Multiple sequence alignment - TraesCS4A01G009100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G009100 chr4A 100.000 3278 0 0 1 3278 5523346 5526623 0.000000e+00 6054.0
1 TraesCS4A01G009100 chr4A 94.514 802 39 4 1 798 743161133 743160333 0.000000e+00 1232.0
2 TraesCS4A01G009100 chr4B 94.125 800 45 2 1 798 639001252 639000453 0.000000e+00 1216.0
3 TraesCS4A01G009100 chr4B 81.050 1409 213 37 1122 2501 625979885 625981268 0.000000e+00 1074.0
4 TraesCS4A01G009100 chr4B 86.842 760 45 20 2554 3278 581163080 581162341 0.000000e+00 798.0
5 TraesCS4A01G009100 chr4B 82.022 267 39 6 2106 2368 665969031 665968770 5.510000e-53 219.0
6 TraesCS4A01G009100 chr3B 92.653 803 39 8 1 798 665471464 665470677 0.000000e+00 1138.0
7 TraesCS4A01G009100 chr5B 95.622 571 24 1 92 661 610108619 610109189 0.000000e+00 915.0
8 TraesCS4A01G009100 chr5B 95.495 111 3 2 687 796 610109527 610109636 3.360000e-40 176.0
9 TraesCS4A01G009100 chr4D 88.235 782 47 10 2526 3278 464757293 464756528 0.000000e+00 893.0
10 TraesCS4A01G009100 chr3A 87.261 785 70 13 2501 3278 218315420 218314659 0.000000e+00 869.0
11 TraesCS4A01G009100 chr3A 91.837 294 24 0 2985 3278 218265286 218264993 8.470000e-111 411.0
12 TraesCS4A01G009100 chr6A 85.714 805 84 15 1 795 542236093 542236876 0.000000e+00 821.0
13 TraesCS4A01G009100 chr7D 77.459 1149 221 27 1121 2250 45838758 45837629 0.000000e+00 652.0
14 TraesCS4A01G009100 chr2A 95.479 376 16 1 293 667 482693434 482693059 1.680000e-167 599.0
15 TraesCS4A01G009100 chr2A 96.484 256 9 0 45 300 482693431 482693686 1.090000e-114 424.0
16 TraesCS4A01G009100 chrUn 76.460 1164 220 38 1120 2249 108255050 108256193 1.700000e-162 582.0
17 TraesCS4A01G009100 chrUn 75.719 1182 232 34 1113 2250 108430302 108431472 2.880000e-150 542.0
18 TraesCS4A01G009100 chrUn 75.755 1159 226 34 1118 2250 108250750 108251879 1.730000e-147 532.0
19 TraesCS4A01G009100 chr2D 83.195 601 73 12 1584 2156 614377576 614376976 2.900000e-145 525.0
20 TraesCS4A01G009100 chr2D 77.333 750 144 19 1120 1854 14127897 14127159 1.410000e-113 420.0
21 TraesCS4A01G009100 chr5D 78.644 693 116 22 1112 1784 441232788 441233468 6.500000e-117 431.0
22 TraesCS4A01G009100 chr2B 73.744 1154 263 30 1120 2250 25844145 25843009 1.820000e-112 416.0
23 TraesCS4A01G009100 chr2B 83.467 375 46 14 1120 1485 25794242 25793875 5.240000e-88 335.0
24 TraesCS4A01G009100 chr1D 75.796 785 151 25 1573 2334 460533066 460533834 8.650000e-96 361.0
25 TraesCS4A01G009100 chr1D 75.450 778 151 26 1573 2327 490369682 490370442 3.130000e-90 342.0
26 TraesCS4A01G009100 chr7A 85.374 294 29 5 2105 2385 5744430 5744722 3.200000e-75 292.0
27 TraesCS4A01G009100 chr6B 79.147 422 49 22 2745 3152 71578290 71578686 4.200000e-64 255.0
28 TraesCS4A01G009100 chr1B 91.045 67 6 0 446 512 671186985 671187051 1.250000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G009100 chr4A 5523346 5526623 3277 False 6054.0 6054 100.0000 1 3278 1 chr4A.!!$F1 3277
1 TraesCS4A01G009100 chr4A 743160333 743161133 800 True 1232.0 1232 94.5140 1 798 1 chr4A.!!$R1 797
2 TraesCS4A01G009100 chr4B 639000453 639001252 799 True 1216.0 1216 94.1250 1 798 1 chr4B.!!$R2 797
3 TraesCS4A01G009100 chr4B 625979885 625981268 1383 False 1074.0 1074 81.0500 1122 2501 1 chr4B.!!$F1 1379
4 TraesCS4A01G009100 chr4B 581162341 581163080 739 True 798.0 798 86.8420 2554 3278 1 chr4B.!!$R1 724
5 TraesCS4A01G009100 chr3B 665470677 665471464 787 True 1138.0 1138 92.6530 1 798 1 chr3B.!!$R1 797
6 TraesCS4A01G009100 chr5B 610108619 610109636 1017 False 545.5 915 95.5585 92 796 2 chr5B.!!$F1 704
7 TraesCS4A01G009100 chr4D 464756528 464757293 765 True 893.0 893 88.2350 2526 3278 1 chr4D.!!$R1 752
8 TraesCS4A01G009100 chr3A 218314659 218315420 761 True 869.0 869 87.2610 2501 3278 1 chr3A.!!$R2 777
9 TraesCS4A01G009100 chr6A 542236093 542236876 783 False 821.0 821 85.7140 1 795 1 chr6A.!!$F1 794
10 TraesCS4A01G009100 chr7D 45837629 45838758 1129 True 652.0 652 77.4590 1121 2250 1 chr7D.!!$R1 1129
11 TraesCS4A01G009100 chrUn 108250750 108256193 5443 False 557.0 582 76.1075 1118 2250 2 chrUn.!!$F2 1132
12 TraesCS4A01G009100 chrUn 108430302 108431472 1170 False 542.0 542 75.7190 1113 2250 1 chrUn.!!$F1 1137
13 TraesCS4A01G009100 chr2D 614376976 614377576 600 True 525.0 525 83.1950 1584 2156 1 chr2D.!!$R2 572
14 TraesCS4A01G009100 chr2D 14127159 14127897 738 True 420.0 420 77.3330 1120 1854 1 chr2D.!!$R1 734
15 TraesCS4A01G009100 chr5D 441232788 441233468 680 False 431.0 431 78.6440 1112 1784 1 chr5D.!!$F1 672
16 TraesCS4A01G009100 chr2B 25843009 25844145 1136 True 416.0 416 73.7440 1120 2250 1 chr2B.!!$R2 1130
17 TraesCS4A01G009100 chr1D 460533066 460533834 768 False 361.0 361 75.7960 1573 2334 1 chr1D.!!$F1 761
18 TraesCS4A01G009100 chr1D 490369682 490370442 760 False 342.0 342 75.4500 1573 2327 1 chr1D.!!$F2 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 1150 0.039888 ATTTGGGCGTTTCGTTTCGG 60.040 50.0 0.00 0.0 0.0 4.30 F
870 1201 0.107831 TCGGCGGGAGATAATTTGGG 59.892 55.0 7.21 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2197 0.036483 TGGTGACATCCATGGTCGTG 60.036 55.0 12.58 11.79 38.10 4.35 R
2840 7605 0.313672 TTTGATGTTGTCGCAAGGGC 59.686 50.0 0.00 0.00 38.47 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 2.294074 GTGGTAGCCAAGTTTGTGTGA 58.706 47.619 0.00 0.00 34.18 3.58
233 235 3.453717 AGCAGCTGGATAGAGATGTTTCA 59.546 43.478 17.12 0.00 31.73 2.69
386 388 0.817654 CAGATGTCGTACTGGGCTGA 59.182 55.000 0.00 0.00 0.00 4.26
481 484 2.259917 TCAACAAGAGCAGAGGATGGA 58.740 47.619 0.00 0.00 0.00 3.41
522 533 2.587522 GGAGTGGGTTGAGAGCTTTTT 58.412 47.619 0.00 0.00 0.00 1.94
577 590 8.947115 CGTGTAGTCTATGTCTGGATAATATGA 58.053 37.037 0.00 0.00 0.00 2.15
661 674 3.626930 ACCATTTTTCCCATAGCGCTTA 58.373 40.909 18.68 1.37 0.00 3.09
