Multiple sequence alignment - TraesCS4A01G008100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G008100 chr4A 100.000 5398 0 0 1 5398 4866492 4871889 0.000000e+00 9969.0
1 TraesCS4A01G008100 chr4A 90.244 287 17 3 480 755 624109159 624108873 1.100000e-96 364.0
2 TraesCS4A01G008100 chr4D 89.236 2852 213 43 1988 4780 465563007 465560191 0.000000e+00 3480.0
3 TraesCS4A01G008100 chr4D 87.522 1162 106 31 756 1902 465564137 465563000 0.000000e+00 1306.0
4 TraesCS4A01G008100 chr4D 86.004 493 34 15 1 487 465564586 465564123 3.760000e-136 496.0
5 TraesCS4A01G008100 chr4D 82.967 546 56 7 4048 4556 465415340 465414795 4.930000e-125 459.0
6 TraesCS4A01G008100 chr4D 85.328 259 18 6 4777 5032 465560162 465559921 3.230000e-62 250.0
7 TraesCS4A01G008100 chr4D 91.579 95 8 0 1907 2001 322674854 322674948 1.220000e-26 132.0
8 TraesCS4A01G008100 chr5B 88.473 2403 234 24 2164 4530 515400650 515398255 0.000000e+00 2863.0
9 TraesCS4A01G008100 chr5B 81.368 687 103 17 1183 1860 515401785 515401115 2.210000e-148 536.0
10 TraesCS4A01G008100 chr5B 86.411 287 28 2 480 755 488016743 488017029 2.440000e-78 303.0
11 TraesCS4A01G008100 chr5B 91.453 117 9 1 992 1107 515402096 515401980 5.600000e-35 159.0
12 TraesCS4A01G008100 chr5B 93.023 43 3 0 1856 1898 515401084 515401042 4.510000e-06 63.9
13 TraesCS4A01G008100 chr5A 87.361 2524 256 32 2164 4634 540276830 540274317 0.000000e+00 2835.0
14 TraesCS4A01G008100 chr5A 84.110 472 66 7 1392 1860 540277763 540277298 1.070000e-121 448.0
15 TraesCS4A01G008100 chr5A 95.455 286 3 1 480 755 567213789 567214074 1.070000e-121 448.0
16 TraesCS4A01G008100 chr5A 91.756 279 21 2 478 754 174262496 174262774 2.360000e-103 387.0
17 TraesCS4A01G008100 chr5A 90.517 116 10 1 992 1107 540279187 540279073 9.360000e-33 152.0
18 TraesCS4A01G008100 chr5A 91.579 95 7 1 1903 1997 207681826 207681919 4.390000e-26 130.0
19 TraesCS4A01G008100 chr5A 92.308 52 4 0 2073 2124 540276881 540276830 2.090000e-09 75.0
20 TraesCS4A01G008100 chr5A 87.273 55 4 2 1856 1910 540277267 540277216 5.840000e-05 60.2
21 TraesCS4A01G008100 chr5D 87.627 2457 243 33 2236 4634 425996904 425994451 0.000000e+00 2796.0
22 TraesCS4A01G008100 chr5D 82.090 603 85 17 1175 1766 425997972 425997382 1.350000e-135 494.0
23 TraesCS4A01G008100 chr5D 80.769 234 32 12 875 1107 425998381 425998160 2.590000e-38 171.0
24 TraesCS4A01G008100 chr5D 92.553 94 7 0 1904 1997 367998174 367998081 9.430000e-28 135.0
25 TraesCS4A01G008100 chr4B 89.214 2290 163 33 2469 4704 582360770 582358511 0.000000e+00 2784.0
26 TraesCS4A01G008100 chr4B 86.824 721 73 17 1181 1898 582362242 582361541 0.000000e+00 785.0
27 TraesCS4A01G008100 chr4B 89.280 653 30 7 4777 5398 582358468 582357825 0.000000e+00 782.0
28 TraesCS4A01G008100 chr4B 86.056 502 56 11 1969 2470 582361507 582361020 1.330000e-145 527.0
29 TraesCS4A01G008100 chr4B 88.084 428 27 11 756 1161 582362841 582362416 2.260000e-133 486.0
30 TraesCS4A01G008100 chr4B 85.000 260 16 11 4 251 582366768 582366520 5.400000e-60 243.0
31 TraesCS4A01G008100 chr4B 86.260 131 12 5 4019 4143 582161240 582161110 2.620000e-28 137.0
32 TraesCS4A01G008100 chr4B 94.444 54 3 0 4155 4208 582161002 582160949 3.460000e-12 84.2
33 TraesCS4A01G008100 chr6A 90.323 279 23 4 480 755 13976647 13976370 3.970000e-96 363.0
34 TraesCS4A01G008100 chr6A 89.324 281 28 2 480 759 4957434 4957155 8.600000e-93 351.0
35 TraesCS4A01G008100 chr3A 87.889 289 23 8 481 757 628874576 628874864 4.030000e-86 329.0
36 TraesCS4A01G008100 chr3A 86.207 290 24 14 480 755 743552836 743552549 3.160000e-77 300.0
37 TraesCS4A01G008100 chrUn 87.544 281 31 3 480 759 2437236 2436959 6.740000e-84 322.0
38 TraesCS4A01G008100 chr1B 87.500 288 24 8 480 755 670904818 670905105 6.740000e-84 322.0
39 TraesCS4A01G008100 chr1B 93.407 91 6 0 1907 1997 327340590 327340500 9.430000e-28 135.0
40 TraesCS4A01G008100 chr7D 86.348 293 37 3 472 763 622226687 622226977 3.140000e-82 316.0
41 TraesCS4A01G008100 chr2B 92.708 96 7 0 1903 1998 103270391 103270296 7.290000e-29 139.0
42 TraesCS4A01G008100 chr3D 94.382 89 5 0 1903 1991 509255201 509255113 2.620000e-28 137.0
43 TraesCS4A01G008100 chr6D 94.318 88 5 0 1904 1991 139569818 139569731 9.430000e-28 135.0
44 TraesCS4A01G008100 chr6D 93.333 90 6 0 1906 1995 361523780 361523869 3.390000e-27 134.0
45 TraesCS4A01G008100 chr3B 91.000 100 9 0 1901 2000 237977242 237977341 9.430000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G008100 chr4A 4866492 4871889 5397 False 9969.000000 9969 100.000000 1 5398 1 chr4A.!!$F1 5397
1 TraesCS4A01G008100 chr4D 465559921 465564586 4665 True 1383.000000 3480 87.022500 1 5032 4 chr4D.!!$R2 5031
2 TraesCS4A01G008100 chr4D 465414795 465415340 545 True 459.000000 459 82.967000 4048 4556 1 chr4D.!!$R1 508
3 TraesCS4A01G008100 chr5B 515398255 515402096 3841 True 905.475000 2863 88.579250 992 4530 4 chr5B.!!$R1 3538
4 TraesCS4A01G008100 chr5A 540274317 540279187 4870 True 714.040000 2835 88.313800 992 4634 5 chr5A.!!$R1 3642
5 TraesCS4A01G008100 chr5D 425994451 425998381 3930 True 1153.666667 2796 83.495333 875 4634 3 chr5D.!!$R2 3759
6 TraesCS4A01G008100 chr4B 582357825 582366768 8943 True 934.500000 2784 87.409667 4 5398 6 chr4B.!!$R2 5394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 4492 0.105224 TCTGGCGGAAAAGTTCGACA 59.895 50.0 0.00 0.0 42.60 4.35 F
2681 8299 0.171007 GCACATGCCGCAGTTTGTAT 59.829 50.0 0.00 0.0 34.31 2.29 F
2903 8526 0.256752 TATGGGCAGTGCTGATTGCT 59.743 50.0 16.11 0.0 43.37 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2784 8407 1.187087 AGTAGCGAGGGAAGAACTGG 58.813 55.0 0.0 0.0 0.0 4.00 R
3673 9314 0.459899 ACGAGGATGTATGCAGCGAA 59.540 50.0 0.0 0.0 0.0 4.70 R
4771 10488 0.179097 GCTGGAGATCTGAACGGGTC 60.179 60.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.577606 ATCAACCACCGGAATGTTCA 57.422 45.000 9.46 0.00 0.00 3.18
85 86 4.768448 TGCAAGATTCATCACCATTGTTCT 59.232 37.500 0.00 0.00 0.00 3.01
86 87 5.106038 TGCAAGATTCATCACCATTGTTCTC 60.106 40.000 0.00 0.00 0.00 2.87
87 88 5.678107 GCAAGATTCATCACCATTGTTCTCC 60.678 44.000 0.00 0.00 0.00 3.71
88 89 5.447778 AGATTCATCACCATTGTTCTCCT 57.552 39.130 0.00 0.00 0.00 3.69
89 90 5.435291 AGATTCATCACCATTGTTCTCCTC 58.565 41.667 0.00 0.00 0.00 3.71
127 136 9.810545 GTCCTCCTCTATAATTATATGCAGAAC 57.189 37.037 5.64 0.00 0.00 3.01
143 156 5.178061 TGCAGAACTACATTCCACATAGTG 58.822 41.667 0.00 0.00 38.16 2.74
193 206 1.578897 TGGAGAATGTCGATTCCCCA 58.421 50.000 0.00 0.00 42.56 4.96
219 232 2.167693 GGAATTTCGGGGATGGGTTTTC 59.832 50.000 0.00 0.00 0.00 2.29
222 235 3.138128 CGGGGATGGGTTTTCGGC 61.138 66.667 0.00 0.00 0.00 5.54
234 247 2.544277 GGTTTTCGGCCGCTAACTTTTT 60.544 45.455 28.88 0.00 0.00 1.94
239 252 1.589630 GCCGCTAACTTTTTGGGGG 59.410 57.895 5.79 0.15 45.95 5.40
240 253 0.896479 GCCGCTAACTTTTTGGGGGA 60.896 55.000 7.85 0.00 46.05 4.81
241 254 1.847328 CCGCTAACTTTTTGGGGGAT 58.153 50.000 0.00 0.00 46.05 3.85
244 257 2.815158 GCTAACTTTTTGGGGGATGGA 58.185 47.619 0.00 0.00 0.00 3.41
293 3760 7.330208 GCCCATAATGCAGAAAATAGCTTAATG 59.670 37.037 0.00 0.00 0.00 1.90
295 3762 9.970395 CCATAATGCAGAAAATAGCTTAATGAA 57.030 29.630 0.00 0.00 0.00 2.57
304 3771 8.743714 AGAAAATAGCTTAATGAAGAAAGGGTG 58.256 33.333 0.00 0.00 34.25 4.61
345 3812 3.567797 GCGTCGATGGGCTGCTTC 61.568 66.667 6.79 0.00 0.00 3.86
410 3877 1.562783 GGAGTAGCCAGACCTTCAGT 58.437 55.000 0.00 0.00 36.34 3.41
463 3933 2.338620 GAAACCCAAGGTTGCGGC 59.661 61.111 0.00 0.00 46.20 6.53
464 3934 3.220999 GAAACCCAAGGTTGCGGCC 62.221 63.158 0.00 0.00 46.20 6.13
488 3958 3.719699 CCGTGGTGGCATGATTTTC 57.280 52.632 0.00 0.00 0.00 2.29
489 3959 0.887247 CCGTGGTGGCATGATTTTCA 59.113 50.000 0.00 0.00 0.00 2.69
490 3960 1.271934 CCGTGGTGGCATGATTTTCAA 59.728 47.619 0.00 0.00 0.00 2.69
491 3961 2.094078 CCGTGGTGGCATGATTTTCAAT 60.094 45.455 0.00 0.00 0.00 2.57
492 3962 3.587923 CGTGGTGGCATGATTTTCAATT 58.412 40.909 0.00 0.00 0.00 2.32
493 3963 3.995705 CGTGGTGGCATGATTTTCAATTT 59.004 39.130 0.00 0.00 0.00 1.82
494 3964 4.091800 CGTGGTGGCATGATTTTCAATTTC 59.908 41.667 0.00 0.00 0.00 2.17
495 3965 4.996122 GTGGTGGCATGATTTTCAATTTCA 59.004 37.500 0.00 0.00 0.00 2.69
496 3966 5.121142 GTGGTGGCATGATTTTCAATTTCAG 59.879 40.000 0.00 0.00 0.00 3.02
497 3967 5.221682 TGGTGGCATGATTTTCAATTTCAGT 60.222 36.000 0.00 0.00 0.00 3.41
498 3968 5.702209 GGTGGCATGATTTTCAATTTCAGTT 59.298 36.000 0.00 0.00 0.00 3.16
499 3969 6.205270 GGTGGCATGATTTTCAATTTCAGTTT 59.795 34.615 0.00 0.00 0.00 2.66
500 3970 7.293018 GTGGCATGATTTTCAATTTCAGTTTC 58.707 34.615 0.00 0.00 0.00 2.78
501 3971 6.990939 TGGCATGATTTTCAATTTCAGTTTCA 59.009 30.769 0.00 0.00 0.00 2.69
502 3972 7.171848 TGGCATGATTTTCAATTTCAGTTTCAG 59.828 33.333 0.00 0.00 0.00 3.02
503 3973 7.385752 GGCATGATTTTCAATTTCAGTTTCAGA 59.614 33.333 0.00 0.00 0.00 3.27
504 3974 8.767085 GCATGATTTTCAATTTCAGTTTCAGAA 58.233 29.630 0.00 0.00 0.00 3.02
