Multiple sequence alignment - TraesCS4A01G008500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G008500 chr4A 100.000 3057 0 0 1 3057 5121228 5124284 0.000000e+00 5646
1 TraesCS4A01G008500 chr4A 86.260 655 48 24 1448 2095 5200249 5200868 0.000000e+00 673
2 TraesCS4A01G008500 chr4A 91.837 392 32 0 1001 1392 5193110 5193501 5.760000e-152 547
3 TraesCS4A01G008500 chr4A 93.145 248 14 3 2519 2766 599760149 599760393 8.060000e-96 361
4 TraesCS4A01G008500 chr4D 90.248 1692 94 30 721 2389 465352297 465350654 0.000000e+00 2145
5 TraesCS4A01G008500 chr4D 87.922 563 46 16 1497 2055 465161437 465160893 0.000000e+00 643
6 TraesCS4A01G008500 chr4D 90.444 450 15 11 2086 2519 465182962 465182525 4.420000e-158 568
7 TraesCS4A01G008500 chr4D 93.005 386 27 0 1007 1392 465185724 465185339 5.720000e-157 564
8 TraesCS4A01G008500 chr4D 86.720 497 44 16 1561 2053 465157833 465157355 1.610000e-147 532
9 TraesCS4A01G008500 chr4D 90.933 386 35 0 1007 1392 465161965 465161580 1.260000e-143 520
10 TraesCS4A01G008500 chr4D 93.493 292 19 0 1768 2059 465183709 465183418 4.680000e-118 435
11 TraesCS4A01G008500 chr4D 93.836 146 9 0 2767 2912 483167253 483167108 1.430000e-53 220
12 TraesCS4A01G008500 chr4B 87.289 1007 67 20 1454 2447 582023189 582022231 0.000000e+00 1094
13 TraesCS4A01G008500 chr4B 90.393 687 45 14 721 1396 582023970 582023294 0.000000e+00 883
14 TraesCS4A01G008500 chr4B 89.426 331 30 5 1767 2095 581951010 581950683 2.190000e-111 412
15 TraesCS4A01G008500 chr4B 92.430 251 15 4 2519 2768 665571043 665571290 3.750000e-94 355
16 TraesCS4A01G008500 chr4B 87.770 139 11 2 2919 3057 582022190 582022058 1.130000e-34 158
17 TraesCS4A01G008500 chr7A 93.393 666 41 3 1 666 700487703 700488365 0.000000e+00 983
18 TraesCS4A01G008500 chr7A 92.504 667 45 5 1 666 133601523 133602185 0.000000e+00 950
19 TraesCS4A01G008500 chr7A 92.829 251 15 3 2519 2768 536969331 536969579 8.060000e-96 361
20 TraesCS4A01G008500 chr2A 92.985 670 44 3 1 670 733790884 733790218 0.000000e+00 974
21 TraesCS4A01G008500 chr2A 92.793 666 46 2 1 666 471781372 471780709 0.000000e+00 963
22 TraesCS4A01G008500 chr2A 91.700 253 20 1 2519 2771 746618808 746618557 1.740000e-92 350
23 TraesCS4A01G008500 chr3A 93.558 652 40 2 15 666 691659291 691659940 0.000000e+00 970
24 TraesCS4A01G008500 chr3A 92.954 667 43 4 1 666 116080093 116079430 0.000000e+00 968
25 TraesCS4A01G008500 chr3A 84.748 695 75 22 937 1616 569890788 569891466 0.000000e+00 667
26 TraesCS4A01G008500 chr3A 86.785 507 53 11 888 1392 570113937 570114431 1.240000e-153 553
27 TraesCS4A01G008500 chr3A 86.441 177 21 2 1469 1644 570114583 570114757 1.120000e-44 191
28 TraesCS4A01G008500 chr6A 92.793 666 46 2 1 666 309820323 309819660 0.000000e+00 963
29 TraesCS4A01G008500 chr6A 92.738 661 46 2 1 661 85006388 85007046 0.000000e+00 953
30 TraesCS4A01G008500 chr6A 88.820 161 14 3 1457 1616 166114869 166115026 8.650000e-46 195
31 TraesCS4A01G008500 chr5A 92.793 666 46 2 1 666 158320404 158321067 0.000000e+00 963
32 TraesCS4A01G008500 chr5A 93.625 251 14 2 2519 2768 633276012 633276261 1.030000e-99 374
33 TraesCS4A01G008500 chr5A 93.151 146 9 1 2767 2912 552361383 552361527 2.390000e-51 213
34 TraesCS4A01G008500 chr3B 84.375 672 76 21 962 1616 564759106 564759765 1.550000e-177 632
35 TraesCS4A01G008500 chr3B 85.680 412 41 12 1742 2153 564759828 564760221 4.710000e-113 418
36 TraesCS4A01G008500 chr3D 90.698 430 34 3 962 1391 432513121 432513544 4.420000e-158 568
37 TraesCS4A01G008500 chr3D 89.274 317 33 1 1742 2058 432513833 432514148 2.210000e-106 396
38 TraesCS4A01G008500 chr3D 92.466 146 11 0 2767 2912 592617908 592618053 3.090000e-50 209
39 TraesCS4A01G008500 chr3D 90.345 145 14 0 1472 1616 432513641 432513785 1.120000e-44 191
40 TraesCS4A01G008500 chr5D 93.878 245 13 2 2528 2771 481941671 481941428 4.820000e-98 368
41 TraesCS4A01G008500 chr5D 92.400 250 16 3 2519 2768 453127036 453127282 1.350000e-93 353
42 TraesCS4A01G008500 chr5D 91.781 146 12 0 2767 2912 453126909 453127054 1.440000e-48 204
43 TraesCS4A01G008500 chr7D 91.797 256 17 3 2519 2771 631906416 631906162 1.350000e-93 353
44 TraesCS4A01G008500 chr7D 92.623 244 15 2 2528 2771 29683498 29683258 6.270000e-92 348
45 TraesCS4A01G008500 chr7D 93.151 146 9 1 2767 2912 29683633 29683489 2.390000e-51 213
46 TraesCS4A01G008500 chr7D 91.781 146 12 0 2767 2912 495328821 495328676 1.440000e-48 204
47 TraesCS4A01G008500 chr6D 91.781 146 12 0 2767 2912 11715945 11716090 1.440000e-48 204
48 TraesCS4A01G008500 chr6D 91.781 146 11 1 2767 2912 205127485 205127341 5.170000e-48 202
49 TraesCS4A01G008500 chr2B 91.781 146 12 0 2767 2912 761246340 761246195 1.440000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G008500 chr4A 5121228 5124284 3056 False 5646.000000 5646 100.000000 1 3057 1 chr4A.!!$F1 3056
1 TraesCS4A01G008500 chr4A 5200249 5200868 619 False 673.000000 673 86.260000 1448 2095 1 chr4A.!!$F3 647
2 TraesCS4A01G008500 chr4D 465350654 465352297 1643 True 2145.000000 2145 90.248000 721 2389 1 chr4D.!!$R1 1668
3 TraesCS4A01G008500 chr4D 465157355 465161965 4610 True 565.000000 643 88.525000 1007 2055 3 chr4D.!!$R3 1048
4 TraesCS4A01G008500 chr4D 465182525 465185724 3199 True 522.333333 568 92.314000 1007 2519 3 chr4D.!!$R4 1512
5 TraesCS4A01G008500 chr4B 582022058 582023970 1912 True 711.666667 1094 88.484000 721 3057 3 chr4B.!!$R2 2336
6 TraesCS4A01G008500 chr7A 700487703 700488365 662 False 983.000000 983 93.393000 1 666 1 chr7A.!!$F3 665
7 TraesCS4A01G008500 chr7A 133601523 133602185 662 False 950.000000 950 92.504000 1 666 1 chr7A.!!$F1 665
8 TraesCS4A01G008500 chr2A 733790218 733790884 666 True 974.000000 974 92.985000 1 670 1 chr2A.!!$R2 669
9 TraesCS4A01G008500 chr2A 471780709 471781372 663 True 963.000000 963 92.793000 1 666 1 chr2A.!!$R1 665
10 TraesCS4A01G008500 chr3A 691659291 691659940 649 False 970.000000 970 93.558000 15 666 1 chr3A.!!$F2 651
11 TraesCS4A01G008500 chr3A 116079430 116080093 663 True 968.000000 968 92.954000 1 666 1 chr3A.!!$R1 665
12 TraesCS4A01G008500 chr3A 569890788 569891466 678 False 667.000000 667 84.748000 937 1616 1 chr3A.!!$F1 679