701 1027 1.972075 GAGGCCAAGGTAGGGTATCTC 59.028 57.143 5.01 0.00 0.00 2.75
748 1077 6.780706 TGACTCTGTTTATTCGGTTTCTTC 57.219 37.500 0.00 0.00 0.00 2.87
814 1145 3.378911 AAAATCATTTGGGCGTTTCGT 57.621 38.095 0.00 0.00 0.00 3.85
815 1146 3.378911 AAATCATTTGGGCGTTTCGTT 57.621 38.095 0.00 0.00 0.00 3.85
816 1147 3.378911 AATCATTTGGGCGTTTCGTTT 57.621 38.095 0.00 0.00 0.00 3.60
817 1148 2.409152 TCATTTGGGCGTTTCGTTTC 57.591 45.000 0.00 0.00 0.00 2.78
818 1149 1.049251 CATTTGGGCGTTTCGTTTCG 58.951 50.000 0.00 0.00 0.00 3.46
819 1150 0.039888 ATTTGGGCGTTTCGTTTCGG 60.040 50.000 0.00 0.00 0.00 4.30
820 1151 1.094073 TTTGGGCGTTTCGTTTCGGA 61.094 50.000 0.00 0.00 0.00 4.55
821 1152 1.774046 TTGGGCGTTTCGTTTCGGAC 61.774 55.000 0.00 0.00 0.00 4.79
822 1153 2.246042 GGGCGTTTCGTTTCGGACA 61.246 57.895 0.00 0.00 0.00 4.02
823 1154 1.203313 GGCGTTTCGTTTCGGACAG 59.797 57.895 0.00 0.00 0.00 3.51
824 1155 1.203313 GCGTTTCGTTTCGGACAGG 59.797 57.895 0.00 0.00 0.00 4.00
825 1156 1.203313 CGTTTCGTTTCGGACAGGC 59.797 57.895 0.00 0.00 0.00 4.85
826 1157 1.572941 GTTTCGTTTCGGACAGGCC 59.427 57.895 0.00 0.00 0.00 5.19
827 1158 1.598685 TTTCGTTTCGGACAGGCCC 60.599 57.895 0.00 0.00 0.00 5.80
836 1167 3.747976 GACAGGCCCGCGCAAATT 61.748 61.111 8.75 0.00 36.38 1.82
837 1168 3.281359 GACAGGCCCGCGCAAATTT 62.281 57.895 8.75 0.00 36.38 1.82
838 1169 2.048316 CAGGCCCGCGCAAATTTT 60.048 55.556 8.75 0.00 36.38 1.82
839 1170 2.048316 AGGCCCGCGCAAATTTTG 60.048 55.556 8.75 4.72 36.38 2.44
840 1171 3.117812 GGCCCGCGCAAATTTTGG 61.118 61.111 8.75 0.00 36.38 3.28
841 1172 2.048690 GCCCGCGCAAATTTTGGA 60.049 55.556 8.75 0.00 34.03 3.53
842 1173 1.447663 GCCCGCGCAAATTTTGGAT 60.448 52.632 8.75 0.00 34.03 3.41
843 1174 0.179124 GCCCGCGCAAATTTTGGATA 60.179 50.000 8.75 0.00 34.03 2.59
844 1175 1.737363 GCCCGCGCAAATTTTGGATAA 60.737 47.619 8.75 0.00 34.03 1.75
845 1176 2.192624 CCCGCGCAAATTTTGGATAAG 58.807 47.619 8.75 0.00 0.00 1.73
846 1177 2.416701 CCCGCGCAAATTTTGGATAAGT 60.417 45.455 8.75 0.00 0.00 2.24
847 1178 3.249917 CCGCGCAAATTTTGGATAAGTT 58.750 40.909 8.75 0.00 0.00 2.66
848 1179 3.060628 CCGCGCAAATTTTGGATAAGTTG 59.939 43.478 8.75 0.00 36.48 3.16
849 1180 3.060628 CGCGCAAATTTTGGATAAGTTGG 59.939 43.478 8.75 0.00 34.60 3.77
850 1181 3.370672 GCGCAAATTTTGGATAAGTTGGG 59.629 43.478 0.30 8.56 44.01 4.12
851 1182 4.565022 CGCAAATTTTGGATAAGTTGGGT 58.435 39.130 10.96 0.00 39.58 4.51
852 1183 4.625311 CGCAAATTTTGGATAAGTTGGGTC 59.375 41.667 10.96 0.00 39.58 4.46
853 1184 4.625311 GCAAATTTTGGATAAGTTGGGTCG 59.375 41.667 10.96 0.00 34.60 4.79
854 1185 5.167845 CAAATTTTGGATAAGTTGGGTCGG 58.832 41.667 0.97 0.00 31.45 4.79
855 1186 1.828979 TTTGGATAAGTTGGGTCGGC 58.171 50.000 0.00 0.00 0.00 5.54
856 1187 0.391927 TTGGATAAGTTGGGTCGGCG 60.392 55.000 0.00 0.00 0.00 6.46
857 1188 1.523032 GGATAAGTTGGGTCGGCGG 60.523 63.158 7.21 0.00 0.00 6.13
858 1189 1.523032 GATAAGTTGGGTCGGCGGG 60.523 63.158 7.21 0.00 0.00 6.13
859 1190 1.963464 GATAAGTTGGGTCGGCGGGA 61.963 60.000 7.21 0.00 0.00 5.14
860 1191 1.968050 ATAAGTTGGGTCGGCGGGAG 61.968 60.000 7.21 0.00 0.00 4.30
862 1193 3.782443 GTTGGGTCGGCGGGAGAT 61.782 66.667 7.21 0.00 0.00 2.75
863 1194 2.042741 TTGGGTCGGCGGGAGATA 60.043 61.111 7.21 0.00 0.00 1.98
864 1195 1.686455 TTGGGTCGGCGGGAGATAA 60.686 57.895 7.21 0.00 0.00 1.75
865 1196 1.052124 TTGGGTCGGCGGGAGATAAT 61.052 55.000 7.21 0.00 0.00 1.28
866 1197 1.052124 TGGGTCGGCGGGAGATAATT 61.052 55.000 7.21 0.00 0.00 1.40
867 1198 0.108019 GGGTCGGCGGGAGATAATTT 59.892 55.000 7.21 0.00 0.00 1.82
868 1199 1.226746 GGTCGGCGGGAGATAATTTG 58.773 55.000 7.21 0.00 0.00 2.32
869 1200 1.226746 GTCGGCGGGAGATAATTTGG 58.773 55.000 7.21 0.00 0.00 3.28
870 1201 0.107831 TCGGCGGGAGATAATTTGGG 59.892 55.000 7.21 0.00 0.00 4.12
871 1202 1.515521 CGGCGGGAGATAATTTGGGC 61.516 60.000 0.00 0.00 0.00 5.36
872 1203 1.179174 GGCGGGAGATAATTTGGGCC 61.179 60.000 0.00 0.00 0.00 5.80
873 1204 1.179174 GCGGGAGATAATTTGGGCCC 61.179 60.000 17.59 17.59 0.00 5.80
874 1205 0.184933 CGGGAGATAATTTGGGCCCA 59.815 55.000 24.45 24.45 35.26 5.36
875 1206 1.410932 CGGGAGATAATTTGGGCCCAA 60.411 52.381 34.07 34.07 35.26 4.12
877 1208 2.434336 GGGAGATAATTTGGGCCCAAAC 59.566 50.000 44.79 32.86 46.80 2.93
878 1209 2.434336 GGAGATAATTTGGGCCCAAACC 59.566 50.000 44.79 35.34 46.80 3.27
879 1210 3.103742 GAGATAATTTGGGCCCAAACCA 58.896 45.455 44.79 35.04 46.80 3.67
880 1211 2.837591 AGATAATTTGGGCCCAAACCAC 59.162 45.455 44.79 33.34 46.80 4.16
881 1212 0.969894 TAATTTGGGCCCAAACCACG 59.030 50.000 44.79 0.00 46.80 4.94
882 1213 1.763546 AATTTGGGCCCAAACCACGG 61.764 55.000 44.79 0.00 46.80 4.94
889 1220 3.966543 CCAAACCACGGGCCTCCT 61.967 66.667 0.84 0.00 0.00 3.69
890 1221 2.115266 CAAACCACGGGCCTCCTT 59.885 61.111 0.84 0.00 0.00 3.36
891 1222 2.115266 AAACCACGGGCCTCCTTG 59.885 61.111 0.84 0.00 32.61 3.61
892 1223 4.660938 AACCACGGGCCTCCTTGC 62.661 66.667 0.84 0.00 31.57 4.01
894 1225 4.351054 CCACGGGCCTCCTTGCTT 62.351 66.667 0.84 0.00 31.57 3.91
895 1226 3.058160 CACGGGCCTCCTTGCTTG 61.058 66.667 0.84 0.00 0.00 4.01
896 1227 3.249189 ACGGGCCTCCTTGCTTGA 61.249 61.111 0.84 0.00 0.00 3.02
897 1228 2.437359 CGGGCCTCCTTGCTTGAG 60.437 66.667 0.84 0.00 0.00 3.02
898 1229 2.759795 GGGCCTCCTTGCTTGAGT 59.240 61.111 0.84 0.00 0.00 3.41
899 1230 1.377856 GGGCCTCCTTGCTTGAGTC 60.378 63.158 0.84 0.00 0.00 3.36
900 1231 1.743252 GGCCTCCTTGCTTGAGTCG 60.743 63.158 0.00 0.00 0.00 4.18
901 1232 1.743252 GCCTCCTTGCTTGAGTCGG 60.743 63.158 0.00 0.00 0.00 4.79
902 1233 1.975327 CCTCCTTGCTTGAGTCGGA 59.025 57.895 0.00 0.00 0.00 4.55
903 1234 0.390472 CCTCCTTGCTTGAGTCGGAC 60.390 60.000 0.00 0.00 0.00 4.79
904 1235 0.390472 CTCCTTGCTTGAGTCGGACC 60.390 60.000 4.14 0.00 0.00 4.46
905 1236 1.376037 CCTTGCTTGAGTCGGACCC 60.376 63.158 4.14 0.00 0.00 4.46