514 3984 9.429600 CAATTTCAGTTTCAGAAAAATTTCAGC 57.570 29.630 8.47 0.00 38.36 4.26
515 3985 8.721019 ATTTCAGTTTCAGAAAAATTTCAGCA 57.279 26.923 8.47 0.00 38.36 4.41
516 3986 8.721019 TTTCAGTTTCAGAAAAATTTCAGCAT 57.279 26.923 8.47 0.00 39.61 3.79
517 3987 7.935338 TCAGTTTCAGAAAAATTTCAGCATC 57.065 32.000 8.47 0.00 39.61 3.91
518 3988 7.490840 TCAGTTTCAGAAAAATTTCAGCATCA 58.509 30.769 8.47 0.00 39.61 3.07
519 3989 7.980662 TCAGTTTCAGAAAAATTTCAGCATCAA 59.019 29.630 8.47 0.00 39.61 2.57
520 3990 8.060090 CAGTTTCAGAAAAATTTCAGCATCAAC 58.940 33.333 8.47 3.20 39.61 3.18
521 3991 7.225341 AGTTTCAGAAAAATTTCAGCATCAACC 59.775 33.333 8.47 0.00 39.61 3.77
522 3992 6.159299 TCAGAAAAATTTCAGCATCAACCA 57.841 33.333 8.47 0.00 39.61 3.67
523 3993 6.580788 TCAGAAAAATTTCAGCATCAACCAA 58.419 32.000 8.47 0.00 39.61 3.67
524 3994 7.046652 TCAGAAAAATTTCAGCATCAACCAAA 58.953 30.769 8.47 0.00 39.61 3.28
525 3995 7.551974 TCAGAAAAATTTCAGCATCAACCAAAA 59.448 29.630 8.47 0.00 39.61 2.44
526 3996 8.347035 CAGAAAAATTTCAGCATCAACCAAAAT 58.653 29.630 8.47 0.00 39.61 1.82
527 3997 8.562052 AGAAAAATTTCAGCATCAACCAAAATC 58.438 29.630 8.47 0.00 39.61 2.17
528 3998 7.804843 AAAATTTCAGCATCAACCAAAATCA 57.195 28.000 0.00 0.00 0.00 2.57
529 3999 6.790285 AATTTCAGCATCAACCAAAATCAC 57.210 33.333 0.00 0.00 0.00 3.06
530 4000 3.940209 TCAGCATCAACCAAAATCACC 57.060 42.857 0.00 0.00 0.00 4.02
531 4001 2.228582 TCAGCATCAACCAAAATCACCG 59.771 45.455 0.00 0.00 0.00 4.94
532 4002 2.228582 CAGCATCAACCAAAATCACCGA 59.771 45.455 0.00 0.00 0.00 4.69
533 4003 2.890311 AGCATCAACCAAAATCACCGAA 59.110 40.909 0.00 0.00 0.00 4.30
534 4004 3.320541 AGCATCAACCAAAATCACCGAAA 59.679 39.130 0.00 0.00 0.00 3.46
535 4005 4.021192 AGCATCAACCAAAATCACCGAAAT 60.021 37.500 0.00 0.00 0.00 2.17
536 4006 4.690280 GCATCAACCAAAATCACCGAAATT 59.310 37.500 0.00 0.00 0.00 1.82
537 4007 5.163963 GCATCAACCAAAATCACCGAAATTC 60.164 40.000 0.00 0.00 0.00 2.17
538 4008 5.521906 TCAACCAAAATCACCGAAATTCA 57.478 34.783 0.00 0.00 0.00 2.57
539 4009 5.527951 TCAACCAAAATCACCGAAATTCAG 58.472 37.500 0.00 0.00 0.00 3.02
540 4010 5.068460 TCAACCAAAATCACCGAAATTCAGT 59.932 36.000 0.00 0.00 0.00 3.41
541 4011 4.870363 ACCAAAATCACCGAAATTCAGTG 58.130 39.130 3.07 3.07 0.00 3.66
542 4012 4.582656 ACCAAAATCACCGAAATTCAGTGA 59.417 37.500 13.62 13.62 44.11 3.41
548 4018 5.611796 TCACCGAAATTCAGTGATTTCAG 57.388 39.130 7.87 14.05 43.12 3.02
549 4019 5.063204 TCACCGAAATTCAGTGATTTCAGT 58.937 37.500 7.87 14.47 43.12 3.41
550 4020 5.530915 TCACCGAAATTCAGTGATTTCAGTT 59.469 36.000 7.87 2.96 43.12 3.16
551 4021 6.039270 TCACCGAAATTCAGTGATTTCAGTTT 59.961 34.615 7.87 6.44 43.12 2.66
552 4022 6.360681 CACCGAAATTCAGTGATTTCAGTTTC 59.639 38.462 19.23 11.66 43.12 2.78
553 4023 5.858581 CCGAAATTCAGTGATTTCAGTTTCC 59.141 40.000 19.23 2.35 43.12 3.13
554 4024 6.437928 CGAAATTCAGTGATTTCAGTTTCCA 58.562 36.000 19.23 0.00 43.12 3.53
555 4025 7.086376 CGAAATTCAGTGATTTCAGTTTCCAT 58.914 34.615 19.23 0.00 43.12 3.41
556 4026 7.596248 CGAAATTCAGTGATTTCAGTTTCCATT 59.404 33.333 19.23 2.26 43.12 3.16
557 4027 9.264719 GAAATTCAGTGATTTCAGTTTCCATTT 57.735 29.630 16.58 6.84 42.71 2.32
558 4028 8.822652 AATTCAGTGATTTCAGTTTCCATTTC 57.177 30.769 0.00 0.00 0.00 2.17
559 4029 6.957920 TCAGTGATTTCAGTTTCCATTTCA 57.042 33.333 0.00 0.00 0.00 2.69
560 4030 6.973843 TCAGTGATTTCAGTTTCCATTTCAG 58.026 36.000 0.00 0.00 0.00 3.02
561 4031 5.632347 CAGTGATTTCAGTTTCCATTTCAGC 59.368 40.000 0.00 0.00 0.00 4.26
562 4032 4.618489 GTGATTTCAGTTTCCATTTCAGCG 59.382 41.667 0.00 0.00 0.00 5.18
563 4033 4.278170 TGATTTCAGTTTCCATTTCAGCGT 59.722 37.500 0.00 0.00 0.00 5.07
564 4034 5.471797 TGATTTCAGTTTCCATTTCAGCGTA 59.528 36.000 0.00 0.00 0.00 4.42
565 4035 5.759506 TTTCAGTTTCCATTTCAGCGTAA 57.240 34.783 0.00 0.00 0.00 3.18
566 4036 5.957842 TTCAGTTTCCATTTCAGCGTAAT 57.042 34.783 0.00 0.00 0.00 1.89
567 4037 5.295431 TCAGTTTCCATTTCAGCGTAATG 57.705 39.130 0.00 0.00 33.72 1.90
568 4038 5.000591 TCAGTTTCCATTTCAGCGTAATGA 58.999 37.500 9.21 0.00 35.49 2.57
569 4039 5.088739 CAGTTTCCATTTCAGCGTAATGAC 58.911 41.667 9.21 2.18 35.49 3.06
570 4040 5.003804 AGTTTCCATTTCAGCGTAATGACT 58.996 37.500 9.21 3.92 35.49 3.41
571 4041 4.944962 TTCCATTTCAGCGTAATGACTG 57.055 40.909 9.21 0.00 35.49 3.51
572 4042 4.200838 TCCATTTCAGCGTAATGACTGA 57.799 40.909 9.21 0.00 41.06 3.41
580 4050 7.841915 TTCAGCGTAATGACTGAAATATTCA 57.158 32.000 3.10 0.00 46.89 2.57
581 4051 7.234187 TCAGCGTAATGACTGAAATATTCAC 57.766 36.000 0.00 0.00 39.89 3.18
582 4052 7.041721 TCAGCGTAATGACTGAAATATTCACT 58.958 34.615 0.00 0.00 39.89 3.41
583 4053 7.549134 TCAGCGTAATGACTGAAATATTCACTT 59.451 33.333 0.00 0.00 39.89 3.16
584 4054 7.637519 CAGCGTAATGACTGAAATATTCACTTG 59.362 37.037 0.00 0.00 35.90 3.16
585 4055 7.549134 AGCGTAATGACTGAAATATTCACTTGA 59.451 33.333 0.00 0.00 35.46 3.02
586 4056 8.175069 GCGTAATGACTGAAATATTCACTTGAA 58.825 33.333 0.00 0.00 38.56 2.69
650 4120 6.811253 TTTTTGGAATTGTCGTGCTATACT 57.189 33.333 0.00 0.00 0.00 2.12
651 4121 5.794687 TTTGGAATTGTCGTGCTATACTG 57.205 39.130 0.00 0.00 0.00 2.74
652 4122 4.729227 TGGAATTGTCGTGCTATACTGA 57.271 40.909 0.00 0.00 0.00 3.41
653 4123 5.079689 TGGAATTGTCGTGCTATACTGAA 57.920 39.130 0.00 0.00 0.00 3.02
654 4124 5.483811 TGGAATTGTCGTGCTATACTGAAA 58.516 37.500 0.00 0.00 0.00 2.69
655 4125 6.112734 TGGAATTGTCGTGCTATACTGAAAT 58.887 36.000 0.00 0.00 0.00 2.17
656 4126 6.597672 TGGAATTGTCGTGCTATACTGAAATT 59.402 34.615 0.00 0.00 0.00 1.82
657 4127 6.907212 GGAATTGTCGTGCTATACTGAAATTG 59.093 38.462 0.00 0.00 0.00 2.32
658 4128 6.985188 ATTGTCGTGCTATACTGAAATTGT 57.015 33.333 0.00 0.00 0.00 2.71
659 4129 6.795098 TTGTCGTGCTATACTGAAATTGTT 57.205 33.333 0.00 0.00 0.00 2.83
660 4130 6.164408 TGTCGTGCTATACTGAAATTGTTG 57.836 37.500 0.00 0.00 0.00 3.33
661 4131 5.929415 TGTCGTGCTATACTGAAATTGTTGA 59.071 36.000 0.00 0.00 0.00 3.18
662 4132 6.425417 TGTCGTGCTATACTGAAATTGTTGAA 59.575 34.615 0.00 0.00 0.00 2.69
663 4133 7.041712 TGTCGTGCTATACTGAAATTGTTGAAA 60.042 33.333 0.00 0.00 0.00 2.69
664 4134 7.962918 GTCGTGCTATACTGAAATTGTTGAAAT 59.037 33.333 0.00 0.00 0.00 2.17
665 4135 9.157104 TCGTGCTATACTGAAATTGTTGAAATA 57.843 29.630 0.00 0.00 0.00 1.40
666 4136 9.935682 CGTGCTATACTGAAATTGTTGAAATAT 57.064 29.630 0.00 0.00 0.00 1.28
673 4143 8.098220 ACTGAAATTGTTGAAATATTTTGGCC 57.902 30.769 1.43 0.00 0.00 5.36
674 4144 7.095271 ACTGAAATTGTTGAAATATTTTGGCCG 60.095 33.333 1.43 0.00 0.00 6.13
675 4145 6.931281 TGAAATTGTTGAAATATTTTGGCCGA 59.069 30.769 1.43 0.00 0.00 5.54
676 4146 7.442364 TGAAATTGTTGAAATATTTTGGCCGAA 59.558 29.630 0.00 0.00 0.00 4.30
677 4147 7.736447 AATTGTTGAAATATTTTGGCCGAAA 57.264 28.000 20.60 20.60 0.00 3.46
678 4148 6.532365 TTGTTGAAATATTTTGGCCGAAAC 57.468 33.333 20.75 8.10 0.00 2.78
679 4149 4.681942 TGTTGAAATATTTTGGCCGAAACG 59.318 37.500 20.75 0.00 0.00 3.60
680 4150 4.506886 TGAAATATTTTGGCCGAAACGT 57.493 36.364 20.75 8.51 0.00 3.99
681 4151 5.624344 TGAAATATTTTGGCCGAAACGTA 57.376 34.783 20.75 10.53 0.00 3.57
682 4152 6.010294 TGAAATATTTTGGCCGAAACGTAA 57.990 33.333 20.75 7.15 0.00 3.18
683 4153 6.622549 TGAAATATTTTGGCCGAAACGTAAT 58.377 32.000 20.75 7.01 0.00 1.89
684 4154 7.759465 TGAAATATTTTGGCCGAAACGTAATA 58.241 30.769 20.75 9.08 0.00 0.98
685 4155 8.407064 TGAAATATTTTGGCCGAAACGTAATAT 58.593 29.630 20.75 10.96 0.00 1.28
686 4156 9.240159 GAAATATTTTGGCCGAAACGTAATATT 57.760 29.630 20.75 15.83 31.57 1.28
687 4157 9.589111 AAATATTTTGGCCGAAACGTAATATTT 57.411 25.926 20.75 19.98 34.43 1.40
688 4158 8.791355 ATATTTTGGCCGAAACGTAATATTTC 57.209 30.769 20.75 0.00 33.52 2.17
689 4159 5.624344 TTTGGCCGAAACGTAATATTTCA 57.376 34.783 1.75 0.00 36.09 2.69
690 4160 4.868450 TGGCCGAAACGTAATATTTCAG 57.132 40.909 0.00 0.00 36.09 3.02
691 4161 4.255301 TGGCCGAAACGTAATATTTCAGT 58.745 39.130 0.00 0.00 36.09 3.41
692 4162 4.093703 TGGCCGAAACGTAATATTTCAGTG 59.906 41.667 0.00 0.00 36.09 3.66
693 4163 4.093850 GGCCGAAACGTAATATTTCAGTGT 59.906 41.667 0.00 0.00 36.09 3.55
694 4164 5.253335 GCCGAAACGTAATATTTCAGTGTC 58.747 41.667 0.00 0.00 36.09 3.67
695 4165 5.063060 GCCGAAACGTAATATTTCAGTGTCT 59.937 40.000 0.00 0.00 36.09 3.41
696 4166 6.466812 CCGAAACGTAATATTTCAGTGTCTG 58.533 40.000 0.00 0.00 36.09 3.51
697 4167 5.952064 CGAAACGTAATATTTCAGTGTCTGC 59.048 40.000 0.00 0.00 36.09 4.26
698 4168 5.796350 AACGTAATATTTCAGTGTCTGCC 57.204 39.130 0.00 0.00 0.00 4.85
699 4169 3.863424 ACGTAATATTTCAGTGTCTGCCG 59.137 43.478 0.00 0.00 0.00 5.69
700 4170 4.109766 CGTAATATTTCAGTGTCTGCCGA 58.890 43.478 0.00 0.00 0.00 5.54
701 4171 4.565166 CGTAATATTTCAGTGTCTGCCGAA 59.435 41.667 0.00 0.00 0.00 4.30
702 4172 5.062934 CGTAATATTTCAGTGTCTGCCGAAA 59.937 40.000 0.00 0.00 0.00 3.46
703 4173 6.238103 CGTAATATTTCAGTGTCTGCCGAAAT 60.238 38.462 0.00 0.00 40.30 2.17
704 4174 6.515272 AATATTTCAGTGTCTGCCGAAATT 57.485 33.333 0.00 0.00 38.61 1.82
705 4175 7.624360 AATATTTCAGTGTCTGCCGAAATTA 57.376 32.000 0.00 0.00 38.61 1.40
