Multiple sequence alignment - TraesCS4A01G008000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G008000 chr4A 100.000 2887 0 0 1 2887 4846934 4849820 0.000000e+00 5332.0
1 TraesCS4A01G008000 chr4B 82.799 1779 126 59 327 2034 582554434 582552765 0.000000e+00 1424.0
2 TraesCS4A01G008000 chr4B 82.331 266 23 11 2564 2821 582551735 582551486 2.920000e-50 209.0
3 TraesCS4A01G008000 chr4D 80.661 1784 153 88 312 2034 465602579 465600927 0.000000e+00 1206.0
4 TraesCS4A01G008000 chr4D 88.393 224 10 9 2616 2831 465599579 465599364 3.690000e-64 255.0
5 TraesCS4A01G008000 chr4D 85.075 67 10 0 1489 1555 465606298 465606364 5.160000e-08 69.4
6 TraesCS4A01G008000 chr7D 91.139 79 5 2 2049 2127 424852883 424852959 3.930000e-19 106.0
7 TraesCS4A01G008000 chr5D 91.139 79 6 1 2049 2127 250145638 250145561 3.930000e-19 106.0
8 TraesCS4A01G008000 chr5D 90.000 80 4 3 2049 2127 360943232 360943156 1.830000e-17 100.0
9 TraesCS4A01G008000 chr5B 90.123 81 5 2 2049 2128 449753581 449753659 5.090000e-18 102.0
10 TraesCS4A01G008000 chr3D 89.873 79 6 2 2049 2127 41968606 41968682 1.830000e-17 100.0
11 TraesCS4A01G008000 chr6D 89.873 79 5 2 2049 2127 265667862 265667787 6.580000e-17 99.0
12 TraesCS4A01G008000 chr6D 89.873 79 5 2 2049 2127 283850964 283850889 6.580000e-17 99.0
13 TraesCS4A01G008000 chr6D 89.873 79 5 2 2049 2127 350747931 350748006 6.580000e-17 99.0
14 TraesCS4A01G008000 chr6D 89.873 79 5 2 2049 2127 377642949 377642874 6.580000e-17 99.0
15 TraesCS4A01G008000 chr6A 94.118 34 2 0 2391 2424 443427317 443427350 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G008000 chr4A 4846934 4849820 2886 False 5332.0 5332 100.000 1 2887 1 chr4A.!!$F1 2886
1 TraesCS4A01G008000 chr4B 582551486 582554434 2948 True 816.5 1424 82.565 327 2821 2 chr4B.!!$R1 2494
2 TraesCS4A01G008000 chr4D 465599364 465602579 3215 True 730.5 1206 84.527 312 2831 2 chr4D.!!$R1 2519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.104855 TGCATGGTTCGGCTAGCTAG 59.895 55.0 16.84 16.84 0.00 3.42 F
1021 1086 0.037046 ATAACACGGGGTCCACGAAC 60.037 55.0 23.23 0.00 34.93 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1801 0.110056 GTTGCCGTGCATGTTGAGAG 60.110 55.0 4.96 0.0 38.76 3.20 R
2860 3878 0.106918 TTCCTGCAACTGGTTTCCGT 60.107 50.0 0.00 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.447408 TCGGGAGGAAGTAGTATGCA 57.553 50.000 0.00 0.00 0.00 3.96
21 22 2.958818 TCGGGAGGAAGTAGTATGCAT 58.041 47.619 3.79 3.79 0.00 3.96
22 23 2.628178 TCGGGAGGAAGTAGTATGCATG 59.372 50.000 10.16 0.00 0.00 4.06
23 24 2.289072 CGGGAGGAAGTAGTATGCATGG 60.289 54.545 10.16 0.00 0.00 3.66
24 25 2.706190 GGGAGGAAGTAGTATGCATGGT 59.294 50.000 10.16 0.00 0.00 3.55
25 26 3.136626 GGGAGGAAGTAGTATGCATGGTT 59.863 47.826 10.16 0.00 0.00 3.67
26 27 4.381411 GGAGGAAGTAGTATGCATGGTTC 58.619 47.826 10.16 4.80 0.00 3.62
27 28 4.051922 GAGGAAGTAGTATGCATGGTTCG 58.948 47.826 10.16 0.00 0.00 3.95
28 29 3.131396 GGAAGTAGTATGCATGGTTCGG 58.869 50.000 10.16 0.00 0.00 4.30
29 30 2.240493 AGTAGTATGCATGGTTCGGC 57.760 50.000 10.16 0.00 0.00 5.54