906 1237 1.738099 CTTGCTTGAGTCGGACCCG 60.738 63.158 4.14 1.31 41.35 5.28
907 1238 3.876589 TTGCTTGAGTCGGACCCGC 62.877 63.158 4.14 3.32 39.59 6.13
908 1239 4.070552 GCTTGAGTCGGACCCGCT 62.071 66.667 4.14 4.43 39.59 5.52
909 1240 2.707849 GCTTGAGTCGGACCCGCTA 61.708 63.158 4.14 0.00 39.59 4.26
910 1241 1.888018 CTTGAGTCGGACCCGCTAA 59.112 57.895 4.14 0.00 39.59 3.09
911 1242 0.245539 CTTGAGTCGGACCCGCTAAA 59.754 55.000 4.14 3.53 39.59 1.85
912 1243 0.680618 TTGAGTCGGACCCGCTAAAA 59.319 50.000 4.14 1.22 39.59 1.52
913 1244 0.899720 TGAGTCGGACCCGCTAAAAT 59.100 50.000 4.14 0.00 39.59 1.82
914 1245 1.134907 TGAGTCGGACCCGCTAAAATC 60.135 52.381 4.14 0.00 39.59 2.17
915 1246 0.179119 AGTCGGACCCGCTAAAATCG 60.179 55.000 4.14 0.00 39.59 3.34
916 1247 1.519898 TCGGACCCGCTAAAATCGC 60.520 57.895 3.13 0.00 39.59 4.58
917 1248 2.531376 CGGACCCGCTAAAATCGCC 61.531 63.158 0.00 0.00 0.00 5.54
918 1249 2.184830 GGACCCGCTAAAATCGCCC 61.185 63.158 0.00 0.00 0.00 6.13
919 1250 2.512974 ACCCGCTAAAATCGCCCG 60.513 61.111 0.00 0.00 0.00 6.13
920 1251 2.512974 CCCGCTAAAATCGCCCGT 60.513 61.111 0.00 0.00 0.00 5.28
921 1252 2.531376 CCCGCTAAAATCGCCCGTC 61.531 63.158 0.00 0.00 0.00 4.79
922 1253 2.531376 CCGCTAAAATCGCCCGTCC 61.531 63.158 0.00 0.00 0.00 4.79
923 1254 2.531376 CGCTAAAATCGCCCGTCCC 61.531 63.158 0.00 0.00 0.00 4.46
924 1255 1.450669 GCTAAAATCGCCCGTCCCA 60.451 57.895 0.00 0.00 0.00 4.37
925 1256 1.712018 GCTAAAATCGCCCGTCCCAC 61.712 60.000 0.00 0.00 0.00 4.61
926 1257 0.107848 CTAAAATCGCCCGTCCCACT 60.108 55.000 0.00 0.00 0.00 4.00
927 1258 0.391927 TAAAATCGCCCGTCCCACTG 60.392 55.000 0.00 0.00 0.00 3.66
928 1259 2.119484 AAAATCGCCCGTCCCACTGA 62.119 55.000 0.00 0.00 0.00 3.41
929 1260 2.119484 AAATCGCCCGTCCCACTGAA 62.119 55.000 0.00 0.00 0.00 3.02
930 1261 2.798148 AATCGCCCGTCCCACTGAAC 62.798 60.000 0.00 0.00 0.00 3.18
932 1263 4.717313 GCCCGTCCCACTGAACCC 62.717 72.222 0.00 0.00 0.00 4.11
933 1264 2.928396 CCCGTCCCACTGAACCCT 60.928 66.667 0.00 0.00 0.00 4.34
934 1265 1.611261 CCCGTCCCACTGAACCCTA 60.611 63.158 0.00 0.00 0.00 3.53
935 1266 1.595357 CCGTCCCACTGAACCCTAC 59.405 63.158 0.00 0.00 0.00 3.18
936 1267 1.595357 CGTCCCACTGAACCCTACC 59.405 63.158 0.00 0.00 0.00 3.18
937 1268 1.189524 CGTCCCACTGAACCCTACCA 61.190 60.000 0.00 0.00 0.00 3.25
938 1269 0.613777 GTCCCACTGAACCCTACCAG 59.386 60.000 0.00 0.00 36.53 4.00
939 1270 0.192566 TCCCACTGAACCCTACCAGT 59.807 55.000 0.00 0.00 43.73 4.00
940 1271 0.613777 CCCACTGAACCCTACCAGTC 59.386 60.000 0.00 0.00 41.26 3.51
941 1272 0.246635 CCACTGAACCCTACCAGTCG 59.753 60.000 0.00 0.00 41.26 4.18
942 1273 0.389948 CACTGAACCCTACCAGTCGC 60.390 60.000 0.00 0.00 41.26 5.19
943 1274 0.542232 ACTGAACCCTACCAGTCGCT 60.542 55.000 0.00 0.00 39.19 4.93
944 1275 0.173708 CTGAACCCTACCAGTCGCTC 59.826 60.000 0.00 0.00 0.00 5.03
945 1276 1.139095 GAACCCTACCAGTCGCTCG 59.861 63.158 0.00 0.00 0.00 5.03
946 1277 2.885774 GAACCCTACCAGTCGCTCGC 62.886 65.000 0.00 0.00 0.00 5.03
947 1278 3.141488 CCCTACCAGTCGCTCGCT 61.141 66.667 0.00 0.00 0.00 4.93
948 1279 2.103143 CCTACCAGTCGCTCGCTG 59.897 66.667 6.70 6.70 0.00 5.18
949 1280 2.701780 CCTACCAGTCGCTCGCTGT 61.702 63.158 10.84 4.67 32.41 4.40
950 1281 1.226435 CTACCAGTCGCTCGCTGTC 60.226 63.158 10.84 0.00 32.41 3.51
951 1282 1.649390 CTACCAGTCGCTCGCTGTCT 61.649 60.000 10.84 2.08 32.41 3.41
952 1283 1.645704 TACCAGTCGCTCGCTGTCTC 61.646 60.000 10.84 0.00 32.41 3.36
953 1284 2.202544 CAGTCGCTCGCTGTCTCC 60.203 66.667 5.85 0.00 0.00 3.71
954 1285 3.444805 AGTCGCTCGCTGTCTCCC 61.445 66.667 0.00 0.00 0.00 4.30
955 1286 4.500116 GTCGCTCGCTGTCTCCCC 62.500 72.222 0.00 0.00 0.00 4.81
962 1293 4.554036 GCTGTCTCCCCCGGCATC 62.554 72.222 0.00 0.00 34.28 3.91
963 1294 4.227134 CTGTCTCCCCCGGCATCG 62.227 72.222 0.00 0.00 0.00 3.84
964 1295 4.770362 TGTCTCCCCCGGCATCGA 62.770 66.667 0.00 0.00 39.00 3.59
965 1296 3.917760 GTCTCCCCCGGCATCGAG 61.918 72.222 0.00 0.00 39.00 4.04
1002 1333 4.899239 GACCCCAGCTCCGCGATG 62.899 72.222 8.23 0.00 0.00 3.84
1004 1335 4.899239 CCCCAGCTCCGCGATGTC 62.899 72.222 8.23 0.00 0.00 3.06
1005 1336 4.899239 CCCAGCTCCGCGATGTCC 62.899 72.222 8.23 0.00 0.00 4.02
1015 1346 4.530857 CGATGTCCGCCCTGACCC 62.531 72.222 0.00 0.00 34.25 4.46
1016 1347 4.176752 GATGTCCGCCCTGACCCC 62.177 72.222 0.00 0.00 34.25 4.95
1019 1350 4.176752 GTCCGCCCTGACCCCATC 62.177 72.222 0.00 0.00 0.00 3.51
1022 1353 3.550431 CGCCCTGACCCCATCGAT 61.550 66.667 0.00 0.00 0.00 3.59
1023 1354 2.427753 GCCCTGACCCCATCGATC 59.572 66.667 0.00 0.00 0.00 3.69
1024 1355 3.151906 CCCTGACCCCATCGATCC 58.848 66.667 0.00 0.00 0.00 3.36
1025 1356 1.460305 CCCTGACCCCATCGATCCT 60.460 63.158 0.00 0.00 0.00 3.24
1026 1357 1.476007 CCCTGACCCCATCGATCCTC 61.476 65.000 0.00 0.00 0.00 3.71
1027 1358 1.476007 CCTGACCCCATCGATCCTCC 61.476 65.000 0.00 0.00 0.00 4.30
1028 1359 1.459539 TGACCCCATCGATCCTCCC 60.460 63.158 0.00 0.00 0.00 4.30
1029 1360 2.122369 ACCCCATCGATCCTCCCC 60.122 66.667 0.00 0.00 0.00 4.81
1030 1361 2.930562 CCCCATCGATCCTCCCCC 60.931 72.222 0.00 0.00 0.00 5.40
1031 1362 3.314331 CCCATCGATCCTCCCCCG 61.314 72.222 0.00 0.00 0.00 5.73
1032 1363 4.008933 CCATCGATCCTCCCCCGC 62.009 72.222 0.00 0.00 0.00 6.13
1033 1364 4.363990 CATCGATCCTCCCCCGCG 62.364 72.222 0.00 0.00 0.00 6.46
1055 1386 2.995574 CTGTCCCGACCCCGTCTT 60.996 66.667 0.00 0.00 0.00 3.01
1056 1387 2.993264 TGTCCCGACCCCGTCTTC 60.993 66.667 0.00 0.00 0.00 2.87
1057 1388 3.767806 GTCCCGACCCCGTCTTCC 61.768 72.222 0.00 0.00 0.00 3.46
1066 1397 4.697756 CCGTCTTCCCCGCAGCAA 62.698 66.667 0.00 0.00 0.00 3.91
1067 1398 2.436646 CGTCTTCCCCGCAGCAAT 60.437 61.111 0.00 0.00 0.00 3.56
1068 1399 2.753966 CGTCTTCCCCGCAGCAATG 61.754 63.158 0.00 0.00 0.00 2.82
1069 1400 2.045045 TCTTCCCCGCAGCAATGG 60.045 61.111 0.00 0.00 0.00 3.16
