Multiple sequence alignment - TraesCS4A01G008300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G008300 chr4A 100.000 5005 0 0 1 5005 5064396 5069400 0.000000e+00 9243.0
1 TraesCS4A01G008300 chr4D 87.268 2537 166 64 1 2486 465364397 465361967 0.000000e+00 2750.0
2 TraesCS4A01G008300 chr4D 94.655 1422 55 13 2483 3898 465361776 465360370 0.000000e+00 2185.0
3 TraesCS4A01G008300 chr4B 94.976 1433 44 15 2483 3897 582117218 582115796 0.000000e+00 2222.0
4 TraesCS4A01G008300 chr4B 92.876 1109 56 11 1382 2486 582118465 582117376 0.000000e+00 1589.0
5 TraesCS4A01G008300 chr4B 100.000 30 0 0 4372 4401 582115081 582115052 7.000000e-04 56.5
6 TraesCS4A01G008300 chr5B 91.385 592 31 10 1061 1643 664904580 664904000 0.000000e+00 793.0
7 TraesCS4A01G008300 chr1B 89.713 593 58 3 4412 5002 575745597 575746188 0.000000e+00 754.0
8 TraesCS4A01G008300 chr1B 97.143 35 1 0 967 1001 254135074 254135108 5.410000e-05 60.2
9 TraesCS4A01G008300 chr3D 89.280 597 54 8 4412 5002 393663289 393662697 0.000000e+00 739.0
10 TraesCS4A01G008300 chr3D 87.690 593 67 6 4412 5002 366228108 366228696 0.000000e+00 686.0
11 TraesCS4A01G008300 chr7D 88.699 584 60 6 4421 5002 49794103 49794682 0.000000e+00 708.0
12 TraesCS4A01G008300 chr7D 88.621 580 60 6 4425 5002 141564439 141563864 0.000000e+00 701.0
13 TraesCS4A01G008300 chr7D 88.205 585 62 7 4421 5002 599801171 599800591 0.000000e+00 691.0
14 TraesCS4A01G008300 chr6A 88.364 593 63 6 4412 5002 133646923 133646335 0.000000e+00 708.0
15 TraesCS4A01G008300 chr2D 88.376 585 60 8 4421 5002 38785943 38786522 0.000000e+00 697.0
16 TraesCS4A01G008300 chr2D 96.875 32 1 0 971 1002 42441654 42441623 3.000000e-03 54.7
17 TraesCS4A01G008300 chr7B 87.690 593 67 6 4412 5002 133481968 133482556 0.000000e+00 686.0
18 TraesCS4A01G008300 chr7B 78.092 283 48 8 2035 2306 534818040 534817761 3.100000e-37 167.0
19 TraesCS4A01G008300 chr2B 79.958 474 72 13 311 770 175535327 175534863 1.340000e-85 327.0
20 TraesCS4A01G008300 chr7A 81.017 295 43 7 2035 2319 574083738 574083447 6.520000e-54 222.0
21 TraesCS4A01G008300 chr3B 100.000 32 0 0 970 1001 321703206 321703175 5.410000e-05 60.2
22 TraesCS4A01G008300 chr3B 100.000 32 0 0 970 1001 748316175 748316144 5.410000e-05 60.2
23 TraesCS4A01G008300 chr3B 100.000 31 0 0 971 1001 321703199 321703169 1.950000e-04 58.4
24 TraesCS4A01G008300 chr6B 100.000 31 0 0 971 1001 33401408 33401378 1.950000e-04 58.4
25 TraesCS4A01G008300 chr6B 100.000 30 0 0 972 1001 33401413 33401384 7.000000e-04 56.5
26 TraesCS4A01G008300 chr3A 100.000 31 0 0 969 999 57812081 57812051 1.950000e-04 58.4
27 TraesCS4A01G008300 chr1A 100.000 29 0 0 971 999 500476275 500476303 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G008300 chr4A 5064396 5069400 5004 False 9243.000000 9243 100.000000 1 5005 1 chr4A.!!$F1 5004
1 TraesCS4A01G008300 chr4D 465360370 465364397 4027 True 2467.500000 2750 90.961500 1 3898 2 chr4D.!!$R1 3897
2 TraesCS4A01G008300 chr4B 582115052 582118465 3413 True 1289.166667 2222 95.950667 1382 4401 3 chr4B.!!$R1 3019
3 TraesCS4A01G008300 chr5B 664904000 664904580 580 True 793.000000 793 91.385000 1061 1643 1 chr5B.!!$R1 582
4 TraesCS4A01G008300 chr1B 575745597 575746188 591 False 754.000000 754 89.713000 4412 5002 1 chr1B.!!$F2 590
5 TraesCS4A01G008300 chr3D 393662697 393663289 592 True 739.000000 739 89.280000 4412 5002 1 chr3D.!!$R1 590
6 TraesCS4A01G008300 chr3D 366228108 366228696 588 False 686.000000 686 87.690000 4412 5002 1 chr3D.!!$F1 590
7 TraesCS4A01G008300 chr7D 49794103 49794682 579 False 708.000000 708 88.699000 4421 5002 1 chr7D.!!$F1 581
8 TraesCS4A01G008300 chr7D 141563864 141564439 575 True 701.000000 701 88.621000 4425 5002 1 chr7D.!!$R1 577
9 TraesCS4A01G008300 chr7D 599800591 599801171 580 True 691.000000 691 88.205000 4421 5002 1 chr7D.!!$R2 581
10 TraesCS4A01G008300 chr6A 133646335 133646923 588 True 708.000000 708 88.364000 4412 5002 1 chr6A.!!$R1 590
11 TraesCS4A01G008300 chr2D 38785943 38786522 579 False 697.000000 697 88.376000 4421 5002 1 chr2D.!!$F1 581
12 TraesCS4A01G008300 chr7B 133481968 133482556 588 False 686.000000 686 87.690000 4412 5002 1 chr7B.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 556 0.107654 GAAACCCTCAGATCCACCCG 60.108 60.0 0.0 0.0 0.00 5.28 F
638 656 0.608035 TTTTAGGGCAGCGGTTGGAG 60.608 55.0 0.0 0.0 0.00 3.86 F
1971 2012 0.390492 GCTTTTCTGCTTGTTGGGCT 59.610 50.0 0.0 0.0 0.00 5.19 F
1974 2015 2.888834 TTTCTGCTTGTTGGGCTTTC 57.111 45.0 0.0 0.0 0.00 2.62 F
2860 3103 0.037232 GAGTTACCGAAGTGGCAGCT 60.037 55.0 0.0 0.0 43.94 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1548 0.679002 CCAGAAGCACATCACAGGGG 60.679 60.0 0.00 0.0 0.00 4.79 R
2017 2058 1.418908 CCACAGTTGGGGGTGAGTCT 61.419 60.0 0.00 0.0 39.57 3.24 R
2841 3084 0.037232 AGCTGCCACTTCGGTAACTC 60.037 55.0 0.00 0.0 36.97 3.01 R
3373 3626 0.183492 TCAGAGCCTGTTGTTTGCCT 59.817 50.0 2.68 0.0 32.61 4.75 R
4719 5249 0.030101 ACCATTGCACACGGTTTTCG 59.970 50.0 0.00 0.0 45.88 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.017048 TGGTCATCCTAATTTGCTGGG 57.983 47.619 0.00 0.00 34.23 4.45
23 24 2.952310 GGTCATCCTAATTTGCTGGGAC 59.048 50.000 0.00 0.00 0.00 4.46
27 28 5.827797 GTCATCCTAATTTGCTGGGACATAA 59.172 40.000 0.00 0.00 38.20 1.90
28 29 6.491403 GTCATCCTAATTTGCTGGGACATAAT 59.509 38.462 0.00 0.00 38.20 1.28
30 31 7.665559 TCATCCTAATTTGCTGGGACATAATAC 59.334 37.037 0.00 0.00 38.20 1.89
31 32 7.149202 TCCTAATTTGCTGGGACATAATACT 57.851 36.000 0.00 0.00 38.20 2.12
36 37 3.384168 TGCTGGGACATAATACTGGAGT 58.616 45.455 0.00 0.00 38.20 3.85
45 46 7.201582 GGGACATAATACTGGAGTTAAACAACG 60.202 40.741 0.00 0.00 0.00 4.10
48 49 7.874016 ACATAATACTGGAGTTAAACAACGACA 59.126 33.333 0.00 0.00 0.00 4.35
77 78 2.700897 AGGAAATGTCCCCTCTATCACG 59.299 50.000 0.00 0.00 46.30 4.35
80 81 3.821421 AATGTCCCCTCTATCACGAAC 57.179 47.619 0.00 0.00 0.00 3.95
111 112 4.323868 GGGCTTTCAGGTCAAATCTAGAGT 60.324 45.833 0.00 0.00 0.00 3.24
112 113 4.633565 GGCTTTCAGGTCAAATCTAGAGTG 59.366 45.833 0.00 0.00 0.00 3.51
126 127 3.542629 GAGTGTTGGTGCCTTGCGC 62.543 63.158 0.00 0.00 38.45 6.09
141 142 1.582424 GCGCGCGTCAAATGCATTA 60.582 52.632 32.35 0.00 0.00 1.90
150 151 3.067180 CGTCAAATGCATTAAGAGCCCAT 59.933 43.478 13.39 0.00 0.00 4.00
153 154 4.710865 TCAAATGCATTAAGAGCCCATTCA 59.289 37.500 13.39 0.00 0.00 2.57
155 156 3.650281 TGCATTAAGAGCCCATTCAGA 57.350 42.857 0.79 0.00 0.00 3.27
162 163 2.652590 AGAGCCCATTCAGAGATTTGC 58.347 47.619 0.00 0.00 0.00 3.68
186 187 6.073331 GCTGTCAGATTATCCATTTAGCAGTC 60.073 42.308 3.32 0.00 0.00 3.51
191 192 5.305644 AGATTATCCATTTAGCAGTCGGTCT 59.694 40.000 0.00 0.00 0.00 3.85
194 195 5.552870 ATCCATTTAGCAGTCGGTCTAAT 57.447 39.130 0.00 0.00 0.00 1.73
206 210 4.080863 AGTCGGTCTAATGGCTTCTTTCAT 60.081 41.667 0.00 0.00 0.00 2.57
233 237 8.680903 CACTTGTTTCATGCTATTCTCCTAAAT 58.319 33.333 0.00 0.00 0.00 1.40
234 238 8.897752 ACTTGTTTCATGCTATTCTCCTAAATC 58.102 33.333 0.00 0.00 0.00 2.17
243 247 8.985315 TGCTATTCTCCTAAATCAATGAATGT 57.015 30.769 0.00 0.00 0.00 2.71
244 248 8.843262 TGCTATTCTCCTAAATCAATGAATGTG 58.157 33.333 0.00 0.00 0.00 3.21
246 250 9.565090 CTATTCTCCTAAATCAATGAATGTGGA 57.435 33.333 0.00 0.00 0.00 4.02
249 253 9.565090 TTCTCCTAAATCAATGAATGTGGATAG 57.435 33.333 0.00 0.00 0.00 2.08
263 267 3.326006 TGTGGATAGGATGCTGGATCTTC 59.674 47.826 9.08 4.41 0.00 2.87
265 269 2.909006 GGATAGGATGCTGGATCTTCCA 59.091 50.000 9.08 0.00 45.98 3.53
292 296 8.693542 AAAAATATGCCATTTTTCTCTCTTCG 57.306 30.769 11.20 0.00 36.76 3.79
294 298 8.506168 AAATATGCCATTTTTCTCTCTTCGTA 57.494 30.769 0.00 0.00 0.00 3.43
295 299 7.721286 ATATGCCATTTTTCTCTCTTCGTAG 57.279 36.000 0.00 0.00 0.00 3.51
296 300 5.147330 TGCCATTTTTCTCTCTTCGTAGA 57.853 39.130 0.00 0.00 0.00 2.59