30 31 1.762957 AGTAGTATGCATGGTTCGGCT 59.237 47.619 10.16 0.00 0.00 5.52
31 32 2.963101 AGTAGTATGCATGGTTCGGCTA 59.037 45.455 10.16 0.00 0.00 3.93
32 33 2.533266 AGTATGCATGGTTCGGCTAG 57.467 50.000 10.16 0.00 0.00 3.42
33 34 0.868406 GTATGCATGGTTCGGCTAGC 59.132 55.000 10.16 6.04 0.00 3.42
34 35 0.758734 TATGCATGGTTCGGCTAGCT 59.241 50.000 15.72 0.00 0.00 3.32
35 36 0.758734 ATGCATGGTTCGGCTAGCTA 59.241 50.000 15.72 0.00 0.00 3.32
36 37 0.104855 TGCATGGTTCGGCTAGCTAG 59.895 55.000 16.84 16.84 0.00 3.42
37 38 0.389391 GCATGGTTCGGCTAGCTAGA 59.611 55.000 25.15 11.81 0.00 2.43
38 39 1.604185 GCATGGTTCGGCTAGCTAGAG 60.604 57.143 25.15 16.43 0.00 2.43
39 40 1.957177 CATGGTTCGGCTAGCTAGAGA 59.043 52.381 25.15 18.41 0.00 3.10
40 41 1.681538 TGGTTCGGCTAGCTAGAGAG 58.318 55.000 25.15 13.64 0.00 3.20
41 42 1.212195 TGGTTCGGCTAGCTAGAGAGA 59.788 52.381 25.15 15.65 0.00 3.10
42 43 1.877443 GGTTCGGCTAGCTAGAGAGAG 59.123 57.143 25.15 9.54 0.00 3.20
43 44 2.485835 GGTTCGGCTAGCTAGAGAGAGA 60.486 54.545 25.15 11.60 0.00 3.10
44 45 3.207778 GTTCGGCTAGCTAGAGAGAGAA 58.792 50.000 25.15 16.24 0.00 2.87
45 46 3.780804 TCGGCTAGCTAGAGAGAGAAT 57.219 47.619 25.15 0.00 0.00 2.40
46 47 3.670625 TCGGCTAGCTAGAGAGAGAATC 58.329 50.000 25.15 2.87 0.00 2.52
47 48 2.415168 CGGCTAGCTAGAGAGAGAATCG 59.585 54.545 25.15 8.70 42.67 3.34
48 49 3.670625 GGCTAGCTAGAGAGAGAATCGA 58.329 50.000 25.15 0.00 42.67 3.59
49 50 3.435671 GGCTAGCTAGAGAGAGAATCGAC 59.564 52.174 25.15 1.40 42.67 4.20
50 51 3.122948 GCTAGCTAGAGAGAGAATCGACG 59.877 52.174 25.15 0.00 42.67 5.12
51 52 2.489971 AGCTAGAGAGAGAATCGACGG 58.510 52.381 0.00 0.00 42.67 4.79
52 53 2.103432 AGCTAGAGAGAGAATCGACGGA 59.897 50.000 0.00 0.00 42.67 4.69
53 54 2.222445 GCTAGAGAGAGAATCGACGGAC 59.778 54.545 0.00 0.00 42.67 4.79
54 55 1.292061 AGAGAGAGAATCGACGGACG 58.708 55.000 0.00 0.00 42.67 4.79
55 56 0.316360 GAGAGAGAATCGACGGACGC 60.316 60.000 0.00 0.00 42.67 5.19
56 57 1.025113 AGAGAGAATCGACGGACGCA 61.025 55.000 0.00 0.00 42.67 5.24
57 58 0.862283 GAGAGAATCGACGGACGCAC 60.862 60.000 0.00 0.00 42.67 5.34
58 59 1.154093 GAGAATCGACGGACGCACA 60.154 57.895 0.00 0.00 42.26 4.57
59 60 0.731514 GAGAATCGACGGACGCACAA 60.732 55.000 0.00 0.00 42.26 3.33
60 61 1.007336 AGAATCGACGGACGCACAAC 61.007 55.000 0.00 0.00 42.26 3.32
76 77 2.105323 CAACGACACAAGTTGGCTTC 57.895 50.000 7.96 0.00 43.64 3.86
77 78 0.655733 AACGACACAAGTTGGCTTCG 59.344 50.000 16.79 16.79 33.15 3.79
78 79 1.082756 CGACACAAGTTGGCTTCGC 60.083 57.895 7.96 0.00 31.49 4.70
88 89 3.539107 GGCTTCGCCGAACGTACG 61.539 66.667 15.01 15.01 44.19 3.67
96 97 4.503314 CGAACGTACGGGGGCTCC 62.503 72.222 21.06 0.00 0.00 4.70
97 98 3.073101 GAACGTACGGGGGCTCCT 61.073 66.667 21.06 0.00 0.00 3.69
98 99 2.605601 AACGTACGGGGGCTCCTT 60.606 61.111 21.06 0.00 0.00 3.36
99 100 2.569072 GAACGTACGGGGGCTCCTTC 62.569 65.000 21.06 7.68 0.00 3.46
100 101 4.203076 CGTACGGGGGCTCCTTCG 62.203 72.222 7.57 0.00 0.00 3.79
101 102 3.846430 GTACGGGGGCTCCTTCGG 61.846 72.222 0.52 0.00 0.00 4.30