13 TraesCS4A01G008500 chr3A 570113937 570114757 820 False 372.000000 553 86.613000 888 1644 2 chr3A.!!$F3 756
14 TraesCS4A01G008500 chr6A 309819660 309820323 663 True 963.000000 963 92.793000 1 666 1 chr6A.!!$R1 665
15 TraesCS4A01G008500 chr6A 85006388 85007046 658 False 953.000000 953 92.738000 1 661 1 chr6A.!!$F1 660
16 TraesCS4A01G008500 chr5A 158320404 158321067 663 False 963.000000 963 92.793000 1 666 1 chr5A.!!$F1 665
17 TraesCS4A01G008500 chr3B 564759106 564760221 1115 False 525.000000 632 85.027500 962 2153 2 chr3B.!!$F1 1191
18 TraesCS4A01G008500 chr3D 432513121 432514148 1027 False 385.000000 568 90.105667 962 2058 3 chr3D.!!$F2 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 691 0.179189 GGCGCGAGAAAATTGTCTGG 60.179 55.0 12.1 2.7 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 7890 0.179 CCATTTCCCCCGTCTCTCTG 59.821 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.438360 GATGAAGTAATTTGGCTTGGCG 58.562 45.455 0.00 0.00 0.00 5.69
85 87 3.695606 GTCGCTGAGCCTCCACCA 61.696 66.667 0.00 0.00 0.00 4.17
450 452 4.442893 CGTGAGGAATCAATGGTAAGGCTA 60.443 45.833 0.00 0.00 0.00 3.93
681 686 2.576847 GCCGGCGCGAGAAAATTG 60.577 61.111 12.58 0.00 0.00 2.32
682 687 2.867472 CCGGCGCGAGAAAATTGT 59.133 55.556 12.10 0.00 0.00 2.71
683 688 1.226018 CCGGCGCGAGAAAATTGTC 60.226 57.895 12.10 0.00 0.00 3.18
684 689 1.635663 CCGGCGCGAGAAAATTGTCT 61.636 55.000 12.10 0.00 0.00 3.41
685 690 0.519175 CGGCGCGAGAAAATTGTCTG 60.519 55.000 12.10 0.00 0.00 3.51
686 691 0.179189 GGCGCGAGAAAATTGTCTGG 60.179 55.000 12.10 2.70 0.00 3.86
687 692 0.179189 GCGCGAGAAAATTGTCTGGG 60.179 55.000 12.10 5.48 0.00 4.45
688 693 0.447801 CGCGAGAAAATTGTCTGGGG 59.552 55.000 1.85 6.59 31.73 4.96
689 694 1.821216 GCGAGAAAATTGTCTGGGGA 58.179 50.000 1.85 0.00 0.00 4.81
690 695 1.740025 GCGAGAAAATTGTCTGGGGAG 59.260 52.381 1.85 0.00 0.00 4.30
691 696 2.359900 CGAGAAAATTGTCTGGGGAGG 58.640 52.381 1.85 0.00 0.00 4.30
692 697 2.095461 GAGAAAATTGTCTGGGGAGGC 58.905 52.381 1.85 0.00 0.00 4.70
693 698 1.186200 GAAAATTGTCTGGGGAGGCC 58.814 55.000 0.00 0.00 0.00 5.19
694 699 0.786435 AAAATTGTCTGGGGAGGCCT 59.214 50.000 3.86 3.86 0.00 5.19
695 700 0.786435 AAATTGTCTGGGGAGGCCTT 59.214 50.000 6.77 0.00 0.00 4.35
696 701 0.332972 AATTGTCTGGGGAGGCCTTC 59.667 55.000 6.77 3.67 0.00 3.46
697 702 1.575447 ATTGTCTGGGGAGGCCTTCC 61.575 60.000 23.75 23.75 46.00 3.46
699 704 2.285668 TCTGGGGAGGCCTTCCTG 60.286 66.667 30.10 24.00 44.46 3.86
700 705 3.415087 CTGGGGAGGCCTTCCTGG 61.415 72.222 30.10 18.11 44.46 4.45
701 706 4.285790 TGGGGAGGCCTTCCTGGT 62.286 66.667 30.10 0.00 44.46 4.00
702 707 3.732849 GGGGAGGCCTTCCTGGTG 61.733 72.222 30.10 0.00 44.46 4.17
703 708 4.432741 GGGAGGCCTTCCTGGTGC 62.433 72.222 24.53 0.00 44.46 5.01
704 709 4.785453 GGAGGCCTTCCTGGTGCG 62.785 72.222 6.77 0.00 44.46 5.34
710 715 4.077184 CTTCCTGGTGCGCGGGTA 62.077 66.667 8.83 0.00 0.00 3.69
711 716 3.599285 CTTCCTGGTGCGCGGGTAA 62.599 63.158 8.83 0.00 0.00 2.85
712 717 3.179888 TTCCTGGTGCGCGGGTAAA 62.180 57.895 8.83 0.00 0.00 2.01
713 718 3.124921 CCTGGTGCGCGGGTAAAG 61.125 66.667 8.83 0.00 0.00 1.85
714 719 2.047655 CTGGTGCGCGGGTAAAGA 60.048 61.111 8.83 0.00 0.00 2.52
715 720 1.449601 CTGGTGCGCGGGTAAAGAT 60.450 57.895 8.83 0.00 0.00 2.40
716 721 1.705337 CTGGTGCGCGGGTAAAGATG 61.705 60.000 8.83 0.00 0.00 2.90
717 722 2.403586 GTGCGCGGGTAAAGATGC 59.596 61.111 8.83 0.00 0.00 3.91
718 723 2.106683 GTGCGCGGGTAAAGATGCT 61.107 57.895 8.83 0.00 0.00 3.79
719 724 1.813753 TGCGCGGGTAAAGATGCTC 60.814 57.895 8.83 0.00 0.00 4.26
751 756 9.990360 TCAGTGCGTATATTCTTTCCATATAAA 57.010 29.630 0.00 0.00 0.00 1.40
786 791 0.609131 TTTTAGCAGCCCTCCAGTGC 60.609 55.000 0.00 0.00 37.48 4.40
792 797 4.357279 GCCCTCCAGTGCCAGCTT 62.357 66.667 0.00 0.00 0.00 3.74
807 812 3.983344 GCCAGCTTCAACTAAACATGTTG 59.017 43.478 12.82 2.87 44.21 3.33
815 820 6.201226 TCAACTAAACATGTTGACTTTGCA 57.799 33.333 12.82 2.34 45.77 4.08
816 821 6.625362 TCAACTAAACATGTTGACTTTGCAA 58.375 32.000 12.82 0.00 45.77 4.08
818 823 7.763528 TCAACTAAACATGTTGACTTTGCAATT 59.236 29.630 12.82 0.00 45.77 2.32
819 824 8.389603 CAACTAAACATGTTGACTTTGCAATTT 58.610 29.630 12.82 0.00 45.27 1.82
820 825 7.908230 ACTAAACATGTTGACTTTGCAATTTG 58.092 30.769 12.82 0.00 0.00 2.32
821 826 4.799419 ACATGTTGACTTTGCAATTTGC 57.201 36.364 14.49 14.49 45.29 3.68
870 886 5.100943 CGTGATTCTGCTGATCGATGATAT 58.899 41.667 0.54 0.00 0.00 1.63
876 892 5.058490 TCTGCTGATCGATGATATTTTGCA 58.942 37.500 0.54 0.00 0.00 4.08
877 893 5.704053 TCTGCTGATCGATGATATTTTGCAT 59.296 36.000 0.54 0.00 0.00 3.96
878 894 5.695818 TGCTGATCGATGATATTTTGCATG 58.304 37.500 0.54 0.00 0.00 4.06
879 895 4.557690 GCTGATCGATGATATTTTGCATGC 59.442 41.667 11.82 11.82 0.00 4.06
923 945 3.604772 GCTTCATAAATCTAACAGCGCCG 60.605 47.826 2.29 0.00 0.00 6.46
925 947 1.867233 CATAAATCTAACAGCGCCGCT 59.133 47.619 5.39 5.39 40.77 5.52
926 948 1.567504 TAAATCTAACAGCGCCGCTC 58.432 50.000 9.54 0.00 36.40 5.03
928 950 2.279502 AATCTAACAGCGCCGCTCGA 62.280 55.000 9.54 3.81 41.67 4.04
929 951 2.669808 ATCTAACAGCGCCGCTCGAG 62.670 60.000 9.54 8.45 41.67 4.04
947 969 3.157932 GAGGTCTTTGACATCGGAGAG 57.842 52.381 0.07 0.00 43.63 3.20
953 975 0.684535 TTGACATCGGAGAGCCACAA 59.315 50.000 0.00 0.00 43.63 3.33
955 977 0.741221 GACATCGGAGAGCCACAACC 60.741 60.000 0.00 0.00 43.63 3.77
991 1021 1.135333 GAAACAGTCGCAAAACCCCAA 59.865 47.619 0.00 0.00 0.00 4.12
1058 1088 1.069090 ACATCGTTCTGGTGCACGT 59.931 52.632 11.45 0.00 37.66 4.49
1357 1387 2.438434 CCTTCATGCCGGACCACC 60.438 66.667 5.05 0.00 0.00 4.61
1392 1427 3.121126 CGTACGTGCTTGAAAAGGTACAG 60.121 47.826 7.22 0.00 46.35 2.74
1450 2796 7.376072 GCTTAATAGCTTATTGCCTTTTGTACG 59.624 37.037 0.00 0.00 44.27 3.67
1462 2812 5.163602 TGCCTTTTGTACGACTGAATGTTTT 60.164 36.000 0.00 0.00 0.00 2.43
1466 2816 6.912203 TTTGTACGACTGAATGTTTTCTCA 57.088 33.333 0.00 0.00 32.78 3.27
1474 2843 8.283291 ACGACTGAATGTTTTCTCAATCTAAAC 58.717 33.333 0.00 0.00 32.78 2.01
1482 2851 7.627340 TGTTTTCTCAATCTAAACAGTTCGTC 58.373 34.615 0.00 0.00 36.98 4.20
1485 2854 5.765176 TCTCAATCTAAACAGTTCGTCGAA 58.235 37.500 2.90 2.90 0.00 3.71
1488 2857 4.778534 ATCTAAACAGTTCGTCGAAGGA 57.221 40.909 8.18 0.00 0.00 3.36