297 301 5.547465 TGCCATTTTTCTCTCTTCGTAGAA 58.453 37.500 0.00 0.00 45.90 2.10
339 354 8.437742 GCATCTCCAACAACATTTCTATTTTTG 58.562 33.333 0.00 0.00 0.00 2.44
340 355 8.928733 CATCTCCAACAACATTTCTATTTTTGG 58.071 33.333 0.00 0.00 34.72 3.28
341 356 6.928492 TCTCCAACAACATTTCTATTTTTGGC 59.072 34.615 0.00 0.00 33.65 4.52
343 358 5.762218 CCAACAACATTTCTATTTTTGGCCA 59.238 36.000 0.00 0.00 0.00 5.36
344 359 6.293353 CCAACAACATTTCTATTTTTGGCCAC 60.293 38.462 3.88 0.00 0.00 5.01
348 363 5.490159 ACATTTCTATTTTTGGCCACATGG 58.510 37.500 3.88 0.00 38.53 3.66
362 377 1.333619 CACATGGCGTATTTAGGGCAC 59.666 52.381 8.44 0.00 46.73 5.01
363 378 1.065053 ACATGGCGTATTTAGGGCACA 60.065 47.619 8.44 0.00 46.73 4.57
364 379 1.603802 CATGGCGTATTTAGGGCACAG 59.396 52.381 8.44 2.31 46.73 3.66
386 401 1.971418 GGCAAAAATCGGCCTCCAA 59.029 52.632 0.00 0.00 46.74 3.53
387 402 0.389817 GGCAAAAATCGGCCTCCAAC 60.390 55.000 0.00 0.00 46.74 3.77
389 404 1.270041 GCAAAAATCGGCCTCCAACAA 60.270 47.619 0.00 0.00 0.00 2.83
400 415 1.619654 CTCCAACAACTGCCCAATCA 58.380 50.000 0.00 0.00 0.00 2.57
402 417 1.894466 TCCAACAACTGCCCAATCATG 59.106 47.619 0.00 0.00 0.00 3.07
406 421 3.947910 ACAACTGCCCAATCATGAAAG 57.052 42.857 0.00 0.00 0.00 2.62
407 422 3.499338 ACAACTGCCCAATCATGAAAGA 58.501 40.909 0.00 0.00 0.00 2.52
408 423 3.896888 ACAACTGCCCAATCATGAAAGAA 59.103 39.130 0.00 0.00 0.00 2.52
409 424 4.344679 ACAACTGCCCAATCATGAAAGAAA 59.655 37.500 0.00 0.00 0.00 2.52
410 425 5.012354 ACAACTGCCCAATCATGAAAGAAAT 59.988 36.000 0.00 0.00 0.00 2.17
411 426 5.750352 ACTGCCCAATCATGAAAGAAATT 57.250 34.783 0.00 0.00 0.00 1.82
453 469 0.108585 AAAAGAGGCTCCTCGTGCAA 59.891 50.000 11.71 0.00 46.90 4.08
467 483 2.942376 TCGTGCAACAAATATAGGGCAG 59.058 45.455 0.00 0.00 35.74 4.85
472 488 2.878406 CAACAAATATAGGGCAGTCGGG 59.122 50.000 0.00 0.00 0.00 5.14
487 503 3.056328 GGGCGGCTGTCCAGAAAC 61.056 66.667 12.53 0.00 40.65 2.78
506 522 2.048222 CGAGGCTGCTTCCGAACA 60.048 61.111 6.16 0.00 0.00 3.18
509 525 2.032681 GGCTGCTTCCGAACACCT 59.967 61.111 0.00 0.00 0.00 4.00
513 529 3.056328 GCTTCCGAACACCTGCCC 61.056 66.667 0.00 0.00 0.00 5.36
530 546 2.429930 CGTGGCCAGAAACCCTCA 59.570 61.111 5.11 0.00 0.00 3.86
531 547 1.672356 CGTGGCCAGAAACCCTCAG 60.672 63.158 5.11 0.00 0.00 3.35
533 549 0.329596 GTGGCCAGAAACCCTCAGAT 59.670 55.000 5.11 0.00 0.00 2.90
536 552 0.620556 GCCAGAAACCCTCAGATCCA 59.379 55.000 0.00 0.00 0.00 3.41
539 555 1.065126 CAGAAACCCTCAGATCCACCC 60.065 57.143 0.00 0.00 0.00 4.61
540 556 0.107654 GAAACCCTCAGATCCACCCG 60.108 60.000 0.00 0.00 0.00 5.28
541 557 2.198304 AAACCCTCAGATCCACCCGC 62.198 60.000 0.00 0.00 0.00 6.13
574 592 2.765807 CCATGGTCGGCTCCTCCT 60.766 66.667 2.57 0.00 0.00 3.69
582 600 4.862823 GGCTCCTCCTACCCCGCT 62.863 72.222 0.00 0.00 0.00 5.52
596 614 2.645567 CGCTGCCGACCTCGATAT 59.354 61.111 0.00 0.00 43.02 1.63
597 615 1.583495 CCGCTGCCGACCTCGATATA 61.583 60.000 0.00 0.00 43.02 0.86
624 642 2.150397 CGACTCCCGCCCTATTTTAG 57.850 55.000 0.00 0.00 0.00 1.85
638 656 0.608035 TTTTAGGGCAGCGGTTGGAG 60.608 55.000 0.00 0.00 0.00 3.86
642 660 4.043200 GGCAGCGGTTGGAGCAAC 62.043 66.667 0.00 0.00 42.89 4.17
660 678 3.524541 CAACTTTGCCCTATTTCATGCC 58.475 45.455 0.00 0.00 0.00 4.40
665 683 4.630644 TTGCCCTATTTCATGCCAAAAA 57.369 36.364 0.00 0.00 0.00 1.94
696 714 1.134401 TGCTGTATTACAGGGCTGCTC 60.134 52.381 22.11 0.00 46.01 4.26
698 716 2.804933 GCTGTATTACAGGGCTGCTCTC 60.805 54.545 22.11 2.15 46.01 3.20
797 819 9.748708 TCAAGAAATAAAAAGAGATTGGTGTTG 57.251 29.630 0.00 0.00 0.00 3.33
798 820 8.981647 CAAGAAATAAAAAGAGATTGGTGTTGG 58.018 33.333 0.00 0.00 0.00 3.77
799 821 8.477419 AGAAATAAAAAGAGATTGGTGTTGGA 57.523 30.769 0.00 0.00 0.00 3.53
800 822 8.579863 AGAAATAAAAAGAGATTGGTGTTGGAG 58.420 33.333 0.00 0.00 0.00 3.86
801 823 6.840780 ATAAAAAGAGATTGGTGTTGGAGG 57.159 37.500 0.00 0.00 0.00 4.30
827 849 1.003118 TGAATTCCACTTCCACTCCCG 59.997 52.381 2.27 0.00 0.00 5.14
848 870 1.138671 GTGGAGAGCGAGACAGAGC 59.861 63.158 0.00 0.00 0.00 4.09
856 878 1.730451 GCGAGACAGAGCTAGGGTCC 61.730 65.000 7.94 0.00 31.99 4.46
915 943 0.801251 CTTCTTCTTGCGGCAGAAGG 59.199 55.000 26.78 16.25 46.88 3.46
974 1002 3.050275 GAGGTCACACAAGCCCGC 61.050 66.667 0.00 0.00 0.00 6.13
975 1003 3.825160 GAGGTCACACAAGCCCGCA 62.825 63.158 0.00 0.00 0.00 5.69
976 1004 3.660111 GGTCACACAAGCCCGCAC 61.660 66.667 0.00 0.00 0.00 5.34
977 1005 3.660111 GTCACACAAGCCCGCACC 61.660 66.667 0.00 0.00 0.00 5.01
978 1006 4.947147 TCACACAAGCCCGCACCC 62.947 66.667 0.00 0.00 0.00 4.61
1010 1038 1.961277 CACCCGCACAACAGAGACC 60.961 63.158 0.00 0.00 0.00 3.85
1024 1052 3.695606 GACCCAGAGCAGGCGACA 61.696 66.667 0.00 0.00 0.00 4.35
1029 1057 4.363990 AGAGCAGGCGACACACCG 62.364 66.667 0.00 0.00 0.00 4.94
1203 1243 0.900647 CCCCCTAGTAGATCTGCGGG 60.901 65.000 14.40 14.40 37.71 6.13
1361 1401 1.737008 GAAAGTCCCGGTGAGTCGC 60.737 63.158 0.00 0.00 0.00 5.19
1451 1491 0.796870 GCGCCCGATTTGTTTACTGC 60.797 55.000 0.00 0.00 0.00 4.40
1456 1496 2.223249 CCCGATTTGTTTACTGCCGATG 60.223 50.000 0.00 0.00 0.00 3.84
1485 1525 7.287005 TGAGAGGTTTACCTGTATGTATACCTG 59.713 40.741 15.10 0.00 46.54 4.00
1486 1526 7.359849 AGAGGTTTACCTGTATGTATACCTGA 58.640 38.462 15.10 0.00 46.54 3.86
1521 1561 0.392336 TTTTTGCCCCTGTGATGTGC 59.608 50.000 0.00 0.00 0.00 4.57
1631 1671 0.751643 ACAGGTTTGGTCACTGTGCC 60.752 55.000 2.12 8.48 43.29 5.01
1732 1772 2.159310 TGGTTTGTTCTTTGCGAGTTGG 60.159 45.455 0.00 0.00 0.00 3.77
1742 1782 1.026182 TGCGAGTTGGTGATGGATGC 61.026 55.000 0.00 0.00 0.00 3.91
1763 1803 3.734902 GCTTGCTTTTGTGTGTGTTAGCT 60.735 43.478 0.00 0.00 0.00 3.32
1812 1852 6.507023 ACTAGCATTTTTGACACTTTGGAAG 58.493 36.000 0.00 0.00 0.00 3.46
1932 1973 6.151691 CGATGATGGATGTGTTTTTCTTTGT 58.848 36.000 0.00 0.00 0.00 2.83
1962 2003 2.620585 GAGTGAGGTTTGCTTTTCTGCT 59.379 45.455 0.00 0.00 0.00 4.24
1971 2012 0.390492 GCTTTTCTGCTTGTTGGGCT 59.610 50.000 0.00 0.00 0.00 5.19
1974 2015 2.888834 TTTCTGCTTGTTGGGCTTTC 57.111 45.000 0.00 0.00 0.00 2.62
2008 2049 6.417930 TGATCTCGAATAGTATTTGCGAGTTG 59.582 38.462 23.02 8.58 46.05 3.16
2017 2058 3.951775 ATTTGCGAGTTGGCCAAAATA 57.048 38.095 22.47 2.18 0.00 1.40
2065 2106 4.439449 GCTACGATATGAGCGCAGATAATC 59.561 45.833 11.47 4.94 0.00 1.75
2385 2426 8.827677 GCTAGTTGTTTATATTTTGGACGAGAT 58.172 33.333 0.00 0.00 0.00 2.75
2398 2440 5.300411 TGGACGAGATACTGGATAGTGTA 57.700 43.478 0.00 0.00 37.78 2.90
2399 2441 5.877491 TGGACGAGATACTGGATAGTGTAT 58.123 41.667 0.00 0.00 37.78 2.29
2400 2442 7.012661 TGGACGAGATACTGGATAGTGTATA 57.987 40.000 0.00 0.00 37.78 1.47
2401 2443 6.877855 TGGACGAGATACTGGATAGTGTATAC 59.122 42.308 0.00 0.00 37.78 1.47
2402 2444 7.104939 GGACGAGATACTGGATAGTGTATACT 58.895 42.308 4.17 0.00 37.78 2.12
2536 2776 3.821033 CCACTACCCTTTCTTTCCTTGTG 59.179 47.826 0.00 0.00 0.00 3.33
2545 2785 5.278169 CCTTTCTTTCCTTGTGAGTGTGATG 60.278 44.000 0.00 0.00 0.00 3.07
2548 2789 5.924356 TCTTTCCTTGTGAGTGTGATGTAA 58.076 37.500 0.00 0.00 0.00 2.41
2556 2797 6.121776 TGTGAGTGTGATGTAATTAGGGTT 57.878 37.500 0.00 0.00 0.00 4.11
2624 2866 6.239714 CCTTGCTAGTGTGATATGATTAGGGT 60.240 42.308 0.00 0.00 0.00 4.34
2693 2936 7.977853 GCTGTTCATTGATGTTGAATATCCTTT 59.022 33.333 0.00 0.00 35.68 3.11
2694 2937 9.865321 CTGTTCATTGATGTTGAATATCCTTTT 57.135 29.630 0.00 0.00 35.68 2.27
2829 3072 5.721232 GGTATCACACCTTATCCTTATCCG 58.279 45.833 0.00 0.00 44.79 4.18
2841 3084 7.012421 CCTTATCCTTATCCGAGTTCCTTTTTG 59.988 40.741 0.00 0.00 0.00 2.44
2860 3103 0.037232 GAGTTACCGAAGTGGCAGCT 60.037 55.000 0.00 0.00 43.94 4.24
3015 3258 9.953565 TTGTAGTGTTAGACCAATTAGCTTAAT 57.046 29.630 0.00 0.00 0.00 1.40
3078 3321 2.042979 AGTTGCCATGGTCTTGGGTTAT 59.957 45.455 14.67 0.00 37.24 1.89
3157 3400 8.927675 TGGACACAAGGTATACAGTAATTTTT 57.072 30.769 5.01 0.00 0.00 1.94
3234 3487 6.104146 TGTCTTATGTGTAGCAAACCACTA 57.896 37.500 0.00 0.00 32.76 2.74