706 4176 7.807977 ATATTTCAGTGTCTGCCGAAATTAT 57.192 32.000 0.00 0.00 38.61 1.28
707 4177 5.957842 TTTCAGTGTCTGCCGAAATTATT 57.042 34.783 0.00 0.00 0.00 1.40
708 4178 4.944962 TCAGTGTCTGCCGAAATTATTG 57.055 40.909 0.00 0.00 0.00 1.90
709 4179 4.574892 TCAGTGTCTGCCGAAATTATTGA 58.425 39.130 0.00 0.00 0.00 2.57
710 4180 5.000591 TCAGTGTCTGCCGAAATTATTGAA 58.999 37.500 0.00 0.00 0.00 2.69
711 4181 5.471797 TCAGTGTCTGCCGAAATTATTGAAA 59.528 36.000 0.00 0.00 0.00 2.69
712 4182 6.150976 TCAGTGTCTGCCGAAATTATTGAAAT 59.849 34.615 0.00 0.00 0.00 2.17
713 4183 6.808212 CAGTGTCTGCCGAAATTATTGAAATT 59.192 34.615 0.00 0.00 0.00 1.82
714 4184 7.967854 CAGTGTCTGCCGAAATTATTGAAATTA 59.032 33.333 0.00 0.00 0.00 1.40
715 4185 8.519526 AGTGTCTGCCGAAATTATTGAAATTAA 58.480 29.630 0.00 0.00 0.00 1.40
716 4186 8.798153 GTGTCTGCCGAAATTATTGAAATTAAG 58.202 33.333 0.00 0.00 0.00 1.85
717 4187 8.519526 TGTCTGCCGAAATTATTGAAATTAAGT 58.480 29.630 0.00 0.00 0.00 2.24
718 4188 8.798153 GTCTGCCGAAATTATTGAAATTAAGTG 58.202 33.333 0.00 0.00 0.00 3.16
719 4189 8.735315 TCTGCCGAAATTATTGAAATTAAGTGA 58.265 29.630 0.00 0.00 0.00 3.41
720 4190 9.352784 CTGCCGAAATTATTGAAATTAAGTGAA 57.647 29.630 0.00 0.00 0.00 3.18
721 4191 9.868277 TGCCGAAATTATTGAAATTAAGTGAAT 57.132 25.926 0.00 0.00 0.00 2.57
739 4209 8.511465 AAGTGAATTTCAACGAAATCTCATTG 57.489 30.769 0.00 0.00 40.77 2.82
740 4210 7.874940 AGTGAATTTCAACGAAATCTCATTGA 58.125 30.769 0.00 0.00 40.77 2.57
741 4211 8.352201 AGTGAATTTCAACGAAATCTCATTGAA 58.648 29.630 0.00 0.00 40.77 2.69
745 4215 7.912949 TTTCAACGAAATCTCATTGAAAGTG 57.087 32.000 0.00 0.00 42.91 3.16
746 4216 6.859420 TCAACGAAATCTCATTGAAAGTGA 57.141 33.333 0.00 0.00 0.00 3.41
747 4217 7.258022 TCAACGAAATCTCATTGAAAGTGAA 57.742 32.000 0.00 0.00 0.00 3.18
748 4218 7.702386 TCAACGAAATCTCATTGAAAGTGAAA 58.298 30.769 0.00 0.00 0.00 2.69
749 4219 8.187480 TCAACGAAATCTCATTGAAAGTGAAAA 58.813 29.630 0.00 0.00 0.00 2.29
750 4220 7.914537 ACGAAATCTCATTGAAAGTGAAAAC 57.085 32.000 0.00 0.00 0.00 2.43
751 4221 6.918022 ACGAAATCTCATTGAAAGTGAAAACC 59.082 34.615 0.00 0.00 0.00 3.27
752 4222 6.917477 CGAAATCTCATTGAAAGTGAAAACCA 59.083 34.615 0.00 0.00 0.00 3.67
753 4223 7.596248 CGAAATCTCATTGAAAGTGAAAACCAT 59.404 33.333 0.00 0.00 0.00 3.55
754 4224 8.597662 AAATCTCATTGAAAGTGAAAACCATG 57.402 30.769 0.00 0.00 0.00 3.66
759 4229 2.685388 TGAAAGTGAAAACCATGCGTGA 59.315 40.909 7.72 0.00 0.00 4.35
777 4247 3.372206 CGTGATGGAATGTCTCAGGAAAC 59.628 47.826 0.00 0.00 0.00 2.78
816 4286 1.098712 TTGCAACTGGACCCGTCAAC 61.099 55.000 0.00 0.00 0.00 3.18
827 4297 1.068417 CCGTCAACGACCCTGACAA 59.932 57.895 3.71 0.00 42.80 3.18
879 4351 0.250234 TTGGATCCCAACAGAGAGCG 59.750 55.000 9.90 0.00 38.75 5.03
900 4372 2.123854 CTCCTCCGTCCCCATCGA 60.124 66.667 0.00 0.00 0.00 3.59
962 4454 2.444895 CTAGCTCCGCCCCTTCCT 60.445 66.667 0.00 0.00 0.00 3.36
982 4474 2.445654 CTCCCTCCCTCCTCTGGC 60.446 72.222 0.00 0.00 0.00 4.85
996 4492 0.105224 TCTGGCGGAAAAGTTCGACA 59.895 50.000 0.00 0.00 42.60 4.35
1220 4927 6.473397 AGCTGTTCGTTATTCTTCTTCTTG 57.527 37.500 0.00 0.00 0.00 3.02
1266 4973 3.741805 GTTGCAAACGGAGGTATTCTC 57.258 47.619 0.00 0.00 36.92 2.87
1272 4979 4.330347 GCAAACGGAGGTATTCTCTTCTTC 59.670 45.833 0.00 0.00 42.10 2.87
1273 4980 5.725362 CAAACGGAGGTATTCTCTTCTTCT 58.275 41.667 0.00 0.00 42.10 2.85
1274 4981 6.166982 CAAACGGAGGTATTCTCTTCTTCTT 58.833 40.000 0.00 0.00 42.10 2.52
1331 5944 4.640789 ACTGTAGAACGAAGCCATCTAG 57.359 45.455 0.00 0.00 0.00 2.43
1332 5945 4.017808 ACTGTAGAACGAAGCCATCTAGT 58.982 43.478 0.00 0.00 0.00 2.57
1333 5946 5.191426 ACTGTAGAACGAAGCCATCTAGTA 58.809 41.667 0.00 0.00 0.00 1.82
1347 5960 7.465116 AGCCATCTAGTATTTCCTAAATGCAT 58.535 34.615 0.00 0.00 36.15 3.96
1348 5961 7.392673 AGCCATCTAGTATTTCCTAAATGCATG 59.607 37.037 0.00 0.00 36.15 4.06
1350 5963 9.071276 CCATCTAGTATTTCCTAAATGCATGTT 57.929 33.333 0.00 0.00 36.15 2.71
1367 5990 6.146216 TGCATGTTAATTGTTAAGGAACGTG 58.854 36.000 0.00 0.00 38.51 4.49
1369 5992 6.304683 GCATGTTAATTGTTAAGGAACGTGAC 59.695 38.462 10.12 0.00 38.66 3.67
1375 5998 2.168936 TGTTAAGGAACGTGACACAGGT 59.831 45.455 6.37 0.00 38.51 4.00
1406 6029 8.482429 GTTTCATCAGCTTTCAGTGTTATTTTG 58.518 33.333 0.00 0.00 0.00 2.44
1427 6050 5.762179 TGGTTGAGATCTGACCTTGTATT 57.238 39.130 20.13 0.00 34.52 1.89
1518 6141 5.810525 CCACGAGATGGTATTGATTGTTTC 58.189 41.667 0.00 0.00 44.46 2.78
1519 6142 5.586243 CCACGAGATGGTATTGATTGTTTCT 59.414 40.000 0.00 0.00 44.46 2.52
1554 6182 9.860898 ATTTTATCTGTTTTCTCCTATTGCAAC 57.139 29.630 0.00 0.00 0.00 4.17
1563 6191 8.515414 GTTTTCTCCTATTGCAACTAACTTCAT 58.485 33.333 0.00 0.00 0.00 2.57
1565 6193 6.946340 TCTCCTATTGCAACTAACTTCATGA 58.054 36.000 0.00 0.00 0.00 3.07
1655 6285 2.355010 AGCTGCCATCCAGTTTATCC 57.645 50.000 0.00 0.00 43.71 2.59
1669 6299 5.393461 CCAGTTTATCCTGCTGATTTGGTTC 60.393 44.000 0.00 0.00 34.76 3.62
1672 6302 2.978156 TCCTGCTGATTTGGTTCCTT 57.022 45.000 0.00 0.00 0.00 3.36
1702 6332 0.984230 TTCCTCGCCCTGATGTCTTT 59.016 50.000 0.00 0.00 0.00 2.52
1703 6333 0.250234 TCCTCGCCCTGATGTCTTTG 59.750 55.000 0.00 0.00 0.00 2.77
1708 6338 1.197721 CGCCCTGATGTCTTTGTTGTC 59.802 52.381 0.00 0.00 0.00 3.18
1717 6347 5.298276 TGATGTCTTTGTTGTCCAGGTAAAC 59.702 40.000 0.00 0.00 0.00 2.01
1718 6348 4.590918 TGTCTTTGTTGTCCAGGTAAACA 58.409 39.130 5.81 5.81 32.19 2.83
1720 6350 5.654650 TGTCTTTGTTGTCCAGGTAAACATT 59.345 36.000 9.61 0.00 34.04 2.71
1721 6351 6.829298 TGTCTTTGTTGTCCAGGTAAACATTA 59.171 34.615 9.61 2.98 34.04 1.90
1722 6352 7.504238 TGTCTTTGTTGTCCAGGTAAACATTAT 59.496 33.333 9.61 0.00 34.04 1.28
1723 6353 7.807907 GTCTTTGTTGTCCAGGTAAACATTATG 59.192 37.037 9.61 0.00 34.04 1.90
1724 6354 7.504238 TCTTTGTTGTCCAGGTAAACATTATGT 59.496 33.333 9.61 0.00 34.04 2.29
1725 6355 7.589958 TTGTTGTCCAGGTAAACATTATGTT 57.410 32.000 4.56 4.56 43.41 2.71
1730 6360 4.947388 TCCAGGTAAACATTATGTTCAGCC 59.053 41.667 11.24 12.72 40.14 4.85
1733 6363 6.071391 CCAGGTAAACATTATGTTCAGCCTTT 60.071 38.462 18.39 4.15 40.14 3.11
1735 6365 7.329226 CAGGTAAACATTATGTTCAGCCTTTTG 59.671 37.037 18.39 9.96 40.14 2.44
1743 6373 3.456280 TGTTCAGCCTTTTGATTTGCAC 58.544 40.909 0.00 0.00 0.00 4.57
1751 6381 3.742369 CCTTTTGATTTGCACATGTGGTC 59.258 43.478 26.55 11.90 0.00 4.02
1771 6401 7.336679 TGTGGTCCAGAATTACATGAACAATAG 59.663 37.037 0.00 0.00 0.00 1.73
1774 6404 7.201732 GGTCCAGAATTACATGAACAATAGGTG 60.202 40.741 0.00 0.00 0.00 4.00
1776 6406 7.336679 TCCAGAATTACATGAACAATAGGTGTG 59.663 37.037 0.00 0.00 40.60 3.82
1777 6407 6.968904 CAGAATTACATGAACAATAGGTGTGC 59.031 38.462 0.00 0.00 40.60 4.57
1778 6408 5.835113 ATTACATGAACAATAGGTGTGCC 57.165 39.130 0.00 0.00 40.60 5.01
1779 6409 2.446435 ACATGAACAATAGGTGTGCCC 58.554 47.619 0.00 0.00 40.60 5.36
1782 6412 2.235016 TGAACAATAGGTGTGCCCAAC 58.765 47.619 0.00 0.00 40.60 3.77
1791 6421 1.149627 TGTGCCCAACCACTACCAC 59.850 57.895 0.00 0.00 36.68 4.16
1793 6423 0.179001 GTGCCCAACCACTACCACTT 60.179 55.000 0.00 0.00 33.02 3.16
1806 6436 6.149633 CCACTACCACTTTCAGCAAATTTAC 58.850 40.000 0.00 0.00 0.00 2.01
1843 6475 8.457261 AGAATTTGACAATCTAGAGTTCATTGC 58.543 33.333 0.00 0.00 31.74 3.56
1847 6479 5.121380 ACAATCTAGAGTTCATTGCCCAT 57.879 39.130 0.00 0.00 31.74 4.00
1853 6485 1.752498 GAGTTCATTGCCCATCATGCA 59.248 47.619 0.00 0.00 36.84 3.96
1884 6551 9.851686 AAATGAATAGTCATAGTTGGCTTATCA 57.148 29.630 6.03 0.00 44.02 2.15
1889 6556 4.818546 AGTCATAGTTGGCTTATCATGCAC 59.181 41.667 0.00 0.00 32.61 4.57
1898 6572 5.368145 TGGCTTATCATGCACCTTAAGTAG 58.632 41.667 0.97 0.00 0.00 2.57
1899 6573 5.104527 TGGCTTATCATGCACCTTAAGTAGT 60.105 40.000 0.97 0.00 0.00 2.73
1900 6574 6.099125 TGGCTTATCATGCACCTTAAGTAGTA 59.901 38.462 0.97 0.00 0.00 1.82
1901 6575 6.990349 GGCTTATCATGCACCTTAAGTAGTAA 59.010 38.462 0.97 0.00 0.00 2.24
1902 6576 7.041984 GGCTTATCATGCACCTTAAGTAGTAAC 60.042 40.741 0.97 0.00 0.00 2.50
1903 6577 7.494625 GCTTATCATGCACCTTAAGTAGTAACA 59.505 37.037 0.97 0.00 0.00 2.41
1904 6578 9.378551 CTTATCATGCACCTTAAGTAGTAACAA 57.621 33.333 0.97 0.00 0.00 2.83
1905 6579 9.727859 TTATCATGCACCTTAAGTAGTAACAAA 57.272 29.630 0.97 0.00 0.00 2.83
1906 6580 8.807948 ATCATGCACCTTAAGTAGTAACAAAT 57.192 30.769 0.97 0.00 0.00 2.32
1907 6581 9.899661 ATCATGCACCTTAAGTAGTAACAAATA 57.100 29.630 0.97 0.00 0.00 1.40
1908 6582 9.158233 TCATGCACCTTAAGTAGTAACAAATAC 57.842 33.333 0.97 0.00 34.52 1.89
1909 6583 9.162764 CATGCACCTTAAGTAGTAACAAATACT 57.837 33.333 0.97 0.00 46.62 2.12
1910 6584 8.767478 TGCACCTTAAGTAGTAACAAATACTC 57.233 34.615 0.97 0.00 43.87 2.59
1911 6585 7.820872 TGCACCTTAAGTAGTAACAAATACTCC 59.179 37.037 0.97 0.00 43.87 3.85
1912 6586 7.279536 GCACCTTAAGTAGTAACAAATACTCCC 59.720 40.741 0.97 0.00 43.87 4.30
1913 6587 8.537858 CACCTTAAGTAGTAACAAATACTCCCT 58.462 37.037 0.97 0.00 43.87 4.20
1914 6588 8.756927 ACCTTAAGTAGTAACAAATACTCCCTC 58.243 37.037 0.97 0.00 43.87 4.30
1915 6589 8.202811 CCTTAAGTAGTAACAAATACTCCCTCC 58.797 40.741 0.97 0.00 43.87 4.30