1547 2916 2.657102 GATCCTGAGGGCAAGCTCCG 62.657 65.000 0.00 0.00 0.00 4.63
1591 2960 1.204312 GTCACGCGAGCAAAGTTCC 59.796 57.895 15.93 0.00 0.00 3.62
1625 3002 3.267900 CGGAGGTACGCGAAATCAT 57.732 52.632 15.93 0.00 0.00 2.45
1626 3003 2.410785 CGGAGGTACGCGAAATCATA 57.589 50.000 15.93 0.00 0.00 2.15
1655 3032 5.700832 TGTCGCTCTGTTAATCAATCTGTTT 59.299 36.000 0.00 0.00 0.00 2.83
1677 3058 3.055458 TGAACATCGGTGAAATGCTCCTA 60.055 43.478 0.65 0.00 0.00 2.94
1694 3079 3.629087 TCCTACTAGGAAGCTGTACACC 58.371 50.000 1.90 0.00 42.51 4.16
1697 3082 1.817447 ACTAGGAAGCTGTACACCGAC 59.183 52.381 0.00 0.00 0.00 4.79
1969 6944 2.290323 CGTGGAGGAGGTCAAGGAAATT 60.290 50.000 0.00 0.00 0.00 1.82
2116 7520 7.556844 TGGTCTATCTCTTTACCTTTGATGAC 58.443 38.462 0.00 0.00 32.99 3.06
2187 7595 4.928020 GTCCTTTCCGACCTTTGTTAGTAG 59.072 45.833 0.00 0.00 0.00 2.57
2189 7597 5.774690 TCCTTTCCGACCTTTGTTAGTAGTA 59.225 40.000 0.00 0.00 0.00 1.82
2196 7604 7.394359 TCCGACCTTTGTTAGTAGTACTATTGT 59.606 37.037 10.82 3.06 29.64 2.71
2226 7634 3.265791 CTGCTCTTGTTACCTCATGGTC 58.734 50.000 0.00 0.00 44.78 4.02
2249 7657 1.214923 ACCGGGTGTTTTGTCCCTTTA 59.785 47.619 6.32 0.00 41.40 1.85
2294 7704 8.655651 TTTTTGTTGTTGATTGGATAGGTTTC 57.344 30.769 0.00 0.00 0.00 2.78
2362 7772 2.233355 GTTTCAACGTCACATCGCATG 58.767 47.619 0.00 0.00 0.00 4.06
2390 7800 1.960689 CAAAGTGAATTTCCGGTGGGT 59.039 47.619 0.00 0.00 33.83 4.51
2423 7846 1.012841 GATGCACTCAGCTTGCCTAC 58.987 55.000 6.42 0.00 45.94 3.18
2435 7858 2.866762 GCTTGCCTACTCGGATTTACAG 59.133 50.000 0.00 0.00 33.16 2.74
2436 7859 3.430374 GCTTGCCTACTCGGATTTACAGA 60.430 47.826 0.00 0.00 33.16 3.41
2437 7860 4.363999 CTTGCCTACTCGGATTTACAGAG 58.636 47.826 0.00 0.00 44.25 3.35
2442 7865 2.389715 ACTCGGATTTACAGAGGAGGG 58.610 52.381 0.00 0.00 43.28 4.30
2467 7890 2.381961 AGATCAGGGGAGGGAGAGATAC 59.618 54.545 0.00 0.00 0.00 2.24
2476 7899 3.399330 GAGGGAGAGATACAGAGAGACG 58.601 54.545 0.00 0.00 0.00 4.18
2519 7948 8.088365 TCTATCTGAAAACTCGACATTCTTCAA 58.912 33.333 0.00 0.00 0.00 2.69
2521 7950 7.315247 TCTGAAAACTCGACATTCTTCAAAA 57.685 32.000 0.00 0.00 0.00 2.44
2522 7951 7.930217 TCTGAAAACTCGACATTCTTCAAAAT 58.070 30.769 0.00 0.00 0.00 1.82
2523 7952 9.051679 TCTGAAAACTCGACATTCTTCAAAATA 57.948 29.630 0.00 0.00 0.00 1.40
2524 7953 9.663904 CTGAAAACTCGACATTCTTCAAAATAA 57.336 29.630 0.00 0.00 0.00 1.40
2525 7954 9.445786 TGAAAACTCGACATTCTTCAAAATAAC 57.554 29.630 0.00 0.00 0.00 1.89
2526 7955 8.797266 AAAACTCGACATTCTTCAAAATAACC 57.203 30.769 0.00 0.00 0.00 2.85
2527 7956 7.745620 AACTCGACATTCTTCAAAATAACCT 57.254 32.000 0.00 0.00 0.00 3.50
2528 7957 7.745620 ACTCGACATTCTTCAAAATAACCTT 57.254 32.000 0.00 0.00 0.00 3.50
2529 7958 8.166422 ACTCGACATTCTTCAAAATAACCTTT 57.834 30.769 0.00 0.00 0.00 3.11
2530 7959 8.630037 ACTCGACATTCTTCAAAATAACCTTTT 58.370 29.630 0.00 0.00 0.00 2.27
2531 7960 9.463443 CTCGACATTCTTCAAAATAACCTTTTT 57.537 29.630 0.00 0.00 0.00 1.94
2572 8001 9.949174 AAAAGACAAAATTTTATGCCATGAAAC 57.051 25.926 2.44 0.00 0.00 2.78
2573 8002 7.350110 AGACAAAATTTTATGCCATGAAACG 57.650 32.000 2.44 0.00 0.00 3.60
2574 8003 5.925907 ACAAAATTTTATGCCATGAAACGC 58.074 33.333 2.44 0.00 0.00 4.84
2575 8004 5.700373 ACAAAATTTTATGCCATGAAACGCT 59.300 32.000 2.44 0.00 0.00 5.07
2576 8005 6.870965 ACAAAATTTTATGCCATGAAACGCTA 59.129 30.769 2.44 0.00 0.00 4.26
2577 8006 7.548780 ACAAAATTTTATGCCATGAAACGCTAT 59.451 29.630 2.44 0.00 0.00 2.97
2578 8007 8.389603 CAAAATTTTATGCCATGAAACGCTATT 58.610 29.630 2.44 0.00 0.00 1.73
2579 8008 8.491331 AAATTTTATGCCATGAAACGCTATTT 57.509 26.923 0.00 0.00 0.00 1.40
2580 8009 9.593134 AAATTTTATGCCATGAAACGCTATTTA 57.407 25.926 0.00 0.00 0.00 1.40
2581 8010 8.801715 ATTTTATGCCATGAAACGCTATTTAG 57.198 30.769 0.00 0.00 0.00 1.85
2582 8011 7.561021 TTTATGCCATGAAACGCTATTTAGA 57.439 32.000 0.00 0.00 0.00 2.10
2583 8012 7.561021 TTATGCCATGAAACGCTATTTAGAA 57.439 32.000 0.00 0.00 0.00 2.10
2584 8013 5.484173 TGCCATGAAACGCTATTTAGAAG 57.516 39.130 0.00 0.00 0.00 2.85
2585 8014 4.201910 TGCCATGAAACGCTATTTAGAAGC 60.202 41.667 0.00 0.00 36.60 3.86
2586 8015 4.201910 GCCATGAAACGCTATTTAGAAGCA 60.202 41.667 0.00 0.00 40.08 3.91
2587 8016 5.505286 CCATGAAACGCTATTTAGAAGCAG 58.495 41.667 0.00 0.00 40.08 4.24
2588 8017 5.065218 CCATGAAACGCTATTTAGAAGCAGT 59.935 40.000 0.00 0.00 40.08 4.40
2589 8018 6.257849 CCATGAAACGCTATTTAGAAGCAGTA 59.742 38.462 0.00 0.00 40.08 2.74
2590 8019 7.201609 CCATGAAACGCTATTTAGAAGCAGTAA 60.202 37.037 0.00 0.00 40.08 2.24
2591 8020 7.661127 TGAAACGCTATTTAGAAGCAGTAAA 57.339 32.000 0.00 0.00 40.08 2.01
2592 8021 8.090250 TGAAACGCTATTTAGAAGCAGTAAAA 57.910 30.769 0.00 0.00 40.08 1.52
2593 8022 8.726988 TGAAACGCTATTTAGAAGCAGTAAAAT 58.273 29.630 0.00 0.00 40.08 1.82
2594 8023 9.556030 GAAACGCTATTTAGAAGCAGTAAAATT 57.444 29.630 0.00 0.00 40.08 1.82
2595 8024 9.908152 AAACGCTATTTAGAAGCAGTAAAATTT 57.092 25.926 0.00 0.00 40.08 1.82
2596 8025 8.895932 ACGCTATTTAGAAGCAGTAAAATTTG 57.104 30.769 0.00 0.00 40.08 2.32
2597 8026 8.512138 ACGCTATTTAGAAGCAGTAAAATTTGT 58.488 29.630 0.00 0.00 40.08 2.83
2598 8027 9.000018 CGCTATTTAGAAGCAGTAAAATTTGTC 58.000 33.333 0.00 0.00 40.08 3.18
2655 8084 3.244033 CAAAACTTTGTGCCTTGGACA 57.756 42.857 0.00 0.00 33.59 4.02
2656 8085 3.795877 CAAAACTTTGTGCCTTGGACAT 58.204 40.909 0.00 0.00 33.22 3.06
2657 8086 4.942852 CAAAACTTTGTGCCTTGGACATA 58.057 39.130 0.00 0.00 33.22 2.29
2658 8087 4.584327 AAACTTTGTGCCTTGGACATAC 57.416 40.909 0.00 0.00 33.22 2.39
2659 8088 2.514803 ACTTTGTGCCTTGGACATACC 58.485 47.619 0.00 0.00 33.22 2.73
2660 8089 2.108250 ACTTTGTGCCTTGGACATACCT 59.892 45.455 0.00 0.00 39.86 3.08
2661 8090 2.969821 TTGTGCCTTGGACATACCTT 57.030 45.000 0.00 0.00 39.86 3.50
2662 8091 2.969821 TGTGCCTTGGACATACCTTT 57.030 45.000 0.00 0.00 39.86 3.11
2663 8092 2.513753 TGTGCCTTGGACATACCTTTG 58.486 47.619 0.00 0.00 39.86 2.77
2664 8093 1.202348 GTGCCTTGGACATACCTTTGC 59.798 52.381 0.00 0.00 39.86 3.68
2665 8094 0.817654 GCCTTGGACATACCTTTGCC 59.182 55.000 0.00 0.00 39.86 4.52
2666 8095 1.890573 GCCTTGGACATACCTTTGCCA 60.891 52.381 0.00 0.00 39.86 4.92
2667 8096 2.524306 CCTTGGACATACCTTTGCCAA 58.476 47.619 0.00 0.00 39.86 4.52
2668 8097 2.231235 CCTTGGACATACCTTTGCCAAC 59.769 50.000 0.00 0.00 39.86 3.77