3245 3498 5.248870 AGCAAACCACTAACAAGTTCTTG 57.751 39.130 10.50 10.50 0.00 3.02
3329 3582 0.178068 GAAGGATAGCCCGCAGTTCA 59.822 55.000 0.00 0.00 40.87 3.18
3373 3626 4.564782 AAATGCACATCTTCTCCTCTCA 57.435 40.909 0.00 0.00 0.00 3.27
3381 3634 2.329267 TCTTCTCCTCTCAGGCAAACA 58.671 47.619 0.00 0.00 34.61 2.83
3453 3706 7.978982 TCTTAGCTTGAAGAGATATTTTGTGC 58.021 34.615 0.00 0.00 31.72 4.57
3469 3722 4.911514 TTGTGCTCTTTCCTTTTGGTAC 57.088 40.909 0.00 0.00 41.38 3.34
3483 3736 8.388656 TCCTTTTGGTACTCTCCACTAATATT 57.611 34.615 0.00 0.00 41.38 1.28
3506 3759 7.451501 TTTTATCATGTGTTCTCAGATTGCA 57.548 32.000 0.00 0.00 0.00 4.08
3507 3760 6.673154 TTATCATGTGTTCTCAGATTGCAG 57.327 37.500 0.00 0.00 0.00 4.41
3567 3820 3.005578 GGCTACCGAGATCGAGGTAAATT 59.994 47.826 18.53 0.98 41.87 1.82
3583 3837 5.903010 AGGTAAATTCACAAGTCCCCTTTTT 59.097 36.000 0.00 0.00 0.00 1.94
3638 3894 8.612619 GTGGTGTTTATATCAATACCTTGTGAG 58.387 37.037 14.45 0.00 38.45 3.51
3745 4001 3.915010 GCGCGACTGAGCTATGAG 58.085 61.111 12.10 0.00 37.97 2.90
3746 4002 1.356979 GCGCGACTGAGCTATGAGA 59.643 57.895 12.10 0.00 37.97 3.27
3747 4003 0.932585 GCGCGACTGAGCTATGAGAC 60.933 60.000 12.10 0.00 37.97 3.36
3748 4004 0.660488 CGCGACTGAGCTATGAGACT 59.340 55.000 0.00 0.00 34.40 3.24
3762 4022 2.964740 TGAGACTGTAGCTGTCAATGC 58.035 47.619 0.00 0.00 35.30 3.56
3898 4158 1.268352 TGTGGTTGAATTTGCTACGGC 59.732 47.619 0.00 0.00 39.26 5.68
3900 4160 2.745281 GTGGTTGAATTTGCTACGGCTA 59.255 45.455 0.00 0.00 39.59 3.93
3904 4199 5.034797 GGTTGAATTTGCTACGGCTATTTC 58.965 41.667 0.00 0.00 39.59 2.17
3914 4209 5.471116 TGCTACGGCTATTTCTATCGTCTTA 59.529 40.000 0.00 0.00 39.59 2.10
3915 4210 6.016860 TGCTACGGCTATTTCTATCGTCTTAA 60.017 38.462 0.00 0.00 39.59 1.85
3929 4224 7.991460 TCTATCGTCTTAACCTGTCTCAGATTA 59.009 37.037 0.00 0.00 32.44 1.75
3941 4236 0.251634 TCAGATTATGTGGTGCCGCA 59.748 50.000 6.95 6.95 40.92 5.69
3943 4238 1.094785 AGATTATGTGGTGCCGCAAC 58.905 50.000 8.64 0.00 40.01 4.17
3959 4254 3.820689 CGCAACGGATTTTGAGATTCAA 58.179 40.909 0.00 0.00 34.03 2.69
3960 4255 3.848019 CGCAACGGATTTTGAGATTCAAG 59.152 43.478 0.00 0.00 37.70 3.02
3963 4258 5.691754 GCAACGGATTTTGAGATTCAAGTTT 59.308 36.000 0.00 0.00 37.70 2.66
3964 4259 6.346040 GCAACGGATTTTGAGATTCAAGTTTG 60.346 38.462 0.00 0.00 37.70 2.93
3965 4260 5.772521 ACGGATTTTGAGATTCAAGTTTGG 58.227 37.500 0.00 0.00 37.70 3.28
3966 4261 5.301805 ACGGATTTTGAGATTCAAGTTTGGT 59.698 36.000 0.00 0.00 37.70 3.67
3967 4262 5.858581 CGGATTTTGAGATTCAAGTTTGGTC 59.141 40.000 0.00 0.00 37.70 4.02
3968 4263 6.514870 CGGATTTTGAGATTCAAGTTTGGTCA 60.515 38.462 0.00 0.00 37.70 4.02
3969 4264 7.381323 GGATTTTGAGATTCAAGTTTGGTCAT 58.619 34.615 0.00 0.00 37.70 3.06
3970 4265 7.543520 GGATTTTGAGATTCAAGTTTGGTCATC 59.456 37.037 0.00 0.00 37.70 2.92
3971 4266 6.957920 TTTGAGATTCAAGTTTGGTCATCA 57.042 33.333 0.00 0.00 37.70 3.07
3972 4267 6.957920 TTGAGATTCAAGTTTGGTCATCAA 57.042 33.333 0.00 0.00 31.83 2.57
3973 4268 7.528996 TTGAGATTCAAGTTTGGTCATCAAT 57.471 32.000 0.00 0.00 32.00 2.57
3974 4269 7.528996 TGAGATTCAAGTTTGGTCATCAATT 57.471 32.000 0.00 0.00 34.98 2.32
3975 4270 7.954835 TGAGATTCAAGTTTGGTCATCAATTT 58.045 30.769 0.00 0.00 34.98 1.82
3976 4271 9.076781 TGAGATTCAAGTTTGGTCATCAATTTA 57.923 29.630 0.00 0.00 34.98 1.40
3977 4272 9.565213 GAGATTCAAGTTTGGTCATCAATTTAG 57.435 33.333 0.00 0.00 34.98 1.85
3978 4273 8.031277 AGATTCAAGTTTGGTCATCAATTTAGC 58.969 33.333 0.00 0.00 34.98 3.09
3979 4274 6.024552 TCAAGTTTGGTCATCAATTTAGCC 57.975 37.500 0.00 0.00 34.98 3.93
3980 4275 5.538053 TCAAGTTTGGTCATCAATTTAGCCA 59.462 36.000 0.00 0.00 34.98 4.75
3981 4276 6.041409 TCAAGTTTGGTCATCAATTTAGCCAA 59.959 34.615 0.00 0.00 34.98 4.52
3982 4277 6.029346 AGTTTGGTCATCAATTTAGCCAAG 57.971 37.500 0.00 0.00 37.31 3.61
3983 4278 5.047092 AGTTTGGTCATCAATTTAGCCAAGG 60.047 40.000 0.00 0.00 37.31 3.61
3984 4279 4.314522 TGGTCATCAATTTAGCCAAGGA 57.685 40.909 0.00 0.00 0.00 3.36
3985 4280 4.671831 TGGTCATCAATTTAGCCAAGGAA 58.328 39.130 0.00 0.00 0.00 3.36
3986 4281 5.083122 TGGTCATCAATTTAGCCAAGGAAA 58.917 37.500 0.00 0.00 0.00 3.13
3987 4282 5.721000 TGGTCATCAATTTAGCCAAGGAAAT 59.279 36.000 0.00 0.00 0.00 2.17
3991 4286 7.706607 GTCATCAATTTAGCCAAGGAAATAACC 59.293 37.037 0.00 0.00 0.00 2.85
4013 4308 6.377327 CCGTTATGGTCTTGCAATCTTTAT 57.623 37.500 0.00 0.00 0.00 1.40
4014 4309 6.795399 CCGTTATGGTCTTGCAATCTTTATT 58.205 36.000 0.00 0.00 0.00 1.40
4015 4310 7.257722 CCGTTATGGTCTTGCAATCTTTATTT 58.742 34.615 0.00 0.00 0.00 1.40
4016 4311 8.402472 CCGTTATGGTCTTGCAATCTTTATTTA 58.598 33.333 0.00 0.00 0.00 1.40
4017 4312 9.221775 CGTTATGGTCTTGCAATCTTTATTTAC 57.778 33.333 0.00 0.00 0.00 2.01
4022 4317 9.733556 TGGTCTTGCAATCTTTATTTACTTAGA 57.266 29.630 0.00 0.00 0.00 2.10
4038 4333 8.911918 TTTACTTAGATTAGAAAACACTGCCA 57.088 30.769 0.00 0.00 0.00 4.92
4039 4334 6.803154 ACTTAGATTAGAAAACACTGCCAC 57.197 37.500 0.00 0.00 0.00 5.01
4041 4336 4.373156 AGATTAGAAAACACTGCCACCT 57.627 40.909 0.00 0.00 0.00 4.00
4042 4337 4.074970 AGATTAGAAAACACTGCCACCTG 58.925 43.478 0.00 0.00 0.00 4.00
4043 4338 1.604604 TAGAAAACACTGCCACCTGC 58.395 50.000 0.00 0.00 41.77 4.85
4044 4339 1.109323 AGAAAACACTGCCACCTGCC 61.109 55.000 0.00 0.00 40.16 4.85
4045 4340 2.406452 GAAAACACTGCCACCTGCCG 62.406 60.000 0.00 0.00 40.16 5.69
4046 4341 2.902423 AAAACACTGCCACCTGCCGA 62.902 55.000 0.00 0.00 40.16 5.54
4060 4355 4.553330 CCTGCCGAGGTATAATATGGTT 57.447 45.455 0.00 0.00 34.16 3.67
4061 4356 5.670792 CCTGCCGAGGTATAATATGGTTA 57.329 43.478 0.00 0.00 34.16 2.85
4062 4357 6.235231 CCTGCCGAGGTATAATATGGTTAT 57.765 41.667 0.00 0.00 34.16 1.89
4063 4358 7.356089 CCTGCCGAGGTATAATATGGTTATA 57.644 40.000 0.00 0.00 34.16 0.98
4064 4359 7.963532 CCTGCCGAGGTATAATATGGTTATAT 58.036 38.462 0.00 0.00 34.16 0.86
4065 4360 8.429641 CCTGCCGAGGTATAATATGGTTATATT 58.570 37.037 0.00 0.00 37.59 1.28
4066 4361 9.832445 CTGCCGAGGTATAATATGGTTATATTT 57.168 33.333 0.00 0.00 39.55 1.40
4093 4388 9.780186 ATAAGTCACTATTATCCAACTAAAGCC 57.220 33.333 0.00 0.00 0.00 4.35
4094 4389 6.592870 AGTCACTATTATCCAACTAAAGCCC 58.407 40.000 0.00 0.00 0.00 5.19
4095 4390 6.157994 AGTCACTATTATCCAACTAAAGCCCA 59.842 38.462 0.00 0.00 0.00 5.36
4096 4391 6.826741 GTCACTATTATCCAACTAAAGCCCAA 59.173 38.462 0.00 0.00 0.00 4.12
4097 4392 7.338449 GTCACTATTATCCAACTAAAGCCCAAA 59.662 37.037 0.00 0.00 0.00 3.28
4098 4393 7.338449 TCACTATTATCCAACTAAAGCCCAAAC 59.662 37.037 0.00 0.00 0.00 2.93
4099 4394 7.339466 CACTATTATCCAACTAAAGCCCAAACT 59.661 37.037 0.00 0.00 0.00 2.66
4100 4395 7.893833 ACTATTATCCAACTAAAGCCCAAACTT 59.106 33.333 0.00 0.00 0.00 2.66
4102 4397 3.227614 TCCAACTAAAGCCCAAACTTCC 58.772 45.455 0.00 0.00 0.00 3.46
4103 4398 2.962421 CCAACTAAAGCCCAAACTTCCA 59.038 45.455 0.00 0.00 0.00 3.53
4104 4399 3.578282 CCAACTAAAGCCCAAACTTCCAT 59.422 43.478 0.00 0.00 0.00 3.41
4106 4401 5.454613 CCAACTAAAGCCCAAACTTCCATTT 60.455 40.000 0.00 0.00 0.00 2.32
4108 4403 6.247229 ACTAAAGCCCAAACTTCCATTTTT 57.753 33.333 0.00 0.00 0.00 1.94
4109 4404 6.288294 ACTAAAGCCCAAACTTCCATTTTTC 58.712 36.000 0.00 0.00 0.00 2.29
4110 4405 5.372343 AAAGCCCAAACTTCCATTTTTCT 57.628 34.783 0.00 0.00 0.00 2.52
4111 4406 6.493189 AAAGCCCAAACTTCCATTTTTCTA 57.507 33.333 0.00 0.00 0.00 2.10
4112 4407 5.468540 AGCCCAAACTTCCATTTTTCTAC 57.531 39.130 0.00 0.00 0.00 2.59
4114 4409 6.311735 AGCCCAAACTTCCATTTTTCTACTA 58.688 36.000 0.00 0.00 0.00 1.82
4116 4411 6.208797 GCCCAAACTTCCATTTTTCTACTACT 59.791 38.462 0.00 0.00 0.00 2.57
4117 4412 7.255836 GCCCAAACTTCCATTTTTCTACTACTT 60.256 37.037 0.00 0.00 0.00 2.24
4118 4413 8.638873 CCCAAACTTCCATTTTTCTACTACTTT 58.361 33.333 0.00 0.00 0.00 2.66
4124 4419 8.631480 TTCCATTTTTCTACTACTTTTCCCTC 57.369 34.615 0.00 0.00 0.00 4.30