1070 1401 3.830192 CTTCCCCGCAGCAATGGC 61.830 66.667 0.00 0.00 41.61 4.40
1114 1445 3.691342 CGGCGGAACCTGAGTCCA 61.691 66.667 0.00 0.00 35.61 4.02
1131 1462 1.751162 CACCACAACCACCACCGTT 60.751 57.895 0.00 0.00 0.00 4.44
1144 1475 3.702048 CCGTTTCCTCCCTCGGCA 61.702 66.667 0.00 0.00 36.68 5.69
1268 1600 4.082523 CTTCCGCCGCCTCTTCCA 62.083 66.667 0.00 0.00 0.00 3.53
1322 1654 2.278206 CGAGACCGACGGCATCTG 60.278 66.667 15.39 5.26 38.22 2.90
1480 1812 2.203126 GCGCCCTCCTCTGGAATG 60.203 66.667 0.00 0.00 0.00 2.67
1491 1823 1.452651 CTGGAATGCGCTCCATGGT 60.453 57.895 17.78 0.00 44.59 3.55
1492 1824 1.001020 TGGAATGCGCTCCATGGTT 60.001 52.632 13.98 0.00 40.71 3.67
1596 1958 2.951229 TCCTTGGTTTTCACCTCCTC 57.049 50.000 0.00 0.00 44.61 3.71
1598 1960 3.593942 TCCTTGGTTTTCACCTCCTCTA 58.406 45.455 0.00 0.00 44.61 2.43
1623 1985 1.592223 CGAGAAGCCCTCCTCGTTT 59.408 57.895 0.00 0.00 44.99 3.60
1683 2047 2.564975 GCCGTCTTCTCGTCCGAA 59.435 61.111 0.00 0.00 0.00 4.30
1742 2112 3.964909 GTGGAAACAACAGCCTAAAGTG 58.035 45.455 0.00 0.00 46.06 3.16
1766 2136 0.762842 ACTAGCACACTGGTGGGTGA 60.763 55.000 2.31 0.00 45.38 4.02
1818 2197 2.061773 CACATGATAAGGATCGACGCC 58.938 52.381 0.00 0.00 34.49 5.68
1925 6625 4.202441 GGTGGATTCTGTATTGCTCATGT 58.798 43.478 0.00 0.00 0.00 3.21
2020 6731 0.813821 GGCAATCTCTTTGGGTGCTC 59.186 55.000 0.00 0.00 35.75 4.26
2023 6734 2.094854 GCAATCTCTTTGGGTGCTCAAG 60.095 50.000 0.00 0.00 35.75 3.02
2084 6816 2.790433 TGTGCAAGTTAGGGATGGAAC 58.210 47.619 0.00 0.00 0.00 3.62
2099 6831 4.511826 GGATGGAACCGCTTACTTATCAAG 59.488 45.833 0.00 0.00 0.00 3.02
2122 6857 1.064166 CAATGATGACCCCTTCTGGCT 60.064 52.381 0.00 0.00 0.00 4.75
2150 6885 2.546584 GCTGCTGGTTTTTCTCCCTTTG 60.547 50.000 0.00 0.00 0.00 2.77
2211 6946 1.423584 ATGATGGTCGTGGCTATCCA 58.576 50.000 0.00 0.00 40.85 3.41
2250 6985 5.560724 CCTCCTTCTTTAGTTGGTGATGAA 58.439 41.667 0.00 0.00 0.00 2.57
2252 6987 5.003804 TCCTTCTTTAGTTGGTGATGAAGC 58.996 41.667 0.00 0.00 29.23 3.86
2272 7007 1.873591 CACCTGAACTTGAAGGTTCGG 59.126 52.381 7.06 7.06 44.63 4.30
2289 7024 1.893137 TCGGAGTGAAGTGTATGCAGT 59.107 47.619 0.00 0.00 0.00 4.40
2293 7028 3.403038 GAGTGAAGTGTATGCAGTTGGT 58.597 45.455 8.74 0.00 38.30 3.67
2298 7033 0.109781 GTGTATGCAGTTGGTTGCCG 60.110 55.000 0.00 0.00 43.43 5.69
2309 7044 2.095847 GGTTGCCGTCGCGTATGAA 61.096 57.895 5.77 0.00 38.08 2.57
2316 7051 1.257936 CCGTCGCGTATGAAGAAATGG 59.742 52.381 5.77 0.00 0.00 3.16
2317 7052 1.924524 CGTCGCGTATGAAGAAATGGT 59.075 47.619 5.77 0.00 0.00 3.55
2335 7070 3.078097 TGGTTGACAATTCGTGGGTATG 58.922 45.455 0.00 0.00 0.00 2.39
2338 7073 4.201910 GGTTGACAATTCGTGGGTATGATG 60.202 45.833 0.00 0.00 0.00 3.07
2341 7076 5.436175 TGACAATTCGTGGGTATGATGAAT 58.564 37.500 0.00 0.00 31.63 2.57
2342 7077 5.296531 TGACAATTCGTGGGTATGATGAATG 59.703 40.000 0.00 0.00 30.94 2.67
2343 7078 5.436175 ACAATTCGTGGGTATGATGAATGA 58.564 37.500 0.00 0.00 30.94 2.57
2344 7079 5.885352 ACAATTCGTGGGTATGATGAATGAA 59.115 36.000 0.00 0.00 30.94 2.57
2345 7080 6.183360 ACAATTCGTGGGTATGATGAATGAAC 60.183 38.462 0.00 0.00 30.94 3.18
2346 7081 4.753516 TCGTGGGTATGATGAATGAACT 57.246 40.909 0.00 0.00 0.00 3.01
2347 7082 4.441792 TCGTGGGTATGATGAATGAACTG 58.558 43.478 0.00 0.00 0.00 3.16
2348 7083 4.081142 TCGTGGGTATGATGAATGAACTGT 60.081 41.667 0.00 0.00 0.00 3.55
2349 7084 4.635765 CGTGGGTATGATGAATGAACTGTT 59.364 41.667 0.00 0.00 0.00 3.16
2350 7085 5.815222 CGTGGGTATGATGAATGAACTGTTA 59.185 40.000 0.00 0.00 0.00 2.41
2351 7086 6.483307 CGTGGGTATGATGAATGAACTGTTAT 59.517 38.462 0.00 0.00 0.00 1.89
2352 7087 7.307396 CGTGGGTATGATGAATGAACTGTTATC 60.307 40.741 0.00 0.00 0.00 1.75
2353 7088 7.498900 GTGGGTATGATGAATGAACTGTTATCA 59.501 37.037 5.64 5.64 0.00 2.15
2354 7089 8.052141 TGGGTATGATGAATGAACTGTTATCAA 58.948 33.333 6.93 0.00 0.00 2.57
2355 7090 8.902806 GGGTATGATGAATGAACTGTTATCAAA 58.097 33.333 6.93 1.44 0.00 2.69
2368 7103 8.691661 AACTGTTATCAAATGTACTTTGGAGT 57.308 30.769 14.02 1.75 43.71 3.85
2369 7104 8.324163 ACTGTTATCAAATGTACTTTGGAGTC 57.676 34.615 14.02 5.14 43.71 3.36
2374 7109 5.483811 TCAAATGTACTTTGGAGTCGCATA 58.516 37.500 14.02 0.00 43.71 3.14
2376 7111 6.428465 TCAAATGTACTTTGGAGTCGCATAAA 59.572 34.615 14.02 0.00 43.71 1.40
2378 7113 5.600908 TGTACTTTGGAGTCGCATAAAAC 57.399 39.130 0.00 0.00 37.33 2.43
2386 7121 5.529791 TGGAGTCGCATAAAACTATCTAGC 58.470 41.667 0.00 0.00 0.00 3.42
2391 7126 4.039245 TCGCATAAAACTATCTAGCTGGCT 59.961 41.667 0.00 0.00 0.00 4.75
2401 7136 7.709149 ACTATCTAGCTGGCTTTGAAAATTT 57.291 32.000 0.00 0.00 0.00 1.82
2404 7139 6.017400 TCTAGCTGGCTTTGAAAATTTGAG 57.983 37.500 0.00 0.00 0.00 3.02
2406 7141 4.625028 AGCTGGCTTTGAAAATTTGAGAC 58.375 39.130 0.00 0.00 0.00 3.36
2408 7143 4.810491 GCTGGCTTTGAAAATTTGAGACAA 59.190 37.500 0.00 0.00 0.00 3.18
2409 7144 5.277011 GCTGGCTTTGAAAATTTGAGACAAC 60.277 40.000 0.00 0.00 0.00 3.32
2410 7145 5.728471 TGGCTTTGAAAATTTGAGACAACA 58.272 33.333 0.00 0.00 0.00 3.33
2426 7161 9.730705 TTGAGACAACATTTCTTCTATCTTCAT 57.269 29.630 0.00 0.00 0.00 2.57
2429 7164 9.730705 AGACAACATTTCTTCTATCTTCATTCA 57.269 29.630 0.00 0.00 0.00 2.57
2430 7165 9.985318 GACAACATTTCTTCTATCTTCATTCAG 57.015 33.333 0.00 0.00 0.00 3.02
2447 7187 8.628630 TTCATTCAGTGTAATGGTTATTCACA 57.371 30.769 12.43 0.00 37.44 3.58
2455 7195 9.770097 AGTGTAATGGTTATTCACATAGAGATG 57.230 33.333 0.00 0.00 39.16 2.90
2461 7201 7.629157 TGGTTATTCACATAGAGATGTTTGGA 58.371 34.615 0.00 0.00 44.18 3.53
2463 7203 8.562892 GGTTATTCACATAGAGATGTTTGGATG 58.437 37.037 0.00 0.00 44.18 3.51
2464 7204 6.630444 ATTCACATAGAGATGTTTGGATGC 57.370 37.500 0.00 0.00 44.18 3.91
2472 7212 6.540438 AGAGATGTTTGGATGCATTGAAAT 57.460 33.333 0.00 0.00 0.00 2.17
2473 7213 6.942976 AGAGATGTTTGGATGCATTGAAATT 58.057 32.000 0.00 0.00 0.00 1.82