1916 6590 5.848833 AGTAGTAACAAATACTCCCTCCG 57.151 43.478 0.00 0.00 43.87 4.63
1917 6591 5.267587 AGTAGTAACAAATACTCCCTCCGT 58.732 41.667 0.00 0.00 43.87 4.69
1918 6592 4.732672 AGTAACAAATACTCCCTCCGTC 57.267 45.455 0.00 0.00 41.04 4.79
1919 6593 3.450096 AGTAACAAATACTCCCTCCGTCC 59.550 47.826 0.00 0.00 41.04 4.79
1920 6594 1.201424 ACAAATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
1921 6595 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
1922 6596 1.768870 CAAATACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
1923 6597 2.969950 CAAATACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
1924 6598 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
1925 6599 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
1926 6600 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1927 6601 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1928 6602 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1929 6603 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1930 6604 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1931 6605 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1932 6606 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1934 6608 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1935 6609 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1936 6610 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1937 6611 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1938 6612 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1981 6655 6.721571 AAAAGCGTCGTATATTATGGGATG 57.278 37.500 0.00 0.00 0.00 3.51
1982 6656 4.386867 AGCGTCGTATATTATGGGATGG 57.613 45.455 0.00 0.00 0.00 3.51
1983 6657 4.021229 AGCGTCGTATATTATGGGATGGA 58.979 43.478 0.00 0.00 0.00 3.41
1984 6658 4.098044 AGCGTCGTATATTATGGGATGGAG 59.902 45.833 0.00 0.00 0.00 3.86
1985 6659 4.736759 GCGTCGTATATTATGGGATGGAGG 60.737 50.000 0.00 0.00 0.00 4.30
1986 6660 4.202121 CGTCGTATATTATGGGATGGAGGG 60.202 50.000 0.00 0.00 0.00 4.30
1987 6661 4.960469 GTCGTATATTATGGGATGGAGGGA 59.040 45.833 0.00 0.00 0.00 4.20
1988 6662 5.069251 GTCGTATATTATGGGATGGAGGGAG 59.931 48.000 0.00 0.00 0.00 4.30
1989 6663 4.962995 CGTATATTATGGGATGGAGGGAGT 59.037 45.833 0.00 0.00 0.00 3.85
1990 6664 6.068676 TCGTATATTATGGGATGGAGGGAGTA 60.069 42.308 0.00 0.00 0.00 2.59
2000 6725 5.246429 GGGATGGAGGGAGTACTAAATAGTG 59.754 48.000 0.00 0.00 37.10 2.74
2011 6736 8.077386 GGAGTACTAAATAGTGACTCATGCTAC 58.923 40.741 19.83 4.68 37.94 3.58
2020 6745 3.804325 GTGACTCATGCTACGCAATATGT 59.196 43.478 0.00 0.00 43.62 2.29
2021 6746 4.982295 GTGACTCATGCTACGCAATATGTA 59.018 41.667 0.00 0.00 43.62 2.29
2022 6747 5.635280 GTGACTCATGCTACGCAATATGTAT 59.365 40.000 0.00 0.00 43.62 2.29
2023 6748 6.146184 GTGACTCATGCTACGCAATATGTATT 59.854 38.462 0.00 0.00 43.62 1.89
2024 6749 6.705825 TGACTCATGCTACGCAATATGTATTT 59.294 34.615 0.00 0.00 43.62 1.40
2036 6761 7.011109 ACGCAATATGTATTTTACAGTGACCTC 59.989 37.037 0.00 0.00 42.77 3.85
2055 6780 5.308825 ACCTCTTGTTTACACCATTCTCAG 58.691 41.667 0.00 0.00 0.00 3.35
2063 6788 2.233271 ACACCATTCTCAGTTTGGCAG 58.767 47.619 0.00 0.00 33.66 4.85
2070 6795 0.873054 CTCAGTTTGGCAGTGCTGAG 59.127 55.000 21.60 21.60 45.64 3.35
2105 7095 3.875134 ACAAAGTTGTTTACTCTGACCCG 59.125 43.478 0.00 0.00 38.47 5.28
2108 7098 5.479124 AAGTTGTTTACTCTGACCCGTAT 57.521 39.130 0.00 0.00 35.54 3.06
2114 7104 6.624423 TGTTTACTCTGACCCGTATTTAGTC 58.376 40.000 0.00 0.00 0.00 2.59
2117 7107 4.342359 ACTCTGACCCGTATTTAGTCACT 58.658 43.478 0.00 0.00 35.67 3.41
2124 7114 7.788026 TGACCCGTATTTAGTCACTGAATATT 58.212 34.615 5.38 0.00 35.67 1.28
2127 7117 8.142551 ACCCGTATTTAGTCACTGAATATTCTC 58.857 37.037 16.24 2.92 27.74 2.87
2138 7128 6.838090 TCACTGAATATTCTCCAGTCTCATCT 59.162 38.462 16.24 0.00 38.93 2.90
2155 7145 9.930693 AGTCTCATCTCGTTAAGTTTTTAATCT 57.069 29.630 0.00 0.00 31.81 2.40
2168 7158 8.912614 AAGTTTTTAATCTCCTAGAGTCCCTA 57.087 34.615 0.00 0.00 0.00 3.53
2249 7601 6.437928 TCACATTTTGCAGTAACAATGAGAC 58.562 36.000 10.03 0.00 32.07 3.36
2277 7629 6.680810 TGATTTGTGTCATTTGACCATCTTC 58.319 36.000 8.16 1.85 44.15 2.87
2302 7654 0.613777 AACAGAATCCACCCTCCGTC 59.386 55.000 0.00 0.00 0.00 4.79
2326 7678 4.022416 CCAACATTGGCTGCTGTAAAACTA 60.022 41.667 0.00 0.00 42.21 2.24
2383 7735 6.429692 TGGATTGGCATAACTTTGGATATACG 59.570 38.462 0.00 0.00 0.00 3.06
2386 7738 8.911918 ATTGGCATAACTTTGGATATACGTTA 57.088 30.769 0.00 0.00 0.00 3.18
2459 7811 2.999185 ATCCCTCCAACCATGTTTGT 57.001 45.000 2.07 0.00 0.00 2.83
2462 7814 2.697751 TCCCTCCAACCATGTTTGTTTG 59.302 45.455 2.07 0.00 0.00 2.93
2476 8079 2.169832 TGTTTGTCTGCTAGACTGCC 57.830 50.000 14.60 5.73 45.27 4.85
2489 8092 5.888724 TGCTAGACTGCCAGTATATCCTATC 59.111 44.000 0.00 0.00 0.00 2.08
2506 8109 7.730364 ATCCTATCGGTCATGTGTTTTAATC 57.270 36.000 0.00 0.00 0.00 1.75
2608 8211 2.473984 GCAACATGAGCTTGCTCAAAAC 59.526 45.455 26.00 12.31 40.79 2.43
2637 8240 7.809806 GGGAATCAAGTAAACAGATTGAACTTG 59.190 37.037 7.09 7.09 45.29 3.16
2670 8288 2.697992 AAGGCGTTTGTGCACATGCC 62.698 55.000 33.86 33.86 41.18 4.40
2681 8299 0.171007 GCACATGCCGCAGTTTGTAT 59.829 50.000 0.00 0.00 34.31 2.29
2715 8338 6.238731 CCACAATTTTCAGAGCAACAGTTCTA 60.239 38.462 0.00 0.00 0.00 2.10
2752 8375 3.515104 TGAATTTTTCCATCCTGCTTCCC 59.485 43.478 0.00 0.00 0.00 3.97
2834 8457 7.066307 ACTGCATATCAACATATGTGACCTA 57.934 36.000 9.63 0.00 42.84 3.08
2837 8460 8.382030 TGCATATCAACATATGTGACCTAAAG 57.618 34.615 9.63 0.00 42.84 1.85
2867 8490 0.668535 GTTGTTCTGCAGGTTGGGTC 59.331 55.000 15.13 0.00 0.00 4.46
2903 8526 0.256752 TATGGGCAGTGCTGATTGCT 59.743 50.000 16.11 0.00 43.37 3.91
2928 8552 4.641396 TCTGTTGGTATGTTGTTCTCCAG 58.359 43.478 0.00 0.00 0.00 3.86
2974 8606 9.066892 TGGTATAAGCATATTCCAGTTTGATTC 57.933 33.333 3.45 0.00 34.94 2.52
2980 8612 9.729281 AAGCATATTCCAGTTTGATTCATTTTT 57.271 25.926 0.00 0.00 0.00 1.94
2981 8613 9.374838 AGCATATTCCAGTTTGATTCATTTTTC 57.625 29.630 0.00 0.00 0.00 2.29
3021 8656 5.880341 ACAAAGAAAAAGAAGTGGAAGACG 58.120 37.500 0.00 0.00 0.00 4.18
3034 8669 2.030185 TGGAAGACGAGAACACTACTGC 60.030 50.000 0.00 0.00 0.00 4.40
3035 8670 2.229302 GGAAGACGAGAACACTACTGCT 59.771 50.000 0.00 0.00 0.00 4.24
3071 8706 5.667539 TTGATGGTGGAGTTTTGTTGAAA 57.332 34.783 0.00 0.00 0.00 2.69
3127 8762 4.353777 AGCTGGTATGTTCTCTTGGACTA 58.646 43.478 0.00 0.00 0.00 2.59
3143 8778 3.402628 GACTAAGTGGTCCTTCTTGCA 57.597 47.619 9.20 0.00 34.46 4.08
3149 8784 1.876156 GTGGTCCTTCTTGCAGAACTG 59.124 52.381 0.00 0.00 29.89 3.16
3153 8790 3.381590 GGTCCTTCTTGCAGAACTGTTTT 59.618 43.478 0.00 0.00 29.89 2.43
3156 8793 4.114794 CCTTCTTGCAGAACTGTTTTTGG 58.885 43.478 0.00 0.00 29.89 3.28
3166 8803 2.722094 ACTGTTTTTGGTCAGCTCACA 58.278 42.857 0.00 0.00 35.37 3.58
3174 8811 6.441093 TTTTGGTCAGCTCACATGATTATC 57.559 37.500 0.00 0.00 0.00 1.75
3197 8836 7.177832 TCGAGTGGATAGTTAAAATGAGGAA 57.822 36.000 0.00 0.00 0.00 3.36
3242 8881 3.139850 GCATTCCAGGACATCAGATGAG 58.860 50.000 17.81 4.03 0.00 2.90
3258 8897 6.656902 TCAGATGAGGATTTCAGCATACTTT 58.343 36.000 0.00 0.00 44.66 2.66
3278 8917 2.099141 TGGAAGCAGCACTGATGTAC 57.901 50.000 0.81 0.00 0.00 2.90
3287 8926 2.044860 GCACTGATGTACGATAGACGC 58.955 52.381 0.00 0.00 46.94 5.19
3296 8935 1.874019 CGATAGACGCGTTGCTGCT 60.874 57.895 15.53 8.08 39.76 4.24
3380 9019 8.257306 GGAAAGCAATTTGATTACCCAAGATTA 58.743 33.333 0.00 0.00 0.00 1.75
3495 9135 5.193728 TGAAGGTAAAGGGCCTGATAGAAAT 59.806 40.000 6.92 0.00 36.30 2.17
3528 9168 9.193133 GAGGAGCAAATAAAAAGGTTAAAACTC 57.807 33.333 0.00 0.00 0.00 3.01
3650 9291 8.699749 CATATATGCTGATTGTTTGAGCAAATG 58.300 33.333 0.00 0.00 45.46 2.32
3673 9314 2.810439 GATCAGCTGATCTAGGCGTT 57.190 50.000 38.16 14.26 45.60 4.84
3772 9415 8.992835 ATAGGAGTTTTTCATTTTCTGCATTC 57.007 30.769 0.00 0.00 0.00 2.67
3851 9494 1.808133 GCCGCTTCATTCTCCTGGTAG 60.808 57.143 0.00 0.00 0.00 3.18
3852 9495 1.757118 CCGCTTCATTCTCCTGGTAGA 59.243 52.381 0.00 0.00 0.00 2.59
3853 9496 2.366916 CCGCTTCATTCTCCTGGTAGAT 59.633 50.000 0.00 0.00 0.00 1.98
3972 9616 4.272504 CGAGGAGCTTGTGAAAGTAAACAA 59.727 41.667 0.00 0.00 35.14 2.83
4041 9685 2.685100 GGTGAGGACCACTTTTAGTCG 58.315 52.381 0.00 0.00 45.03 4.18
4046 9690 5.930569 GTGAGGACCACTTTTAGTCGTTATT 59.069 40.000 0.00 0.00 42.44 1.40
4051 9705 8.943002 AGGACCACTTTTAGTCGTTATTATTTG 58.057 33.333 0.00 0.00 33.66 2.32
4193 9867 2.617774 GCAGATGCTCTTCAAGGGATTC 59.382 50.000 0.00 0.00 38.21 2.52
4223 9897 5.532779 GGAATGTGATACCTTGAAATCCCTC 59.467 44.000 0.00 0.00 0.00 4.30
4250 9924 1.218316 CGCCTTGAGTACAGGGTCC 59.782 63.158 0.00 0.00 43.85 4.46
4256 9930 3.436243 CTTGAGTACAGGGTCCTCTTCT 58.564 50.000 0.00 0.00 0.00 2.85
4267 9941 4.601857 AGGGTCCTCTTCTAAATGGTCAAA 59.398 41.667 0.00 0.00 0.00 2.69
4268 9942 5.254032 AGGGTCCTCTTCTAAATGGTCAAAT 59.746 40.000 0.00 0.00 0.00 2.32
4329 10003 1.177256 AGCTCAAACCTGGCTTGCTG 61.177 55.000 4.94 2.37 31.81 4.41