4125 4420 7.985589 TCCATTTTTCTACTACTTTTCCCTCT 58.014 34.615 0.00 0.00 0.00 3.69
4126 4421 7.883311 TCCATTTTTCTACTACTTTTCCCTCTG 59.117 37.037 0.00 0.00 0.00 3.35
4127 4422 7.665974 CCATTTTTCTACTACTTTTCCCTCTGT 59.334 37.037 0.00 0.00 0.00 3.41
4128 4423 8.507249 CATTTTTCTACTACTTTTCCCTCTGTG 58.493 37.037 0.00 0.00 0.00 3.66
4129 4424 6.989155 TTTCTACTACTTTTCCCTCTGTGA 57.011 37.500 0.00 0.00 0.00 3.58
4130 4425 7.554959 TTTCTACTACTTTTCCCTCTGTGAT 57.445 36.000 0.00 0.00 0.00 3.06
4132 4427 6.936279 TCTACTACTTTTCCCTCTGTGATTG 58.064 40.000 0.00 0.00 0.00 2.67
4134 4429 5.941788 ACTACTTTTCCCTCTGTGATTGTT 58.058 37.500 0.00 0.00 0.00 2.83
4136 4431 4.536765 ACTTTTCCCTCTGTGATTGTTGT 58.463 39.130 0.00 0.00 0.00 3.32
4137 4432 4.339247 ACTTTTCCCTCTGTGATTGTTGTG 59.661 41.667 0.00 0.00 0.00 3.33
4138 4433 3.576078 TTCCCTCTGTGATTGTTGTGT 57.424 42.857 0.00 0.00 0.00 3.72
4140 4435 4.698201 TCCCTCTGTGATTGTTGTGTAA 57.302 40.909 0.00 0.00 0.00 2.41
4141 4436 4.385825 TCCCTCTGTGATTGTTGTGTAAC 58.614 43.478 0.00 0.00 37.32 2.50
4169 4464 8.082242 AGTGAGTTTCTATAATGTTTGTTTGGC 58.918 33.333 0.00 0.00 0.00 4.52
4170 4465 7.865385 GTGAGTTTCTATAATGTTTGTTTGGCA 59.135 33.333 0.00 0.00 0.00 4.92
4171 4466 8.584157 TGAGTTTCTATAATGTTTGTTTGGCAT 58.416 29.630 0.00 0.00 0.00 4.40
4178 4473 2.894731 TGTTTGTTTGGCATATCCCCA 58.105 42.857 0.00 0.00 0.00 4.96
4179 4474 2.564947 TGTTTGTTTGGCATATCCCCAC 59.435 45.455 0.00 0.00 30.65 4.61
4181 4476 0.707024 TGTTTGGCATATCCCCACCA 59.293 50.000 0.00 0.00 30.65 4.17
4182 4477 1.077828 TGTTTGGCATATCCCCACCAA 59.922 47.619 0.00 0.00 40.34 3.67
4183 4478 2.183679 GTTTGGCATATCCCCACCAAA 58.816 47.619 2.06 2.06 46.96 3.28
4185 4480 0.032615 TGGCATATCCCCACCAAACC 60.033 55.000 0.00 0.00 0.00 3.27
4187 4482 0.032615 GCATATCCCCACCAAACCCA 60.033 55.000 0.00 0.00 0.00 4.51
4189 4484 1.287739 CATATCCCCACCAAACCCAGT 59.712 52.381 0.00 0.00 0.00 4.00
4190 4485 0.701731 TATCCCCACCAAACCCAGTG 59.298 55.000 0.00 0.00 0.00 3.66
4191 4486 1.071314 ATCCCCACCAAACCCAGTGA 61.071 55.000 0.00 0.00 36.01 3.41
4192 4487 1.530655 CCCCACCAAACCCAGTGAC 60.531 63.158 0.00 0.00 36.01 3.67
4193 4488 1.530655 CCCACCAAACCCAGTGACC 60.531 63.158 0.00 0.00 36.01 4.02
4194 4489 1.536676 CCACCAAACCCAGTGACCT 59.463 57.895 0.00 0.00 36.01 3.85
4195 4490 0.106217 CCACCAAACCCAGTGACCTT 60.106 55.000 0.00 0.00 36.01 3.50
4197 4492 1.681264 CACCAAACCCAGTGACCTTTC 59.319 52.381 0.00 0.00 36.01 2.62
4199 4494 2.291930 ACCAAACCCAGTGACCTTTCAA 60.292 45.455 0.00 0.00 31.90 2.69
4201 4496 3.023832 CAAACCCAGTGACCTTTCAAGT 58.976 45.455 0.00 0.00 31.90 3.16
4202 4497 3.382083 AACCCAGTGACCTTTCAAGTT 57.618 42.857 0.00 0.00 31.90 2.66
4203 4498 2.654863 ACCCAGTGACCTTTCAAGTTG 58.345 47.619 0.00 0.00 31.90 3.16
4204 4499 2.025321 ACCCAGTGACCTTTCAAGTTGT 60.025 45.455 2.11 0.00 31.90 3.32
4205 4500 2.358898 CCCAGTGACCTTTCAAGTTGTG 59.641 50.000 2.11 0.00 31.90 3.33
4206 4501 2.358898 CCAGTGACCTTTCAAGTTGTGG 59.641 50.000 2.11 6.75 31.90 4.17
4208 4503 3.443681 CAGTGACCTTTCAAGTTGTGGTT 59.556 43.478 15.20 2.60 31.90 3.67
4210 4505 4.526650 AGTGACCTTTCAAGTTGTGGTTTT 59.473 37.500 15.20 5.88 31.90 2.43
4212 4507 3.595173 ACCTTTCAAGTTGTGGTTTTGC 58.405 40.909 2.11 0.00 0.00 3.68
4215 4510 3.951775 TTCAAGTTGTGGTTTTGCACT 57.048 38.095 2.11 0.00 0.00 4.40
4217 4512 2.560542 TCAAGTTGTGGTTTTGCACTGT 59.439 40.909 2.11 0.00 0.00 3.55
4219 4514 3.676291 AGTTGTGGTTTTGCACTGTTT 57.324 38.095 0.00 0.00 0.00 2.83
4220 4515 4.792521 AGTTGTGGTTTTGCACTGTTTA 57.207 36.364 0.00 0.00 0.00 2.01
4221 4516 4.490743 AGTTGTGGTTTTGCACTGTTTAC 58.509 39.130 0.00 0.00 0.00 2.01
4222 4517 4.219725 AGTTGTGGTTTTGCACTGTTTACT 59.780 37.500 0.00 0.00 0.00 2.24
4223 4518 4.792521 TGTGGTTTTGCACTGTTTACTT 57.207 36.364 0.00 0.00 0.00 2.24
4224 4519 5.899120 TGTGGTTTTGCACTGTTTACTTA 57.101 34.783 0.00 0.00 0.00 2.24
4226 4521 7.569639 TGTGGTTTTGCACTGTTTACTTATA 57.430 32.000 0.00 0.00 0.00 0.98
4227 4522 7.644490 TGTGGTTTTGCACTGTTTACTTATAG 58.356 34.615 0.00 0.00 0.00 1.31
4228 4523 7.081976 GTGGTTTTGCACTGTTTACTTATAGG 58.918 38.462 0.00 0.00 0.00 2.57
4229 4524 6.773685 TGGTTTTGCACTGTTTACTTATAGGT 59.226 34.615 0.00 0.00 0.00 3.08
4230 4525 7.081976 GGTTTTGCACTGTTTACTTATAGGTG 58.918 38.462 0.00 0.00 0.00 4.00
4231 4526 7.040961 GGTTTTGCACTGTTTACTTATAGGTGA 60.041 37.037 0.00 0.00 0.00 4.02
4232 4527 7.667043 TTTGCACTGTTTACTTATAGGTGAG 57.333 36.000 0.00 0.00 0.00 3.51
4233 4528 6.354794 TGCACTGTTTACTTATAGGTGAGT 57.645 37.500 0.00 0.00 0.00 3.41
4234 4529 6.765403 TGCACTGTTTACTTATAGGTGAGTT 58.235 36.000 0.00 0.00 0.00 3.01
4235 4530 7.221450 TGCACTGTTTACTTATAGGTGAGTTT 58.779 34.615 0.00 0.00 0.00 2.66
4236 4531 7.386848 TGCACTGTTTACTTATAGGTGAGTTTC 59.613 37.037 0.00 0.00 0.00 2.78
4237 4532 7.386848 GCACTGTTTACTTATAGGTGAGTTTCA 59.613 37.037 0.00 0.00 0.00 2.69
4238 4533 8.926710 CACTGTTTACTTATAGGTGAGTTTCAG 58.073 37.037 0.00 0.00 0.00 3.02
4239 4534 8.095169 ACTGTTTACTTATAGGTGAGTTTCAGG 58.905 37.037 0.00 0.00 0.00 3.86
4240 4535 7.970102 TGTTTACTTATAGGTGAGTTTCAGGT 58.030 34.615 0.00 0.00 0.00 4.00
4242 4537 9.281371 GTTTACTTATAGGTGAGTTTCAGGTTT 57.719 33.333 0.00 0.00 0.00 3.27
4243 4538 9.856162 TTTACTTATAGGTGAGTTTCAGGTTTT 57.144 29.630 0.00 0.00 0.00 2.43
4244 4539 7.745620 ACTTATAGGTGAGTTTCAGGTTTTG 57.254 36.000 0.00 0.00 0.00 2.44
4245 4540 6.206829 ACTTATAGGTGAGTTTCAGGTTTTGC 59.793 38.462 0.00 0.00 0.00 3.68
4246 4541 2.733956 AGGTGAGTTTCAGGTTTTGCA 58.266 42.857 0.00 0.00 0.00 4.08
4247 4542 3.096092 AGGTGAGTTTCAGGTTTTGCAA 58.904 40.909 0.00 0.00 0.00 4.08
4248 4543 3.706086 AGGTGAGTTTCAGGTTTTGCAAT 59.294 39.130 0.00 0.00 0.00 3.56
4249 4544 3.803778 GGTGAGTTTCAGGTTTTGCAATG 59.196 43.478 0.00 0.00 0.00 2.82
4251 4546 4.268405 GTGAGTTTCAGGTTTTGCAATGTG 59.732 41.667 0.00 0.00 0.00 3.21
4253 4548 5.126222 TGAGTTTCAGGTTTTGCAATGTGTA 59.874 36.000 0.00 0.00 0.00 2.90
4254 4549 5.348164 AGTTTCAGGTTTTGCAATGTGTAC 58.652 37.500 0.00 0.00 0.00 2.90
4255 4550 5.127031 AGTTTCAGGTTTTGCAATGTGTACT 59.873 36.000 0.00 0.00 0.00 2.73
4256 4551 5.590530 TTCAGGTTTTGCAATGTGTACTT 57.409 34.783 0.00 0.00 0.00 2.24
4257 4552 6.701145 TTCAGGTTTTGCAATGTGTACTTA 57.299 33.333 0.00 0.00 0.00 2.24
4258 4553 6.892658 TCAGGTTTTGCAATGTGTACTTAT 57.107 33.333 0.00 0.00 0.00 1.73
4265 4723 9.329913 GTTTTGCAATGTGTACTTATAGTTGAG 57.670 33.333 0.00 0.00 0.00 3.02
4267 4725 7.827819 TGCAATGTGTACTTATAGTTGAGAC 57.172 36.000 0.00 0.00 0.00 3.36
4297 4755 4.270808 CCAAGTTGTGGTTTTGCAATCTTC 59.729 41.667 0.00 0.00 43.20 2.87
4298 4756 3.705604 AGTTGTGGTTTTGCAATCTTCG 58.294 40.909 0.00 0.00 0.00 3.79
4300 4758 1.680735 TGTGGTTTTGCAATCTTCGCT 59.319 42.857 0.00 0.00 0.00 4.93
4301 4759 2.100584 TGTGGTTTTGCAATCTTCGCTT 59.899 40.909 0.00 0.00 0.00 4.68
4308 4766 6.129088 GGTTTTGCAATCTTCGCTTAGAAAAG 60.129 38.462 0.00 0.00 38.57 2.27
4311 4769 5.931532 TGCAATCTTCGCTTAGAAAAGAAG 58.068 37.500 0.00 0.00 40.85 2.85
4323 4781 7.474640 CGCTTAGAAAAGAAGTGAATAAACGTC 59.525 37.037 0.00 0.00 36.69 4.34
4324 4782 7.745155 GCTTAGAAAAGAAGTGAATAAACGTCC 59.255 37.037 0.00 0.00 34.37 4.79
4343 4801 4.156922 CGTCCCAACCTGCAAATATACAAA 59.843 41.667 0.00 0.00 0.00 2.83
4352 4810 7.651808 ACCTGCAAATATACAAATGCATCTAC 58.348 34.615 0.00 0.00 46.59 2.59
4362 4820 5.464168 ACAAATGCATCTACAAAGACAAGC 58.536 37.500 0.00 0.00 33.57 4.01
4364 4822 5.710513 AATGCATCTACAAAGACAAGCAA 57.289 34.783 0.00 0.00 39.39 3.91
4365 4823 4.754372 TGCATCTACAAAGACAAGCAAG 57.246 40.909 0.00 0.00 35.60 4.01
4366 4824 4.136796 TGCATCTACAAAGACAAGCAAGT 58.863 39.130 0.00 0.00 35.60 3.16
4368 4826 4.614535 GCATCTACAAAGACAAGCAAGTGG 60.615 45.833 0.00 0.00 33.57 4.00
4369 4827 4.415881 TCTACAAAGACAAGCAAGTGGA 57.584 40.909 0.00 0.00 0.00 4.02
4370 4828 4.127171 TCTACAAAGACAAGCAAGTGGAC 58.873 43.478 0.00 0.00 0.00 4.02