2479 7219 6.093771 TGTTTGGATGCATTGAAATTATTGGC 59.906 34.615 0.00 0.00 0.00 4.52
2483 7223 4.446994 TGCATTGAAATTATTGGCACGA 57.553 36.364 0.00 0.00 0.00 4.35
2491 7231 2.121291 TTATTGGCACGATGCTGGAA 57.879 45.000 9.31 2.53 44.28 3.53
2497 7237 2.017049 GGCACGATGCTGGAACTAATT 58.983 47.619 9.31 0.00 44.28 1.40
2524 7264 2.295885 GGGGAAAGTCGTCGATCTCTA 58.704 52.381 0.00 0.00 0.00 2.43
2542 7286 0.891904 TAAAACCCTGCGCCTTCCAC 60.892 55.000 4.18 0.00 0.00 4.02
2569 7313 1.135333 CTAAGAAGCCCGAGGAGTGTC 59.865 57.143 0.00 0.00 0.00 3.67
2579 7323 2.435059 GGAGTGTCTTCAGCGCCC 60.435 66.667 2.29 0.00 0.00 6.13
2654 7398 7.367285 TCATTTTAGGAGCAACATGTAACAAC 58.633 34.615 0.00 0.00 0.00 3.32
2656 7400 5.940192 TTAGGAGCAACATGTAACAACAG 57.060 39.130 0.00 0.00 0.00 3.16
2695 7457 8.093927 TGCACAAGATTACGATATAATCCATCA 58.906 33.333 0.00 0.00 35.19 3.07
2700 7462 8.709386 AGATTACGATATAATCCATCAACTGC 57.291 34.615 0.00 0.00 35.19 4.40
2724 7488 8.755028 TGCTCTACAAACTGTCTATTTGGTATA 58.245 33.333 2.84 0.00 40.64 1.47
2746 7510 5.201713 AGACAAGTTTCAAGTCATCGAGA 57.798 39.130 0.00 0.00 34.80 4.04
2837 7602 4.644685 ACAACTAACATGCCTGACTTTGTT 59.355 37.500 0.00 0.00 36.37 2.83
2839 7604 4.207165 ACTAACATGCCTGACTTTGTTGT 58.793 39.130 0.00 0.00 34.39 3.32
2840 7605 3.441496 AACATGCCTGACTTTGTTGTG 57.559 42.857 0.00 0.00 31.45 3.33
2847 7612 0.459489 TGACTTTGTTGTGCCCTTGC 59.541 50.000 0.00 0.00 38.26 4.01
2863 7628 2.290367 CCTTGCGACAACATCAAACTGA 59.710 45.455 0.00 0.00 0.00 3.41
2958 7735 1.307097 GCTCATCAGTCCATTCTGGC 58.693 55.000 0.00 0.00 37.47 4.85
2961 7738 1.012086 CATCAGTCCATTCTGGCACG 58.988 55.000 0.00 0.00 37.47 5.34
3000 7783 0.693622 TGGAAGGTAATGTTCCGCCA 59.306 50.000 0.00 0.00 45.75 5.69
3042 7825 0.111253 CTTGAGTTGGCTGGAGGGTT 59.889 55.000 0.00 0.00 0.00 4.11
3102 7888 1.303309 GCTTCCTGATCGGATTGTGG 58.697 55.000 2.08 0.00 42.70 4.17
3125 7911 3.068732 TCACCGAGGAAATCATCTGCTAG 59.931 47.826 0.00 0.00 0.00 3.42
3154 7940 0.813184 ACCATTGCCATCAGAAAGCG 59.187 50.000 0.00 0.00 0.00 4.68
3193 7979 3.603158 TTTTACTACGAGGCTGCATCA 57.397 42.857 15.07 0.00 0.00 3.07
3248 8034 2.778299 ACAGGAAGCTTGCGAACAATA 58.222 42.857 12.66 0.00 34.61 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.403049 TCTAGTCAACACACTGTTTCTGAAA 58.597 36.000 0.00 0.00 38.77 2.69
21 22 9.561069 AAATTATCTCTAGTCAACACACTGTTT 57.439 29.630 0.00 0.00 38.77 2.83
153 154 2.986728 AGTGACATTCCTAACAACCCCT 59.013 45.455 0.00 0.00 0.00 4.79
233 235 7.615403 TGCTACTGTTTGTCTCATCTTCTTAT 58.385 34.615 0.00 0.00 0.00 1.73
367 369 0.817654 TCAGCCCAGTACGACATCTG 59.182 55.000 0.00 0.00 0.00 2.90
386 388 5.885912 TGTTGCCTTTCTTTTCTCTGTAAGT 59.114 36.000 0.00 0.00 33.76 2.24
432 434 4.515944 CCATTTGCAACATCAACCAACAAT 59.484 37.500 0.00 0.00 0.00 2.71
481 484 4.771127 ACGTCTTGTCATTGGCGT 57.229 50.000 0.99 0.99 0.00 5.68
522 533 5.529430 TCCAGCGAAGAAACTCAAAACATAA 59.471 36.000 0.00 0.00 0.00 1.90
577 590 9.593134 CTAAACAGTGACAGAGCTTAGAATAAT 57.407 33.333 0.00 0.00 0.00 1.28
580 593 7.233389 TCTAAACAGTGACAGAGCTTAGAAT 57.767 36.000 0.00 0.00 0.00 2.40
661 674 3.815507 TCCAGGGGGAGAAAGACTAAAT 58.184 45.455 0.00 0.00 38.64 1.40
701 1027 3.436700 AAAAGTTTGTTTCTCAGCCCG 57.563 42.857 0.00 0.00 0.00 6.13
748 1077 5.981315 CCCCGATTTCATTTCATTGAATGAG 59.019 40.000 8.01 0.00 44.33 2.90
798 1129 1.334239 CGAAACGAAACGCCCAAATGA 60.334 47.619 0.00 0.00 0.00 2.57
799 1130 1.049251 CGAAACGAAACGCCCAAATG 58.951 50.000 0.00 0.00 0.00 2.32
800 1131 0.039888 CCGAAACGAAACGCCCAAAT 60.040 50.000 0.00 0.00 0.00 2.32
801 1132 1.094073 TCCGAAACGAAACGCCCAAA 61.094 50.000 0.00 0.00 0.00 3.28
802 1133 1.523258 TCCGAAACGAAACGCCCAA 60.523 52.632 0.00 0.00 0.00 4.12
803 1134 2.108566 TCCGAAACGAAACGCCCA 59.891 55.556 0.00 0.00 0.00 5.36
804 1135 2.166584 CTGTCCGAAACGAAACGCCC 62.167 60.000 0.00 0.00 0.00 6.13
805 1136 1.203313 CTGTCCGAAACGAAACGCC 59.797 57.895 0.00 0.00 0.00 5.68
806 1137 1.203313 CCTGTCCGAAACGAAACGC 59.797 57.895 0.00 0.00 0.00 4.84
807 1138 1.203313 GCCTGTCCGAAACGAAACG 59.797 57.895 0.00 0.00 0.00 3.60
808 1139 1.572941 GGCCTGTCCGAAACGAAAC 59.427 57.895 0.00 0.00 0.00 2.78
809 1140 1.598685 GGGCCTGTCCGAAACGAAA 60.599 57.895 0.84 0.00 34.94 3.46
810 1141 2.031465 GGGCCTGTCCGAAACGAA 59.969 61.111 0.84 0.00 34.94 3.85
819 1150 2.763627 AAAATTTGCGCGGGCCTGTC 62.764 55.000 22.70 6.22 38.85 3.51
820 1151 2.866726 AAAATTTGCGCGGGCCTGT 61.867 52.632 22.70 4.32 38.85 4.00
821 1152 2.048316 AAAATTTGCGCGGGCCTG 60.048 55.556 22.70 7.41 38.85 4.85
822 1153 2.048316 CAAAATTTGCGCGGGCCT 60.048 55.556 22.70 3.61 38.85 5.19
823 1154 2.850806 ATCCAAAATTTGCGCGGGCC 62.851 55.000 22.70 0.00 38.85 5.80
824 1155 0.179124 TATCCAAAATTTGCGCGGGC 60.179 50.000 18.81 18.81 40.52 6.13
825 1156 2.192624 CTTATCCAAAATTTGCGCGGG 58.807 47.619 8.83 0.00 0.00 6.13
826 1157 2.874849 ACTTATCCAAAATTTGCGCGG 58.125 42.857 8.83 0.00 0.00 6.46
827 1158 3.060628 CCAACTTATCCAAAATTTGCGCG 59.939 43.478 0.00 0.00 0.00 6.86
828 1159 3.370672 CCCAACTTATCCAAAATTTGCGC 59.629 43.478 0.00 0.00 0.00 6.09
829 1160 4.565022 ACCCAACTTATCCAAAATTTGCG 58.435 39.130 0.00 0.00 0.00 4.85
830 1161 4.625311 CGACCCAACTTATCCAAAATTTGC 59.375 41.667 0.00 0.00 0.00 3.68
831 1162 5.167845 CCGACCCAACTTATCCAAAATTTG 58.832 41.667 0.00 0.00 0.00 2.32
832 1163 4.322424 GCCGACCCAACTTATCCAAAATTT 60.322 41.667 0.00 0.00 0.00 1.82
833 1164 3.194755 GCCGACCCAACTTATCCAAAATT 59.805 43.478 0.00 0.00 0.00 1.82
834 1165 2.758423 GCCGACCCAACTTATCCAAAAT 59.242 45.455 0.00 0.00 0.00 1.82
835 1166 2.164338 GCCGACCCAACTTATCCAAAA 58.836 47.619 0.00 0.00 0.00 2.44
836 1167 1.828979 GCCGACCCAACTTATCCAAA 58.171 50.000 0.00 0.00 0.00 3.28
837 1168 0.391927 CGCCGACCCAACTTATCCAA 60.392 55.000 0.00 0.00 0.00 3.53
838 1169 1.219664 CGCCGACCCAACTTATCCA 59.780 57.895 0.00 0.00 0.00 3.41