4443 10131 2.582052 TGGTTTTGTTACTGGCCTGAG 58.418 47.619 17.64 1.94 0.00 3.35
4538 10247 2.954318 AGGGCATGTGCATATTTCAGTC 59.046 45.455 7.36 0.00 44.36 3.51
4541 10254 3.379372 GGCATGTGCATATTTCAGTCTGT 59.621 43.478 7.36 0.00 44.36 3.41
4613 10330 0.940519 TTTGACAGAACGTACCGCCG 60.941 55.000 0.00 0.00 0.00 6.46
4638 10355 4.410400 CGGGGGCCTCACCAAGTC 62.410 72.222 4.16 0.00 42.05 3.01
4639 10356 3.256960 GGGGGCCTCACCAAGTCA 61.257 66.667 4.16 0.00 42.05 3.41
4640 10357 2.616458 GGGGGCCTCACCAAGTCAT 61.616 63.158 4.16 0.00 42.05 3.06
4641 10358 1.077429 GGGGCCTCACCAAGTCATC 60.077 63.158 0.84 0.00 42.05 2.92
4642 10359 1.685224 GGGCCTCACCAAGTCATCA 59.315 57.895 0.84 0.00 42.05 3.07
4643 10360 0.038166 GGGCCTCACCAAGTCATCAA 59.962 55.000 0.84 0.00 42.05 2.57
4692 10409 8.594550 AGTTACATAACAGTAGAGGACACAAAT 58.405 33.333 4.67 0.00 38.62 2.32
4750 10467 6.212235 GTCAGAGAGACATATGTACATGTGG 58.788 44.000 29.18 16.42 46.77 4.17
4771 10488 4.161942 TGGCCATTCAAAATTGTATCAGGG 59.838 41.667 0.00 0.00 0.00 4.45
4772 10489 4.405358 GGCCATTCAAAATTGTATCAGGGA 59.595 41.667 0.00 0.00 0.00 4.20
4836 10586 8.789825 TTAGGTTCTTTGTTAGTTTGTACACA 57.210 30.769 0.00 0.00 0.00 3.72
4837 10587 7.080353 AGGTTCTTTGTTAGTTTGTACACAC 57.920 36.000 3.89 3.89 0.00 3.82
4838 10588 6.882678 AGGTTCTTTGTTAGTTTGTACACACT 59.117 34.615 18.15 18.15 0.00 3.55
4865 10615 2.135933 GCAAGACCTACACTGTGTCAC 58.864 52.381 17.99 7.48 0.00 3.67
4918 10668 1.398692 TTGTTCCCTTGTTCACCTGC 58.601 50.000 0.00 0.00 0.00 4.85
4946 10696 4.872293 CCTCCCCAAGGCAATTGT 57.128 55.556 7.40 0.00 38.67 2.71
4975 10728 0.392193 CAGCTCTTGATCGTGGCCTT 60.392 55.000 3.32 0.00 0.00 4.35
5008 10761 2.733593 GTCGCTGGGTGTGTCGTC 60.734 66.667 0.00 0.00 0.00 4.20
5048 10801 4.439153 GGCATCTGCGATGAAGAAAAATCA 60.439 41.667 18.54 0.00 43.26 2.57
5053 10831 5.001237 TGCGATGAAGAAAAATCATGCAT 57.999 34.783 0.00 0.00 37.64 3.96
5192 10970 0.676466 TGGTGTGGGCGACATGAATC 60.676 55.000 5.42 0.00 36.78 2.52
5200 10978 2.208431 GGCGACATGAATCTCCTGAAG 58.792 52.381 0.00 0.00 0.00 3.02
5211 10989 0.689623 CTCCTGAAGGACCTGTGCTT 59.310 55.000 3.55 3.55 44.06 3.91
5213 10991 0.607489 CCTGAAGGACCTGTGCTTGG 60.607 60.000 8.86 1.52 41.41 3.61
5220 10998 1.835927 GACCTGTGCTTGGCTCTCCT 61.836 60.000 0.00 0.00 0.00 3.69
5224 11002 1.130054 TGTGCTTGGCTCTCCTTCCT 61.130 55.000 0.00 0.00 0.00 3.36
5233 11011 1.484038 CTCTCCTTCCTCCACTCAGG 58.516 60.000 0.00 0.00 39.47 3.86
5234 11012 0.041833 TCTCCTTCCTCCACTCAGGG 59.958 60.000 0.00 0.00 38.24 4.45
5235 11013 0.252467 CTCCTTCCTCCACTCAGGGT 60.252 60.000 0.00 0.00 38.24 4.34
5236 11014 0.252284 TCCTTCCTCCACTCAGGGTC 60.252 60.000 0.00 0.00 38.24 4.46
5237 11015 0.545309 CCTTCCTCCACTCAGGGTCA 60.545 60.000 0.00 0.00 38.24 4.02
5238 11016 0.901124 CTTCCTCCACTCAGGGTCAG 59.099 60.000 0.00 0.00 38.24 3.51
5239 11017 1.194781 TTCCTCCACTCAGGGTCAGC 61.195 60.000 0.00 0.00 38.24 4.26
5255 11033 1.005630 AGCGACCTCTTGAGTGTGC 60.006 57.895 0.00 0.00 0.00 4.57
5298 11082 0.954452 GTCACTCTTTTGGCACCCAG 59.046 55.000 0.00 0.00 33.81 4.45
5328 11112 1.227497 GCTCCTCCTGCATCTTCCG 60.227 63.158 0.00 0.00 0.00 4.30
5379 11163 4.379221 GAACGTCCCGATCGACAG 57.621 61.111 18.66 7.46 32.74 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.595386 CGGTGGTTGATAAAAAGCAGC 58.405 47.619 7.94 7.94 46.95 5.25
11 12 2.817258 TCCGGTGGTTGATAAAAAGCAG 59.183 45.455 0.00 0.00 38.16 4.24
16 17 4.827835 TGAACATTCCGGTGGTTGATAAAA 59.172 37.500 0.00 0.00 0.00 1.52
17 18 4.216687 GTGAACATTCCGGTGGTTGATAAA 59.783 41.667 0.00 0.00 0.00 1.40
39 40 4.345257 AGTGCGAATGATAACCATCCTAGT 59.655 41.667 0.00 0.00 33.53 2.57
85 86 3.373220 GGAGGACAAGGACATAGAGAGGA 60.373 52.174 0.00 0.00 0.00 3.71
86 87 2.962421 GGAGGACAAGGACATAGAGAGG 59.038 54.545 0.00 0.00 0.00 3.69
87 88 3.888930 GAGGAGGACAAGGACATAGAGAG 59.111 52.174 0.00 0.00 0.00 3.20
88 89 3.529734 AGAGGAGGACAAGGACATAGAGA 59.470 47.826 0.00 0.00 0.00 3.10
89 90 3.909732 AGAGGAGGACAAGGACATAGAG 58.090 50.000 0.00 0.00 0.00 2.43
153 166 8.325787 TCTCCAACTATGCCTTAGATTACAAAA 58.674 33.333 0.00 0.00 0.00 2.44
154 167 7.857456 TCTCCAACTATGCCTTAGATTACAAA 58.143 34.615 0.00 0.00 0.00 2.83
155 168 7.432148 TCTCCAACTATGCCTTAGATTACAA 57.568 36.000 0.00 0.00 0.00 2.41
193 206 0.258774 CATCCCCGAAATTCCTGGGT 59.741 55.000 13.08 0.00 41.63 4.51
219 232 1.211709 CCCAAAAAGTTAGCGGCCG 59.788 57.895 24.05 24.05 0.00 6.13
222 235 1.476488 CATCCCCCAAAAAGTTAGCGG 59.524 52.381 0.00 0.00 0.00 5.52
234 247 1.494721 GCAACTCTAATCCATCCCCCA 59.505 52.381 0.00 0.00 0.00 4.96
239 252 4.068599 GCTTAGGGCAACTCTAATCCATC 58.931 47.826 0.00 0.00 41.35 3.51
240 253 4.092116 GCTTAGGGCAACTCTAATCCAT 57.908 45.455 0.00 0.00 41.35 3.41
241 254 3.560636 GCTTAGGGCAACTCTAATCCA 57.439 47.619 0.00 0.00 41.35 3.41
274 3740 9.798994 CTTTCTTCATTAAGCTATTTTCTGCAT 57.201 29.630 0.00 0.00 32.36 3.96
293 3760 1.956802 CCCGCAACACCCTTTCTTC 59.043 57.895 0.00 0.00 0.00 2.87
295 3762 2.597510 GCCCGCAACACCCTTTCT 60.598 61.111 0.00 0.00 0.00 2.52
297 3764 2.597510 GAGCCCGCAACACCCTTT 60.598 61.111 0.00 0.00 0.00 3.11
298 3765 3.884774 TGAGCCCGCAACACCCTT 61.885 61.111 0.00 0.00 0.00 3.95
322 3789 4.778143 GCCCATCGACGCCAACCT 62.778 66.667 0.00 0.00 0.00 3.50
382 3849 4.971125 GGCTACTCCGCCCGATGC 62.971 72.222 0.00 0.00 44.41 3.91
396 3863 2.659610 GCGACTGAAGGTCTGGCT 59.340 61.111 0.00 0.00 42.44 4.75
399 3866 2.125912 CCGGCGACTGAAGGTCTG 60.126 66.667 9.30 0.00 42.44 3.51
402 3869 3.692406 GACCCGGCGACTGAAGGT 61.692 66.667 9.30 5.54 0.00 3.50
405 3872 3.744719 CTCGACCCGGCGACTGAA 61.745 66.667 9.30 0.00 36.17 3.02
438 3908 1.675641 CCTTGGGTTTCCTCTGCGG 60.676 63.158 0.00 0.00 0.00 5.69
470 3940 0.887247 TGAAAATCATGCCACCACGG 59.113 50.000 0.00 0.00 38.11 4.94
472 3942 4.996122 TGAAATTGAAAATCATGCCACCAC 59.004 37.500 0.00 0.00 0.00 4.16
473 3943 5.221682 ACTGAAATTGAAAATCATGCCACCA 60.222 36.000 0.00 0.00 0.00 4.17
475 3945 6.790285 AACTGAAATTGAAAATCATGCCAC 57.210 33.333 0.00 0.00 0.00 5.01
476 3946 6.990939 TGAAACTGAAATTGAAAATCATGCCA 59.009 30.769 0.00 0.00 0.00 4.92
477 3947 7.385752 TCTGAAACTGAAATTGAAAATCATGCC 59.614 33.333 0.00 0.00 0.00 4.40
478 3948 8.301730 TCTGAAACTGAAATTGAAAATCATGC 57.698 30.769 0.00 0.00 0.00 4.06
488 3958 9.429600 GCTGAAATTTTTCTGAAACTGAAATTG 57.570 29.630 12.42 0.00 38.07 2.32
489 3959 9.165035 TGCTGAAATTTTTCTGAAACTGAAATT 57.835 25.926 12.42 3.83 38.07 1.82
490 3960 8.721019 TGCTGAAATTTTTCTGAAACTGAAAT 57.279 26.923 12.42 0.00 38.07 2.17
491 3961 8.721019 ATGCTGAAATTTTTCTGAAACTGAAA 57.279 26.923 12.42 0.00 38.07 2.69
492 3962 7.980662 TGATGCTGAAATTTTTCTGAAACTGAA 59.019 29.630 12.42 0.00 38.07 3.02
493 3963 7.490840 TGATGCTGAAATTTTTCTGAAACTGA 58.509 30.769 12.42 0.00 38.07 3.41
494 3964 7.703298 TGATGCTGAAATTTTTCTGAAACTG 57.297 32.000 12.42 0.00 38.07 3.16
495 3965 7.225341 GGTTGATGCTGAAATTTTTCTGAAACT 59.775 33.333 12.42 0.00 38.07 2.66
496 3966 7.011295 TGGTTGATGCTGAAATTTTTCTGAAAC 59.989 33.333 12.42 9.92 38.07 2.78
497 3967 7.046652 TGGTTGATGCTGAAATTTTTCTGAAA 58.953 30.769 12.42 0.00 38.07 2.69
498 3968 6.580788 TGGTTGATGCTGAAATTTTTCTGAA 58.419 32.000 12.42 4.08 38.07 3.02
499 3969 6.159299 TGGTTGATGCTGAAATTTTTCTGA 57.841 33.333 12.42 1.29 38.07 3.27
500 3970 6.847956 TTGGTTGATGCTGAAATTTTTCTG 57.152 33.333 4.80 5.32 38.02 3.02
501 3971 7.862512 TTTTGGTTGATGCTGAAATTTTTCT 57.137 28.000 4.80 0.00 38.02 2.52
502 3972 8.344098 TGATTTTGGTTGATGCTGAAATTTTTC 58.656 29.630 0.00 0.00 37.69 2.29
503 3973 8.130469 GTGATTTTGGTTGATGCTGAAATTTTT 58.870 29.630 0.00 0.00 0.00 1.94
504 3974 7.255208 GGTGATTTTGGTTGATGCTGAAATTTT 60.255 33.333 0.00 0.00 0.00 1.82
505 3975 6.205270 GGTGATTTTGGTTGATGCTGAAATTT 59.795 34.615 0.00 0.00 0.00 1.82
506 3976 5.702209 GGTGATTTTGGTTGATGCTGAAATT 59.298 36.000 0.00 0.00 0.00 1.82
507 3977 5.240121 GGTGATTTTGGTTGATGCTGAAAT 58.760 37.500 0.00 0.00 0.00 2.17
508 3978 4.630111 GGTGATTTTGGTTGATGCTGAAA 58.370 39.130 0.00 0.00 0.00 2.69
509 3979 3.305267 CGGTGATTTTGGTTGATGCTGAA 60.305 43.478 0.00 0.00 0.00 3.02
510 3980 2.228582 CGGTGATTTTGGTTGATGCTGA 59.771 45.455 0.00 0.00 0.00 4.26
511 3981 2.228582 TCGGTGATTTTGGTTGATGCTG 59.771 45.455 0.00 0.00 0.00 4.41
512 3982 2.513753 TCGGTGATTTTGGTTGATGCT 58.486 42.857 0.00 0.00 0.00 3.79
513 3983 3.296322 TTCGGTGATTTTGGTTGATGC 57.704 42.857 0.00 0.00 0.00 3.91
514 3984 5.925397 TGAATTTCGGTGATTTTGGTTGATG 59.075 36.000 0.00 0.00 0.00 3.07
515 3985 6.095432 TGAATTTCGGTGATTTTGGTTGAT 57.905 33.333 0.00 0.00 0.00 2.57
516 3986 5.068460 ACTGAATTTCGGTGATTTTGGTTGA 59.932 36.000 10.08 0.00 34.08 3.18
517 3987 5.288804 ACTGAATTTCGGTGATTTTGGTTG 58.711 37.500 10.08 0.00 34.08 3.77
518 3988 5.529581 ACTGAATTTCGGTGATTTTGGTT 57.470 34.783 10.08 0.00 34.08 3.67
530 4000 6.437928 TGGAAACTGAAATCACTGAATTTCG 58.562 36.000 12.24 10.31 44.85 3.46
531 4001 8.822652 AATGGAAACTGAAATCACTGAATTTC 57.177 30.769 10.96 10.96 43.10 2.17