4401 4926 3.775654 CCACTCCCCGGAGCACTC 61.776 72.222 10.79 0.00 45.54 3.51
4402 4927 3.775654 CACTCCCCGGAGCACTCC 61.776 72.222 10.79 6.62 45.54 3.85
4404 4929 4.787280 CTCCCCGGAGCACTCCCT 62.787 72.222 0.73 0.00 46.96 4.20
4405 4930 4.779733 TCCCCGGAGCACTCCCTC 62.780 72.222 0.73 0.00 46.96 4.30
4460 4986 3.319198 GGTCCGGCAGGGTCTTCA 61.319 66.667 2.05 0.00 38.33 3.02
4470 4996 1.134461 CAGGGTCTTCAGGATGCTCTG 60.134 57.143 0.00 0.00 34.76 3.35
4502 5030 1.153706 GCGGTGCTTCGGCTAGTTA 60.154 57.895 0.00 0.00 42.37 2.24
4503 5031 1.419107 GCGGTGCTTCGGCTAGTTAC 61.419 60.000 0.00 0.00 42.37 2.50
4508 5036 0.822164 GCTTCGGCTAGTTACTGGGA 59.178 55.000 0.00 0.00 38.08 4.37
4590 5118 2.844839 ATAGGTGCTCGGCTCCCC 60.845 66.667 11.71 3.59 42.42 4.81
4635 5163 3.134127 GGGCTGGTGGCGAATGAC 61.134 66.667 0.00 0.00 42.94 3.06
4696 5226 2.134933 GGATCCGACACCTCTCCCC 61.135 68.421 0.00 0.00 0.00 4.81
4719 5249 2.981859 TCAAGTTCTTATCTCCCGGC 57.018 50.000 0.00 0.00 0.00 6.13
4794 5324 3.173151 TGCCTTGGAGTCAAGTCTGATA 58.827 45.455 5.56 0.00 46.65 2.15
4796 5326 3.055819 GCCTTGGAGTCAAGTCTGATACA 60.056 47.826 5.56 0.00 46.65 2.29
4799 5329 4.047627 TGGAGTCAAGTCTGATACAGGA 57.952 45.455 0.00 0.00 33.05 3.86
4835 5365 1.296715 GGTGCGGTGGATCTGAAGT 59.703 57.895 0.00 0.00 0.00 3.01
4875 5406 2.203480 AGCCGTTGGTGGTGCATT 60.203 55.556 0.00 0.00 0.00 3.56
4894 5425 4.754667 GTCTGGGGCCGGTCGTTC 62.755 72.222 1.90 0.00 0.00 3.95
4967 5503 2.597510 GGTGGTGGGCACTTGGAC 60.598 66.667 0.00 0.00 0.00 4.02
4978 5514 0.179084 CACTTGGACCACACACGACT 60.179 55.000 0.00 0.00 0.00 4.18
4982 5518 1.522806 GGACCACACACGACTTGCA 60.523 57.895 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.378421 GTCGTTGTTTAACTCCAGTATTATGTC 58.622 37.037 0.00 0.00 34.60 3.06
23 24 8.246908 TGTCGTTGTTTAACTCCAGTATTATG 57.753 34.615 0.00 0.00 34.60 1.90
27 28 7.739498 AAATGTCGTTGTTTAACTCCAGTAT 57.261 32.000 0.00 0.00 34.60 2.12
28 29 8.836268 ATAAATGTCGTTGTTTAACTCCAGTA 57.164 30.769 0.00 0.00 34.60 2.74
30 31 9.146984 TCTATAAATGTCGTTGTTTAACTCCAG 57.853 33.333 0.00 0.00 34.60 3.86
31 32 9.146984 CTCTATAAATGTCGTTGTTTAACTCCA 57.853 33.333 0.00 0.00 34.60 3.86
77 78 2.678336 CCTGAAAGCCCTAATCACGTTC 59.322 50.000 0.00 0.00 0.00 3.95
80 81 2.280628 GACCTGAAAGCCCTAATCACG 58.719 52.381 0.00 0.00 0.00 4.35
93 94 5.071788 ACCAACACTCTAGATTTGACCTGAA 59.928 40.000 8.19 0.00 0.00 3.02
126 127 2.104144 GCTCTTAATGCATTTGACGCG 58.896 47.619 18.75 3.53 0.00 6.01
141 142 3.022406 GCAAATCTCTGAATGGGCTCTT 58.978 45.455 0.00 0.00 0.00 2.85
150 151 6.765036 GGATAATCTGACAGCAAATCTCTGAA 59.235 38.462 0.00 0.00 35.61 3.02
153 154 6.244552 TGGATAATCTGACAGCAAATCTCT 57.755 37.500 0.00 0.00 0.00 3.10
155 156 7.893124 AAATGGATAATCTGACAGCAAATCT 57.107 32.000 0.00 0.00 0.00 2.40
162 163 6.145209 CGACTGCTAAATGGATAATCTGACAG 59.855 42.308 0.00 0.00 0.00 3.51
186 187 4.034510 GTGATGAAAGAAGCCATTAGACCG 59.965 45.833 0.00 0.00 0.00 4.79
191 192 6.899393 AACAAGTGATGAAAGAAGCCATTA 57.101 33.333 0.00 0.00 0.00 1.90
194 195 4.644234 TGAAACAAGTGATGAAAGAAGCCA 59.356 37.500 0.00 0.00 0.00 4.75
206 210 5.809001 AGGAGAATAGCATGAAACAAGTGA 58.191 37.500 0.00 0.00 0.00 3.41
233 237 5.067954 CAGCATCCTATCCACATTCATTGA 58.932 41.667 0.00 0.00 0.00 2.57
234 238 4.217767 CCAGCATCCTATCCACATTCATTG 59.782 45.833 0.00 0.00 0.00 2.82
243 247 2.909006 GGAAGATCCAGCATCCTATCCA 59.091 50.000 0.00 0.00 36.28 3.41
244 248 2.909006 TGGAAGATCCAGCATCCTATCC 59.091 50.000 0.00 0.00 42.67 2.59
267 271 8.306761 ACGAAGAGAGAAAAATGGCATATTTTT 58.693 29.630 18.05 18.05 42.02 1.94
272 276 6.873997 TCTACGAAGAGAGAAAAATGGCATA 58.126 36.000 0.00 0.00 0.00 3.14
274 278 5.147330 TCTACGAAGAGAGAAAAATGGCA 57.853 39.130 0.00 0.00 0.00 4.92
275 279 6.481954 TTTCTACGAAGAGAGAAAAATGGC 57.518 37.500 0.00 0.00 38.97 4.40
280 284 8.774586 CCTTCATTTTTCTACGAAGAGAGAAAA 58.225 33.333 5.85 5.85 44.45 2.29
282 286 6.369065 GCCTTCATTTTTCTACGAAGAGAGAA 59.631 38.462 0.00 0.00 37.63 2.87
283 287 5.869888 GCCTTCATTTTTCTACGAAGAGAGA 59.130 40.000 0.00 0.00 37.63 3.10
284 288 5.872070 AGCCTTCATTTTTCTACGAAGAGAG 59.128 40.000 0.00 0.00 37.63 3.20
285 289 5.794894 AGCCTTCATTTTTCTACGAAGAGA 58.205 37.500 0.00 0.00 37.63 3.10
286 290 7.545965 TCTTAGCCTTCATTTTTCTACGAAGAG 59.454 37.037 0.00 0.00 37.63 2.85
287 291 7.383687 TCTTAGCCTTCATTTTTCTACGAAGA 58.616 34.615 0.00 0.00 37.63 2.87
288 292 7.596749 TCTTAGCCTTCATTTTTCTACGAAG 57.403 36.000 0.00 0.00 35.66 3.79
289 293 6.092259 GCTCTTAGCCTTCATTTTTCTACGAA 59.908 38.462 0.00 0.00 34.48 3.85
291 295 5.351465 TGCTCTTAGCCTTCATTTTTCTACG 59.649 40.000 0.00 0.00 41.51 3.51
292 296 6.743575 TGCTCTTAGCCTTCATTTTTCTAC 57.256 37.500 0.00 0.00 41.51 2.59
294 298 6.186234 AGATGCTCTTAGCCTTCATTTTTCT 58.814 36.000 0.00 0.00 41.51 2.52
295 299 6.448207 AGATGCTCTTAGCCTTCATTTTTC 57.552 37.500 0.00 0.00 41.51 2.29
296 300 5.359292 GGAGATGCTCTTAGCCTTCATTTTT 59.641 40.000 0.00 0.00 41.51 1.94
297 301 4.886489 GGAGATGCTCTTAGCCTTCATTTT 59.114 41.667 0.00 0.00 41.51 1.82
325 340 5.490159 CCATGTGGCCAAAAATAGAAATGT 58.510 37.500 7.24 0.00 0.00 2.71
341 356 0.951558 GCCCTAAATACGCCATGTGG 59.048 55.000 0.00 0.00 38.53 4.17
343 358 1.065053 TGTGCCCTAAATACGCCATGT 60.065 47.619 0.00 0.00 0.00 3.21
344 359 1.603802 CTGTGCCCTAAATACGCCATG 59.396 52.381 0.00 0.00 0.00 3.66
348 363 1.583054 CTCCTGTGCCCTAAATACGC 58.417 55.000 0.00 0.00 0.00 4.42
350 365 1.477014 GCCCTCCTGTGCCCTAAATAC 60.477 57.143 0.00 0.00 0.00 1.89
359 374 0.109132 CGATTTTTGCCCTCCTGTGC 60.109 55.000 0.00 0.00 0.00 4.57
362 377 1.512694 GCCGATTTTTGCCCTCCTG 59.487 57.895 0.00 0.00 0.00 3.86
363 378 1.682344 GGCCGATTTTTGCCCTCCT 60.682 57.895 0.00 0.00 41.97 3.69
364 379 2.892640 GGCCGATTTTTGCCCTCC 59.107 61.111 0.00 0.00 41.97 4.30
384 399 3.663995 TTCATGATTGGGCAGTTGTTG 57.336 42.857 0.00 0.00 0.00 3.33
386 401 3.499338 TCTTTCATGATTGGGCAGTTGT 58.501 40.909 0.00 0.00 0.00 3.32
387 402 4.524316 TTCTTTCATGATTGGGCAGTTG 57.476 40.909 0.00 0.00 0.00 3.16
389 404 5.246656 TGAATTTCTTTCATGATTGGGCAGT 59.753 36.000 0.00 0.00 39.44 4.40
440 456 1.448985 TATTTGTTGCACGAGGAGCC 58.551 50.000 0.00 0.00 0.00 4.70
445 461 2.942376 TGCCCTATATTTGTTGCACGAG 59.058 45.455 0.00 0.00 0.00 4.18
448 464 3.242739 CGACTGCCCTATATTTGTTGCAC 60.243 47.826 0.00 0.00 0.00 4.57
453 469 1.202770 GCCCGACTGCCCTATATTTGT 60.203 52.381 0.00 0.00 0.00 2.83
472 488 4.090057 GCGTTTCTGGACAGCCGC 62.090 66.667 12.44 12.44 36.79 6.53
479 495 2.048222 CAGCCTCGCGTTTCTGGA 60.048 61.111 5.77 0.00 0.00 3.86
513 529 1.672356 CTGAGGGTTTCTGGCCACG 60.672 63.158 0.00 0.00 0.00 4.94
520 536 1.290134 GGGTGGATCTGAGGGTTTCT 58.710 55.000 0.00 0.00 0.00 2.52
562 580 2.838693 GGGGTAGGAGGAGCCGAC 60.839 72.222 0.00 0.00 43.43 4.79
563 581 4.517934 CGGGGTAGGAGGAGCCGA 62.518 72.222 0.00 0.00 43.43 5.54
596 614 3.190849 CGGGAGTCGCGACGAGTA 61.191 66.667 31.56 0.00 39.77 2.59
641 659 2.818921 TGGCATGAAATAGGGCAAAGT 58.181 42.857 0.00 0.00 42.97 2.66
665 683 6.071952 CCCTGTAATACAGCACAAGAATGTTT 60.072 38.462 14.60 0.00 44.63 2.83
667 685 4.943705 CCCTGTAATACAGCACAAGAATGT 59.056 41.667 14.60 0.00 44.63 2.71
668 686 4.201950 GCCCTGTAATACAGCACAAGAATG 60.202 45.833 14.60 0.00 44.63 2.67
669 687 3.947834 GCCCTGTAATACAGCACAAGAAT 59.052 43.478 14.60 0.00 44.63 2.40
671 689 2.571653 AGCCCTGTAATACAGCACAAGA 59.428 45.455 14.60 0.00 44.63 3.02
672 690 2.679837 CAGCCCTGTAATACAGCACAAG 59.320 50.000 14.60 1.22 44.63 3.16
673 691 2.710377 CAGCCCTGTAATACAGCACAA 58.290 47.619 14.60 0.00 44.63 3.33
674 692 1.678728 GCAGCCCTGTAATACAGCACA 60.679 52.381 14.60 0.00 44.63 4.57
675 693 1.017387 GCAGCCCTGTAATACAGCAC 58.983 55.000 14.60 8.55 44.63 4.40
676 694 0.911769 AGCAGCCCTGTAATACAGCA 59.088 50.000 14.60 0.00 44.63 4.41
677 695 1.139853 AGAGCAGCCCTGTAATACAGC 59.860 52.381 14.60 5.76 44.63 4.40