2669 8098 2.666272 TGGACATACCTTTGCCAACA 57.334 45.000 0.00 0.00 39.86 3.33
2670 8099 3.168035 TGGACATACCTTTGCCAACAT 57.832 42.857 0.00 0.00 39.86 2.71
2671 8100 2.824936 TGGACATACCTTTGCCAACATG 59.175 45.455 0.00 0.00 39.86 3.21
2672 8101 2.825532 GGACATACCTTTGCCAACATGT 59.174 45.455 0.00 0.00 35.41 3.21
2673 8102 4.013728 GGACATACCTTTGCCAACATGTA 58.986 43.478 0.00 0.00 35.41 2.29
2674 8103 4.644685 GGACATACCTTTGCCAACATGTAT 59.355 41.667 0.00 0.00 35.41 2.29
2675 8104 5.450412 GGACATACCTTTGCCAACATGTATG 60.450 44.000 0.00 14.10 38.18 2.39
2676 8105 4.142182 ACATACCTTTGCCAACATGTATGC 60.142 41.667 15.01 11.51 37.01 3.14
2677 8106 2.246469 ACCTTTGCCAACATGTATGCA 58.754 42.857 15.91 15.91 0.00 3.96
2678 8107 2.833338 ACCTTTGCCAACATGTATGCAT 59.167 40.909 19.32 3.79 33.08 3.96
2679 8108 4.022603 ACCTTTGCCAACATGTATGCATA 58.977 39.130 19.32 14.72 33.30 3.14
2680 8109 4.650588 ACCTTTGCCAACATGTATGCATAT 59.349 37.500 19.32 0.00 33.30 1.78
2681 8110 5.129155 ACCTTTGCCAACATGTATGCATATT 59.871 36.000 19.32 0.00 33.30 1.28
2682 8111 6.050432 CCTTTGCCAACATGTATGCATATTT 58.950 36.000 19.32 0.00 33.30 1.40
2683 8112 6.539464 CCTTTGCCAACATGTATGCATATTTT 59.461 34.615 19.32 0.00 33.30 1.82
2684 8113 7.066043 CCTTTGCCAACATGTATGCATATTTTT 59.934 33.333 19.32 0.00 33.30 1.94
2715 8144 9.145865 ACAATTTTTGAAGATTACAAAACGTGT 57.854 25.926 0.00 0.00 43.62 4.49
2728 8157 6.713792 ACAAAACGTGTAAAAAGCACATTT 57.286 29.167 0.00 0.00 39.29 2.32
2729 8158 7.123160 ACAAAACGTGTAAAAAGCACATTTT 57.877 28.000 0.00 0.00 41.05 1.82
2750 8179 2.747396 TGAAAAATGGGTGCAGATGC 57.253 45.000 0.00 0.00 42.50 3.91
2751 8180 1.275856 TGAAAAATGGGTGCAGATGCC 59.724 47.619 1.72 0.00 41.18 4.40
2752 8181 0.614812 AAAAATGGGTGCAGATGCCC 59.385 50.000 3.10 3.10 45.04 5.36
2753 8182 1.266867 AAAATGGGTGCAGATGCCCC 61.267 55.000 18.99 18.99 45.76 5.80
2758 8187 4.722700 GTGCAGATGCCCCCGTGT 62.723 66.667 1.72 0.00 41.18 4.49
2759 8188 4.720902 TGCAGATGCCCCCGTGTG 62.721 66.667 1.72 0.00 41.18 3.82
2761 8190 4.720902 CAGATGCCCCCGTGTGCA 62.721 66.667 0.00 0.00 42.52 4.57
2762 8191 4.415150 AGATGCCCCCGTGTGCAG 62.415 66.667 0.00 0.00 41.46 4.41
2763 8192 4.408821 GATGCCCCCGTGTGCAGA 62.409 66.667 0.00 0.00 41.46 4.26
2764 8193 3.704231 GATGCCCCCGTGTGCAGAT 62.704 63.158 0.00 0.00 41.46 2.90
2765 8194 3.704231 ATGCCCCCGTGTGCAGATC 62.704 63.158 0.00 0.00 41.46 2.75
2767 8196 4.082523 CCCCCGTGTGCAGATCGT 62.083 66.667 0.00 0.00 0.00 3.73
2768 8197 2.815211 CCCCGTGTGCAGATCGTG 60.815 66.667 0.00 0.00 0.00 4.35
2780 8209 1.600957 CAGATCGTGCATGGATGAACC 59.399 52.381 13.51 8.41 32.47 3.62
2781 8210 0.947244 GATCGTGCATGGATGAACCC 59.053 55.000 13.51 2.56 38.00 4.11
2782 8211 0.815213 ATCGTGCATGGATGAACCCG 60.815 55.000 13.51 0.00 38.00 5.28
2783 8212 2.472059 CGTGCATGGATGAACCCGG 61.472 63.158 0.00 0.00 38.00 5.73
2784 8213 2.120909 GTGCATGGATGAACCCGGG 61.121 63.158 22.25 22.25 38.00 5.73
2785 8214 2.275418 GCATGGATGAACCCGGGT 59.725 61.111 24.16 24.16 38.00 5.28
2786 8215 1.275421 TGCATGGATGAACCCGGGTA 61.275 55.000 30.52 13.83 38.00 3.69
2787 8216 0.818040 GCATGGATGAACCCGGGTAC 60.818 60.000 30.52 18.16 38.00 3.34
2788 8217 0.544223 CATGGATGAACCCGGGTACA 59.456 55.000 30.52 20.65 38.00 2.90
2789 8218 1.142870 CATGGATGAACCCGGGTACAT 59.857 52.381 30.52 21.91 38.00 2.29
2790 8219 2.177811 TGGATGAACCCGGGTACATA 57.822 50.000 30.52 14.16 38.00 2.29
2791 8220 1.764134 TGGATGAACCCGGGTACATAC 59.236 52.381 30.52 18.12 38.00 2.39
2792 8221 1.269936 GGATGAACCCGGGTACATACG 60.270 57.143 30.52 0.00 0.00 3.06
2793 8222 1.682854 GATGAACCCGGGTACATACGA 59.317 52.381 30.52 6.05 0.00 3.43
2794 8223 1.554836 TGAACCCGGGTACATACGAA 58.445 50.000 30.52 3.32 0.00 3.85
2795 8224 1.204467 TGAACCCGGGTACATACGAAC 59.796 52.381 30.52 10.22 0.00 3.95
2796 8225 0.536724 AACCCGGGTACATACGAACC 59.463 55.000 30.52 0.00 34.85 3.62
2804 8233 3.004862 GGTACATACGAACCCACTTTGG 58.995 50.000 0.00 0.00 37.25 3.28
2805 8234 3.306919 GGTACATACGAACCCACTTTGGA 60.307 47.826 0.00 0.00 40.96 3.53
2806 8235 3.495434 ACATACGAACCCACTTTGGAA 57.505 42.857 0.00 0.00 40.96 3.53
2807 8236 3.822940 ACATACGAACCCACTTTGGAAA 58.177 40.909 0.00 0.00 40.96 3.13
2808 8237 4.208746 ACATACGAACCCACTTTGGAAAA 58.791 39.130 0.00 0.00 40.96 2.29
2809 8238 4.037089 ACATACGAACCCACTTTGGAAAAC 59.963 41.667 0.00 0.00 40.96 2.43
2810 8239 2.448453 ACGAACCCACTTTGGAAAACA 58.552 42.857 0.00 0.00 40.96 2.83
2811 8240 2.164827 ACGAACCCACTTTGGAAAACAC 59.835 45.455 0.00 0.00 40.96 3.32
2812 8241 2.164624 CGAACCCACTTTGGAAAACACA 59.835 45.455 0.00 0.00 40.96 3.72
2813 8242 3.181480 CGAACCCACTTTGGAAAACACAT 60.181 43.478 0.00 0.00 40.96 3.21
2814 8243 4.679372 CGAACCCACTTTGGAAAACACATT 60.679 41.667 0.00 0.00 40.96 2.71
2815 8244 4.835284 ACCCACTTTGGAAAACACATTT 57.165 36.364 0.00 0.00 40.96 2.32
2816 8245 5.172687 ACCCACTTTGGAAAACACATTTT 57.827 34.783 0.00 0.00 40.96 1.82
2817 8246 4.940654 ACCCACTTTGGAAAACACATTTTG 59.059 37.500 0.00 0.00 40.96 2.44
2818 8247 4.201901 CCCACTTTGGAAAACACATTTTGC 60.202 41.667 0.00 0.00 44.15 3.68
2855 8284 3.503749 AAAAAGTGTGCGCGGACA 58.496 50.000 30.21 30.21 0.00 4.02
2856 8285 2.029743 AAAAAGTGTGCGCGGACAT 58.970 47.368 35.48 19.04 0.00 3.06
2857 8286 0.040425 AAAAAGTGTGCGCGGACATC 60.040 50.000 35.48 26.46 0.00 3.06
2858 8287 0.884704 AAAAGTGTGCGCGGACATCT 60.885 50.000 35.48 28.06 0.00 2.90
2859 8288 0.884704 AAAGTGTGCGCGGACATCTT 60.885 50.000 35.48 31.26 0.00 2.40
2860 8289 1.291877 AAGTGTGCGCGGACATCTTC 61.292 55.000 35.48 22.40 0.00 2.87
2861 8290 2.027073 GTGTGCGCGGACATCTTCA 61.027 57.895 35.48 9.71 0.00 3.02
2862 8291 1.079197 TGTGCGCGGACATCTTCAT 60.079 52.632 30.21 0.00 0.00 2.57
2863 8292 0.174617 TGTGCGCGGACATCTTCATA 59.825 50.000 30.21 3.91 0.00 2.15
2864 8293 1.202521 TGTGCGCGGACATCTTCATAT 60.203 47.619 30.21 0.00 0.00 1.78
2865 8294 1.867233 GTGCGCGGACATCTTCATATT 59.133 47.619 26.60 0.00 0.00 1.28
2866 8295 2.096713 GTGCGCGGACATCTTCATATTC 60.097 50.000 26.60 0.00 0.00 1.75
2867 8296 2.224042 TGCGCGGACATCTTCATATTCT 60.224 45.455 8.83 0.00 0.00 2.40
2868 8297 3.005367 TGCGCGGACATCTTCATATTCTA 59.995 43.478 8.83 0.00 0.00 2.10
2869 8298 4.177026 GCGCGGACATCTTCATATTCTAT 58.823 43.478 8.83 0.00 0.00 1.98