839 1170 1.523032 CCGCCGACCCAACTTATCC 60.523 63.158 0.00 0.00 0.00 2.59
840 1171 1.523032 CCCGCCGACCCAACTTATC 60.523 63.158 0.00 0.00 0.00 1.75
841 1172 1.968050 CTCCCGCCGACCCAACTTAT 61.968 60.000 0.00 0.00 0.00 1.73
842 1173 2.604079 TCCCGCCGACCCAACTTA 60.604 61.111 0.00 0.00 0.00 2.24
843 1174 4.016706 CTCCCGCCGACCCAACTT 62.017 66.667 0.00 0.00 0.00 2.66
844 1175 2.866523 TATCTCCCGCCGACCCAACT 62.867 60.000 0.00 0.00 0.00 3.16
845 1176 1.963464 TTATCTCCCGCCGACCCAAC 61.963 60.000 0.00 0.00 0.00 3.77
846 1177 1.052124 ATTATCTCCCGCCGACCCAA 61.052 55.000 0.00 0.00 0.00 4.12
847 1178 1.052124 AATTATCTCCCGCCGACCCA 61.052 55.000 0.00 0.00 0.00 4.51
848 1179 0.108019 AAATTATCTCCCGCCGACCC 59.892 55.000 0.00 0.00 0.00 4.46
849 1180 1.226746 CAAATTATCTCCCGCCGACC 58.773 55.000 0.00 0.00 0.00 4.79
850 1181 1.226746 CCAAATTATCTCCCGCCGAC 58.773 55.000 0.00 0.00 0.00 4.79
851 1182 0.107831 CCCAAATTATCTCCCGCCGA 59.892 55.000 0.00 0.00 0.00 5.54
852 1183 1.515521 GCCCAAATTATCTCCCGCCG 61.516 60.000 0.00 0.00 0.00 6.46
853 1184 1.179174 GGCCCAAATTATCTCCCGCC 61.179 60.000 0.00 0.00 0.00 6.13
854 1185 1.179174 GGGCCCAAATTATCTCCCGC 61.179 60.000 19.95 0.00 0.00 6.13
855 1186 0.184933 TGGGCCCAAATTATCTCCCG 59.815 55.000 26.33 0.00 36.56 5.14
856 1187 2.434336 GTTTGGGCCCAAATTATCTCCC 59.566 50.000 44.24 28.32 45.90 4.30
857 1188 2.434336 GGTTTGGGCCCAAATTATCTCC 59.566 50.000 44.24 35.25 45.90 3.71
858 1189 3.103742 TGGTTTGGGCCCAAATTATCTC 58.896 45.455 44.24 31.59 45.90 2.75
859 1190 2.837591 GTGGTTTGGGCCCAAATTATCT 59.162 45.455 44.24 0.00 45.90 1.98
860 1191 2.418060 CGTGGTTTGGGCCCAAATTATC 60.418 50.000 44.24 32.56 45.90 1.75
861 1192 1.552792 CGTGGTTTGGGCCCAAATTAT 59.447 47.619 44.24 0.00 45.90 1.28
862 1193 0.969894 CGTGGTTTGGGCCCAAATTA 59.030 50.000 44.24 33.69 45.90 1.40
863 1194 1.751563 CGTGGTTTGGGCCCAAATT 59.248 52.632 44.24 0.00 45.90 1.82
864 1195 2.213513 CCGTGGTTTGGGCCCAAAT 61.214 57.895 44.24 0.00 45.90 2.32
865 1196 2.840102 CCGTGGTTTGGGCCCAAA 60.840 61.111 40.46 40.46 42.77 3.28
866 1197 4.924187 CCCGTGGTTTGGGCCCAA 62.924 66.667 34.07 34.07 40.47 4.12
872 1203 3.507377 AAGGAGGCCCGTGGTTTGG 62.507 63.158 0.00 0.00 37.58 3.28
873 1204 2.115266 AAGGAGGCCCGTGGTTTG 59.885 61.111 0.00 0.00 37.58 2.93
874 1205 2.115266 CAAGGAGGCCCGTGGTTT 59.885 61.111 0.00 0.00 38.13 3.27
875 1206 4.660938 GCAAGGAGGCCCGTGGTT 62.661 66.667 0.00 0.00 41.44 3.67
877 1208 4.351054 AAGCAAGGAGGCCCGTGG 62.351 66.667 0.00 0.00 41.44 4.94
878 1209 3.058160 CAAGCAAGGAGGCCCGTG 61.058 66.667 0.00 0.00 43.56 4.94
879 1210 3.249189 TCAAGCAAGGAGGCCCGT 61.249 61.111 0.00 0.00 37.58 5.28
880 1211 2.437359 CTCAAGCAAGGAGGCCCG 60.437 66.667 0.00 0.00 37.58 6.13
881 1212 1.377856 GACTCAAGCAAGGAGGCCC 60.378 63.158 0.00 0.00 34.18 5.80
882 1213 1.743252 CGACTCAAGCAAGGAGGCC 60.743 63.158 0.00 0.00 37.08 5.19
883 1214 1.743252 CCGACTCAAGCAAGGAGGC 60.743 63.158 4.63 0.40 37.04 4.70
884 1215 0.390472 GTCCGACTCAAGCAAGGAGG 60.390 60.000 4.63 0.00 36.70 4.30
885 1216 0.390472 GGTCCGACTCAAGCAAGGAG 60.390 60.000 0.00 0.00 38.36 3.69
886 1217 1.671742 GGTCCGACTCAAGCAAGGA 59.328 57.895 0.00 0.00 0.00 3.36
887 1218 1.376037 GGGTCCGACTCAAGCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
888 1219 1.738099 CGGGTCCGACTCAAGCAAG 60.738 63.158 2.83 0.00 42.83 4.01
889 1220 2.342279 CGGGTCCGACTCAAGCAA 59.658 61.111 2.83 0.00 42.83 3.91
890 1221 4.373116 GCGGGTCCGACTCAAGCA 62.373 66.667 14.15 0.00 42.83 3.91
891 1222 2.221906 TTAGCGGGTCCGACTCAAGC 62.222 60.000 14.15 0.00 42.83 4.01
892 1223 0.245539 TTTAGCGGGTCCGACTCAAG 59.754 55.000 14.15 0.00 42.83 3.02
893 1224 0.680618 TTTTAGCGGGTCCGACTCAA 59.319 50.000 14.15 5.21 42.83 3.02
894 1225 0.899720 ATTTTAGCGGGTCCGACTCA 59.100 50.000 14.15 0.00 42.83 3.41
895 1226 1.568606 GATTTTAGCGGGTCCGACTC 58.431 55.000 14.15 0.00 42.83 3.36
896 1227 0.179119 CGATTTTAGCGGGTCCGACT 60.179 55.000 14.15 11.77 42.83 4.18
897 1228 1.759293 GCGATTTTAGCGGGTCCGAC 61.759 60.000 14.15 4.76 42.83 4.79
898 1229 1.519898 GCGATTTTAGCGGGTCCGA 60.520 57.895 14.15 0.00 42.83 4.55
899 1230 2.531376 GGCGATTTTAGCGGGTCCG 61.531 63.158 4.85 4.85 43.09 4.79
900 1231 2.184830 GGGCGATTTTAGCGGGTCC 61.185 63.158 0.00 0.00 35.00 4.46
901 1232 2.531376 CGGGCGATTTTAGCGGGTC 61.531 63.158 0.00 0.00 35.00 4.46
902 1233 2.512974 CGGGCGATTTTAGCGGGT 60.513 61.111 0.00 0.00 35.00 5.28
903 1234 2.512974 ACGGGCGATTTTAGCGGG 60.513 61.111 0.00 0.00 35.00 6.13
904 1235 2.531376 GGACGGGCGATTTTAGCGG 61.531 63.158 0.00 0.00 35.00 5.52
905 1236 2.531376 GGGACGGGCGATTTTAGCG 61.531 63.158 0.00 0.00 35.00 4.26
906 1237 1.450669 TGGGACGGGCGATTTTAGC 60.451 57.895 0.00 0.00 0.00 3.09
907 1238 0.107848 AGTGGGACGGGCGATTTTAG 60.108 55.000 0.00 0.00 0.00 1.85
908 1239 0.391927 CAGTGGGACGGGCGATTTTA 60.392 55.000 0.00 0.00 0.00 1.52
909 1240 1.674322 CAGTGGGACGGGCGATTTT 60.674 57.895 0.00 0.00 0.00 1.82
910 1241 2.046314 CAGTGGGACGGGCGATTT 60.046 61.111 0.00 0.00 0.00 2.17
911 1242 2.589157 TTCAGTGGGACGGGCGATT 61.589 57.895 0.00 0.00 0.00 3.34
912 1243 3.000819 TTCAGTGGGACGGGCGAT 61.001 61.111 0.00 0.00 0.00 4.58
913 1244 3.998672 GTTCAGTGGGACGGGCGA 61.999 66.667 0.00 0.00 0.00 5.54
915 1246 4.717313 GGGTTCAGTGGGACGGGC 62.717 72.222 0.00 0.00 0.00 6.13
916 1247 1.611261 TAGGGTTCAGTGGGACGGG 60.611 63.158 0.00 0.00 0.00 5.28
917 1248 1.595357 GTAGGGTTCAGTGGGACGG 59.405 63.158 0.00 0.00 0.00 4.79
918 1249 1.189524 TGGTAGGGTTCAGTGGGACG 61.190 60.000 0.00 0.00 0.00 4.79
919 1250 0.613777 CTGGTAGGGTTCAGTGGGAC 59.386 60.000 0.00 0.00 0.00 4.46
920 1251 0.192566 ACTGGTAGGGTTCAGTGGGA 59.807 55.000 0.00 0.00 42.00 4.37
921 1252 0.613777 GACTGGTAGGGTTCAGTGGG 59.386 60.000 0.42 0.00 43.41 4.61
922 1253 0.246635 CGACTGGTAGGGTTCAGTGG 59.753 60.000 0.42 0.00 43.41 4.00