678 696 2.544694 CGAGAGCAGCCCTGTAATACAG 60.545 54.545 13.20 13.20 45.53 2.74
679 697 1.409064 CGAGAGCAGCCCTGTAATACA 59.591 52.381 0.00 0.00 0.00 2.29
680 698 1.269831 CCGAGAGCAGCCCTGTAATAC 60.270 57.143 0.00 0.00 0.00 1.89
686 704 2.757508 TCTCCGAGAGCAGCCCTG 60.758 66.667 0.00 0.00 0.00 4.45
696 714 2.811317 GCAAGTGCCGTCTCCGAG 60.811 66.667 0.00 0.00 35.63 4.63
698 716 2.811317 GAGCAAGTGCCGTCTCCG 60.811 66.667 0.00 0.00 43.38 4.63
771 793 9.748708 CAACACCAATCTCTTTTTATTTCTTGA 57.251 29.630 0.00 0.00 0.00 3.02
773 795 8.923270 TCCAACACCAATCTCTTTTTATTTCTT 58.077 29.630 0.00 0.00 0.00 2.52
774 796 8.477419 TCCAACACCAATCTCTTTTTATTTCT 57.523 30.769 0.00 0.00 0.00 2.52
775 797 7.814587 CCTCCAACACCAATCTCTTTTTATTTC 59.185 37.037 0.00 0.00 0.00 2.17
779 801 5.534654 CACCTCCAACACCAATCTCTTTTTA 59.465 40.000 0.00 0.00 0.00 1.52
781 803 3.891366 CACCTCCAACACCAATCTCTTTT 59.109 43.478 0.00 0.00 0.00 2.27
782 804 3.490348 CACCTCCAACACCAATCTCTTT 58.510 45.455 0.00 0.00 0.00 2.52
783 805 2.815589 GCACCTCCAACACCAATCTCTT 60.816 50.000 0.00 0.00 0.00 2.85
784 806 1.271597 GCACCTCCAACACCAATCTCT 60.272 52.381 0.00 0.00 0.00 3.10
785 807 1.168714 GCACCTCCAACACCAATCTC 58.831 55.000 0.00 0.00 0.00 2.75
786 808 0.773644 AGCACCTCCAACACCAATCT 59.226 50.000 0.00 0.00 0.00 2.40
787 809 1.168714 GAGCACCTCCAACACCAATC 58.831 55.000 0.00 0.00 0.00 2.67
788 810 0.773644 AGAGCACCTCCAACACCAAT 59.226 50.000 0.00 0.00 0.00 3.16
789 811 0.179020 CAGAGCACCTCCAACACCAA 60.179 55.000 0.00 0.00 0.00 3.67
790 812 1.053835 TCAGAGCACCTCCAACACCA 61.054 55.000 0.00 0.00 0.00 4.17
791 813 0.108585 TTCAGAGCACCTCCAACACC 59.891 55.000 0.00 0.00 0.00 4.16
792 814 2.191128 ATTCAGAGCACCTCCAACAC 57.809 50.000 0.00 0.00 0.00 3.32
793 815 2.553028 GGAATTCAGAGCACCTCCAACA 60.553 50.000 7.93 0.00 0.00 3.33
794 816 2.087646 GGAATTCAGAGCACCTCCAAC 58.912 52.381 7.93 0.00 0.00 3.77
795 817 1.704628 TGGAATTCAGAGCACCTCCAA 59.295 47.619 7.93 0.00 30.12 3.53
796 818 1.003580 GTGGAATTCAGAGCACCTCCA 59.996 52.381 7.93 0.00 0.00 3.86
797 819 1.280421 AGTGGAATTCAGAGCACCTCC 59.720 52.381 7.93 0.00 0.00 4.30
798 820 2.777832 AGTGGAATTCAGAGCACCTC 57.222 50.000 7.93 0.00 0.00 3.85
799 821 2.290577 GGAAGTGGAATTCAGAGCACCT 60.291 50.000 7.93 0.00 0.00 4.00
800 822 2.087646 GGAAGTGGAATTCAGAGCACC 58.912 52.381 7.93 0.00 0.00 5.01
801 823 2.485814 GTGGAAGTGGAATTCAGAGCAC 59.514 50.000 7.93 6.15 0.00 4.40
827 849 1.153862 CTGTCTCGCTCTCCACAGC 60.154 63.158 0.00 0.00 35.90 4.40
833 855 0.944386 CCTAGCTCTGTCTCGCTCTC 59.056 60.000 0.00 0.00 37.68 3.20
834 856 0.465460 CCCTAGCTCTGTCTCGCTCT 60.465 60.000 0.00 0.00 37.68 4.09
835 857 0.750182 ACCCTAGCTCTGTCTCGCTC 60.750 60.000 0.00 0.00 37.68 5.03
836 858 0.750182 GACCCTAGCTCTGTCTCGCT 60.750 60.000 0.00 0.00 40.15 4.93
837 859 1.730451 GGACCCTAGCTCTGTCTCGC 61.730 65.000 0.00 0.00 0.00 5.03
893 921 1.003355 CTGCCGCAAGAAGAAGGGA 60.003 57.895 0.00 0.00 43.02 4.20
919 947 1.654137 GCCGATGCGTTTATTGGCG 60.654 57.895 10.55 0.00 45.17 5.69
944 972 4.658786 ACCTCGGCTGGGGGACTT 62.659 66.667 18.05 0.00 0.00 3.01
991 1019 2.280797 TCTCTGTTGTGCGGGTGC 60.281 61.111 0.00 0.00 43.20 5.01
999 1027 0.683973 CTGCTCTGGGTCTCTGTTGT 59.316 55.000 0.00 0.00 0.00 3.32
1002 1030 2.289532 GCCTGCTCTGGGTCTCTGT 61.290 63.158 0.00 0.00 0.00 3.41
1010 1038 2.740055 GTGTGTCGCCTGCTCTGG 60.740 66.667 0.00 0.00 0.00 3.86
1041 1069 3.206211 GATCTCGCCGGAGCTGGAG 62.206 68.421 5.05 2.91 40.26 3.86
1374 1414 4.292178 GAGAGCTGGGATCGGCCG 62.292 72.222 22.12 22.12 46.14 6.13
1375 1415 4.292178 CGAGAGCTGGGATCGGCC 62.292 72.222 0.00 0.00 46.14 6.13
1413 1453 1.716172 GGTCGAATTCGCAAGCTCC 59.284 57.895 22.90 12.93 39.60 4.70
1451 1491 1.473434 GGTAAACCTCTCAGGCATCGG 60.473 57.143 0.00 0.00 39.63 4.18
1456 1496 3.197983 ACATACAGGTAAACCTCTCAGGC 59.802 47.826 0.00 0.00 46.65 4.85
1476 1516 5.692115 TTCAGCCTTTCATCAGGTATACA 57.308 39.130 5.01 0.00 36.15 2.29
1477 1517 7.573968 AAATTCAGCCTTTCATCAGGTATAC 57.426 36.000 0.00 0.00 36.15 1.47
1480 1520 6.916360 AAAAATTCAGCCTTTCATCAGGTA 57.084 33.333 0.00 0.00 36.15 3.08
1481 1521 5.813513 AAAAATTCAGCCTTTCATCAGGT 57.186 34.783 0.00 0.00 36.15 4.00
1508 1548 0.679002 CCAGAAGCACATCACAGGGG 60.679 60.000 0.00 0.00 0.00 4.79
1521 1561 1.972872 ACTTGTCCTGCAACCAGAAG 58.027 50.000 0.00 0.00 41.77 2.85
1605 1645 1.966451 GACCAAACCTGTGAGGCCG 60.966 63.158 0.00 0.00 39.63 6.13
1631 1671 9.920826 CACACAGTGCATATATACTAAAACAAG 57.079 33.333 0.00 0.00 0.00 3.16
1732 1772 2.991190 CACAAAAGCAAGCATCCATCAC 59.009 45.455 0.00 0.00 0.00 3.06
1742 1782 4.032703 AGCTAACACACACAAAAGCAAG 57.967 40.909 0.00 0.00 32.42 4.01
1812 1852 4.402793 AGTCACAGTATGATGGTGGTCTAC 59.597 45.833 0.00 0.00 40.28 2.59
1932 1973 4.401022 AGCAAACCTCACTCATCAATTCA 58.599 39.130 0.00 0.00 0.00 2.57
1962 2003 3.037549 ACCAAATCAGAAAGCCCAACAA 58.962 40.909 0.00 0.00 0.00 2.83
1971 2012 7.331026 ACTATTCGAGATCACCAAATCAGAAA 58.669 34.615 0.00 0.00 32.38 2.52
1974 2015 8.824159 AATACTATTCGAGATCACCAAATCAG 57.176 34.615 0.00 0.00 0.00 2.90
2008 2049 1.685180 GGGGGTGAGTCTATTTTGGCC 60.685 57.143 0.00 0.00 0.00 5.36
2017 2058 1.418908 CCACAGTTGGGGGTGAGTCT 61.419 60.000 0.00 0.00 39.57 3.24
2326 2367 9.667107 CTCCACTGTTTCTCTGGTTATTATTAA 57.333 33.333 0.00 0.00 0.00 1.40
2328 2369 7.112779 CCTCCACTGTTTCTCTGGTTATTATT 58.887 38.462 0.00 0.00 0.00 1.40
2329 2370 6.353082 CCCTCCACTGTTTCTCTGGTTATTAT 60.353 42.308 0.00 0.00 0.00 1.28
2430 2472 8.950007 AATACCAGATTTTTCAAGGGTAGAAA 57.050 30.769 0.00 0.00 34.65 2.52
2536 2776 7.824779 AGAAAGAACCCTAATTACATCACACTC 59.175 37.037 0.00 0.00 0.00 3.51
2545 2785 7.997773 ACAAGGAAGAAAGAACCCTAATTAC 57.002 36.000 0.00 0.00 0.00 1.89
2548 2789 7.665974 CACTAACAAGGAAGAAAGAACCCTAAT 59.334 37.037 0.00 0.00 0.00 1.73
2556 2797 8.593679 TCATATCACACTAACAAGGAAGAAAGA 58.406 33.333 0.00 0.00 0.00 2.52
2624 2866 8.989131 AGTAAATACAGTAATCTGAAGGCCTAA 58.011 33.333 5.16 0.00 43.76 2.69
2696 2939 2.545532 CGCATCAGCTGGGAAACAAAAA 60.546 45.455 15.13 0.00 40.13 1.94
2777 3020 2.827800 ATACATCCACAGGCATCTCG 57.172 50.000 0.00 0.00 0.00 4.04
2829 3072 5.526479 ACTTCGGTAACTCAAAAAGGAACTC 59.474 40.000 0.00 0.00 38.49 3.01
2841 3084 0.037232 AGCTGCCACTTCGGTAACTC 60.037 55.000 0.00 0.00 36.97 3.01
3078 3321 5.008331 AGCTGAGCATTTTTCTCTTCATCA 58.992 37.500 7.39 0.00 0.00 3.07
3157 3400 6.591001 TGAGGAATAATATAGTGCAGTGCAA 58.409 36.000 21.67 5.49 41.47 4.08
3329 3582 4.894784 ACCTGAACAGTTTCGTCATATGT 58.105 39.130 1.90 0.00 34.04 2.29
3373 3626 0.183492 TCAGAGCCTGTTGTTTGCCT 59.817 50.000 2.68 0.00 32.61 4.75
3381 3634 1.625818 CACCCTAGTTCAGAGCCTGTT 59.374 52.381 2.68 0.00 32.61 3.16
3430 3683 7.826252 AGAGCACAAAATATCTCTTCAAGCTAA 59.174 33.333 0.00 0.00 32.44 3.09
3453 3706 4.998033 GTGGAGAGTACCAAAAGGAAAGAG 59.002 45.833 0.00 0.00 41.87 2.85
3483 3736 6.656270 ACTGCAATCTGAGAACACATGATAAA 59.344 34.615 0.00 0.00 0.00 1.40
3506 3759 4.280174 AGAACAGATTGCAATGCAGAAACT 59.720 37.500 18.59 2.42 40.61 2.66
3507 3760 4.384846 CAGAACAGATTGCAATGCAGAAAC 59.615 41.667 18.59 0.00 40.61 2.78
3583 3837 8.994429 TTGCAGAACAGAAATTTTAACTTGAA 57.006 26.923 0.00 0.00 0.00 2.69
3584 3838 9.033481 CATTGCAGAACAGAAATTTTAACTTGA 57.967 29.630 0.00 0.00 0.00 3.02
3594 3848 3.638160 ACCACACATTGCAGAACAGAAAT 59.362 39.130 0.00 0.00 0.00 2.17
3600 3854 2.869233 AACACCACACATTGCAGAAC 57.131 45.000 0.00 0.00 0.00 3.01
3683 3939 1.474478 TCAATCTCCTCTGTCGTGAGC 59.526 52.381 0.00 0.00 33.02 4.26
3744 4000 2.613977 GGTGCATTGACAGCTACAGTCT 60.614 50.000 4.51 0.00 36.94 3.24
3745 4001 1.734465 GGTGCATTGACAGCTACAGTC 59.266 52.381 0.00 0.00 35.19 3.51
3746 4002 1.072173 TGGTGCATTGACAGCTACAGT 59.928 47.619 0.00 0.00 38.84 3.55
3747 4003 1.812235 TGGTGCATTGACAGCTACAG 58.188 50.000 0.00 0.00 38.84 2.74
3748 4004 2.495155 ATGGTGCATTGACAGCTACA 57.505 45.000 0.00 0.00 38.84 2.74