2870 8299 4.032217 GCGCGGACATCTTCATATTCTATG 59.968 45.833 8.83 0.00 0.00 2.23
2871 8300 5.164233 CGCGGACATCTTCATATTCTATGT 58.836 41.667 0.00 0.00 33.63 2.29
2872 8301 5.061435 CGCGGACATCTTCATATTCTATGTG 59.939 44.000 0.00 0.00 31.19 3.21
2873 8302 5.928839 GCGGACATCTTCATATTCTATGTGT 59.071 40.000 0.00 0.00 31.19 3.72
2874 8303 6.128715 GCGGACATCTTCATATTCTATGTGTG 60.129 42.308 0.00 0.00 31.19 3.82
2875 8304 6.925718 CGGACATCTTCATATTCTATGTGTGT 59.074 38.462 0.00 0.00 31.19 3.72
2876 8305 7.095899 CGGACATCTTCATATTCTATGTGTGTG 60.096 40.741 0.00 0.00 31.19 3.82
2877 8306 7.307632 GGACATCTTCATATTCTATGTGTGTGC 60.308 40.741 0.00 0.00 31.19 4.57
2878 8307 7.049754 ACATCTTCATATTCTATGTGTGTGCA 58.950 34.615 0.00 0.00 29.93 4.57
2879 8308 7.226128 ACATCTTCATATTCTATGTGTGTGCAG 59.774 37.037 0.00 0.00 29.93 4.41
2880 8309 6.877236 TCTTCATATTCTATGTGTGTGCAGA 58.123 36.000 0.00 0.00 0.00 4.26
2881 8310 7.330262 TCTTCATATTCTATGTGTGTGCAGAA 58.670 34.615 0.00 0.00 0.00 3.02
2882 8311 7.823799 TCTTCATATTCTATGTGTGTGCAGAAA 59.176 33.333 0.00 0.00 31.25 2.52
2883 8312 7.543947 TCATATTCTATGTGTGTGCAGAAAG 57.456 36.000 0.00 0.00 31.25 2.62
2884 8313 7.105588 TCATATTCTATGTGTGTGCAGAAAGT 58.894 34.615 0.00 0.00 31.25 2.66
2885 8314 7.607607 TCATATTCTATGTGTGTGCAGAAAGTT 59.392 33.333 0.00 0.00 31.25 2.66
2886 8315 6.639632 ATTCTATGTGTGTGCAGAAAGTTT 57.360 33.333 0.00 0.00 31.25 2.66
2887 8316 5.673337 TCTATGTGTGTGCAGAAAGTTTC 57.327 39.130 7.57 7.57 0.00 2.78
2888 8317 5.122519 TCTATGTGTGTGCAGAAAGTTTCA 58.877 37.500 17.65 0.00 0.00 2.69
2889 8318 4.924305 ATGTGTGTGCAGAAAGTTTCAT 57.076 36.364 17.65 0.50 0.00 2.57
2890 8319 6.934083 TCTATGTGTGTGCAGAAAGTTTCATA 59.066 34.615 17.65 3.61 0.00 2.15
2891 8320 5.422666 TGTGTGTGCAGAAAGTTTCATAG 57.577 39.130 17.65 8.12 0.00 2.23
2892 8321 5.122519 TGTGTGTGCAGAAAGTTTCATAGA 58.877 37.500 17.65 0.00 0.00 1.98
2893 8322 5.588246 TGTGTGTGCAGAAAGTTTCATAGAA 59.412 36.000 17.65 0.00 0.00 2.10
2894 8323 6.094742 TGTGTGTGCAGAAAGTTTCATAGAAA 59.905 34.615 17.65 0.00 0.00 2.52
2895 8324 6.972328 GTGTGTGCAGAAAGTTTCATAGAAAA 59.028 34.615 17.65 0.00 0.00 2.29
2896 8325 7.487829 GTGTGTGCAGAAAGTTTCATAGAAAAA 59.512 33.333 17.65 0.00 0.00 1.94
2897 8326 8.196771 TGTGTGCAGAAAGTTTCATAGAAAAAT 58.803 29.630 17.65 0.00 0.00 1.82
2898 8327 9.677567 GTGTGCAGAAAGTTTCATAGAAAAATA 57.322 29.630 17.65 0.00 0.00 1.40
2901 8330 9.691362 TGCAGAAAGTTTCATAGAAAAATAACC 57.309 29.630 17.65 0.00 0.00 2.85
2902 8331 9.914131 GCAGAAAGTTTCATAGAAAAATAACCT 57.086 29.630 17.65 0.00 0.00 3.50
2936 8365 2.022129 CACACTCCCGTCTTCACGC 61.022 63.158 0.00 0.00 45.29 5.34
2937 8366 2.201022 ACACTCCCGTCTTCACGCT 61.201 57.895 0.00 0.00 45.29 5.07
2960 8389 0.248012 TTATCCCGTTGCGCTCTTGA 59.752 50.000 9.73 0.00 0.00 3.02
2974 8403 1.865970 CTCTTGATCTGCGCCATCTTC 59.134 52.381 4.18 0.00 0.00 2.87
2975 8404 1.483827 TCTTGATCTGCGCCATCTTCT 59.516 47.619 4.18 0.00 0.00 2.85
2976 8405 1.598132 CTTGATCTGCGCCATCTTCTG 59.402 52.381 4.18 0.00 0.00 3.02
2978 8407 0.883814 GATCTGCGCCATCTTCTGGG 60.884 60.000 4.18 0.00 46.06 4.45
2984 8413 2.507944 CCATCTTCTGGGCCTCCG 59.492 66.667 4.53 0.00 41.82 4.63
2990 8419 3.864983 TTCTGGGCCTCCGGTTCCT 62.865 63.158 4.53 0.00 40.36 3.36
2991 8420 4.101448 CTGGGCCTCCGGTTCCTG 62.101 72.222 4.53 0.00 34.69 3.86
3040 8469 1.760875 GGGCCGATGTCCAGGAGTA 60.761 63.158 0.00 0.00 35.79 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.088532 TCGCCAAGCCAAATTACTTCAT 58.911 40.909 0.00 0.00 0.00 2.57
13 14 2.227865 GTCGCCAAGCCAAATTACTTCA 59.772 45.455 0.00 0.00 0.00 3.02
193 195 2.920912 AGCGTTTCCCCGGAGACA 60.921 61.111 0.73 0.00 30.69 3.41
423 425 0.394216 CCATTGATTCCTCACGGGCA 60.394 55.000 0.00 0.00 34.39 5.36
462 464 1.037030 GCGGGGAATCAATGGCAAGA 61.037 55.000 0.00 0.00 0.00 3.02
491 494 4.016706 CGTCTTCCCCCAACGGCT 62.017 66.667 0.00 0.00 32.96 5.52
666 671 0.519175 CAGACAATTTTCTCGCGCCG 60.519 55.000 0.00 0.00 0.00 6.46
668 673 0.179189 CCCAGACAATTTTCTCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
669 674 0.447801 CCCCAGACAATTTTCTCGCG 59.552 55.000 0.00 0.00 0.00 5.87
670 675 1.740025 CTCCCCAGACAATTTTCTCGC 59.260 52.381 0.00 0.00 0.00 5.03
671 676 2.359900 CCTCCCCAGACAATTTTCTCG 58.640 52.381 0.00 0.00 0.00 4.04
672 677 2.095461 GCCTCCCCAGACAATTTTCTC 58.905 52.381 0.00 0.00 0.00 2.87
673 678 1.272704 GGCCTCCCCAGACAATTTTCT 60.273 52.381 0.00 0.00 0.00 2.52
674 679 1.186200 GGCCTCCCCAGACAATTTTC 58.814 55.000 0.00 0.00 0.00 2.29
675 680 0.786435 AGGCCTCCCCAGACAATTTT 59.214 50.000 0.00 0.00 35.39 1.82
676 681 0.786435 AAGGCCTCCCCAGACAATTT 59.214 50.000 5.23 0.00 35.39 1.82
677 682 0.332972 GAAGGCCTCCCCAGACAATT 59.667 55.000 5.23 0.00 35.39 2.32
678 683 1.575447 GGAAGGCCTCCCCAGACAAT 61.575 60.000 5.23 0.00 38.44 2.71
679 684 2.231380 GGAAGGCCTCCCCAGACAA 61.231 63.158 5.23 0.00 38.44 3.18
680 685 2.610859 GGAAGGCCTCCCCAGACA 60.611 66.667 5.23 0.00 38.44 3.41
681 686 2.285743 AGGAAGGCCTCCCCAGAC 60.286 66.667 22.02 2.76 46.81 3.51
682 687 2.285668 CAGGAAGGCCTCCCCAGA 60.286 66.667 22.02 0.00 46.81 3.86
683 688 3.415087 CCAGGAAGGCCTCCCCAG 61.415 72.222 22.02 15.58 46.81 4.45
684 689 4.285790 ACCAGGAAGGCCTCCCCA 62.286 66.667 22.02 0.00 46.81 4.96
685 690 3.732849 CACCAGGAAGGCCTCCCC 61.733 72.222 3.35 10.50 46.81 4.81
686 691 4.432741 GCACCAGGAAGGCCTCCC 62.433 72.222 5.23 0.58 46.81 4.30
687 692 4.785453 CGCACCAGGAAGGCCTCC 62.785 72.222 5.23 9.66 44.80 4.30
693 698 3.599285 TTACCCGCGCACCAGGAAG 62.599 63.158 8.75 0.00 0.00 3.46
694 699 3.179888 TTTACCCGCGCACCAGGAA 62.180 57.895 8.75 0.00 0.00 3.36
695 700 3.599285 CTTTACCCGCGCACCAGGA 62.599 63.158 8.75 0.00 0.00 3.86
696 701 2.869503 ATCTTTACCCGCGCACCAGG 62.870 60.000 8.75 4.52 0.00 4.45
697 702 1.449601 ATCTTTACCCGCGCACCAG 60.450 57.895 8.75 0.00 0.00 4.00
698 703 1.743623 CATCTTTACCCGCGCACCA 60.744 57.895 8.75 0.00 0.00 4.17
699 704 3.098555 CATCTTTACCCGCGCACC 58.901 61.111 8.75 0.00 0.00 5.01
700 705 2.036764 GAGCATCTTTACCCGCGCAC 62.037 60.000 8.75 0.00 0.00 5.34
701 706 1.813753 GAGCATCTTTACCCGCGCA 60.814 57.895 8.75 0.00 0.00 6.09
702 707 3.014856 GAGCATCTTTACCCGCGC 58.985 61.111 0.00 0.00 0.00 6.86
713 718 1.134965 ACGCACTGACCTTAGAGCATC 60.135 52.381 0.00 0.00 34.50 3.91