106 107 3.862991 GGGGCTCCTTCGGGCTAC 61.863 72.222 0.00 0.00 34.44 3.58
107 108 3.862991 GGGCTCCTTCGGGCTACC 61.863 72.222 0.00 0.00 34.44 3.18
108 109 3.862991 GGCTCCTTCGGGCTACCC 61.863 72.222 0.00 0.00 41.09 3.69
149 150 4.430765 GCTCGAACGCGGGGAGAA 62.431 66.667 22.11 0.00 38.79 2.87
150 151 2.260434 CTCGAACGCGGGGAGAAA 59.740 61.111 12.47 0.00 38.28 2.52
151 152 1.153628 CTCGAACGCGGGGAGAAAT 60.154 57.895 12.47 0.00 38.28 2.17
152 153 1.421410 CTCGAACGCGGGGAGAAATG 61.421 60.000 12.47 0.00 38.28 2.32
153 154 2.461110 CGAACGCGGGGAGAAATGG 61.461 63.158 12.47 0.00 0.00 3.16
154 155 1.078708 GAACGCGGGGAGAAATGGA 60.079 57.895 12.47 0.00 0.00 3.41
155 156 1.078426 AACGCGGGGAGAAATGGAG 60.078 57.895 12.47 0.00 0.00 3.86
156 157 1.550130 AACGCGGGGAGAAATGGAGA 61.550 55.000 12.47 0.00 0.00 3.71
157 158 1.220749 CGCGGGGAGAAATGGAGAA 59.779 57.895 0.00 0.00 0.00 2.87
158 159 0.811616 CGCGGGGAGAAATGGAGAAG 60.812 60.000 0.00 0.00 0.00 2.85
159 160 0.541863 GCGGGGAGAAATGGAGAAGA 59.458 55.000 0.00 0.00 0.00 2.87
160 161 1.065418 GCGGGGAGAAATGGAGAAGAA 60.065 52.381 0.00 0.00 0.00 2.52
161 162 2.422093 GCGGGGAGAAATGGAGAAGAAT 60.422 50.000 0.00 0.00 0.00 2.40
162 163 3.471680 CGGGGAGAAATGGAGAAGAATC 58.528 50.000 0.00 0.00 0.00 2.52
163 164 3.471680 GGGGAGAAATGGAGAAGAATCG 58.528 50.000 0.00 0.00 0.00 3.34
164 165 3.118223 GGGGAGAAATGGAGAAGAATCGT 60.118 47.826 0.00 0.00 0.00 3.73
165 166 3.873952 GGGAGAAATGGAGAAGAATCGTG 59.126 47.826 0.00 0.00 0.00 4.35
166 167 3.311048 GGAGAAATGGAGAAGAATCGTGC 59.689 47.826 0.00 0.00 0.00 5.34
167 168 3.935203 GAGAAATGGAGAAGAATCGTGCA 59.065 43.478 0.00 0.00 0.00 4.57
168 169 3.937706 AGAAATGGAGAAGAATCGTGCAG 59.062 43.478 0.00 0.00 0.00 4.41
169 170 3.616956 AATGGAGAAGAATCGTGCAGA 57.383 42.857 0.00 0.00 0.00 4.26
170 171 3.834489 ATGGAGAAGAATCGTGCAGAT 57.166 42.857 0.00 0.00 42.43 2.90
179 180 2.800881 ATCGTGCAGATTCGCTATGA 57.199 45.000 0.00 0.00 35.73 2.15
180 181 2.577449 TCGTGCAGATTCGCTATGAA 57.423 45.000 0.00 0.00 41.81 2.57
181 182 2.463876 TCGTGCAGATTCGCTATGAAG 58.536 47.619 0.00 0.00 40.65 3.02
182 183 1.524355 CGTGCAGATTCGCTATGAAGG 59.476 52.381 0.00 0.00 40.65 3.46
183 184 1.262683 GTGCAGATTCGCTATGAAGGC 59.737 52.381 0.00 0.00 40.65 4.35
184 185 1.134431 TGCAGATTCGCTATGAAGGCA 60.134 47.619 0.00 0.00 40.65 4.75
185 186 1.530293 GCAGATTCGCTATGAAGGCAG 59.470 52.381 0.00 0.00 40.65 4.85
186 187 2.831333 CAGATTCGCTATGAAGGCAGT 58.169 47.619 0.00 0.00 40.65 4.40
187 188 2.543012 CAGATTCGCTATGAAGGCAGTG 59.457 50.000 0.00 0.00 40.65 3.66
188 189 2.169352 AGATTCGCTATGAAGGCAGTGT 59.831 45.455 0.00 0.00 40.65 3.55
189 190 2.472695 TTCGCTATGAAGGCAGTGTT 57.527 45.000 0.00 0.00 31.44 3.32
190 191 1.725641 TCGCTATGAAGGCAGTGTTG 58.274 50.000 0.00 0.00 0.00 3.33
191 192 1.001974 TCGCTATGAAGGCAGTGTTGT 59.998 47.619 0.00 0.00 0.00 3.32
192 193 1.806542 CGCTATGAAGGCAGTGTTGTT 59.193 47.619 0.00 0.00 0.00 2.83
193 194 2.226437 CGCTATGAAGGCAGTGTTGTTT 59.774 45.455 0.00 0.00 0.00 2.83
194 195 3.667960 CGCTATGAAGGCAGTGTTGTTTC 60.668 47.826 0.00 0.00 0.00 2.78