3898 4158 8.622157 TGAGACAGGTTAAGACGATAGAAATAG 58.378 37.037 0.00 0.00 41.38 1.73
3900 4160 7.339721 TCTGAGACAGGTTAAGACGATAGAAAT 59.660 37.037 0.00 0.00 33.83 2.17
3904 4199 6.627395 ATCTGAGACAGGTTAAGACGATAG 57.373 41.667 0.00 0.00 35.23 2.08
3914 4209 4.836825 CACCACATAATCTGAGACAGGTT 58.163 43.478 2.89 2.89 38.46 3.50
3915 4210 3.369892 GCACCACATAATCTGAGACAGGT 60.370 47.826 0.00 0.00 31.51 4.00
3941 4236 6.183360 ACCAAACTTGAATCTCAAAATCCGTT 60.183 34.615 0.00 0.00 35.73 4.44
3943 4238 5.772521 ACCAAACTTGAATCTCAAAATCCG 58.227 37.500 0.00 0.00 35.73 4.18
3945 4240 8.084073 TGATGACCAAACTTGAATCTCAAAATC 58.916 33.333 0.00 0.00 35.73 2.17
3954 4249 7.099120 GGCTAAATTGATGACCAAACTTGAAT 58.901 34.615 0.00 0.00 38.43 2.57
3957 4252 5.782047 TGGCTAAATTGATGACCAAACTTG 58.218 37.500 0.00 0.00 38.43 3.16
3959 4254 5.047092 CCTTGGCTAAATTGATGACCAAACT 60.047 40.000 0.00 0.00 38.43 2.66
3960 4255 5.047377 TCCTTGGCTAAATTGATGACCAAAC 60.047 40.000 0.00 0.00 38.43 2.93
3963 4258 4.314522 TCCTTGGCTAAATTGATGACCA 57.685 40.909 0.00 0.00 0.00 4.02
3964 4259 5.659440 TTTCCTTGGCTAAATTGATGACC 57.341 39.130 0.00 0.00 0.00 4.02
3965 4260 7.706607 GGTTATTTCCTTGGCTAAATTGATGAC 59.293 37.037 0.00 0.00 0.00 3.06
3966 4261 7.416213 CGGTTATTTCCTTGGCTAAATTGATGA 60.416 37.037 0.00 0.00 0.00 2.92
3967 4262 6.697019 CGGTTATTTCCTTGGCTAAATTGATG 59.303 38.462 0.00 0.00 0.00 3.07
3968 4263 6.379988 ACGGTTATTTCCTTGGCTAAATTGAT 59.620 34.615 0.00 0.00 0.00 2.57
3969 4264 5.712917 ACGGTTATTTCCTTGGCTAAATTGA 59.287 36.000 0.00 0.00 0.00 2.57
3970 4265 5.961272 ACGGTTATTTCCTTGGCTAAATTG 58.039 37.500 0.00 0.00 0.00 2.32
3971 4266 6.599356 AACGGTTATTTCCTTGGCTAAATT 57.401 33.333 0.00 0.00 0.00 1.82
3972 4267 7.201875 CCATAACGGTTATTTCCTTGGCTAAAT 60.202 37.037 10.59 0.00 0.00 1.40
3973 4268 6.095720 CCATAACGGTTATTTCCTTGGCTAAA 59.904 38.462 10.59 0.00 0.00 1.85
3974 4269 5.591067 CCATAACGGTTATTTCCTTGGCTAA 59.409 40.000 10.59 0.00 0.00 3.09
3975 4270 5.127491 CCATAACGGTTATTTCCTTGGCTA 58.873 41.667 10.59 0.00 0.00 3.93
3976 4271 3.951680 CCATAACGGTTATTTCCTTGGCT 59.048 43.478 10.59 0.00 0.00 4.75
3977 4272 4.301637 CCATAACGGTTATTTCCTTGGC 57.698 45.455 10.59 0.00 0.00 4.52
3991 4286 9.221775 GTAAATAAAGATTGCAAGACCATAACG 57.778 33.333 4.94 0.00 0.00 3.18
4013 4308 8.780249 GTGGCAGTGTTTTCTAATCTAAGTAAA 58.220 33.333 0.00 0.00 0.00 2.01
4014 4309 7.389607 GGTGGCAGTGTTTTCTAATCTAAGTAA 59.610 37.037 0.00 0.00 0.00 2.24
4015 4310 6.877322 GGTGGCAGTGTTTTCTAATCTAAGTA 59.123 38.462 0.00 0.00 0.00 2.24
4016 4311 5.705905 GGTGGCAGTGTTTTCTAATCTAAGT 59.294 40.000 0.00 0.00 0.00 2.24
4017 4312 5.940470 AGGTGGCAGTGTTTTCTAATCTAAG 59.060 40.000 0.00 0.00 0.00 2.18
4018 4313 5.705441 CAGGTGGCAGTGTTTTCTAATCTAA 59.295 40.000 0.00 0.00 0.00 2.10
4020 4315 4.074970 CAGGTGGCAGTGTTTTCTAATCT 58.925 43.478 0.00 0.00 0.00 2.40
4021 4316 3.366374 GCAGGTGGCAGTGTTTTCTAATC 60.366 47.826 0.00 0.00 43.97 1.75
4022 4317 2.558359 GCAGGTGGCAGTGTTTTCTAAT 59.442 45.455 0.00 0.00 43.97 1.73
4024 4319 1.604604 GCAGGTGGCAGTGTTTTCTA 58.395 50.000 0.00 0.00 43.97 2.10
4025 4320 2.419057 GCAGGTGGCAGTGTTTTCT 58.581 52.632 0.00 0.00 43.97 2.52
4039 4334 4.553330 AACCATATTATACCTCGGCAGG 57.447 45.455 2.01 2.01 46.87 4.85
4067 4362 9.780186 GGCTTTAGTTGGATAATAGTGACTTAT 57.220 33.333 0.00 0.00 0.00 1.73
4068 4363 8.208903 GGGCTTTAGTTGGATAATAGTGACTTA 58.791 37.037 0.00 0.00 0.00 2.24
4069 4364 7.054751 GGGCTTTAGTTGGATAATAGTGACTT 58.945 38.462 0.00 0.00 0.00 3.01
4070 4365 6.157994 TGGGCTTTAGTTGGATAATAGTGACT 59.842 38.462 0.00 0.00 0.00 3.41
4071 4366 6.354130 TGGGCTTTAGTTGGATAATAGTGAC 58.646 40.000 0.00 0.00 0.00 3.67
4072 4367 6.569127 TGGGCTTTAGTTGGATAATAGTGA 57.431 37.500 0.00 0.00 0.00 3.41
4074 4369 7.410991 AGTTTGGGCTTTAGTTGGATAATAGT 58.589 34.615 0.00 0.00 0.00 2.12
4075 4370 7.881775 AGTTTGGGCTTTAGTTGGATAATAG 57.118 36.000 0.00 0.00 0.00 1.73
4076 4371 7.340999 GGAAGTTTGGGCTTTAGTTGGATAATA 59.659 37.037 0.00 0.00 0.00 0.98
4077 4372 6.154534 GGAAGTTTGGGCTTTAGTTGGATAAT 59.845 38.462 0.00 0.00 0.00 1.28
4082 4377 2.962421 TGGAAGTTTGGGCTTTAGTTGG 59.038 45.455 0.00 0.00 0.00 3.77
4084 4379 5.887214 AAATGGAAGTTTGGGCTTTAGTT 57.113 34.783 0.00 0.00 0.00 2.24
4085 4380 5.887214 AAAATGGAAGTTTGGGCTTTAGT 57.113 34.783 0.00 0.00 30.25 2.24
4086 4381 6.524734 AGAAAAATGGAAGTTTGGGCTTTAG 58.475 36.000 0.00 0.00 32.69 1.85
4087 4382 6.493189 AGAAAAATGGAAGTTTGGGCTTTA 57.507 33.333 0.00 0.00 32.69 1.85
4088 4383 5.372343 AGAAAAATGGAAGTTTGGGCTTT 57.628 34.783 0.00 0.00 32.69 3.51
4090 4385 5.147767 AGTAGAAAAATGGAAGTTTGGGCT 58.852 37.500 0.00 0.00 32.69 5.19
4091 4386 5.468540 AGTAGAAAAATGGAAGTTTGGGC 57.531 39.130 0.00 0.00 32.69 5.36
4092 4387 7.761038 AGTAGTAGAAAAATGGAAGTTTGGG 57.239 36.000 0.00 0.00 32.69 4.12
4096 4391 8.857098 GGGAAAAGTAGTAGAAAAATGGAAGTT 58.143 33.333 0.00 0.00 0.00 2.66
4097 4392 8.225416 AGGGAAAAGTAGTAGAAAAATGGAAGT 58.775 33.333 0.00 0.00 0.00 3.01
4098 4393 8.637196 AGGGAAAAGTAGTAGAAAAATGGAAG 57.363 34.615 0.00 0.00 0.00 3.46
4099 4394 8.445588 AGAGGGAAAAGTAGTAGAAAAATGGAA 58.554 33.333 0.00 0.00 0.00 3.53
4100 4395 7.883311 CAGAGGGAAAAGTAGTAGAAAAATGGA 59.117 37.037 0.00 0.00 0.00 3.41
4102 4397 8.507249 CACAGAGGGAAAAGTAGTAGAAAAATG 58.493 37.037 0.00 0.00 0.00 2.32
4103 4398 8.437575 TCACAGAGGGAAAAGTAGTAGAAAAAT 58.562 33.333 0.00 0.00 0.00 1.82
4104 4399 7.798071 TCACAGAGGGAAAAGTAGTAGAAAAA 58.202 34.615 0.00 0.00 0.00 1.94
4106 4401 6.989155 TCACAGAGGGAAAAGTAGTAGAAA 57.011 37.500 0.00 0.00 0.00 2.52
4108 4403 6.497259 ACAATCACAGAGGGAAAAGTAGTAGA 59.503 38.462 0.00 0.00 0.00 2.59
4109 4404 6.702329 ACAATCACAGAGGGAAAAGTAGTAG 58.298 40.000 0.00 0.00 0.00 2.57
4110 4405 6.681729 ACAATCACAGAGGGAAAAGTAGTA 57.318 37.500 0.00 0.00 0.00 1.82
4111 4406 5.568620 ACAATCACAGAGGGAAAAGTAGT 57.431 39.130 0.00 0.00 0.00 2.73
4112 4407 5.765182 ACAACAATCACAGAGGGAAAAGTAG 59.235 40.000 0.00 0.00 0.00 2.57
4114 4409 4.339247 CACAACAATCACAGAGGGAAAAGT 59.661 41.667 0.00 0.00 0.00 2.66
4116 4411 4.277476 ACACAACAATCACAGAGGGAAAA 58.723 39.130 0.00 0.00 0.00 2.29
4117 4412 3.897239 ACACAACAATCACAGAGGGAAA 58.103 40.909 0.00 0.00 0.00 3.13
4118 4413 3.576078 ACACAACAATCACAGAGGGAA 57.424 42.857 0.00 0.00 0.00 3.97
4120 4415 4.133820 TGTTACACAACAATCACAGAGGG 58.866 43.478 0.00 0.00 41.69 4.30
4134 4429 9.772973 ACATTATAGAAACTCACTTGTTACACA 57.227 29.630 0.00 0.00 0.00 3.72
4143 4438 8.082242 GCCAAACAAACATTATAGAAACTCACT 58.918 33.333 0.00 0.00 0.00 3.41
4145 4440 7.946207 TGCCAAACAAACATTATAGAAACTCA 58.054 30.769 0.00 0.00 0.00 3.41
4146 4441 8.986477 ATGCCAAACAAACATTATAGAAACTC 57.014 30.769 0.00 0.00 0.00 3.01
4150 4445 8.637986 GGGATATGCCAAACAAACATTATAGAA 58.362 33.333 8.65 0.00 38.95 2.10
4152 4447 7.015098 TGGGGATATGCCAAACAAACATTATAG 59.985 37.037 15.93 0.00 38.95 1.31
4154 4449 5.664908 TGGGGATATGCCAAACAAACATTAT 59.335 36.000 15.93 0.00 38.95 1.28
4156 4451 3.843027 TGGGGATATGCCAAACAAACATT 59.157 39.130 15.93 0.00 38.95 2.71
4157 4452 3.197549 GTGGGGATATGCCAAACAAACAT 59.802 43.478 15.93 0.00 38.95 2.71
4158 4453 2.564947 GTGGGGATATGCCAAACAAACA 59.435 45.455 15.93 0.00 38.95 2.83
4159 4454 2.093711 GGTGGGGATATGCCAAACAAAC 60.094 50.000 15.93 3.23 38.95 2.93
4160 4455 2.183679 GGTGGGGATATGCCAAACAAA 58.816 47.619 15.93 0.00 38.95 2.83
4161 4456 1.077828 TGGTGGGGATATGCCAAACAA 59.922 47.619 15.93 3.49 38.95 2.83
4162 4457 0.707024 TGGTGGGGATATGCCAAACA 59.293 50.000 15.93 10.32 38.95 2.83
4163 4458 1.859302 TTGGTGGGGATATGCCAAAC 58.141 50.000 15.93 7.24 37.97 2.93
4165 4460 1.621072 GGTTTGGTGGGGATATGCCAA 60.621 52.381 15.93 0.00 39.00 4.52
4169 4464 1.287739 ACTGGGTTTGGTGGGGATATG 59.712 52.381 0.00 0.00 0.00 1.78
4170 4465 1.287739 CACTGGGTTTGGTGGGGATAT 59.712 52.381 0.00 0.00 0.00 1.63