714 719 0.898320 ACGCACTGACCTTAGAGCAT 59.102 50.000 0.00 0.00 34.50 3.79
715 720 1.541379 TACGCACTGACCTTAGAGCA 58.459 50.000 0.00 0.00 34.50 4.26
716 721 2.873133 ATACGCACTGACCTTAGAGC 57.127 50.000 0.00 0.00 0.00 4.09
717 722 6.320494 AGAATATACGCACTGACCTTAGAG 57.680 41.667 0.00 0.00 0.00 2.43
718 723 6.710597 AAGAATATACGCACTGACCTTAGA 57.289 37.500 0.00 0.00 0.00 2.10
719 724 6.421202 GGAAAGAATATACGCACTGACCTTAG 59.579 42.308 0.00 0.00 0.00 2.18
807 812 3.884169 TGTACTCGCAAATTGCAAAGTC 58.116 40.909 21.24 14.95 45.36 3.01
808 813 3.980646 TGTACTCGCAAATTGCAAAGT 57.019 38.095 21.31 21.31 45.36 2.66
809 814 4.475028 TCATGTACTCGCAAATTGCAAAG 58.525 39.130 18.65 15.82 45.36 2.77
812 817 4.700268 AATCATGTACTCGCAAATTGCA 57.300 36.364 18.65 4.50 45.36 4.08
813 818 6.912051 TGAATAATCATGTACTCGCAAATTGC 59.088 34.615 8.09 8.09 40.69 3.56
815 820 7.645340 GCTTGAATAATCATGTACTCGCAAATT 59.355 33.333 0.00 0.00 34.96 1.82
816 821 7.012704 AGCTTGAATAATCATGTACTCGCAAAT 59.987 33.333 0.00 0.00 34.96 2.32
818 823 5.817296 AGCTTGAATAATCATGTACTCGCAA 59.183 36.000 0.00 0.00 34.96 4.85
819 824 5.359756 AGCTTGAATAATCATGTACTCGCA 58.640 37.500 0.00 0.00 34.96 5.10
820 825 5.914085 AGCTTGAATAATCATGTACTCGC 57.086 39.130 0.00 0.00 34.96 5.03
821 826 6.642540 TGCTAGCTTGAATAATCATGTACTCG 59.357 38.462 17.23 0.00 34.96 4.18
822 827 7.358765 CGTGCTAGCTTGAATAATCATGTACTC 60.359 40.741 17.23 0.00 34.96 2.59
823 828 6.422100 CGTGCTAGCTTGAATAATCATGTACT 59.578 38.462 17.23 0.00 34.96 2.73
824 829 6.201044 ACGTGCTAGCTTGAATAATCATGTAC 59.799 38.462 17.23 0.00 34.96 2.90
870 886 1.861542 CTTCGGGTCCGCATGCAAAA 61.862 55.000 19.57 0.00 39.59 2.44
876 892 2.125106 GAAGCTTCGGGTCCGCAT 60.125 61.111 11.40 0.00 39.59 4.73
877 893 3.171828 TTGAAGCTTCGGGTCCGCA 62.172 57.895 21.11 0.00 39.59 5.69
878 894 2.358247 TTGAAGCTTCGGGTCCGC 60.358 61.111 21.11 0.00 39.59 5.54
879 895 0.737715 CTCTTGAAGCTTCGGGTCCG 60.738 60.000 21.11 2.52 41.35 4.79
926 948 1.472878 TCTCCGATGTCAAAGACCTCG 59.527 52.381 14.92 14.92 45.34 4.63
928 950 1.205893 GCTCTCCGATGTCAAAGACCT 59.794 52.381 0.00 0.00 0.00 3.85
929 951 1.646189 GCTCTCCGATGTCAAAGACC 58.354 55.000 0.00 0.00 0.00 3.85
932 954 1.338105 TGTGGCTCTCCGATGTCAAAG 60.338 52.381 0.00 0.00 34.14 2.77
946 968 1.724582 GCTTGTCGTTGGTTGTGGCT 61.725 55.000 0.00 0.00 0.00 4.75
947 969 1.299089 GCTTGTCGTTGGTTGTGGC 60.299 57.895 0.00 0.00 0.00 5.01
953 975 4.595538 TCCGCGCTTGTCGTTGGT 62.596 61.111 5.56 0.00 41.07 3.67
955 977 1.827315 TTTCTCCGCGCTTGTCGTTG 61.827 55.000 5.56 0.00 41.07 4.10
991 1021 2.893895 CATCTCCATGTGCGCGCT 60.894 61.111 33.29 9.55 0.00 5.92
1329 1359 0.813210 GCATGAAGGCGGAGAGGAAG 60.813 60.000 0.00 0.00 0.00 3.46
1392 1427 2.677836 TGTACCTTTGCAGATTCGATGC 59.322 45.455 2.50 2.50 44.11 3.91
1429 1532 6.037172 CAGTCGTACAAAAGGCAATAAGCTAT 59.963 38.462 0.00 0.00 44.79 2.97
1430 1533 5.350365 CAGTCGTACAAAAGGCAATAAGCTA 59.650 40.000 0.00 0.00 44.79 3.32
1450 2796 9.604626 CTGTTTAGATTGAGAAAACATTCAGTC 57.395 33.333 0.83 0.00 41.01 3.51
1462 2812 5.366829 TCGACGAACTGTTTAGATTGAGA 57.633 39.130 0.00 0.00 0.00 3.27
1466 2816 5.130292 TCCTTCGACGAACTGTTTAGATT 57.870 39.130 6.10 0.00 0.00 2.40
1474 2843 1.699343 GTTCCTCCTTCGACGAACTG 58.301 55.000 6.10 1.06 33.63 3.16
1482 2851 1.446272 GTCCAGCGTTCCTCCTTCG 60.446 63.158 0.00 0.00 0.00 3.79
1485 2854 2.286523 CCAGTCCAGCGTTCCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
1488 2857 1.599047 CATCCAGTCCAGCGTTCCT 59.401 57.895 0.00 0.00 0.00 3.36
1578 2947 1.916697 GCTGGAGGAACTTTGCTCGC 61.917 60.000 4.61 0.50 45.36 5.03
1625 3002 5.142061 TGATTAACAGAGCGACAGGTTTA 57.858 39.130 0.00 0.00 0.00 2.01
1626 3003 4.002906 TGATTAACAGAGCGACAGGTTT 57.997 40.909 0.00 0.00 0.00 3.27
1655 3032 2.083774 GGAGCATTTCACCGATGTTCA 58.916 47.619 3.92 0.00 36.73 3.18
1664 3041 4.123506 GCTTCCTAGTAGGAGCATTTCAC 58.876 47.826 24.35 7.84 46.73 3.18
1677 3058 1.817447 GTCGGTGTACAGCTTCCTAGT 59.183 52.381 21.80 0.00 0.00 2.57
1694 3079 8.915871 ATTTGGTCAATTTCAAATATCAGTCG 57.084 30.769 8.54 0.00 40.50 4.18
2135 7542 6.985117 ACAGCACTGACAAATCACAAATTAT 58.015 32.000 4.31 0.00 0.00 1.28
2187 7595 9.672086 CAAGAGCAGTAGATAGAACAATAGTAC 57.328 37.037 0.00 0.00 0.00 2.73
2189 7597 8.299990 ACAAGAGCAGTAGATAGAACAATAGT 57.700 34.615 0.00 0.00 0.00 2.12
2196 7604 6.890268 TGAGGTAACAAGAGCAGTAGATAGAA 59.110 38.462 0.00 0.00 41.41 2.10
2226 7634 2.255881 GGACAAAACACCCGGTCCG 61.256 63.158 3.60 3.60 40.29 4.79
2284 7694 3.802685 CGGAAACATCTCGAAACCTATCC 59.197 47.826 0.00 0.00 0.00 2.59
2294 7704 6.303496 CGATATAAAGTCTCGGAAACATCTCG 59.697 42.308 0.00 0.00 0.00 4.04
2362 7772 2.547855 GGAAATTCACTTTGGCACCACC 60.548 50.000 0.00 0.00 39.84 4.61
2390 7800 1.597195 GTGCATCACAACAACGAGTCA 59.403 47.619 0.00 0.00 34.08 3.41
2423 7846 2.625790 CTCCCTCCTCTGTAAATCCGAG 59.374 54.545 0.00 0.00 0.00 4.63
2435 7858 1.715785 CCCTGATCTTCTCCCTCCTC 58.284 60.000 0.00 0.00 0.00 3.71
2436 7859 0.267356 CCCCTGATCTTCTCCCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
2437 7860 0.266152 TCCCCTGATCTTCTCCCTCC 59.734 60.000 0.00 0.00 0.00 4.30
2442 7865 1.219213 TCTCCCTCCCCTGATCTTCTC 59.781 57.143 0.00 0.00 0.00 2.87
2467 7890 0.179000 CCATTTCCCCCGTCTCTCTG 59.821 60.000 0.00 0.00 0.00 3.35
2476 7899 4.908481 AGATAGAACTAGACCATTTCCCCC 59.092 45.833 0.00 0.00 0.00 5.40
2546 7975 9.949174 GTTTCATGGCATAAAATTTTGTCTTTT 57.051 25.926 13.76 0.00 0.00 2.27
2547 7976 8.281893 CGTTTCATGGCATAAAATTTTGTCTTT 58.718 29.630 13.76 0.00 0.00 2.52
2548 7977 7.571059 GCGTTTCATGGCATAAAATTTTGTCTT 60.571 33.333 13.76 0.00 0.00 3.01
2549 7978 6.128580 GCGTTTCATGGCATAAAATTTTGTCT 60.129 34.615 13.76 0.00 0.00 3.41
2550 7979 6.014898 GCGTTTCATGGCATAAAATTTTGTC 58.985 36.000 13.76 0.44 0.00 3.18
2551 7980 5.700373 AGCGTTTCATGGCATAAAATTTTGT 59.300 32.000 13.76 3.84 0.00 2.83
2552 7981 6.168164 AGCGTTTCATGGCATAAAATTTTG 57.832 33.333 13.76 0.00 0.00 2.44
2553 7982 8.491331 AATAGCGTTTCATGGCATAAAATTTT 57.509 26.923 8.75 8.75 0.00 1.82
2554 7983 8.491331 AAATAGCGTTTCATGGCATAAAATTT 57.509 26.923 0.00 0.00 0.00 1.82
2555 7984 9.248291 CTAAATAGCGTTTCATGGCATAAAATT 57.752 29.630 0.00 0.00 0.00 1.82