923 1254 0.389948 GCGACTGGTAGGGTTCAGTG 60.390 60.000 0.42 0.00 43.41 3.66
924 1255 0.542232 AGCGACTGGTAGGGTTCAGT 60.542 55.000 0.00 0.00 45.70 3.41
925 1256 0.173708 GAGCGACTGGTAGGGTTCAG 59.826 60.000 0.00 0.00 37.07 3.02
926 1257 1.592400 CGAGCGACTGGTAGGGTTCA 61.592 60.000 0.00 0.00 0.00 3.18
927 1258 1.139095 CGAGCGACTGGTAGGGTTC 59.861 63.158 0.00 0.00 0.00 3.62
928 1259 3.003113 GCGAGCGACTGGTAGGGTT 62.003 63.158 0.00 0.00 0.00 4.11
929 1260 3.450115 GCGAGCGACTGGTAGGGT 61.450 66.667 0.00 0.00 0.00 4.34
930 1261 3.141488 AGCGAGCGACTGGTAGGG 61.141 66.667 0.00 0.00 0.00 3.53
931 1262 2.103143 CAGCGAGCGACTGGTAGG 59.897 66.667 0.00 0.00 0.00 3.18
932 1263 1.226435 GACAGCGAGCGACTGGTAG 60.226 63.158 15.04 0.00 39.55 3.18
933 1264 1.645704 GAGACAGCGAGCGACTGGTA 61.646 60.000 15.04 0.00 39.55 3.25
934 1265 2.983930 GAGACAGCGAGCGACTGGT 61.984 63.158 15.04 5.66 39.55 4.00
935 1266 2.202544 GAGACAGCGAGCGACTGG 60.203 66.667 15.04 0.00 39.55 4.00
936 1267 2.202544 GGAGACAGCGAGCGACTG 60.203 66.667 10.99 10.99 41.08 3.51
937 1268 3.444805 GGGAGACAGCGAGCGACT 61.445 66.667 0.00 0.00 0.00 4.18
938 1269 4.500116 GGGGAGACAGCGAGCGAC 62.500 72.222 0.00 0.00 0.00 5.19
945 1276 4.554036 GATGCCGGGGGAGACAGC 62.554 72.222 2.18 0.00 0.00 4.40
946 1277 4.227134 CGATGCCGGGGGAGACAG 62.227 72.222 2.18 0.00 0.00 3.51
947 1278 4.770362 TCGATGCCGGGGGAGACA 62.770 66.667 2.18 0.00 36.24 3.41
948 1279 3.917760 CTCGATGCCGGGGGAGAC 61.918 72.222 2.18 0.00 36.24 3.36
998 1329 4.530857 GGGTCAGGGCGGACATCG 62.531 72.222 9.66 0.00 39.59 3.84
999 1330 4.176752 GGGGTCAGGGCGGACATC 62.177 72.222 9.66 2.34 39.59 3.06
1002 1333 4.176752 GATGGGGTCAGGGCGGAC 62.177 72.222 0.00 0.00 37.06 4.79
1005 1336 3.521529 GATCGATGGGGTCAGGGCG 62.522 68.421 0.54 0.00 0.00 6.13
1006 1337 2.427753 GATCGATGGGGTCAGGGC 59.572 66.667 0.54 0.00 0.00 5.19
1007 1338 1.460305 AGGATCGATGGGGTCAGGG 60.460 63.158 0.54 0.00 0.00 4.45
1008 1339 1.476007 GGAGGATCGATGGGGTCAGG 61.476 65.000 0.54 0.00 34.37 3.86
1009 1340 1.476007 GGGAGGATCGATGGGGTCAG 61.476 65.000 0.54 0.00 34.37 3.51
1010 1341 1.459539 GGGAGGATCGATGGGGTCA 60.460 63.158 0.54 0.00 34.37 4.02
1011 1342 2.217745 GGGGAGGATCGATGGGGTC 61.218 68.421 0.54 0.00 34.37 4.46
1012 1343 2.122369 GGGGAGGATCGATGGGGT 60.122 66.667 0.54 0.00 34.37 4.95
1013 1344 2.930562 GGGGGAGGATCGATGGGG 60.931 72.222 0.54 0.00 34.37 4.96
1014 1345 3.314331 CGGGGGAGGATCGATGGG 61.314 72.222 0.54 0.00 34.37 4.00
1015 1346 4.008933 GCGGGGGAGGATCGATGG 62.009 72.222 0.54 0.00 34.37 3.51
1016 1347 4.363990 CGCGGGGGAGGATCGATG 62.364 72.222 0.54 0.00 34.37 3.84
1038 1369 2.995574 AAGACGGGGTCGGGACAG 60.996 66.667 0.75 0.00 41.39 3.51
1039 1370 2.993264 GAAGACGGGGTCGGGACA 60.993 66.667 0.75 0.00 41.39 4.02
1040 1371 3.767806 GGAAGACGGGGTCGGGAC 61.768 72.222 0.00 0.00 41.39 4.46
1049 1380 3.976701 ATTGCTGCGGGGAAGACGG 62.977 63.158 0.00 0.00 0.00 4.79
1050 1381 2.436646 ATTGCTGCGGGGAAGACG 60.437 61.111 0.00 0.00 0.00 4.18
1051 1382 2.409870 CCATTGCTGCGGGGAAGAC 61.410 63.158 0.00 0.00 0.00 3.01
1052 1383 2.045045 CCATTGCTGCGGGGAAGA 60.045 61.111 0.00 0.00 0.00 2.87
1053 1384 3.830192 GCCATTGCTGCGGGGAAG 61.830 66.667 8.04 0.00 33.53 3.46
1095 1426 4.452733 GACTCAGGTTCCGCCGGG 62.453 72.222 1.90 0.00 43.70 5.73
1096 1427 4.452733 GGACTCAGGTTCCGCCGG 62.453 72.222 0.00 0.00 43.70 6.13
1097 1428 3.691342 TGGACTCAGGTTCCGCCG 61.691 66.667 0.00 0.00 43.70 6.46
1098 1429 2.047179 GTGGACTCAGGTTCCGCC 60.047 66.667 0.00 0.00 37.58 6.13
1099 1430 2.047179 GGTGGACTCAGGTTCCGC 60.047 66.667 0.00 0.00 0.00 5.54
1100 1431 1.004918 GTGGTGGACTCAGGTTCCG 60.005 63.158 0.00 0.00 0.00 4.30
1101 1432 0.472471 TTGTGGTGGACTCAGGTTCC 59.528 55.000 0.00 0.00 0.00 3.62
1102 1433 1.594331 GTTGTGGTGGACTCAGGTTC 58.406 55.000 0.00 0.00 0.00 3.62
1103 1434 0.182775 GGTTGTGGTGGACTCAGGTT 59.817 55.000 0.00 0.00 0.00 3.50
1104 1435 0.986019 TGGTTGTGGTGGACTCAGGT 60.986 55.000 0.00 0.00 0.00 4.00
1105 1436 0.535102 GTGGTTGTGGTGGACTCAGG 60.535 60.000 0.00 0.00 0.00 3.86
1106 1437 0.535102 GGTGGTTGTGGTGGACTCAG 60.535 60.000 0.00 0.00 0.00 3.35
1107 1438 1.275421 TGGTGGTTGTGGTGGACTCA 61.275 55.000 0.00 0.00 0.00 3.41
1108 1439 0.818040 GTGGTGGTTGTGGTGGACTC 60.818 60.000 0.00 0.00 0.00 3.36
1109 1440 1.226262 GTGGTGGTTGTGGTGGACT 59.774 57.895 0.00 0.00 0.00 3.85
1110 1441 1.826487 GGTGGTGGTTGTGGTGGAC 60.826 63.158 0.00 0.00 0.00 4.02
1114 1445 1.000646 AAACGGTGGTGGTTGTGGT 60.001 52.632 0.00 0.00 0.00 4.16
1131 1462 1.677552 GTCTTTGCCGAGGGAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
1144 1475 1.205893 GATGTCGAGGAGCAGGTCTTT 59.794 52.381 0.00 0.00 0.00 2.52
1239 1571 3.459063 CGGAAGGACGGGGAGGAC 61.459 72.222 0.00 0.00 0.00 3.85
1322 1654 2.124695 GGACGAAGGTGGGGATGC 60.125 66.667 0.00 0.00 0.00 3.91
1466 1798 2.203126 GCGCATTCCAGAGGAGGG 60.203 66.667 0.30 0.00 31.21 4.30
1512 1853 3.458163 TCGACGGCCCAGGTCATC 61.458 66.667 9.55 0.00 34.04 2.92
1550 1891 1.511305 GTCTCCGCCATGAAGTCGA 59.489 57.895 0.00 0.00 0.00 4.20
1596 1958 0.748729 AGGGCTTCTCGTCGGAGTAG 60.749 60.000 0.00 0.00 41.26 2.57
1598 1960 2.035940 AGGGCTTCTCGTCGGAGT 59.964 61.111 0.00 0.00 41.26 3.85
1623 1985 2.125952 CAGATGCAGACCACGCGA 60.126 61.111 15.93 0.00 0.00 5.87
1683 2047 1.379843 GATGGCCCAATCCCACGTT 60.380 57.895 0.00 0.00 34.68 3.99
1742 2112 1.151668 CACCAGTGTGCTAGTCTTGC 58.848 55.000 0.00 0.00 35.31 4.01
1755 2125 3.394606 AGTAAACAGAATCACCCACCAGT 59.605 43.478 0.00 0.00 0.00 4.00
1799 2175 1.686587 TGGCGTCGATCCTTATCATGT 59.313 47.619 0.00 0.00 31.93 3.21
1818 2197 0.036483 TGGTGACATCCATGGTCGTG 60.036 55.000 12.58 11.79 38.10 4.35
1909 6609 5.756833 CAGCAGATACATGAGCAATACAGAA 59.243 40.000 0.00 0.00 0.00 3.02
1925 6625 3.645212 CTGGAGGAGGAAATCAGCAGATA 59.355 47.826 0.00 0.00 33.08 1.98
1962 6669 1.134128 TGAATCCCATCACCATCCACG 60.134 52.381 0.00 0.00 0.00 4.94
