCTCATCTGTTGA 59.753 55.000 0.00 0.00 0.00 3.18
281 282 0.036952 ACCGTCCTGCTCATCTGTTG 60.037 55.000 0.00 0.00 0.00 3.33
282 283 0.247736 GACCGTCCTGCTCATCTGTT 59.752 55.000 0.00 0.00 0.00 3.16
283 284 0.613292 AGACCGTCCTGCTCATCTGT 60.613 55.000 0.00 0.00 0.00 3.41
286 287 0.386113 GGTAGACCGTCCTGCTCATC 59.614 60.000 0.00 0.00 0.00 2.92
287 288 1.043673 GGGTAGACCGTCCTGCTCAT 61.044 60.000 0.00 0.00 36.71 2.90
288 289 1.681327 GGGTAGACCGTCCTGCTCA 60.681 63.158 0.00 0.00 36.71 4.26
289 290 2.424733 GGGGTAGACCGTCCTGCTC 61.425 68.421 0.00 0.00 41.60 4.26
290 291 2.363925 GGGGTAGACCGTCCTGCT 60.364 66.667 0.00 0.00 41.60 4.24
291 292 3.468140 GGGGGTAGACCGTCCTGC 61.468 72.222 0.00 0.00 41.60 4.85
319 320 1.616994 CCAATCACAAACCTCTCCCCC 60.617 57.143 0.00 0.00 0.00 5.40
320 321 1.075536 ACCAATCACAAACCTCTCCCC 59.924 52.381 0.00 0.00 0.00 4.81
323 324 4.918810 AACAACCAATCACAAACCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
324 325 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
325 326 6.575162 ATCTAACAACCAATCACAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85
326 327 8.472007 TTTATCTAACAACCAATCACAAACCT 57.528 30.769 0.00 0.00 0.00 3.50
327 328 9.535878 TTTTTATCTAACAACCAATCACAAACC 57.464 29.630 0.00 0.00 0.00 3.27
367 368 9.469807 CCACAAAAGTGCTAATAAACATACAAA 57.530 29.630 0.00 0.00 0.00 2.83
368 369 8.851145 TCCACAAAAGTGCTAATAAACATACAA 58.149 29.630 0.00 0.00 0.00 2.41
369 370 8.293867 GTCCACAAAAGTGCTAATAAACATACA 58.706 33.333 0.00 0.00 0.00 2.29
370 371 7.753580 GGTCCACAAAAGTGCTAATAAACATAC 59.246 37.037 0.00 0.00 0.00 2.39
371 372 7.361371 CGGTCCACAAAAGTGCTAATAAACATA 60.361 37.037 0.00 0.00 0.00 2.29
373 374 5.278071 CGGTCCACAAAAGTGCTAATAAACA 60.278 40.000 0.00 0.00 0.00 2.83
374 375 5.151389 CGGTCCACAAAAGTGCTAATAAAC 58.849 41.667 0.00 0.00 0.00 2.01
375 376 4.320641 GCGGTCCACAAAAGTGCTAATAAA 60.321 41.667 0.00 0.00 0.00 1.40
376 377 3.189702 GCGGTCCACAAAAGTGCTAATAA 59.810 43.478 0.00 0.00 0.00 1.40
378 379 1.539827 GCGGTCCACAAAAGTGCTAAT 59.460 47.619 0.00 0.00 0.00 1.73
379 380 0.948678 GCGGTCCACAAAAGTGCTAA 59.051 50.000 0.00 0.00 0.00 3.09
380 381 0.887387 GGCGGTCCACAAAAGTGCTA 60.887 55.000 0.00 0.00 0.00 3.49
381 382 2.193536 GGCGGTCCACAAAAGTGCT 61.194 57.895 0.00 0.00 0.00 4.40
382 383 1.805428 ATGGCGGTCCACAAAAGTGC 61.805 55.000 0.00 0.00 46.92 4.40
384 385 2.290641 TGATATGGCGGTCCACAAAAGT 60.291 45.455 0.00 0.00 46.92 2.66
386 387 2.498644 TGATATGGCGGTCCACAAAA 57.501 45.000 0.00 0.00 46.92 2.44
387 388 2.498644 TTGATATGGCGGTCCACAAA 57.501 45.000 0.00 0.00 46.92 2.83
388 389 2.687425 CAATTGATATGGCGGTCCACAA 59.313 45.455 0.00 0.00 46.92 3.33
389 390 2.296792 CAATTGATATGGCGGTCCACA 58.703 47.619 0.00 0.00 46.92 4.17
401 402 2.029020 CCTCGCTCGATCCCAATTGATA 60.029 50.000 7.12 0.00 0.00 2.15
405 406 1.227674 GCCTCGCTCGATCCCAATT 60.228 57.895 0.00 0.00 0.00 2.32
446 447 4.487412 GGTACGACGGTCCGGCAG 62.487 72.222 19.34 12.59 32.52 4.85
479 481 9.936759 TTCAATATAAAAGGCAGGGTTAAAAAG 57.063 29.630 0.00 0.00 0.00 2.27
537 540 5.011090 TCACTCAGAGCAACGCTATTATT 57.989 39.130 0.00 0.00 39.88 1.40
538 541 4.615949 CTCACTCAGAGCAACGCTATTAT 58.384 43.478 0.00 0.00 39.88 1.28
592 600 2.127271 TTACCCTCATGCCATGTGTG 57.873 50.000 4.31 0.00 0.00 3.82