532 4002 9.264719 GAAATGGAAACTGAAATCACTGAATTT 57.735 29.630 0.00 0.00 0.00 1.82
533 4003 8.423349 TGAAATGGAAACTGAAATCACTGAATT 58.577 29.630 0.00 0.00 0.00 2.17
534 4004 7.954835 TGAAATGGAAACTGAAATCACTGAAT 58.045 30.769 0.00 0.00 0.00 2.57
535 4005 7.345422 TGAAATGGAAACTGAAATCACTGAA 57.655 32.000 0.00 0.00 0.00 3.02
536 4006 6.515531 GCTGAAATGGAAACTGAAATCACTGA 60.516 38.462 0.00 0.00 0.00 3.41
537 4007 5.632347 GCTGAAATGGAAACTGAAATCACTG 59.368 40.000 0.00 0.00 0.00 3.66
538 4008 5.563475 CGCTGAAATGGAAACTGAAATCACT 60.563 40.000 0.00 0.00 0.00 3.41
539 4009 4.618489 CGCTGAAATGGAAACTGAAATCAC 59.382 41.667 0.00 0.00 0.00 3.06
540 4010 4.278170 ACGCTGAAATGGAAACTGAAATCA 59.722 37.500 0.00 0.00 0.00 2.57
541 4011 4.798574 ACGCTGAAATGGAAACTGAAATC 58.201 39.130 0.00 0.00 0.00 2.17
542 4012 4.853924 ACGCTGAAATGGAAACTGAAAT 57.146 36.364 0.00 0.00 0.00 2.17
543 4013 5.759506 TTACGCTGAAATGGAAACTGAAA 57.240 34.783 0.00 0.00 0.00 2.69
544 4014 5.471797 TCATTACGCTGAAATGGAAACTGAA 59.528 36.000 0.00 0.00 35.48 3.02
545 4015 5.000591 TCATTACGCTGAAATGGAAACTGA 58.999 37.500 0.00 0.00 35.48 3.41
546 4016 5.088739 GTCATTACGCTGAAATGGAAACTG 58.911 41.667 0.00 0.00 35.48 3.16
547 4017 5.003804 AGTCATTACGCTGAAATGGAAACT 58.996 37.500 0.00 0.00 35.48 2.66
548 4018 5.088739 CAGTCATTACGCTGAAATGGAAAC 58.911 41.667 0.00 0.00 35.48 2.78
549 4019 5.000591 TCAGTCATTACGCTGAAATGGAAA 58.999 37.500 0.00 0.00 38.61 3.13
550 4020 4.574892 TCAGTCATTACGCTGAAATGGAA 58.425 39.130 0.00 0.00 38.61 3.53
551 4021 4.200838 TCAGTCATTACGCTGAAATGGA 57.799 40.909 0.00 0.00 38.61 3.41
552 4022 4.944962 TTCAGTCATTACGCTGAAATGG 57.055 40.909 4.73 0.00 45.33 3.16
556 4026 7.549134 AGTGAATATTTCAGTCATTACGCTGAA 59.451 33.333 3.24 3.24 46.23 3.02
557 4027 7.041721 AGTGAATATTTCAGTCATTACGCTGA 58.958 34.615 0.00 0.00 39.00 4.26
558 4028 7.239166 AGTGAATATTTCAGTCATTACGCTG 57.761 36.000 0.00 0.00 39.00 5.18
559 4029 7.549134 TCAAGTGAATATTTCAGTCATTACGCT 59.451 33.333 0.00 0.00 42.30 5.07
560 4030 7.684670 TCAAGTGAATATTTCAGTCATTACGC 58.315 34.615 0.00 0.00 42.30 4.42
627 4097 6.428465 TCAGTATAGCACGACAATTCCAAAAA 59.572 34.615 0.00 0.00 0.00 1.94
628 4098 5.935206 TCAGTATAGCACGACAATTCCAAAA 59.065 36.000 0.00 0.00 0.00 2.44
629 4099 5.483811 TCAGTATAGCACGACAATTCCAAA 58.516 37.500 0.00 0.00 0.00 3.28
630 4100 5.079689 TCAGTATAGCACGACAATTCCAA 57.920 39.130 0.00 0.00 0.00 3.53
631 4101 4.729227 TCAGTATAGCACGACAATTCCA 57.271 40.909 0.00 0.00 0.00 3.53
632 4102 6.604735 ATTTCAGTATAGCACGACAATTCC 57.395 37.500 0.00 0.00 0.00 3.01
633 4103 7.464358 ACAATTTCAGTATAGCACGACAATTC 58.536 34.615 0.00 0.00 0.00 2.17
634 4104 7.377766 ACAATTTCAGTATAGCACGACAATT 57.622 32.000 0.00 0.00 0.00 2.32
635 4105 6.985188 ACAATTTCAGTATAGCACGACAAT 57.015 33.333 0.00 0.00 0.00 2.71
636 4106 6.425417 TCAACAATTTCAGTATAGCACGACAA 59.575 34.615 0.00 0.00 0.00 3.18
637 4107 5.929415 TCAACAATTTCAGTATAGCACGACA 59.071 36.000 0.00 0.00 0.00 4.35
638 4108 6.403333 TCAACAATTTCAGTATAGCACGAC 57.597 37.500 0.00 0.00 0.00 4.34
639 4109 7.428282 TTTCAACAATTTCAGTATAGCACGA 57.572 32.000 0.00 0.00 0.00 4.35
640 4110 9.935682 ATATTTCAACAATTTCAGTATAGCACG 57.064 29.630 0.00 0.00 0.00 5.34
647 4117 9.213799 GGCCAAAATATTTCAACAATTTCAGTA 57.786 29.630 0.00 0.00 0.00 2.74
648 4118 7.095271 CGGCCAAAATATTTCAACAATTTCAGT 60.095 33.333 2.24 0.00 0.00 3.41
649 4119 7.117523 TCGGCCAAAATATTTCAACAATTTCAG 59.882 33.333 2.24 0.00 0.00 3.02
650 4120 6.931281 TCGGCCAAAATATTTCAACAATTTCA 59.069 30.769 2.24 0.00 0.00 2.69
651 4121 7.357951 TCGGCCAAAATATTTCAACAATTTC 57.642 32.000 2.24 0.00 0.00 2.17
652 4122 7.736447 TTCGGCCAAAATATTTCAACAATTT 57.264 28.000 2.24 0.00 0.00 1.82
653 4123 7.570324 CGTTTCGGCCAAAATATTTCAACAATT 60.570 33.333 2.24 0.00 0.00 2.32
654 4124 6.128688 CGTTTCGGCCAAAATATTTCAACAAT 60.129 34.615 2.24 0.00 0.00 2.71
655 4125 5.175856 CGTTTCGGCCAAAATATTTCAACAA 59.824 36.000 2.24 0.00 0.00 2.83
656 4126 4.681942 CGTTTCGGCCAAAATATTTCAACA 59.318 37.500 2.24 0.00 0.00 3.33
657 4127 4.682401 ACGTTTCGGCCAAAATATTTCAAC 59.318 37.500 2.24 0.00 0.00 3.18
658 4128 4.872664 ACGTTTCGGCCAAAATATTTCAA 58.127 34.783 2.24 0.00 0.00 2.69
659 4129 4.506886 ACGTTTCGGCCAAAATATTTCA 57.493 36.364 2.24 0.00 0.00 2.69
660 4130 8.791355 ATATTACGTTTCGGCCAAAATATTTC 57.209 30.769 2.24 0.00 0.00 2.17
661 4131 9.589111 AAATATTACGTTTCGGCCAAAATATTT 57.411 25.926 2.24 11.26 35.11 1.40
662 4132 9.240159 GAAATATTACGTTTCGGCCAAAATATT 57.760 29.630 2.24 6.54 32.32 1.28
663 4133 8.407064 TGAAATATTACGTTTCGGCCAAAATAT 58.593 29.630 2.24 1.02 38.18 1.28
664 4134 7.759465 TGAAATATTACGTTTCGGCCAAAATA 58.241 30.769 2.24 0.00 38.18 1.40
665 4135 6.622549 TGAAATATTACGTTTCGGCCAAAAT 58.377 32.000 2.24 0.00 38.18 1.82
666 4136 6.010294 TGAAATATTACGTTTCGGCCAAAA 57.990 33.333 2.24 0.00 38.18 2.44
667 4137 5.181622 ACTGAAATATTACGTTTCGGCCAAA 59.818 36.000 2.24 0.00 42.81 3.28
668 4138 4.696402 ACTGAAATATTACGTTTCGGCCAA 59.304 37.500 2.24 0.00 42.81 4.52
669 4139 4.093703 CACTGAAATATTACGTTTCGGCCA 59.906 41.667 2.24 0.00 42.81 5.36
670 4140 4.093850 ACACTGAAATATTACGTTTCGGCC 59.906 41.667 0.00 0.00 42.81 6.13
671 4141 5.063060 AGACACTGAAATATTACGTTTCGGC 59.937 40.000 0.00 0.00 42.81 5.54
672 4142 6.466812 CAGACACTGAAATATTACGTTTCGG 58.533 40.000 0.00 0.00 43.98 4.30
673 4143 5.952064 GCAGACACTGAAATATTACGTTTCG 59.048 40.000 0.00 0.00 38.18 3.46
674 4144 6.248631 GGCAGACACTGAAATATTACGTTTC 58.751 40.000 0.00 0.00 36.39 2.78
675 4145 5.163893 CGGCAGACACTGAAATATTACGTTT 60.164 40.000 0.00 0.00 32.44 3.60
676 4146 4.328983 CGGCAGACACTGAAATATTACGTT 59.671 41.667 0.00 0.00 32.44 3.99
677 4147 3.863424 CGGCAGACACTGAAATATTACGT 59.137 43.478 2.81 0.00 32.44 3.57
678 4148 4.109766 TCGGCAGACACTGAAATATTACG 58.890 43.478 2.81 0.00 32.44 3.18
679 4149 6.417191 TTTCGGCAGACACTGAAATATTAC 57.583 37.500 2.81 0.00 39.43 1.89
685 4155 5.471797 TCAATAATTTCGGCAGACACTGAAA 59.528 36.000 2.81 1.36 46.15 2.69
686 4156 5.000591 TCAATAATTTCGGCAGACACTGAA 58.999 37.500 2.81 0.00 32.44 3.02
687 4157 4.574892 TCAATAATTTCGGCAGACACTGA 58.425 39.130 2.81 0.00 32.44 3.41
688 4158 4.944962 TCAATAATTTCGGCAGACACTG 57.055 40.909 0.00 0.00 34.12 3.66
689 4159 5.957842 TTTCAATAATTTCGGCAGACACT 57.042 34.783 0.00 0.00 0.00 3.55
690 4160 8.682128 TTAATTTCAATAATTTCGGCAGACAC 57.318 30.769 0.00 0.00 0.00 3.67
691 4161 8.519526 ACTTAATTTCAATAATTTCGGCAGACA 58.480 29.630 0.00 0.00 0.00 3.41
692 4162 8.798153 CACTTAATTTCAATAATTTCGGCAGAC 58.202 33.333 0.00 0.00 0.00 3.51
693 4163 8.735315 TCACTTAATTTCAATAATTTCGGCAGA 58.265 29.630 0.00 0.00 0.00 4.26
694 4164 8.909708 TCACTTAATTTCAATAATTTCGGCAG 57.090 30.769 0.00 0.00 0.00 4.85
695 4165 9.868277 ATTCACTTAATTTCAATAATTTCGGCA 57.132 25.926 0.00 0.00 0.00 5.69
724 4194 7.912949 TTTCACTTTCAATGAGATTTCGTTG 57.087 32.000 11.12 11.12 46.91 4.10
725 4195 7.435192 GGTTTTCACTTTCAATGAGATTTCGTT 59.565 33.333 0.00 0.00 32.76 3.85
726 4196 6.918022 GGTTTTCACTTTCAATGAGATTTCGT 59.082 34.615 0.00 0.00 0.00 3.85
727 4197 6.917477 TGGTTTTCACTTTCAATGAGATTTCG 59.083 34.615 0.00 0.00 0.00 3.46
728 4198 8.706035 CATGGTTTTCACTTTCAATGAGATTTC 58.294 33.333 0.00 0.00 0.00 2.17
729 4199 7.172019 GCATGGTTTTCACTTTCAATGAGATTT 59.828 33.333 0.00 0.00 0.00 2.17
730 4200 6.647895 GCATGGTTTTCACTTTCAATGAGATT 59.352 34.615 0.00 0.00 0.00 2.40
731 4201 6.161381 GCATGGTTTTCACTTTCAATGAGAT 58.839 36.000 0.00 0.00 0.00 2.75
732 4202 5.531634 GCATGGTTTTCACTTTCAATGAGA 58.468 37.500 0.00 0.00 0.00 3.27
733 4203 4.383649 CGCATGGTTTTCACTTTCAATGAG 59.616 41.667 0.00 0.00 0.00 2.90
734 4204 4.202101 ACGCATGGTTTTCACTTTCAATGA 60.202 37.500 0.00 0.00 0.00 2.57
735 4205 4.050553 ACGCATGGTTTTCACTTTCAATG 58.949 39.130 0.00 0.00 0.00 2.82
736 4206 4.050553 CACGCATGGTTTTCACTTTCAAT 58.949 39.130 0.00 0.00 0.00 2.57
737 4207 3.129462 TCACGCATGGTTTTCACTTTCAA 59.871 39.130 0.00 0.00 0.00 2.69
738 4208 2.685388 TCACGCATGGTTTTCACTTTCA 59.315 40.909 0.00 0.00 0.00 2.69
739 4209 3.347958 TCACGCATGGTTTTCACTTTC 57.652 42.857 0.00 0.00 0.00 2.62
740 4210 3.552684 CCATCACGCATGGTTTTCACTTT 60.553 43.478 5.91 0.00 46.72 2.66
741 4211 2.030007 CCATCACGCATGGTTTTCACTT 60.030 45.455 5.91 0.00 46.72 3.16
742 4212 1.541147 CCATCACGCATGGTTTTCACT 59.459 47.619 5.91 0.00 46.72 3.41
743 4213 1.981254 CCATCACGCATGGTTTTCAC 58.019 50.000 5.91 0.00 46.72 3.18
751 4221 2.282407 TGAGACATTCCATCACGCATG 58.718 47.619 0.00 0.00 0.00 4.06
752 4222 2.558378 CTGAGACATTCCATCACGCAT 58.442 47.619 0.00 0.00 0.00 4.73
753 4223 1.405933 CCTGAGACATTCCATCACGCA 60.406 52.381 0.00 0.00 0.00 5.24
754 4224 1.134699 TCCTGAGACATTCCATCACGC 60.135 52.381 0.00 0.00 0.00 5.34
759 4229 2.359900 GCGTTTCCTGAGACATTCCAT 58.640 47.619 0.00 0.00 0.00 3.41
786 4256 4.270008 GTCCAGTTGCAATAACTACCCAT 58.730 43.478 0.59 0.00 0.00 4.00
816 4286 2.347490 CCCCACTTGTCAGGGTCG 59.653 66.667 0.00 0.00 43.89 4.79
827 4297 3.177884 TGAACTGCTGGCCCCACT 61.178 61.111 0.00 0.00 0.00 4.00