195 196 3.253188 GCTATGAAGGCAGTGTTGTTTCA 59.747 43.478 0.00 0.00 35.79 2.69
196 197 3.996150 ATGAAGGCAGTGTTGTTTCAG 57.004 42.857 0.00 0.00 35.25 3.02
197 198 1.405105 TGAAGGCAGTGTTGTTTCAGC 59.595 47.619 0.00 0.00 31.25 4.26
198 199 0.381801 AAGGCAGTGTTGTTTCAGCG 59.618 50.000 0.00 0.00 0.00 5.18
199 200 1.658409 GGCAGTGTTGTTTCAGCGC 60.658 57.895 0.00 0.00 0.00 5.92
200 201 2.005537 GCAGTGTTGTTTCAGCGCG 61.006 57.895 0.00 0.00 30.73 6.86
201 202 1.351707 CAGTGTTGTTTCAGCGCGT 59.648 52.632 8.43 0.00 30.73 6.01
202 203 0.654472 CAGTGTTGTTTCAGCGCGTC 60.654 55.000 8.43 0.00 30.73 5.19
203 204 1.717728 GTGTTGTTTCAGCGCGTCG 60.718 57.895 8.43 0.00 0.00 5.12
204 205 2.127758 GTTGTTTCAGCGCGTCGG 60.128 61.111 8.43 0.62 0.00 4.79
205 206 3.342627 TTGTTTCAGCGCGTCGGG 61.343 61.111 8.43 4.69 0.00 5.14
206 207 4.595538 TGTTTCAGCGCGTCGGGT 62.596 61.111 8.43 0.00 0.00 5.28
207 208 3.343421 GTTTCAGCGCGTCGGGTT 61.343 61.111 8.43 1.44 0.00 4.11
208 209 3.039588 TTTCAGCGCGTCGGGTTC 61.040 61.111 8.43 0.00 0.00 3.62
211 212 4.764336 CAGCGCGTCGGGTTCGTA 62.764 66.667 8.43 0.00 37.69 3.43
212 213 4.471726 AGCGCGTCGGGTTCGTAG 62.472 66.667 8.43 0.00 37.69 3.51
220 221 3.291611 GGGTTCGTAGCCGGAAGA 58.708 61.111 5.05 0.00 31.15 2.87
221 222 1.141234 GGGTTCGTAGCCGGAAGAG 59.859 63.158 5.05 0.00 31.15 2.85
222 223 1.141234 GGTTCGTAGCCGGAAGAGG 59.859 63.158 5.05 0.00 33.95 3.69
223 224 1.318158 GGTTCGTAGCCGGAAGAGGA 61.318 60.000 5.05 0.00 33.95 3.71
224 225 0.529378 GTTCGTAGCCGGAAGAGGAA 59.471 55.000 5.05 3.51 33.95 3.36
225 226 1.067354 GTTCGTAGCCGGAAGAGGAAA 60.067 52.381 5.05 0.00 33.95 3.13
226 227 1.481871 TCGTAGCCGGAAGAGGAAAT 58.518 50.000 5.05 0.00 33.95 2.17
227 228 1.136305 TCGTAGCCGGAAGAGGAAATG 59.864 52.381 5.05 0.00 33.95 2.32
228 229 1.806623 CGTAGCCGGAAGAGGAAATGG 60.807 57.143 5.05 0.00 0.00 3.16
229 230 0.180406 TAGCCGGAAGAGGAAATGGC 59.820 55.000 5.05 0.00 42.76 4.40
230 231 2.121538 GCCGGAAGAGGAAATGGCC 61.122 63.158 5.05 0.00 36.51 5.36
231 232 1.453928 CCGGAAGAGGAAATGGCCC 60.454 63.158 0.00 0.00 0.00 5.80
232 233 1.819632 CGGAAGAGGAAATGGCCCG 60.820 63.158 0.00 0.00 0.00 6.13
233 234 1.303282 GGAAGAGGAAATGGCCCGT 59.697 57.895 0.00 0.00 0.00 5.28
234 235 1.032114 GGAAGAGGAAATGGCCCGTG 61.032 60.000 0.00 0.00 0.00 4.94
235 236 1.657751 GAAGAGGAAATGGCCCGTGC 61.658 60.000 0.00 0.00 0.00 5.34
250 251 1.865865 CGTGCCGGAGCTAATAATGT 58.134 50.000 5.05 0.00 40.80 2.71
251 252 1.526887 CGTGCCGGAGCTAATAATGTG 59.473 52.381 5.05 0.00 40.80 3.21
252 253 1.264288 GTGCCGGAGCTAATAATGTGC 59.736 52.381 5.05 0.00 40.80 4.57
253 254 1.134250 TGCCGGAGCTAATAATGTGCA 60.134 47.619 5.05 0.00 40.80 4.57
254 255 1.532868 GCCGGAGCTAATAATGTGCAG 59.467 52.381 5.05 0.00 35.50 4.41
255 256 2.838736 CCGGAGCTAATAATGTGCAGT 58.161 47.619 0.00 0.00 0.00 4.40
256 257 2.545526 CCGGAGCTAATAATGTGCAGTG 59.454 50.000 0.00 0.00 0.00 3.66
257 258 3.198068 CGGAGCTAATAATGTGCAGTGT 58.802 45.455 0.00 0.00 0.00 3.55
258 259 4.368315 CGGAGCTAATAATGTGCAGTGTA 58.632 43.478 0.00 0.00 0.00 2.90