4171 4466 0.701731 CACTGGGTTTGGTGGGGATA 59.298 55.000 0.00 0.00 0.00 2.59
4172 4467 1.071314 TCACTGGGTTTGGTGGGGAT 61.071 55.000 0.00 0.00 34.57 3.85
4173 4468 1.698116 TCACTGGGTTTGGTGGGGA 60.698 57.895 0.00 0.00 34.57 4.81
4175 4470 1.530655 GGTCACTGGGTTTGGTGGG 60.531 63.158 0.00 0.00 34.57 4.61
4178 4473 1.286553 TGAAAGGTCACTGGGTTTGGT 59.713 47.619 0.00 0.00 0.00 3.67
4179 4474 2.065899 TGAAAGGTCACTGGGTTTGG 57.934 50.000 0.00 0.00 0.00 3.28
4181 4476 3.382083 ACTTGAAAGGTCACTGGGTTT 57.618 42.857 0.00 0.00 31.90 3.27
4182 4477 3.023832 CAACTTGAAAGGTCACTGGGTT 58.976 45.455 0.00 0.00 31.90 4.11
4183 4478 2.025321 ACAACTTGAAAGGTCACTGGGT 60.025 45.455 0.00 0.00 31.90 4.51
4185 4480 2.358898 CCACAACTTGAAAGGTCACTGG 59.641 50.000 0.00 0.00 31.90 4.00
4187 4482 3.366052 ACCACAACTTGAAAGGTCACT 57.634 42.857 0.00 0.00 31.90 3.41
4189 4484 4.815269 CAAAACCACAACTTGAAAGGTCA 58.185 39.130 0.00 0.00 0.00 4.02
4190 4485 3.616821 GCAAAACCACAACTTGAAAGGTC 59.383 43.478 0.00 0.00 0.00 3.85
4191 4486 3.007398 TGCAAAACCACAACTTGAAAGGT 59.993 39.130 0.00 0.00 0.00 3.50
4192 4487 3.370672 GTGCAAAACCACAACTTGAAAGG 59.629 43.478 0.00 0.00 35.80 3.11
4193 4488 4.091800 CAGTGCAAAACCACAACTTGAAAG 59.908 41.667 0.00 0.00 38.18 2.62
4194 4489 3.993081 CAGTGCAAAACCACAACTTGAAA 59.007 39.130 0.00 0.00 38.18 2.69
4195 4490 3.006323 ACAGTGCAAAACCACAACTTGAA 59.994 39.130 0.00 0.00 38.18 2.69
4197 4492 2.958213 ACAGTGCAAAACCACAACTTG 58.042 42.857 0.00 0.00 38.18 3.16
4199 4494 3.676291 AAACAGTGCAAAACCACAACT 57.324 38.095 0.00 0.00 38.18 3.16
4201 4496 4.792521 AGTAAACAGTGCAAAACCACAA 57.207 36.364 0.00 0.00 38.18 3.33
4202 4497 4.792521 AAGTAAACAGTGCAAAACCACA 57.207 36.364 0.00 0.00 38.18 4.17
4203 4498 7.081976 CCTATAAGTAAACAGTGCAAAACCAC 58.918 38.462 0.00 0.00 35.98 4.16
4204 4499 6.773685 ACCTATAAGTAAACAGTGCAAAACCA 59.226 34.615 0.00 0.00 0.00 3.67
4205 4500 7.040961 TCACCTATAAGTAAACAGTGCAAAACC 60.041 37.037 0.00 0.00 0.00 3.27
4206 4501 7.867752 TCACCTATAAGTAAACAGTGCAAAAC 58.132 34.615 0.00 0.00 0.00 2.43
4208 4503 7.221450 ACTCACCTATAAGTAAACAGTGCAAA 58.779 34.615 0.00 0.00 0.00 3.68
4210 4505 6.354794 ACTCACCTATAAGTAAACAGTGCA 57.645 37.500 0.00 0.00 0.00 4.57
4212 4507 8.827177 TGAAACTCACCTATAAGTAAACAGTG 57.173 34.615 0.00 0.00 0.00 3.66
4215 4510 7.970102 ACCTGAAACTCACCTATAAGTAAACA 58.030 34.615 0.00 0.00 0.00 2.83
4217 4512 9.856162 AAAACCTGAAACTCACCTATAAGTAAA 57.144 29.630 0.00 0.00 0.00 2.01
4219 4514 7.389607 GCAAAACCTGAAACTCACCTATAAGTA 59.610 37.037 0.00 0.00 0.00 2.24
4220 4515 6.206829 GCAAAACCTGAAACTCACCTATAAGT 59.793 38.462 0.00 0.00 0.00 2.24
4221 4516 6.206634 TGCAAAACCTGAAACTCACCTATAAG 59.793 38.462 0.00 0.00 0.00 1.73
4222 4517 6.065374 TGCAAAACCTGAAACTCACCTATAA 58.935 36.000 0.00 0.00 0.00 0.98
4223 4518 5.626142 TGCAAAACCTGAAACTCACCTATA 58.374 37.500 0.00 0.00 0.00 1.31
4224 4519 4.469657 TGCAAAACCTGAAACTCACCTAT 58.530 39.130 0.00 0.00 0.00 2.57
4226 4521 2.733956 TGCAAAACCTGAAACTCACCT 58.266 42.857 0.00 0.00 0.00 4.00
4227 4522 3.518634 TTGCAAAACCTGAAACTCACC 57.481 42.857 0.00 0.00 0.00 4.02
4228 4523 4.268405 CACATTGCAAAACCTGAAACTCAC 59.732 41.667 1.71 0.00 0.00 3.51
4229 4524 4.081752 ACACATTGCAAAACCTGAAACTCA 60.082 37.500 1.71 0.00 0.00 3.41
4230 4525 4.432712 ACACATTGCAAAACCTGAAACTC 58.567 39.130 1.71 0.00 0.00 3.01
4231 4526 4.470334 ACACATTGCAAAACCTGAAACT 57.530 36.364 1.71 0.00 0.00 2.66
4232 4527 5.348164 AGTACACATTGCAAAACCTGAAAC 58.652 37.500 1.71 0.00 0.00 2.78
4233 4528 5.590530 AGTACACATTGCAAAACCTGAAA 57.409 34.783 1.71 0.00 0.00 2.69
4234 4529 5.590530 AAGTACACATTGCAAAACCTGAA 57.409 34.783 1.71 0.00 0.00 3.02
4235 4530 6.892658 ATAAGTACACATTGCAAAACCTGA 57.107 33.333 1.71 0.00 0.00 3.86
4236 4531 7.816640 ACTATAAGTACACATTGCAAAACCTG 58.183 34.615 1.71 0.00 0.00 4.00
4237 4532 7.996098 ACTATAAGTACACATTGCAAAACCT 57.004 32.000 1.71 0.00 0.00 3.50
4238 4533 8.293867 TCAACTATAAGTACACATTGCAAAACC 58.706 33.333 1.71 0.00 0.00 3.27
4239 4534 9.329913 CTCAACTATAAGTACACATTGCAAAAC 57.670 33.333 1.71 0.00 0.00 2.43
4240 4535 9.278978 TCTCAACTATAAGTACACATTGCAAAA 57.721 29.630 1.71 0.00 0.00 2.44
4242 4537 8.094548 AGTCTCAACTATAAGTACACATTGCAA 58.905 33.333 0.00 0.00 32.59 4.08
4243 4538 7.545615 CAGTCTCAACTATAAGTACACATTGCA 59.454 37.037 0.00 0.00 33.25 4.08
4244 4539 7.545965 ACAGTCTCAACTATAAGTACACATTGC 59.454 37.037 0.00 0.00 33.25 3.56
4245 4540 8.988064 ACAGTCTCAACTATAAGTACACATTG 57.012 34.615 0.00 0.00 33.25 2.82
4248 4543 8.517878 GGTAACAGTCTCAACTATAAGTACACA 58.482 37.037 0.00 0.00 33.25 3.72
4249 4544 7.972832 GGGTAACAGTCTCAACTATAAGTACAC 59.027 40.741 0.00 0.00 33.25 2.90
4251 4546 8.059798 TGGGTAACAGTCTCAACTATAAGTAC 57.940 38.462 0.00 0.00 33.25 2.73
4253 4548 7.234988 ACTTGGGTAACAGTCTCAACTATAAGT 59.765 37.037 0.00 0.00 33.25 2.24
4254 4549 7.612677 ACTTGGGTAACAGTCTCAACTATAAG 58.387 38.462 0.00 0.00 33.25 1.73
4255 4550 7.549147 ACTTGGGTAACAGTCTCAACTATAA 57.451 36.000 0.00 0.00 33.25 0.98
4256 4551 7.015877 ACAACTTGGGTAACAGTCTCAACTATA 59.984 37.037 0.00 0.00 33.25 1.31
4257 4552 6.183361 ACAACTTGGGTAACAGTCTCAACTAT 60.183 38.462 0.00 0.00 33.25 2.12
4258 4553 5.129815 ACAACTTGGGTAACAGTCTCAACTA 59.870 40.000 0.00 0.00 33.25 2.24
4294 4752 9.319223 GTTTATTCACTTCTTTTCTAAGCGAAG 57.681 33.333 0.00 0.00 38.95 3.79
4297 4755 7.288672 ACGTTTATTCACTTCTTTTCTAAGCG 58.711 34.615 0.00 0.00 0.00 4.68
4298 4756 7.745155 GGACGTTTATTCACTTCTTTTCTAAGC 59.255 37.037 0.00 0.00 0.00 3.09
4300 4758 7.716123 TGGGACGTTTATTCACTTCTTTTCTAA 59.284 33.333 0.00 0.00 0.00 2.10
4301 4759 7.218614 TGGGACGTTTATTCACTTCTTTTCTA 58.781 34.615 0.00 0.00 0.00 2.10
4308 4766 4.070009 AGGTTGGGACGTTTATTCACTTC 58.930 43.478 0.00 0.00 0.00 3.01
4311 4769 2.095415 GCAGGTTGGGACGTTTATTCAC 60.095 50.000 0.00 0.00 0.00 3.18
4323 4781 4.810491 GCATTTGTATATTTGCAGGTTGGG 59.190 41.667 0.00 0.00 35.22 4.12
4324 4782 5.417811 TGCATTTGTATATTTGCAGGTTGG 58.582 37.500 0.00 0.00 39.98 3.77
4343 4801 4.763793 ACTTGCTTGTCTTTGTAGATGCAT 59.236 37.500 0.00 0.00 35.51 3.96
4352 4810 1.597937 GCGTCCACTTGCTTGTCTTTG 60.598 52.381 0.00 0.00 0.00 2.77
4362 4820 1.398390 GCTGGATAAAGCGTCCACTTG 59.602 52.381 0.01 0.00 40.72 3.16
4364 4822 3.460648 GCTGGATAAAGCGTCCACT 57.539 52.632 0.01 0.00 40.72 4.00
4401 4926 1.307343 ATCAGGGAGGTGTGGAGGG 60.307 63.158 0.00 0.00 0.00 4.30
4402 4927 1.630126 CCATCAGGGAGGTGTGGAGG 61.630 65.000 0.00 0.00 40.01 4.30
4403 4928 1.910722 CCATCAGGGAGGTGTGGAG 59.089 63.158 0.00 0.00 40.01 3.86
4404 4929 4.152248 CCATCAGGGAGGTGTGGA 57.848 61.111 0.00 0.00 40.01 4.02
4441 4966 2.852075 AAGACCCTGCCGGACCAA 60.852 61.111 5.05 0.00 34.64 3.67
4455 4981 1.910722 GCCCAGAGCATCCTGAAGA 59.089 57.895 0.00 0.00 42.97 2.87
4502 5030 0.687354 CACTTGCTACACCTCCCAGT 59.313 55.000 0.00 0.00 0.00 4.00
4503 5031 0.036010 CCACTTGCTACACCTCCCAG 60.036 60.000 0.00 0.00 0.00 4.45
4508 5036 0.474184 AGTTGCCACTTGCTACACCT 59.526 50.000 1.98 0.00 46.43 4.00
4524 5052 1.898574 CCAAACCGGAGCAGCAGTT 60.899 57.895 9.46 0.00 36.56 3.16
4525 5053 2.281761 CCAAACCGGAGCAGCAGT 60.282 61.111 9.46 0.00 36.56 4.40
4606 5134 2.997315 CAGCCCAGACCGAGGTCA 60.997 66.667 22.66 0.00 46.76 4.02
4610 5138 4.087892 CCACCAGCCCAGACCGAG 62.088 72.222 0.00 0.00 0.00 4.63
4635 5163 2.524569 AAAAATCACACCCAAAGGCG 57.475 45.000 0.00 0.00 36.11 5.52
4651 5180 0.387565 GGCGCCTCCAACAAGAAAAA 59.612 50.000 22.15 0.00 34.01 1.94
4696 5226 2.860735 CGGGAGATAAGAACTTGAAGCG 59.139 50.000 0.00 0.00 0.00 4.68
4719 5249 0.030101 ACCATTGCACACGGTTTTCG 59.970 50.000 0.00 0.00 45.88 3.46
4835 5365 1.827789 GCTCACCAAACACTGCCCA 60.828 57.895 0.00 0.00 0.00 5.36
4894 5425 4.778415 CTGCACTCCCGTCGACCG 62.778 72.222 10.58 3.03 0.00 4.79
4967 5503 1.081906 GCATGCAAGTCGTGTGTGG 60.082 57.895 14.21 0.00 34.19 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.