950 4442 4.798682 GAGGGAGGAAGGGGCGGA 62.799 72.222 0.00 0.00 0.00 5.54
962 4454 2.133201 AGAGGAGGGAGGGAGGGA 59.867 66.667 0.00 0.00 0.00 4.20
982 4474 2.513159 TCGCTGTCGAACTTTTCCG 58.487 52.632 0.00 0.00 42.44 4.30
1127 4629 1.444553 CCAGAACAGACGCGAGGTC 60.445 63.158 15.93 10.72 46.45 3.85
1195 4902 7.542477 TCAAGAAGAAGAATAACGAACAGCTAG 59.458 37.037 0.00 0.00 0.00 3.42
1220 4927 2.825836 CTTCCATGCCGGCCTGTC 60.826 66.667 27.01 0.00 33.14 3.51
1266 4973 6.473455 AGCAAAACGAAATTGTGAAGAAGAAG 59.527 34.615 0.00 0.00 0.00 2.85
1272 4979 5.288232 TCAACAGCAAAACGAAATTGTGAAG 59.712 36.000 0.00 0.00 0.00 3.02
1273 4980 5.164233 TCAACAGCAAAACGAAATTGTGAA 58.836 33.333 0.00 0.00 0.00 3.18
1274 4981 4.738124 TCAACAGCAAAACGAAATTGTGA 58.262 34.783 0.00 0.00 0.00 3.58
1347 5960 6.315642 TGTGTCACGTTCCTTAACAATTAACA 59.684 34.615 0.00 0.00 35.16 2.41
1348 5961 6.717413 TGTGTCACGTTCCTTAACAATTAAC 58.283 36.000 0.00 0.00 35.16 2.01
1350 5963 5.467399 CCTGTGTCACGTTCCTTAACAATTA 59.533 40.000 0.00 0.00 35.16 1.40
1351 5964 4.274950 CCTGTGTCACGTTCCTTAACAATT 59.725 41.667 0.00 0.00 35.16 2.32
1352 5965 3.813166 CCTGTGTCACGTTCCTTAACAAT 59.187 43.478 0.00 0.00 35.16 2.71
1353 5966 3.199677 CCTGTGTCACGTTCCTTAACAA 58.800 45.455 0.00 0.00 35.16 2.83
1367 5990 2.288825 TGATGAAACTCCGACCTGTGTC 60.289 50.000 0.00 0.00 38.18 3.67
1369 5992 2.341257 CTGATGAAACTCCGACCTGTG 58.659 52.381 0.00 0.00 0.00 3.66
1375 5998 3.244215 ACTGAAAGCTGATGAAACTCCGA 60.244 43.478 0.00 0.00 37.60 4.55
1406 6029 5.814705 CAGAATACAAGGTCAGATCTCAACC 59.185 44.000 13.77 13.77 0.00 3.77
1427 6050 5.449553 TCCTGCTCATAGACATAGAACAGA 58.550 41.667 0.00 0.00 29.34 3.41
1548 6176 8.677300 GGAGATAAATCATGAAGTTAGTTGCAA 58.323 33.333 0.00 0.00 0.00 4.08
1550 6178 8.213518 TGGAGATAAATCATGAAGTTAGTTGC 57.786 34.615 0.00 1.08 0.00 4.17
1563 6191 6.417258 TGCACTGATTTCTGGAGATAAATCA 58.583 36.000 9.41 9.41 45.26 2.57
1565 6193 6.421485 ACTGCACTGATTTCTGGAGATAAAT 58.579 36.000 0.00 0.00 30.79 1.40
1573 6203 4.334759 CCTGATAACTGCACTGATTTCTGG 59.665 45.833 0.00 0.00 0.00 3.86
1655 6285 2.298163 AGCAAAGGAACCAAATCAGCAG 59.702 45.455 0.00 0.00 0.00 4.24
1669 6299 3.181496 GGCGAGGAATCTTAAAGCAAAGG 60.181 47.826 0.00 0.00 0.00 3.11
1672 6302 2.026262 AGGGCGAGGAATCTTAAAGCAA 60.026 45.455 0.00 0.00 0.00 3.91
1702 6332 6.773200 TGAACATAATGTTTACCTGGACAACA 59.227 34.615 14.76 14.76 41.28 3.33
1703 6333 7.209471 TGAACATAATGTTTACCTGGACAAC 57.791 36.000 0.00 3.20 41.28 3.32
1708 6338 4.949856 AGGCTGAACATAATGTTTACCTGG 59.050 41.667 0.00 0.00 41.28 4.45
1717 6347 6.369340 TGCAAATCAAAAGGCTGAACATAATG 59.631 34.615 0.00 0.00 0.00 1.90
1718 6348 6.369615 GTGCAAATCAAAAGGCTGAACATAAT 59.630 34.615 0.00 0.00 0.00 1.28
1720 6350 5.221402 TGTGCAAATCAAAAGGCTGAACATA 60.221 36.000 0.00 0.00 0.00 2.29
1721 6351 4.060205 GTGCAAATCAAAAGGCTGAACAT 58.940 39.130 0.00 0.00 0.00 2.71
1722 6352 3.118847 TGTGCAAATCAAAAGGCTGAACA 60.119 39.130 0.00 0.00 0.00 3.18
1723 6353 3.456280 TGTGCAAATCAAAAGGCTGAAC 58.544 40.909 0.00 0.00 0.00 3.18
1724 6354 3.815856 TGTGCAAATCAAAAGGCTGAA 57.184 38.095 0.00 0.00 0.00 3.02
1725 6355 3.069872 ACATGTGCAAATCAAAAGGCTGA 59.930 39.130 0.00 0.00 0.00 4.26
1730 6360 3.742369 GGACCACATGTGCAAATCAAAAG 59.258 43.478 20.81 5.16 34.99 2.27
1733 6363 2.296752 CTGGACCACATGTGCAAATCAA 59.703 45.455 20.81 7.33 45.36 2.57
1735 6365 2.161855 TCTGGACCACATGTGCAAATC 58.838 47.619 20.81 13.44 45.36 2.17
1743 6373 5.415389 TGTTCATGTAATTCTGGACCACATG 59.585 40.000 12.23 12.23 44.95 3.21
1751 6381 7.475015 CACACCTATTGTTCATGTAATTCTGG 58.525 38.462 0.00 0.00 35.67 3.86
1771 6401 1.602605 GGTAGTGGTTGGGCACACC 60.603 63.158 0.00 0.00 38.34 4.16
1774 6404 0.179001 AAGTGGTAGTGGTTGGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
1776 6406 1.244816 GAAAGTGGTAGTGGTTGGGC 58.755 55.000 0.00 0.00 0.00 5.36
1777 6407 2.504367 CTGAAAGTGGTAGTGGTTGGG 58.496 52.381 0.00 0.00 0.00 4.12
1778 6408 1.880027 GCTGAAAGTGGTAGTGGTTGG 59.120 52.381 0.00 0.00 35.30 3.77
1779 6409 2.571212 TGCTGAAAGTGGTAGTGGTTG 58.429 47.619 0.00 0.00 35.30 3.77
1782 6412 4.853924 AATTTGCTGAAAGTGGTAGTGG 57.146 40.909 0.00 0.00 35.30 4.00
1823 6455 4.019411 TGGGCAATGAACTCTAGATTGTCA 60.019 41.667 9.24 6.35 34.10 3.58
1824 6456 4.517285 TGGGCAATGAACTCTAGATTGTC 58.483 43.478 0.00 0.00 32.10 3.18
1835 6467 2.676632 TTGCATGATGGGCAATGAAC 57.323 45.000 0.00 0.00 45.57 3.18
1843 6475 7.719483 ACTATTCATTTACTTTGCATGATGGG 58.281 34.615 0.00 0.00 0.00 4.00
1853 6485 9.686683 AGCCAACTATGACTATTCATTTACTTT 57.313 29.630 0.39 0.00 39.66 2.66
1883 6550 9.162764 AGTATTTGTTACTACTTAAGGTGCATG 57.837 33.333 7.53 0.00 39.44 4.06
1884 6551 9.379791 GAGTATTTGTTACTACTTAAGGTGCAT 57.620 33.333 7.53 0.00 41.35 3.96
1889 6556 8.202811 GGAGGGAGTATTTGTTACTACTTAAGG 58.797 40.741 7.53 0.00 41.04 2.69
1898 6572 3.431346 GGGACGGAGGGAGTATTTGTTAC 60.431 52.174 0.00 0.00 0.00 2.50
1899 6573 2.767960 GGGACGGAGGGAGTATTTGTTA 59.232 50.000 0.00 0.00 0.00 2.41
1900 6574 1.558294 GGGACGGAGGGAGTATTTGTT 59.442 52.381 0.00 0.00 0.00 2.83
1901 6575 1.201424 GGGACGGAGGGAGTATTTGT 58.799 55.000 0.00 0.00 0.00 2.83
1902 6576 1.200519 TGGGACGGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
1903 6577 2.191981 ATGGGACGGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
1904 6578 3.339713 TTATGGGACGGAGGGAGTATT 57.660 47.619 0.00 0.00 0.00 1.89
1905 6579 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
1906 6580 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
1907 6581 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
1908 6582 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1909 6583 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1910 6584 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1911 6585 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1912 6586 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1913 6587 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1957 6631 6.148811 CCATCCCATAATATACGACGCTTTTT 59.851 38.462 0.00 0.00 0.00 1.94
1958 6632 5.642063 CCATCCCATAATATACGACGCTTTT 59.358 40.000 0.00 0.00 0.00 2.27
1959 6633 5.046878 TCCATCCCATAATATACGACGCTTT 60.047 40.000 0.00 0.00 0.00 3.51
1960 6634 4.464951 TCCATCCCATAATATACGACGCTT 59.535 41.667 0.00 0.00 0.00 4.68
1961 6635 4.021229 TCCATCCCATAATATACGACGCT 58.979 43.478 0.00 0.00 0.00 5.07
1962 6636 4.360563 CTCCATCCCATAATATACGACGC 58.639 47.826 0.00 0.00 0.00 5.19
1963 6637 4.202121 CCCTCCATCCCATAATATACGACG 60.202 50.000 0.00 0.00 0.00 5.12
1964 6638 4.960469 TCCCTCCATCCCATAATATACGAC 59.040 45.833 0.00 0.00 0.00 4.34
1965 6639 5.208890 CTCCCTCCATCCCATAATATACGA 58.791 45.833 0.00 0.00 0.00 3.43
1966 6640 4.962995 ACTCCCTCCATCCCATAATATACG 59.037 45.833 0.00 0.00 0.00 3.06
1967 6641 7.133483 AGTACTCCCTCCATCCCATAATATAC 58.867 42.308 0.00 0.00 0.00 1.47
1968 6642 7.312162 AGTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
1969 6643 6.185677 AGTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
1970 6644 5.633473 AGTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
1971 6645 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
1972 6646 5.427857 TTAGTACTCCCTCCATCCCATAA 57.572 43.478 0.00 0.00 0.00 1.90
1973 6647 5.427857 TTTAGTACTCCCTCCATCCCATA 57.572 43.478 0.00 0.00 0.00 2.74
1974 6648 4.295905 TTTAGTACTCCCTCCATCCCAT 57.704 45.455 0.00 0.00 0.00 4.00
1975 6649 3.788116 TTTAGTACTCCCTCCATCCCA 57.212 47.619 0.00 0.00 0.00 4.37
1976 6650 5.246429 CACTATTTAGTACTCCCTCCATCCC 59.754 48.000 0.00 0.00 34.13 3.85
1977 6651 6.015265 GTCACTATTTAGTACTCCCTCCATCC 60.015 46.154 0.00 0.00 34.13 3.51
1978 6652 6.778559 AGTCACTATTTAGTACTCCCTCCATC 59.221 42.308 0.00 0.00 34.13 3.51
1979 6653 6.684538 AGTCACTATTTAGTACTCCCTCCAT 58.315 40.000 0.00 0.00 34.13 3.41
1980 6654 6.088541 AGTCACTATTTAGTACTCCCTCCA 57.911 41.667 0.00 0.00 34.13 3.86
1981 6655 6.127793 TGAGTCACTATTTAGTACTCCCTCC 58.872 44.000 0.00 0.00 36.82 4.30
1982 6656 7.653647 CATGAGTCACTATTTAGTACTCCCTC 58.346 42.308 0.00 8.32 36.82 4.30
1983 6657 6.041069 GCATGAGTCACTATTTAGTACTCCCT 59.959 42.308 0.00 0.00 36.82 4.20
1984 6658 6.041069 AGCATGAGTCACTATTTAGTACTCCC 59.959 42.308 0.00 9.96 36.82 4.30
1985 6659 7.045126 AGCATGAGTCACTATTTAGTACTCC 57.955 40.000 0.00 8.10 36.82 3.85
1986 6660 7.799447 CGTAGCATGAGTCACTATTTAGTACTC 59.201 40.741 0.00 14.13 37.40 2.59
1987 6661 7.640852 CGTAGCATGAGTCACTATTTAGTACT 58.359 38.462 0.00 0.00 34.13 2.73
1988 6662 7.839438 CGTAGCATGAGTCACTATTTAGTAC 57.161 40.000 0.00 0.00 34.13 2.73
2011 6736 7.224753 AGAGGTCACTGTAAAATACATATTGCG 59.775 37.037 0.00 0.00 38.15 4.85
2020 6745 9.048446 GTGTAAACAAGAGGTCACTGTAAAATA 57.952 33.333 0.00 0.00 0.00 1.40
2021 6746 7.012989 GGTGTAAACAAGAGGTCACTGTAAAAT 59.987 37.037 0.00 0.00 0.00 1.82
2022 6747 6.316890 GGTGTAAACAAGAGGTCACTGTAAAA 59.683 38.462 0.00 0.00 0.00 1.52
2023 6748 5.818857 GGTGTAAACAAGAGGTCACTGTAAA 59.181 40.000 0.00 0.00 0.00 2.01