259 260 4.209288 CGGAGCTAATAATGTGCAGTGTAC 59.791 45.833 4.15 4.15 0.00 2.90
260 261 4.209288 GGAGCTAATAATGTGCAGTGTACG 59.791 45.833 6.88 0.00 0.00 3.67
261 262 4.755411 AGCTAATAATGTGCAGTGTACGT 58.245 39.130 6.88 3.37 0.00 3.57
262 263 4.566759 AGCTAATAATGTGCAGTGTACGTG 59.433 41.667 6.86 0.00 0.00 4.49
263 264 4.260212 GCTAATAATGTGCAGTGTACGTGG 60.260 45.833 6.86 0.00 0.00 4.94
264 265 1.434555 TAATGTGCAGTGTACGTGGC 58.565 50.000 6.86 0.00 0.00 5.01
265 266 1.565156 AATGTGCAGTGTACGTGGCG 61.565 55.000 6.86 0.00 0.00 5.69
266 267 4.072088 GTGCAGTGTACGTGGCGC 62.072 66.667 0.00 0.00 0.00 6.53
269 270 2.809601 CAGTGTACGTGGCGCCTC 60.810 66.667 29.70 23.91 0.00 4.70
270 271 4.415332 AGTGTACGTGGCGCCTCG 62.415 66.667 40.17 40.17 38.64 4.63
281 282 2.434185 CGCCTCGCCTAAAGTGCA 60.434 61.111 0.00 0.00 0.00 4.57
282 283 2.740714 CGCCTCGCCTAAAGTGCAC 61.741 63.158 9.40 9.40 0.00 4.57
283 284 2.740714 GCCTCGCCTAAAGTGCACG 61.741 63.158 12.01 0.00 0.00 5.34
284 285 2.740714 CCTCGCCTAAAGTGCACGC 61.741 63.158 12.01 7.42 0.00 5.34
285 286 3.071459 CTCGCCTAAAGTGCACGCG 62.071 63.158 24.21 24.21 44.00 6.01
286 287 4.794241 CGCCTAAAGTGCACGCGC 62.794 66.667 20.13 13.10 36.02 6.86
287 288 4.794241 GCCTAAAGTGCACGCGCG 62.794 66.667 30.96 30.96 42.97 6.86
288 289 4.147322 CCTAAAGTGCACGCGCGG 62.147 66.667 35.22 23.25 42.97 6.46
289 290 4.147322 CTAAAGTGCACGCGCGGG 62.147 66.667 35.22 33.30 42.97 6.13
290 291 4.973055 TAAAGTGCACGCGCGGGT 62.973 61.111 34.71 24.30 42.97 5.28
302 303 4.468007 GCGGGTTTGGCGGTATAT 57.532 55.556 0.00 0.00 0.00 0.86
303 304 1.946267 GCGGGTTTGGCGGTATATG 59.054 57.895 0.00 0.00 0.00 1.78
304 305 0.816421 GCGGGTTTGGCGGTATATGT 60.816 55.000 0.00 0.00 0.00 2.29
305 306 1.670791 CGGGTTTGGCGGTATATGTT 58.329 50.000 0.00 0.00 0.00 2.71
306 307 1.332375 CGGGTTTGGCGGTATATGTTG 59.668 52.381 0.00 0.00 0.00 3.33
307 308 2.371306 GGGTTTGGCGGTATATGTTGT 58.629 47.619 0.00 0.00 0.00 3.32
308 309 2.098443 GGGTTTGGCGGTATATGTTGTG 59.902 50.000 0.00 0.00 0.00 3.33
309 310 2.098443 GGTTTGGCGGTATATGTTGTGG 59.902 50.000 0.00 0.00 0.00 4.17
310 311 2.750712 GTTTGGCGGTATATGTTGTGGT 59.249 45.455 0.00 0.00 0.00 4.16
330 331 1.264020 TGAAAGAAGTGATGCACGTGC 59.736 47.619 33.11 33.11 39.64 5.34
403 405 7.996098 TCCAAGGAACACTTTTATTTAGGAG 57.004 36.000 0.00 0.00 37.29 3.69
404 406 7.523415 TCCAAGGAACACTTTTATTTAGGAGT 58.477 34.615 0.00 0.00 37.29 3.85
464 467 4.102996 GGACCCTAATTAACCAACCGGATA 59.897 45.833 9.46 0.00 35.59 2.59
514 517 3.353836 ATCGCCCACAACACACGC 61.354 61.111 0.00 0.00 0.00 5.34
517 520 4.307908 GCCCACAACACACGCGAC 62.308 66.667 15.93 0.00 0.00 5.19
532 535 3.955429 CGACACATTCGCAGAAAGG 57.045 52.632 0.00 0.00 45.90 3.11
534 537 1.798223 CGACACATTCGCAGAAAGGAA 59.202 47.619 0.00 0.00 45.90 3.36
538 541 1.073923 ACATTCGCAGAAAGGAACCCT 59.926 47.619 0.00 0.00 45.90 4.34
539 542 2.304761 ACATTCGCAGAAAGGAACCCTA 59.695 45.455 0.00 0.00 45.90 3.53
543 546 1.475213 CGCAGAAAGGAACCCTATCCC 60.475 57.143 0.00 0.00 40.59 3.85