2020 6731 2.791560 CCTCAGTAATGCGATCGACTTG 59.208 50.000 21.57 8.14 0.00 3.16
2023 6734 1.772182 CCCTCAGTAATGCGATCGAC 58.228 55.000 21.57 10.98 0.00 4.20
2084 6816 6.662414 TCATTGTTCTTGATAAGTAAGCGG 57.338 37.500 0.00 0.00 0.00 5.52
2099 6831 3.019564 CCAGAAGGGGTCATCATTGTTC 58.980 50.000 0.00 0.00 0.00 3.18
2122 6857 3.815401 GAGAAAAACCAGCAGCAGAGTAA 59.185 43.478 0.00 0.00 0.00 2.24
2150 6885 2.169352 TCAAGCTCCATAGTCTCCAAGC 59.831 50.000 0.00 0.00 0.00 4.01
2250 6985 2.576615 GAACCTTCAAGTTCAGGTGCT 58.423 47.619 4.31 0.00 43.05 4.40
2252 6987 1.873591 CCGAACCTTCAAGTTCAGGTG 59.126 52.381 4.31 0.00 45.27 4.00
2272 7007 3.403038 ACCAACTGCATACACTTCACTC 58.597 45.455 0.00 0.00 0.00 3.51
2274 7009 3.853307 GCAACCAACTGCATACACTTCAC 60.853 47.826 0.00 0.00 42.17 3.18
2289 7024 2.048033 ATACGCGACGGCAACCAA 60.048 55.556 15.93 0.00 39.92 3.67
2293 7028 0.388778 TTCTTCATACGCGACGGCAA 60.389 50.000 15.93 0.00 39.92 4.52
2298 7033 3.369756 TCAACCATTTCTTCATACGCGAC 59.630 43.478 15.93 0.00 0.00 5.19
2309 7044 3.255642 CCCACGAATTGTCAACCATTTCT 59.744 43.478 0.00 0.00 33.32 2.52
2316 7051 4.634004 TCATCATACCCACGAATTGTCAAC 59.366 41.667 0.00 0.00 0.00 3.18
2317 7052 4.837972 TCATCATACCCACGAATTGTCAA 58.162 39.130 0.00 0.00 0.00 3.18
2352 7087 4.685169 ATGCGACTCCAAAGTACATTTG 57.315 40.909 0.00 3.45 46.62 2.32
2353 7088 6.811253 TTTATGCGACTCCAAAGTACATTT 57.189 33.333 0.00 0.00 35.28 2.32
2354 7089 6.430000 AGTTTTATGCGACTCCAAAGTACATT 59.570 34.615 0.00 0.00 35.28 2.71
2355 7090 5.938125 AGTTTTATGCGACTCCAAAGTACAT 59.062 36.000 0.00 0.00 35.28 2.29
2356 7091 5.302360 AGTTTTATGCGACTCCAAAGTACA 58.698 37.500 0.00 0.00 35.28 2.90
2357 7092 5.857822 AGTTTTATGCGACTCCAAAGTAC 57.142 39.130 0.00 0.00 35.28 2.73
2368 7103 4.039245 AGCCAGCTAGATAGTTTTATGCGA 59.961 41.667 0.00 0.00 0.00 5.10
2369 7104 4.310769 AGCCAGCTAGATAGTTTTATGCG 58.689 43.478 0.00 0.00 0.00 4.73
2374 7109 7.524717 TTTTCAAAGCCAGCTAGATAGTTTT 57.475 32.000 0.00 0.00 0.00 2.43
2376 7111 7.709149 AATTTTCAAAGCCAGCTAGATAGTT 57.291 32.000 0.00 0.00 0.00 2.24
2378 7113 7.765307 TCAAATTTTCAAAGCCAGCTAGATAG 58.235 34.615 0.00 0.00 0.00 2.08
2386 7121 5.811613 TGTTGTCTCAAATTTTCAAAGCCAG 59.188 36.000 0.00 0.00 0.00 4.85
2401 7136 9.730705 AATGAAGATAGAAGAAATGTTGTCTCA 57.269 29.630 0.00 0.00 0.00 3.27
2404 7139 9.985318 CTGAATGAAGATAGAAGAAATGTTGTC 57.015 33.333 0.00 0.00 0.00 3.18
2406 7141 9.770503 CACTGAATGAAGATAGAAGAAATGTTG 57.229 33.333 0.00 0.00 0.00 3.33
2426 7161 9.599866 CTCTATGTGAATAACCATTACACTGAA 57.400 33.333 0.00 0.00 33.41 3.02
2428 7163 9.770097 ATCTCTATGTGAATAACCATTACACTG 57.230 33.333 0.00 0.00 33.41 3.66
2429 7164 9.770097 CATCTCTATGTGAATAACCATTACACT 57.230 33.333 0.00 0.00 33.41 3.55
2430 7165 9.547753 ACATCTCTATGTGAATAACCATTACAC 57.452 33.333 0.00 0.00 44.79 2.90
2435 7170 8.274322 TCCAAACATCTCTATGTGAATAACCAT 58.726 33.333 0.00 0.00 45.79 3.55
2436 7171 7.629157 TCCAAACATCTCTATGTGAATAACCA 58.371 34.615 0.00 0.00 45.79 3.67
2437 7172 8.562892 CATCCAAACATCTCTATGTGAATAACC 58.437 37.037 0.00 0.00 45.79 2.85
2441 7181 6.124340 TGCATCCAAACATCTCTATGTGAAT 58.876 36.000 0.00 0.00 45.79 2.57
2447 7187 7.649533 TTTCAATGCATCCAAACATCTCTAT 57.350 32.000 0.00 0.00 0.00 1.98
2455 7195 6.093771 TGCCAATAATTTCAATGCATCCAAAC 59.906 34.615 0.00 0.00 0.00 2.93
2458 7198 5.117584 GTGCCAATAATTTCAATGCATCCA 58.882 37.500 0.00 0.00 0.00 3.41
2461 7201 5.008619 TCGTGCCAATAATTTCAATGCAT 57.991 34.783 0.00 0.00 0.00 3.96
2463 7203 4.318263 GCATCGTGCCAATAATTTCAATGC 60.318 41.667 0.00 0.00 37.42 3.56
2464 7204 5.045215 AGCATCGTGCCAATAATTTCAATG 58.955 37.500 6.39 0.00 46.52 2.82
2472 7212 1.742831 GTTCCAGCATCGTGCCAATAA 59.257 47.619 6.39 0.00 46.52 1.40
2473 7213 1.065491 AGTTCCAGCATCGTGCCAATA 60.065 47.619 6.39 0.00 46.52 1.90
2479 7219 5.109210 TGACTAATTAGTTCCAGCATCGTG 58.891 41.667 18.96 0.00 36.50 4.35
2483 7223 5.380043 CCCATGACTAATTAGTTCCAGCAT 58.620 41.667 18.96 13.72 36.50 3.79
2491 7231 5.189145 ACGACTTTCCCCATGACTAATTAGT 59.811 40.000 18.05 18.05 39.71 2.24
2497 7237 1.475280 CGACGACTTTCCCCATGACTA 59.525 52.381 0.00 0.00 0.00 2.59
2524 7264 2.197324 TGGAAGGCGCAGGGTTTT 59.803 55.556 10.83 0.00 0.00 2.43
2542 7286 3.133003 TCCTCGGGCTTCTTAGAAATCTG 59.867 47.826 0.00 0.00 0.00 2.90
2569 7313 2.514824 GGCTAAGGGGCGCTGAAG 60.515 66.667 7.64 7.32 0.00 3.02
2654 7398 1.610038 TGTGCAGTTTGAAGGATGCTG 59.390 47.619 0.00 0.00 39.42 4.41
2656 7400 2.294233 TCTTGTGCAGTTTGAAGGATGC 59.706 45.455 0.00 0.00 39.14 3.91
2695 7457 6.428159 CCAAATAGACAGTTTGTAGAGCAGTT 59.572 38.462 0.00 0.00 35.35 3.16
2724 7488 4.985409 GTCTCGATGACTTGAAACTTGTCT 59.015 41.667 7.50 0.00 42.21 3.41
2727 7491 4.507756 TGTGTCTCGATGACTTGAAACTTG 59.492 41.667 13.65 0.00 45.54 3.16
2728 7492 4.693283 TGTGTCTCGATGACTTGAAACTT 58.307 39.130 13.65 0.00 45.54 2.66
2746 7510 2.100749 TCACGTGTTCTCAGTGATGTGT 59.899 45.455 16.51 0.00 39.63 3.72
2779 7543 6.365520 AGTCTTGAAGATTGGTTAACACCTT 58.634 36.000 8.10 4.56 44.61 3.50
2837 7602 1.514678 GATGTTGTCGCAAGGGCACA 61.515 55.000 0.00 0.00 41.24 4.57
2839 7604 0.821301 TTGATGTTGTCGCAAGGGCA 60.821 50.000 0.00 0.00 41.24 5.36
2840 7605 0.313672 TTTGATGTTGTCGCAAGGGC 59.686 50.000 0.00 0.00 38.47 5.19
2847 7612 2.217750 TGGGTCAGTTTGATGTTGTCG 58.782 47.619 0.00 0.00 0.00 4.35
2877 7654 4.991687 GCATACTTCATCTAGTAGTTGCCC 59.008 45.833 3.68 0.00 34.32 5.36
2958 7735 1.942657 CATAAGATGGTGGCTTCCGTG 59.057 52.381 0.00 0.00 0.00 4.94
2961 7738 3.209410 CAGTCATAAGATGGTGGCTTCC 58.791 50.000 0.00 0.00 0.00 3.46
3000 7783 2.211250 ATTGCTCAATGTCTGCCACT 57.789 45.000 0.00 0.00 0.00 4.00
3102 7888 1.936547 GCAGATGATTTCCTCGGTGAC 59.063 52.381 0.00 0.00 0.00 3.67
3193 7979 2.012673 GCAACTCTCTGGCGATGATTT 58.987 47.619 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.