2556 7985 8.629158 TCTAAATAGCGTTTCATGGCATAAAAT 58.371 29.630 0.00 0.00 0.00 1.82
2557 7986 7.990917 TCTAAATAGCGTTTCATGGCATAAAA 58.009 30.769 0.00 0.00 0.00 1.52
2558 7987 7.561021 TCTAAATAGCGTTTCATGGCATAAA 57.439 32.000 0.00 0.00 0.00 1.40
2559 7988 7.561021 TTCTAAATAGCGTTTCATGGCATAA 57.439 32.000 0.00 0.00 0.00 1.90
2560 7989 6.293407 GCTTCTAAATAGCGTTTCATGGCATA 60.293 38.462 0.00 0.00 0.00 3.14
2561 7990 5.506317 GCTTCTAAATAGCGTTTCATGGCAT 60.506 40.000 0.00 0.00 0.00 4.40
2562 7991 4.201910 GCTTCTAAATAGCGTTTCATGGCA 60.202 41.667 0.00 0.00 0.00 4.92
2563 7992 4.201910 TGCTTCTAAATAGCGTTTCATGGC 60.202 41.667 0.00 0.00 41.54 4.40
2564 7993 5.065218 ACTGCTTCTAAATAGCGTTTCATGG 59.935 40.000 0.00 0.00 41.54 3.66
2565 7994 6.111768 ACTGCTTCTAAATAGCGTTTCATG 57.888 37.500 0.00 0.00 41.54 3.07
2566 7995 7.843490 TTACTGCTTCTAAATAGCGTTTCAT 57.157 32.000 0.00 0.00 41.54 2.57
2567 7996 7.661127 TTTACTGCTTCTAAATAGCGTTTCA 57.339 32.000 0.00 0.00 41.54 2.69
2568 7997 9.556030 AATTTTACTGCTTCTAAATAGCGTTTC 57.444 29.630 0.00 0.00 41.54 2.78
2569 7998 9.908152 AAATTTTACTGCTTCTAAATAGCGTTT 57.092 25.926 0.00 0.00 41.54 3.60
2570 7999 9.341899 CAAATTTTACTGCTTCTAAATAGCGTT 57.658 29.630 0.00 0.00 41.54 4.84
2571 8000 8.512138 ACAAATTTTACTGCTTCTAAATAGCGT 58.488 29.630 0.00 0.00 41.54 5.07
2572 8001 8.895932 ACAAATTTTACTGCTTCTAAATAGCG 57.104 30.769 0.00 0.00 41.54 4.26
2634 8063 8.571453 GGTATGTCCAAGGCACAAAGTTTTGT 62.571 42.308 4.48 4.48 42.99 2.83
2635 8064 3.244033 TGTCCAAGGCACAAAGTTTTG 57.756 42.857 3.17 3.17 43.62 2.44
2636 8065 4.202212 GGTATGTCCAAGGCACAAAGTTTT 60.202 41.667 0.00 0.00 35.97 2.43
2637 8066 3.320826 GGTATGTCCAAGGCACAAAGTTT 59.679 43.478 0.00 0.00 35.97 2.66
2638 8067 2.890945 GGTATGTCCAAGGCACAAAGTT 59.109 45.455 0.00 0.00 35.97 2.66
2639 8068 2.108250 AGGTATGTCCAAGGCACAAAGT 59.892 45.455 0.00 0.00 39.02 2.66
2640 8069 2.795329 AGGTATGTCCAAGGCACAAAG 58.205 47.619 0.00 0.00 39.02 2.77
2641 8070 2.969821 AGGTATGTCCAAGGCACAAA 57.030 45.000 0.00 0.00 39.02 2.83
2642 8071 2.890311 CAAAGGTATGTCCAAGGCACAA 59.110 45.455 0.00 0.00 39.02 3.33
2643 8072 2.513753 CAAAGGTATGTCCAAGGCACA 58.486 47.619 0.00 0.00 39.02 4.57
2644 8073 1.202348 GCAAAGGTATGTCCAAGGCAC 59.798 52.381 0.00 0.00 39.02 5.01
2645 8074 1.544724 GCAAAGGTATGTCCAAGGCA 58.455 50.000 0.00 0.00 39.02 4.75
2646 8075 0.817654 GGCAAAGGTATGTCCAAGGC 59.182 55.000 0.00 0.00 39.02 4.35
2647 8076 2.214376 TGGCAAAGGTATGTCCAAGG 57.786 50.000 0.00 0.00 39.02 3.61
2648 8077 2.890311 TGTTGGCAAAGGTATGTCCAAG 59.110 45.455 0.00 0.00 37.25 3.61
2649 8078 2.950781 TGTTGGCAAAGGTATGTCCAA 58.049 42.857 0.00 0.00 39.02 3.53
2650 8079 2.666272 TGTTGGCAAAGGTATGTCCA 57.334 45.000 0.00 0.00 39.02 4.02
2651 8080 2.825532 ACATGTTGGCAAAGGTATGTCC 59.174 45.455 0.00 0.00 0.00 4.02
2652 8081 5.581605 CATACATGTTGGCAAAGGTATGTC 58.418 41.667 24.45 6.26 35.65 3.06
2653 8082 4.142182 GCATACATGTTGGCAAAGGTATGT 60.142 41.667 28.54 23.81 38.70 2.29
2654 8083 4.142204 TGCATACATGTTGGCAAAGGTATG 60.142 41.667 26.46 26.46 39.04 2.39
2655 8084 4.022603 TGCATACATGTTGGCAAAGGTAT 58.977 39.130 18.34 7.62 32.54 2.73
2656 8085 3.425659 TGCATACATGTTGGCAAAGGTA 58.574 40.909 18.34 5.44 32.54 3.08
2657 8086 2.246469 TGCATACATGTTGGCAAAGGT 58.754 42.857 18.34 3.10 32.54 3.50
2658 8087 3.530265 ATGCATACATGTTGGCAAAGG 57.470 42.857 22.65 0.26 40.02 3.11
2659 8088 7.542534 AAAATATGCATACATGTTGGCAAAG 57.457 32.000 22.65 0.00 37.64 2.77
2660 8089 7.918536 AAAAATATGCATACATGTTGGCAAA 57.081 28.000 22.65 6.17 37.64 3.68
2689 8118 9.145865 ACACGTTTTGTAATCTTCAAAAATTGT 57.854 25.926 5.59 8.42 43.27 2.71
2703 8132 7.813852 AATGTGCTTTTTACACGTTTTGTAA 57.186 28.000 0.00 0.00 46.93 2.41
2727 8156 4.275443 GCATCTGCACCCATTTTTCAAAAA 59.725 37.500 0.00 0.00 41.59 1.94
2728 8157 3.814283 GCATCTGCACCCATTTTTCAAAA 59.186 39.130 0.00 0.00 41.59 2.44
2729 8158 3.401182 GCATCTGCACCCATTTTTCAAA 58.599 40.909 0.00 0.00 41.59 2.69
2730 8159 2.289569 GGCATCTGCACCCATTTTTCAA 60.290 45.455 4.33 0.00 44.36 2.69
2731 8160 1.275856 GGCATCTGCACCCATTTTTCA 59.724 47.619 4.33 0.00 44.36 2.69
2732 8161 1.405933 GGGCATCTGCACCCATTTTTC 60.406 52.381 5.25 0.00 46.22 2.29
2733 8162 0.614812 GGGCATCTGCACCCATTTTT 59.385 50.000 5.25 0.00 46.22 1.94
2734 8163 2.289840 GGGCATCTGCACCCATTTT 58.710 52.632 5.25 0.00 46.22 1.82
2735 8164 4.039042 GGGCATCTGCACCCATTT 57.961 55.556 5.25 0.00 46.22 2.32
2741 8170 4.722700 ACACGGGGGCATCTGCAC 62.723 66.667 4.33 0.00 45.53 4.57
2742 8171 4.720902 CACACGGGGGCATCTGCA 62.721 66.667 4.33 0.00 44.36 4.41
2744 8173 4.720902 TGCACACGGGGGCATCTG 62.721 66.667 12.65 0.00 34.58 2.90
2745 8174 4.415150 CTGCACACGGGGGCATCT 62.415 66.667 18.73 0.00 39.65 2.90
2746 8175 3.704231 ATCTGCACACGGGGGCATC 62.704 63.158 18.73 0.00 39.65 3.91
2747 8176 3.704231 GATCTGCACACGGGGGCAT 62.704 63.158 18.73 0.00 39.65 4.40
2748 8177 4.408821 GATCTGCACACGGGGGCA 62.409 66.667 16.98 16.98 38.52 5.36
2750 8179 4.082523 ACGATCTGCACACGGGGG 62.083 66.667 0.00 0.00 0.00 5.40
2751 8180 2.815211 CACGATCTGCACACGGGG 60.815 66.667 0.00 0.00 0.00 5.73
2752 8181 3.490759 GCACGATCTGCACACGGG 61.491 66.667 10.95 4.34 46.29 5.28
2759 8188 4.198919 GGTTCATCCATGCACGATCTGC 62.199 54.545 9.41 9.41 40.32 4.26
2760 8189 1.600957 GGTTCATCCATGCACGATCTG 59.399 52.381 0.00 0.00 35.97 2.90
2761 8190 1.475751 GGGTTCATCCATGCACGATCT 60.476 52.381 0.00 0.00 38.11 2.75
2762 8191 0.947244 GGGTTCATCCATGCACGATC 59.053 55.000 0.00 0.00 38.11 3.69
2763 8192 0.815213 CGGGTTCATCCATGCACGAT 60.815 55.000 0.00 0.00 38.11 3.73
2764 8193 1.449423 CGGGTTCATCCATGCACGA 60.449 57.895 0.00 0.00 38.11 4.35
2765 8194 2.472059 CCGGGTTCATCCATGCACG 61.472 63.158 0.00 0.00 38.11 5.34
2766 8195 2.120909 CCCGGGTTCATCCATGCAC 61.121 63.158 14.18 0.00 38.11 4.57
2767 8196 1.275421 TACCCGGGTTCATCCATGCA 61.275 55.000 35.42 6.33 38.11 3.96
2768 8197 0.818040 GTACCCGGGTTCATCCATGC 60.818 60.000 35.42 3.07 38.11 4.06
2769 8198 0.544223 TGTACCCGGGTTCATCCATG 59.456 55.000 35.42 0.00 38.11 3.66
2770 8199 1.518367 ATGTACCCGGGTTCATCCAT 58.482 50.000 33.32 22.62 32.00 3.41
2771 8200 1.764134 GTATGTACCCGGGTTCATCCA 59.236 52.381 39.48 25.53 37.34 3.41
2772 8201 1.269936 CGTATGTACCCGGGTTCATCC 60.270 57.143 39.48 30.45 37.34 3.51