605 609 3.877801 CGGTTAATCACGCAGCTTC 57.122 52.632 0.00 0.00 0.00 3.86
645 650 4.143333 ACGGATTCGGGCCACTCG 62.143 66.667 4.39 0.00 41.39 4.18
659 664 3.385384 CTCGTCCAGCCAGCCAGA 61.385 66.667 0.00 0.00 0.00 3.86
661 666 4.463879 CGTCCAGCCAGCCAGAGG 62.464 72.222 0.00 0.00 0.00 3.69
734 756 1.545706 GGAAGGAGGAGACGGTTGCT 61.546 60.000 0.00 0.00 0.00 3.91
799 838 3.407967 GATCCGCCACCTTCCCCA 61.408 66.667 0.00 0.00 0.00 4.96
800 839 3.406595 GATCCGCCACCTTCCCCAG 62.407 68.421 0.00 0.00 0.00 4.45
958 1023 1.242665 ACCAACTCCTCGTCTCGTCC 61.243 60.000 0.00 0.00 0.00 4.79
974 1039 2.361357 CCCGTCTCGTCTCCACCT 60.361 66.667 0.00 0.00 0.00 4.00
975 1040 2.408241 CCCGTCTCGTCTCCACCTC 61.408 68.421 0.00 0.00 0.00 3.85
985 1050 4.741239 TCCACCTCCCCTGCCTCC 62.741 72.222 0.00 0.00 0.00 4.30
1019 1084 1.779221 ATATAACACGGGGTCCACGA 58.221 50.000 23.23 0.00 34.93 4.35
1020 1085 1.554836 TATAACACGGGGTCCACGAA 58.445 50.000 23.23 2.58 34.93 3.85
1021 1086 0.037046 ATAACACGGGGTCCACGAAC 60.037 55.000 23.23 0.00 34.93 3.95
1022 1087 1.114722 TAACACGGGGTCCACGAACT 61.115 55.000 23.23 5.87 34.93 3.01
1024 1089 3.677648 ACGGGGTCCACGAACTCG 61.678 66.667 23.23 0.00 46.33 4.18
1026 1091 2.707849 CGGGGTCCACGAACTCGAT 61.708 63.158 8.16 0.00 43.02 3.59
1100 1168 1.597461 CACCGAAACCCTCCCTCTC 59.403 63.158 0.00 0.00 0.00 3.20
1116 1184 2.511829 TCTCTCGTCTCGGCTCGG 60.512 66.667 0.00 0.00 0.00 4.63
1117 1185 4.244802 CTCTCGTCTCGGCTCGGC 62.245 72.222 0.00 0.00 0.00 5.54
1118 1186 4.779966 TCTCGTCTCGGCTCGGCT 62.780 66.667 0.00 0.00 0.00 5.52
1119 1187 4.244802 CTCGTCTCGGCTCGGCTC 62.245 72.222 0.00 0.00 0.00 4.70
1264 1338 0.734253 GTGCTCAGCCAGTACGTCAG 60.734 60.000 0.00 0.00 0.00 3.51
1547 1633 2.048222 TCGAAGCGCAAGGACAGG 60.048 61.111 11.47 0.00 38.28 4.00
1611 1703 1.960250 GCGCATCATGAGGAGGAGC 60.960 63.158 12.39 6.67 45.21 4.70
1614 1706 1.370437 CATCATGAGGAGGAGCCGG 59.630 63.158 0.00 0.00 43.43 6.13
1643 1741 0.610687 AGAAGAAGGGCAAGACGGAG 59.389 55.000 0.00 0.00 0.00 4.63
1658 1756 1.688211 GGAGGCTTCTTCCTGGCTT 59.312 57.895 0.00 0.00 39.23 4.35
1719 1821 0.817229 TCTCAACATGCACGGCAACA 60.817 50.000 2.68 0.00 43.62 3.33
1755 1858 2.091541 GTGATCAGCGGGGAATTGAAA 58.908 47.619 0.00 0.00 0.00 2.69
1756 1859 2.091541 TGATCAGCGGGGAATTGAAAC 58.908 47.619 0.00 0.00 0.00 2.78
1764 1867 2.288763 CGGGGAATTGAAACAACCCTTG 60.289 50.000 0.00 0.00 40.31 3.61
1790 1896 2.916716 CGTAGCACGGTGTTATTAACGT 59.083 45.455 10.24 0.00 38.08 3.99
1791 1897 3.001758 CGTAGCACGGTGTTATTAACGTC 60.002 47.826 10.24 0.00 38.08 4.34
1792 1898 3.308438 AGCACGGTGTTATTAACGTCT 57.692 42.857 10.24 0.00 37.48 4.18
1793 1899 4.439305 AGCACGGTGTTATTAACGTCTA 57.561 40.909 10.24 0.00 37.48 2.59
1794 1900 4.418392 AGCACGGTGTTATTAACGTCTAG 58.582 43.478 10.24 0.00 37.48 2.43
1795 1901 4.082571 AGCACGGTGTTATTAACGTCTAGT 60.083 41.667 10.24 1.67 37.48 2.57
1796 1902 5.123820 AGCACGGTGTTATTAACGTCTAGTA 59.876 40.000 10.24 0.00 37.48 1.82
1797 1903 5.453587 GCACGGTGTTATTAACGTCTAGTAG 59.546 44.000 10.24 0.00 37.48 2.57