631 639 5.107875 GGTGACATCGATTTTTGTTGCTTTC 60.108 40.000 0.00 0.00 0.00 2.62
677 685 1.665544 CGTACACGCAGAAGCAGACG 61.666 60.000 0.00 0.00 42.27 4.18
690 698 2.434761 CGATGAACCGACTACGTACAC 58.565 52.381 0.00 0.00 37.88 2.90
780 945 1.732732 CGTGTCCAAGTTAGCTCTCCG 60.733 57.143 0.00 0.00 0.00 4.63
784 949 2.067013 GGAACGTGTCCAAGTTAGCTC 58.933 52.381 10.67 0.00 46.97 4.09
800 965 2.223377 GTCCTGTGAACGTTGATGGAAC 59.777 50.000 5.00 1.77 0.00 3.62
834 1002 1.099879 GGATGGTCAGGCTGTGATGC 61.100 60.000 15.27 6.65 37.56 3.91
835 1003 0.545171 AGGATGGTCAGGCTGTGATG 59.455 55.000 15.27 0.00 37.56 3.07
836 1004 2.045524 CTAGGATGGTCAGGCTGTGAT 58.954 52.381 15.27 4.93 37.56 3.06
837 1005 1.489481 CTAGGATGGTCAGGCTGTGA 58.511 55.000 15.27 0.00 0.00 3.58
838 1006 0.179062 GCTAGGATGGTCAGGCTGTG 60.179 60.000 15.27 0.00 0.00 3.66
839 1007 1.680522 CGCTAGGATGGTCAGGCTGT 61.681 60.000 15.27 0.00 0.00 4.40
842 1010 1.113517 TACCGCTAGGATGGTCAGGC 61.114 60.000 0.00 0.00 41.02 4.85
891 1078 5.752472 TGAAATGTTGGTTGTAATGCAGTTG 59.248 36.000 0.00 0.00 0.00 3.16
893 1080 5.068987 AGTGAAATGTTGGTTGTAATGCAGT 59.931 36.000 0.00 0.00 0.00 4.40
894 1081 5.531634 AGTGAAATGTTGGTTGTAATGCAG 58.468 37.500 0.00 0.00 0.00 4.41
896 1083 5.402270 GTGAGTGAAATGTTGGTTGTAATGC 59.598 40.000 0.00 0.00 0.00 3.56
898 1085 5.278266 CCGTGAGTGAAATGTTGGTTGTAAT 60.278 40.000 0.00 0.00 0.00 1.89
899 1086 4.035792 CCGTGAGTGAAATGTTGGTTGTAA 59.964 41.667 0.00 0.00 0.00 2.41
900 1087 3.562141 CCGTGAGTGAAATGTTGGTTGTA 59.438 43.478 0.00 0.00 0.00 2.41
975 1200 2.243957 TGTTTGCGTGCGTCTGGAG 61.244 57.895 0.00 0.00 0.00 3.86
990 1215 0.473755 TCCTGCTCATGTGGTGTGTT 59.526 50.000 0.00 0.00 0.00 3.32
1021 1246 0.790207 GTAGCGTGTGTGATGTGTGG 59.210 55.000 0.00 0.00 0.00 4.17
1036 1261 4.603946 GATCCCGGCCGGTGTAGC 62.604 72.222 40.52 25.08 0.00 3.58
1086 1315 3.375239 TCGTTCGTCGATGGGCCA 61.375 61.111 9.61 9.61 44.01 5.36
1308 2315 2.347490 GAGTGGAAGAGGCCGCAA 59.653 61.111 9.88 0.00 40.91 4.85
1556 2563 4.101448 CCTTGTCCTCCGGCCTGG 62.101 72.222 0.00 3.90 40.09 4.45
1828 2835 2.821366 CCTGGACATGGCGCTCAC 60.821 66.667 7.64 0.00 0.00 3.51
2139 3152 4.760047 CACCTCCCTCCGCCGTTG 62.760 72.222 0.00 0.00 0.00 4.10
2350 3363 5.290386 AGTTATAAATGACGGCAGCTAGTC 58.710 41.667 0.00 12.65 37.85 2.59
2405 3433 2.497138 TCACACAGCCAATGAAGACAG 58.503 47.619 0.00 0.00 0.00 3.51
2416 3523 0.036164 TACCACACCATCACACAGCC 59.964 55.000 0.00 0.00 0.00 4.85
2437 3548 4.699735 CACAAACATAGGCCACATACTCAA 59.300 41.667 5.01 0.00 0.00 3.02
2471 3589 2.290008 ACCACACCATCACGCTAATGAA 60.290 45.455 0.00 0.00 30.82 2.57
2638 3758 8.764287 GTTCGAAAAGTTGAATCATTTTTCCAT 58.236 29.630 18.95 0.00 36.61 3.41
2662 3782 1.886542 GAAGGAGGCGGTGATTTTGTT 59.113 47.619 0.00 0.00 0.00 2.83
2753 3876 3.231207 ACCTAGGTCTCATCGCTACAT 57.769 47.619 9.21 0.00 0.00 2.29
2755 3878 2.031857 CGAACCTAGGTCTCATCGCTAC 60.032 54.545 16.64 0.00 0.00 3.58
2770 3893 5.131067 AGAAAGCTAAAAAGGAACGAACCT 58.869 37.500 0.00 0.00 42.69 3.50
2777 3901 7.193595 CGTGAGAAAAGAAAGCTAAAAAGGAA 58.806 34.615 0.00 0.00 0.00 3.36
2805 3944 2.572191 ACACATACATGGGTACGACG 57.428 50.000 0.00 0.00 43.89 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.