2773 8202 1.682854 TCGTATGTACCCGGGTTCATC 59.317 52.381 39.48 29.42 37.34 2.92
2774 8203 1.779221 TCGTATGTACCCGGGTTCAT 58.221 50.000 37.93 37.93 39.05 2.57
2775 8204 1.204467 GTTCGTATGTACCCGGGTTCA 59.796 52.381 35.42 33.49 0.00 3.18
2776 8205 1.471501 GGTTCGTATGTACCCGGGTTC 60.472 57.143 35.42 28.38 29.74 3.62
2777 8206 0.536724 GGTTCGTATGTACCCGGGTT 59.463 55.000 35.42 17.68 29.74 4.11
2778 8207 1.329913 GGGTTCGTATGTACCCGGGT 61.330 60.000 32.66 32.66 44.60 5.28
2779 8208 1.442987 GGGTTCGTATGTACCCGGG 59.557 63.158 22.25 22.25 44.60 5.73
2783 8212 3.004862 CCAAAGTGGGTTCGTATGTACC 58.995 50.000 2.18 2.18 34.96 3.34
2784 8213 3.929094 TCCAAAGTGGGTTCGTATGTAC 58.071 45.455 0.00 0.00 38.32 2.90
2785 8214 4.620589 TTCCAAAGTGGGTTCGTATGTA 57.379 40.909 0.00 0.00 38.32 2.29
2786 8215 3.495434 TTCCAAAGTGGGTTCGTATGT 57.505 42.857 0.00 0.00 38.32 2.29
2787 8216 4.036971 TGTTTTCCAAAGTGGGTTCGTATG 59.963 41.667 0.00 0.00 38.32 2.39
2788 8217 4.037089 GTGTTTTCCAAAGTGGGTTCGTAT 59.963 41.667 0.00 0.00 38.32 3.06
2789 8218 3.377798 GTGTTTTCCAAAGTGGGTTCGTA 59.622 43.478 0.00 0.00 38.32 3.43
2790 8219 2.164827 GTGTTTTCCAAAGTGGGTTCGT 59.835 45.455 0.00 0.00 38.32 3.85
2791 8220 2.164624 TGTGTTTTCCAAAGTGGGTTCG 59.835 45.455 0.00 0.00 38.32 3.95
2792 8221 3.878160 TGTGTTTTCCAAAGTGGGTTC 57.122 42.857 0.00 0.00 38.32 3.62
2793 8222 4.835284 AATGTGTTTTCCAAAGTGGGTT 57.165 36.364 0.00 0.00 38.32 4.11
2794 8223 4.835284 AAATGTGTTTTCCAAAGTGGGT 57.165 36.364 0.00 0.00 38.32 4.51
2795 8224 4.201901 GCAAAATGTGTTTTCCAAAGTGGG 60.202 41.667 0.00 0.00 38.32 4.61
2796 8225 4.394300 TGCAAAATGTGTTTTCCAAAGTGG 59.606 37.500 0.00 0.00 35.41 4.00
2797 8226 5.542616 TGCAAAATGTGTTTTCCAAAGTG 57.457 34.783 0.00 0.00 35.41 3.16
2798 8227 6.756299 ATTGCAAAATGTGTTTTCCAAAGT 57.244 29.167 1.71 0.00 38.19 2.66
2838 8267 0.040425 GATGTCCGCGCACACTTTTT 60.040 50.000 4.26 0.00 0.00 1.94
2839 8268 0.884704 AGATGTCCGCGCACACTTTT 60.885 50.000 4.26 0.00 0.00 2.27
2840 8269 0.884704 AAGATGTCCGCGCACACTTT 60.885 50.000 4.26 0.00 0.00 2.66
2841 8270 1.291877 GAAGATGTCCGCGCACACTT 61.292 55.000 4.26 11.32 0.00 3.16
2842 8271 1.738099 GAAGATGTCCGCGCACACT 60.738 57.895 4.26 1.78 0.00 3.55
2843 8272 1.361668 ATGAAGATGTCCGCGCACAC 61.362 55.000 4.26 0.00 0.00 3.82
2844 8273 0.174617 TATGAAGATGTCCGCGCACA 59.825 50.000 4.80 4.80 0.00 4.57
2845 8274 1.502231 ATATGAAGATGTCCGCGCAC 58.498 50.000 8.75 0.00 0.00 5.34
2846 8275 2.135139 GAATATGAAGATGTCCGCGCA 58.865 47.619 8.75 0.00 0.00 6.09
2847 8276 2.408050 AGAATATGAAGATGTCCGCGC 58.592 47.619 0.00 0.00 0.00 6.86
2848 8277 5.061435 CACATAGAATATGAAGATGTCCGCG 59.939 44.000 0.00 0.00 0.00 6.46
2849 8278 5.928839 ACACATAGAATATGAAGATGTCCGC 59.071 40.000 3.87 0.00 0.00 5.54
2850 8279 6.925718 ACACACATAGAATATGAAGATGTCCG 59.074 38.462 3.87 0.00 0.00 4.79
2851 8280 7.307632 GCACACACATAGAATATGAAGATGTCC 60.308 40.741 3.87 0.00 0.00 4.02
2852 8281 7.225341 TGCACACACATAGAATATGAAGATGTC 59.775 37.037 3.87 0.00 0.00 3.06
2853 8282 7.049754 TGCACACACATAGAATATGAAGATGT 58.950 34.615 3.87 0.00 0.00 3.06
2854 8283 7.440255 TCTGCACACACATAGAATATGAAGATG 59.560 37.037 3.87 0.00 0.00 2.90
2855 8284 7.503549 TCTGCACACACATAGAATATGAAGAT 58.496 34.615 3.87 0.00 0.00 2.40
2856 8285 6.877236 TCTGCACACACATAGAATATGAAGA 58.123 36.000 3.87 0.00 0.00 2.87
2857 8286 7.543947 TTCTGCACACACATAGAATATGAAG 57.456 36.000 3.87 0.00 0.00 3.02
2858 8287 7.607607 ACTTTCTGCACACACATAGAATATGAA 59.392 33.333 3.87 0.00 0.00 2.57
2859 8288 7.105588 ACTTTCTGCACACACATAGAATATGA 58.894 34.615 3.87 0.00 0.00 2.15
2860 8289 7.312657 ACTTTCTGCACACACATAGAATATG 57.687 36.000 0.00 0.00 0.00 1.78
2861 8290 7.928307 AACTTTCTGCACACACATAGAATAT 57.072 32.000 0.00 0.00 0.00 1.28
2862 8291 7.443879 TGAAACTTTCTGCACACACATAGAATA 59.556 33.333 3.22 0.00 0.00 1.75
2863 8292 6.262944 TGAAACTTTCTGCACACACATAGAAT 59.737 34.615 3.22 0.00 0.00 2.40
2864 8293 5.588246 TGAAACTTTCTGCACACACATAGAA 59.412 36.000 3.22 0.00 0.00 2.10
2865 8294 5.122519 TGAAACTTTCTGCACACACATAGA 58.877 37.500 3.22 0.00 0.00 1.98
2866 8295 5.422666 TGAAACTTTCTGCACACACATAG 57.577 39.130 3.22 0.00 0.00 2.23
2867 8296 6.934083 TCTATGAAACTTTCTGCACACACATA 59.066 34.615 3.22 0.00 0.00 2.29
2868 8297 4.924305 ATGAAACTTTCTGCACACACAT 57.076 36.364 3.22 0.00 0.00 3.21
2869 8298 5.122519 TCTATGAAACTTTCTGCACACACA 58.877 37.500 3.22 0.00 0.00 3.72
2870 8299 5.673337 TCTATGAAACTTTCTGCACACAC 57.327 39.130 3.22 0.00 0.00 3.82
2871 8300 6.691754 TTTCTATGAAACTTTCTGCACACA 57.308 33.333 3.22 0.00 0.00 3.72
2872 8301 7.985634 TTTTTCTATGAAACTTTCTGCACAC 57.014 32.000 3.22 0.00 0.00 3.82
2875 8304 9.691362 GGTTATTTTTCTATGAAACTTTCTGCA 57.309 29.630 3.22 0.00 0.00 4.41
2876 8305 9.914131 AGGTTATTTTTCTATGAAACTTTCTGC 57.086 29.630 3.22 0.00 0.00 4.26
2903 8332 4.312443 GGAGTGTGGACGATCTACAAAAA 58.688 43.478 5.94 0.00 39.57 1.94
2904 8333 3.306502 GGGAGTGTGGACGATCTACAAAA 60.307 47.826 5.94 0.00 39.57 2.44
2905 8334 2.232941 GGGAGTGTGGACGATCTACAAA 59.767 50.000 5.94 0.00 39.57 2.83
2906 8335 1.822990 GGGAGTGTGGACGATCTACAA 59.177 52.381 5.94 0.00 39.57 2.41
2907 8336 1.471119 GGGAGTGTGGACGATCTACA 58.529 55.000 0.00 0.00 35.44 2.74
2908 8337 0.381089 CGGGAGTGTGGACGATCTAC 59.619 60.000 0.00 0.00 0.00 2.59
2909 8338 0.034767 ACGGGAGTGTGGACGATCTA 60.035 55.000 0.00 0.00 44.82 1.98
2910 8339 1.304217 ACGGGAGTGTGGACGATCT 60.304 57.895 0.00 0.00 44.82 2.75
2911 8340 3.285371 ACGGGAGTGTGGACGATC 58.715 61.111 0.00 0.00 44.82 3.69
2922 8351 0.038159 AAAGAGCGTGAAGACGGGAG 60.038 55.000 0.00 0.00 46.20 4.30
2923 8352 0.391597 AAAAGAGCGTGAAGACGGGA 59.608 50.000 0.00 0.00 46.20 5.14
2924 8353 2.074547 TAAAAGAGCGTGAAGACGGG 57.925 50.000 0.00 0.00 46.20 5.28
2936 8365 1.327764 GAGCGCAACGGGATAAAAGAG 59.672 52.381 11.47 0.00 0.00 2.85
2937 8366 1.066430 AGAGCGCAACGGGATAAAAGA 60.066 47.619 11.47 0.00 0.00 2.52
2960 8389 4.872357 CCAGAAGATGGCGCAGAT 57.128 55.556 10.83 0.00 43.83 2.90
2990 8419 4.329545 GAACAGACGCCTGGCCCA 62.330 66.667 14.12 0.00 44.60 5.36
2994 8423 0.671781 CAGAAGGAACAGACGCCTGG 60.672 60.000 3.10 0.00 44.60 4.45
3035 8464 0.466124 GTCATGACCTGGCCTACTCC 59.534 60.000 15.31 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.