1798 1904 6.546395 CACGGTGTTATTAACGTCTAGTAGT 58.454 40.000 0.00 0.00 37.48 2.73
1799 1905 7.676338 GCACGGTGTTATTAACGTCTAGTAGTA 60.676 40.741 10.24 0.00 37.48 1.82
1800 1906 7.848051 CACGGTGTTATTAACGTCTAGTAGTAG 59.152 40.741 0.00 0.00 37.48 2.57
1801 1907 7.549488 ACGGTGTTATTAACGTCTAGTAGTAGT 59.451 37.037 4.51 0.00 33.92 2.73
1802 1908 9.031360 CGGTGTTATTAACGTCTAGTAGTAGTA 57.969 37.037 4.51 0.00 0.00 1.82
1873 1980 3.044986 GAGCGCGGTAACATAATCGTAA 58.955 45.455 12.41 0.00 0.00 3.18
1874 1981 2.791004 AGCGCGGTAACATAATCGTAAC 59.209 45.455 10.12 0.00 0.00 2.50
1876 1983 3.182972 GCGCGGTAACATAATCGTAACAT 59.817 43.478 8.83 0.00 0.00 2.71
1877 1984 4.318263 GCGCGGTAACATAATCGTAACATT 60.318 41.667 8.83 0.00 0.00 2.71
1879 1986 5.610982 CGCGGTAACATAATCGTAACATTCC 60.611 44.000 0.00 0.00 0.00 3.01
1880 1987 5.234757 GCGGTAACATAATCGTAACATTCCA 59.765 40.000 0.00 0.00 0.00 3.53
1881 1988 6.073440 GCGGTAACATAATCGTAACATTCCAT 60.073 38.462 0.00 0.00 0.00 3.41
1882 1989 7.507304 CGGTAACATAATCGTAACATTCCATC 58.493 38.462 0.00 0.00 0.00 3.51
1883 1990 7.170151 CGGTAACATAATCGTAACATTCCATCA 59.830 37.037 0.00 0.00 0.00 3.07
1884 1991 8.832521 GGTAACATAATCGTAACATTCCATCAA 58.167 33.333 0.00 0.00 0.00 2.57
1903 2010 7.125507 TCCATCAAAATTTAACCCATGCACTAT 59.874 33.333 0.00 0.00 0.00 2.12
1918 2029 9.467258 CCCATGCACTATGTTTCTTAATTTATG 57.533 33.333 0.00 0.00 34.87 1.90
1966 2077 5.473931 CAAGTTGCTCGCCTCATATATACT 58.526 41.667 0.00 0.00 0.00 2.12
2041 2162 9.490083 AACACTATTATATATGGTACTCCCTCC 57.510 37.037 0.00 0.00 0.00 4.30
2042 2163 7.778853 ACACTATTATATATGGTACTCCCTCCG 59.221 40.741 0.00 0.00 0.00 4.63
2043 2164 7.778853 CACTATTATATATGGTACTCCCTCCGT 59.221 40.741 0.00 0.00 0.00 4.69
2044 2165 7.997803 ACTATTATATATGGTACTCCCTCCGTC 59.002 40.741 0.00 0.00 0.00 4.79
2045 2166 1.906990 ATATGGTACTCCCTCCGTCG 58.093 55.000 0.00 0.00 0.00 5.12
2046 2167 0.179009 TATGGTACTCCCTCCGTCGG 60.179 60.000 4.39 4.39 0.00 4.79
2047 2168 3.525545 GGTACTCCCTCCGTCGGC 61.526 72.222 6.34 0.00 0.00 5.54
2048 2169 2.753043 GTACTCCCTCCGTCGGCA 60.753 66.667 6.34 0.00 0.00 5.69
2049 2170 2.439701 TACTCCCTCCGTCGGCAG 60.440 66.667 6.34 5.10 0.00 4.85
2050 2171 2.975265 TACTCCCTCCGTCGGCAGA 61.975 63.158 6.34 1.91 0.00 4.26
2051 2172 2.488771 TACTCCCTCCGTCGGCAGAA 62.489 60.000 6.34 0.00 0.00 3.02
2052 2173 3.358076 CTCCCTCCGTCGGCAGAAC 62.358 68.421 6.34 0.00 0.00 3.01
2053 2174 4.796231 CCCTCCGTCGGCAGAACG 62.796 72.222 6.34 0.00 0.00 3.95
2054 2175 4.052229 CCTCCGTCGGCAGAACGT 62.052 66.667 6.34 0.00 34.94 3.99
2055 2176 2.049433 CTCCGTCGGCAGAACGTT 60.049 61.111 6.34 0.00 34.94 3.99
2056 2177 1.663702 CTCCGTCGGCAGAACGTTT 60.664 57.895 6.34 0.00 34.94 3.60
2057 2178 1.219522 CTCCGTCGGCAGAACGTTTT 61.220 55.000 6.34 0.00 34.94 2.43
2058 2179 0.810823 TCCGTCGGCAGAACGTTTTT 60.811 50.000 6.34 0.00 34.94 1.94