2024 6749 5.104859 TGGTGTAAACAAGAGGTCACTGTAA 60.105 40.000 0.00 0.00 0.00 2.41
2036 6761 6.208644 CCAAACTGAGAATGGTGTAAACAAG 58.791 40.000 0.00 0.00 0.00 3.16
2055 6780 1.532868 CTACACTCAGCACTGCCAAAC 59.467 52.381 0.00 0.00 0.00 2.93
2063 6788 9.367444 ACTTTGTAAATATACTACACTCAGCAC 57.633 33.333 0.00 0.00 32.98 4.40
2108 7098 8.367660 AGACTGGAGAATATTCAGTGACTAAA 57.632 34.615 17.56 0.00 41.24 1.85
2114 7104 7.053316 AGATGAGACTGGAGAATATTCAGTG 57.947 40.000 17.56 7.12 41.24 3.66
2117 7107 5.830457 ACGAGATGAGACTGGAGAATATTCA 59.170 40.000 17.56 0.00 0.00 2.57
2124 7114 4.590918 ACTTAACGAGATGAGACTGGAGA 58.409 43.478 0.00 0.00 0.00 3.71
2127 7117 6.787085 AAAAACTTAACGAGATGAGACTGG 57.213 37.500 0.00 0.00 0.00 4.00
2138 7128 9.852091 GACTCTAGGAGATTAAAAACTTAACGA 57.148 33.333 1.31 0.00 33.32 3.85
2155 7145 9.621239 AAATATCAATCAATAGGGACTCTAGGA 57.379 33.333 0.00 0.00 41.75 2.94
2227 7219 6.208644 GTGTCTCATTGTTACTGCAAAATGT 58.791 36.000 0.00 0.00 32.92 2.71
2233 7225 3.070878 TCAGGTGTCTCATTGTTACTGCA 59.929 43.478 0.00 0.00 0.00 4.41
2234 7586 3.664107 TCAGGTGTCTCATTGTTACTGC 58.336 45.455 0.00 0.00 0.00 4.40
2249 7601 4.037803 TGGTCAAATGACACAAATCAGGTG 59.962 41.667 14.93 0.00 46.47 4.00
2326 7678 1.208293 GCACCTCTTAGCCAGCTAACT 59.792 52.381 8.01 0.00 35.06 2.24
2383 7735 4.009675 TGCCATGAGACAATCCAAGTAAC 58.990 43.478 0.00 0.00 0.00 2.50
2386 7738 2.306805 TCTGCCATGAGACAATCCAAGT 59.693 45.455 0.00 0.00 0.00 3.16
2441 7793 2.697751 CAAACAAACATGGTTGGAGGGA 59.302 45.455 26.56 0.00 33.16 4.20
2462 7814 4.082463 GGATATACTGGCAGTCTAGCAGAC 60.082 50.000 25.80 5.43 45.38 3.51
2489 8092 5.605564 TCACTGATTAAAACACATGACCG 57.394 39.130 0.00 0.00 0.00 4.79
2506 8109 6.051717 CCTAGGATACAGGAAAACATCACTG 58.948 44.000 1.05 0.00 41.41 3.66
2525 8128 2.996621 CAAAGTGCTTCTCGAACCTAGG 59.003 50.000 7.41 7.41 0.00 3.02
2557 8160 2.664424 CGTAACACAAAAGGCACCATCG 60.664 50.000 0.00 0.00 0.00 3.84
2608 8211 5.945784 TCAATCTGTTTACTTGATTCCCCAG 59.054 40.000 0.00 0.00 0.00 4.45
2656 8274 2.017783 CTGCGGCATGTGCACAAAC 61.018 57.895 25.72 18.26 44.36 2.93
2657 8275 2.014064 AACTGCGGCATGTGCACAAA 62.014 50.000 25.72 0.20 44.36 2.83
2670 8288 6.604012 TGTGGTTATGTTAATACAAACTGCG 58.396 36.000 0.00 0.00 37.91 5.18
2681 8299 7.946207 TGCTCTGAAAATTGTGGTTATGTTAA 58.054 30.769 0.00 0.00 0.00 2.01
2715 8338 9.650714 TGGAAAAATTCAGGAGAATGATCATAT 57.349 29.630 9.04 0.30 43.52 1.78
2752 8375 2.029020 TCACCTCATGTTTCTCCGTCAG 60.029 50.000 0.00 0.00 0.00 3.51
2784 8407 1.187087 AGTAGCGAGGGAAGAACTGG 58.813 55.000 0.00 0.00 0.00 4.00
2834 8457 7.275888 TGCAGAACAACTATTTCATGTCTTT 57.724 32.000 0.00 0.00 0.00 2.52
2837 8460 5.182001 ACCTGCAGAACAACTATTTCATGTC 59.818 40.000 17.39 0.00 0.00 3.06
2867 8490 3.312421 CCCATAGCACTACAAATGGAACG 59.688 47.826 1.79 0.00 41.20 3.95
2903 8526 5.163248 TGGAGAACAACATACCAACAGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
2928 8552 5.961272 ACCATGAAAAATATTCCGGTTGAC 58.039 37.500 0.00 0.00 0.00 3.18
2990 8622 8.527810 TCCACTTCTTTTTCTTTGTTGTAACAT 58.472 29.630 0.00 0.00 38.95 2.71
3021 8656 5.575019 GCTAGTAAGAGCAGTAGTGTTCTC 58.425 45.833 16.27 7.15 42.98 2.87
3034 8669 5.757320 CCACCATCAATCTTGCTAGTAAGAG 59.243 44.000 24.62 14.38 39.81 2.85
3035 8670 5.425217 TCCACCATCAATCTTGCTAGTAAGA 59.575 40.000 23.16 23.16 40.65 2.10
3071 8706 0.323725 CAAGTGCAGGCCTATTGGGT 60.324 55.000 3.98 0.00 37.43 4.51
3074 8709 1.888512 ACAACAAGTGCAGGCCTATTG 59.111 47.619 3.98 11.17 0.00 1.90
3136 8771 8.984481 GCTGACCAAAAACAGTTCTGCAAGAA 62.984 42.308 0.00 0.00 44.99 2.52
3138 8773 4.107622 CTGACCAAAAACAGTTCTGCAAG 58.892 43.478 0.00 0.00 0.00 4.01
3143 8778 3.378427 GTGAGCTGACCAAAAACAGTTCT 59.622 43.478 0.00 0.00 42.11 3.01
3149 8784 3.988379 TCATGTGAGCTGACCAAAAAC 57.012 42.857 0.00 0.00 0.00 2.43
3153 8790 4.122046 CGATAATCATGTGAGCTGACCAA 58.878 43.478 0.00 0.00 0.00 3.67
3156 8793 4.443725 CACTCGATAATCATGTGAGCTGAC 59.556 45.833 0.00 0.00 0.00 3.51
3174 8811 7.843490 TTTCCTCATTTTAACTATCCACTCG 57.157 36.000 0.00 0.00 0.00 4.18
3193 8832 7.088272 GTGGCAACGATTTATAAGTTTTTCCT 58.912 34.615 0.00 0.00 42.51 3.36
3197 8836 6.386654 CAGGTGGCAACGATTTATAAGTTTT 58.613 36.000 0.00 0.00 42.51 2.43
3234 8873 5.883685 AGTATGCTGAAATCCTCATCTGA 57.116 39.130 0.00 0.00 32.14 3.27
3242 8881 5.105063 GCTTCCAAAAGTATGCTGAAATCC 58.895 41.667 0.00 0.00 34.79 3.01
3258 8897 2.426522 GTACATCAGTGCTGCTTCCAA 58.573 47.619 0.00 0.00 0.00 3.53
3278 8917 0.591488 TAGCAGCAACGCGTCTATCG 60.591 55.000 14.44 1.22 43.12 2.92
3287 8926 2.616960 TCACCTAATGTAGCAGCAACG 58.383 47.619 0.00 0.00 0.00 4.10
3296 8935 7.127186 TCCATTGAATCCTCTTCACCTAATGTA 59.873 37.037 0.00 0.00 0.00 2.29
3380 9019 7.882791 TGTGTGATACCTGTGATAATGAAAAGT 59.117 33.333 0.00 0.00 0.00 2.66
3528 9168 3.244105 CGGAAGGCAACACGTCTG 58.756 61.111 0.00 0.00 41.41 3.51
3673 9314 0.459899 ACGAGGATGTATGCAGCGAA 59.540 50.000 0.00 0.00 0.00 4.70
3726 9368 6.593382 CCTATATCCTTGAAGTAAGCAGATGC 59.407 42.308 0.00 0.00 42.49 3.91
3747 9389 8.810041 AGAATGCAGAAAATGAAAAACTCCTAT 58.190 29.630 0.00 0.00 0.00 2.57
3772 9415 7.308589 CCACCTAAGAACAACCATTCAAGTTAG 60.309 40.741 0.00 0.00 0.00 2.34
3830 9473 2.176273 CCAGGAGAATGAAGCGGCG 61.176 63.158 0.51 0.51 0.00 6.46
3972 9616 8.242729 AGATGTTGAGAAAAGAAGTCCATTTT 57.757 30.769 0.00 0.00 0.00 1.82
4051 9705 7.552687 TGACCCAAGTAGTCATACAATGAAATC 59.447 37.037 0.00 0.00 41.69 2.17
4193 9867 3.455910 TCAAGGTATCACATTCCTCTGGG 59.544 47.826 0.00 0.00 0.00 4.45
4229 9903 2.509336 CCTGTACTCAAGGCGCCG 60.509 66.667 23.20 9.47 0.00 6.46
4232 9906 1.218316 GGACCCTGTACTCAAGGCG 59.782 63.158 0.00 0.00 0.00 5.52
4250 9924 7.340232 TCCCATTCATTTGACCATTTAGAAGAG 59.660 37.037 0.00 0.00 0.00 2.85
4256 9930 7.552050 AGTTTCCCATTCATTTGACCATTTA 57.448 32.000 0.00 0.00 0.00 1.40
4267 9941 5.127682 GGAAGTGCATTAGTTTCCCATTCAT 59.872 40.000 0.00 0.00 34.38 2.57
4268 9942 4.462483 GGAAGTGCATTAGTTTCCCATTCA 59.538 41.667 0.00 0.00 34.38 2.57
4586 10299 0.776451 CGTTCTGTCAAAGACCGACG 59.224 55.000 0.00 0.00 43.03 5.12
4638 10355 7.968405 GGCATTTAGGTAGTTTTACAGTTGATG 59.032 37.037 0.00 0.00 0.00 3.07
4639 10356 7.122204 GGGCATTTAGGTAGTTTTACAGTTGAT 59.878 37.037 0.00 0.00 0.00 2.57
4640 10357 6.431852 GGGCATTTAGGTAGTTTTACAGTTGA 59.568 38.462 0.00 0.00 0.00 3.18
4641 10358 6.207810 TGGGCATTTAGGTAGTTTTACAGTTG 59.792 38.462 0.00 0.00 0.00 3.16
4642 10359 6.308566 TGGGCATTTAGGTAGTTTTACAGTT 58.691 36.000 0.00 0.00 0.00 3.16
4643 10360 5.883180 TGGGCATTTAGGTAGTTTTACAGT 58.117 37.500 0.00 0.00 0.00 3.55
4692 10409 7.334858 TCAATGCCAGTGTCATAGTATGTTTA 58.665 34.615 9.94 0.00 0.00 2.01
4729 10446 4.039730 GGCCACATGTACATATGTCTCTCT 59.960 45.833 12.68 0.00 39.17 3.10
4730 10447 4.202253 TGGCCACATGTACATATGTCTCTC 60.202 45.833 12.68 2.78 39.17 3.20
4750 10467 5.351458 GTCCCTGATACAATTTTGAATGGC 58.649 41.667 0.00 0.00 0.00 4.40
4771 10488 0.179097 GCTGGAGATCTGAACGGGTC 60.179 60.000 0.00 0.00 0.00 4.46
4772 10489 0.904865 TGCTGGAGATCTGAACGGGT 60.905 55.000 0.00 0.00 0.00 5.28
4833 10583 1.151668 GGTCTTGCAGCAGTAGTGTG 58.848 55.000 0.00 0.00 0.00 3.82
4836 10586 2.028930 GTGTAGGTCTTGCAGCAGTAGT 60.029 50.000 0.00 0.00 0.00 2.73
4837 10587 2.232452 AGTGTAGGTCTTGCAGCAGTAG 59.768 50.000 0.00 0.00 0.00 2.57
4838 10588 2.029020 CAGTGTAGGTCTTGCAGCAGTA 60.029 50.000 0.00 0.00 0.00 2.74
4865 10615 7.172190 ACAACAGATTCAGAGTGTAAGTTCATG 59.828 37.037 0.00 0.00 0.00 3.07
4952 10702 1.088340 CCACGATCAAGAGCTGCCTG 61.088 60.000 0.00 0.00 0.00 4.85
4953 10703 1.220206 CCACGATCAAGAGCTGCCT 59.780 57.895 0.00 0.00 0.00 4.75
4956 10709 0.392193 AAGGCCACGATCAAGAGCTG 60.392 55.000 5.01 0.00 0.00 4.24
4975 10728 2.927004 GACAACTTGGCGATGTCCA 58.073 52.632 0.00 0.00 38.93 4.02
5048 10801 7.764443 CACTGTAGTGGTTTAGTAACTATGCAT 59.236 37.037 3.79 3.79 42.10 3.96
5179 10957 0.465705 TCAGGAGATTCATGTCGCCC 59.534 55.000 2.96 0.00 38.68 6.13
5192 10970 0.689623 AAGCACAGGTCCTTCAGGAG 59.310 55.000 0.00 0.00 46.49 3.69
5200 10978 1.376553 GAGAGCCAAGCACAGGTCC 60.377 63.158 0.00 0.00 0.00 4.46
5211 10989 0.616111 GAGTGGAGGAAGGAGAGCCA 60.616 60.000 0.00 0.00 36.29 4.75
5213 10991 0.823460 CTGAGTGGAGGAAGGAGAGC 59.177 60.000 0.00 0.00 0.00 4.09
5220 10998 1.194781 GCTGACCCTGAGTGGAGGAA 61.195 60.000 0.00 0.00 38.35 3.36
5224 11002 2.117423 TCGCTGACCCTGAGTGGA 59.883 61.111 0.00 0.00 38.35 4.02
5234 11012 0.315568 ACACTCAAGAGGTCGCTGAC 59.684 55.000 1.73 0.79 0.00 3.51
5235 11013 0.315251 CACACTCAAGAGGTCGCTGA 59.685 55.000 1.73 0.00 0.00 4.26
5236 11014 1.287730 GCACACTCAAGAGGTCGCTG 61.288 60.000 1.73 0.00 0.00 5.18
5237 11015 1.005630 GCACACTCAAGAGGTCGCT 60.006 57.895 1.73 0.00 0.00 4.93
5238 11016 2.029844 GGCACACTCAAGAGGTCGC 61.030 63.158 1.73 0.79 0.00 5.19
5239 11017 1.734477 CGGCACACTCAAGAGGTCG 60.734 63.158 1.73 0.00 0.00 4.79
5255 11033 4.452733 GGCGGGAGACAAGGACGG 62.453 72.222 0.00 0.00 38.26 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.