2103 2224 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2104 2225 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2105 2226 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2106 2227 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2107 2228 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2108 2229 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2109 2230 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2110 2231 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2111 2232 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2127 2251 7.931948 CGGAGGGAGTATTACATACAAGAAAAT 59.068 37.037 0.00 0.00 38.21 1.82
2128 2252 9.628500 GGAGGGAGTATTACATACAAGAAAATT 57.372 33.333 0.00 0.00 38.21 1.82
2201 2352 9.108284 TGGAGGAAAATTTCAACAAAAGAATTC 57.892 29.630 8.09 0.00 0.00 2.17
2222 2373 7.698506 ATTCAATGAACTTCATGTCACATCT 57.301 32.000 4.99 0.00 37.15 2.90
2361 2520 3.614870 GCATGGGTGACAATTCTCCAAAC 60.615 47.826 0.00 0.00 37.16 2.93
2362 2521 3.304911 TGGGTGACAATTCTCCAAACA 57.695 42.857 0.00 0.00 37.16 2.83
2389 2548 9.860898 AAATTCATTAGAAGCTTCATAACAACC 57.139 29.630 27.57 0.00 37.14 3.77
2390 2549 7.994425 TTCATTAGAAGCTTCATAACAACCA 57.006 32.000 27.57 1.08 0.00 3.67
2391 2550 8.579850 TTCATTAGAAGCTTCATAACAACCAT 57.420 30.769 27.57 6.03 0.00 3.55
2392 2551 9.679661 TTCATTAGAAGCTTCATAACAACCATA 57.320 29.630 27.57 5.03 0.00 2.74
2393 2552 9.679661 TCATTAGAAGCTTCATAACAACCATAA 57.320 29.630 27.57 13.30 0.00 1.90
2394 2553 9.722056 CATTAGAAGCTTCATAACAACCATAAC 57.278 33.333 27.57 0.00 0.00 1.89
2405 3237 7.498900 TCATAACAACCATAACATGAGGATGAC 59.501 37.037 0.00 0.00 33.36 3.06
2429 3261 3.296322 TTCCTTTAGCAAACAATGGCG 57.704 42.857 0.00 0.00 34.54 5.69
2447 3279 1.869767 GCGGATCCTTGCTATGTTCAG 59.130 52.381 10.75 0.00 0.00 3.02
2472 3305 0.320374 TTTGTCAGGAATCGCCGAGT 59.680 50.000 0.00 0.00 43.43 4.18
2477 3310 0.721718 CAGGAATCGCCGAGTTTGTC 59.278 55.000 0.00 0.00 43.43 3.18
2488 3321 4.085619 CGCCGAGTTTGTCAAAGAAAATTG 60.086 41.667 0.00 0.00 0.00 2.32
2500 3334 5.048782 TCAAAGAAAATTGTCATCCTCGTGG 60.049 40.000 0.00 0.00 0.00 4.94
2529 3363 9.573133 ACATACTTTGCTATAAGAAACATTTGC 57.427 29.630 0.00 0.00 0.00 3.68
2536 3370 5.004726 GCTATAAGAAACATTTGCTTTGCCG 59.995 40.000 0.00 0.00 0.00 5.69
2547 3381 3.104843 TGCTTTGCCGTGCTTAAAAAT 57.895 38.095 0.00 0.00 0.00 1.82
2552 3386 3.552604 TGCCGTGCTTAAAAATCTGAC 57.447 42.857 0.00 0.00 0.00 3.51
2555 3389 2.505866 CGTGCTTAAAAATCTGACGCC 58.494 47.619 0.00 0.00 0.00 5.68
2557 3391 1.135803 TGCTTAAAAATCTGACGCCGC 60.136 47.619 0.00 0.00 0.00 6.53
2561 3395 2.262572 AAAAATCTGACGCCGCATTC 57.737 45.000 0.00 0.00 0.00 2.67
2563 3397 2.309528 AAATCTGACGCCGCATTCTA 57.690 45.000 0.00 0.00 0.00 2.10
2564 3398 1.858091 AATCTGACGCCGCATTCTAG 58.142 50.000 0.00 0.00 0.00 2.43
2565 3399 0.747255 ATCTGACGCCGCATTCTAGT 59.253 50.000 0.00 0.00 0.00 2.57
2566 3400 0.530744 TCTGACGCCGCATTCTAGTT 59.469 50.000 0.00 0.00 0.00 2.24
2567 3401 0.647410 CTGACGCCGCATTCTAGTTG 59.353 55.000 0.00 0.00 0.00 3.16
2568 3402 0.245266 TGACGCCGCATTCTAGTTGA 59.755 50.000 0.00 0.00 0.00 3.18
2572 3406 1.789464 CGCCGCATTCTAGTTGATCTC 59.211 52.381 0.00 0.00 0.00 2.75
2609 3482 8.543862 TCGAGGAGTTAAATTTTAGAGGAAAC 57.456 34.615 0.00 0.00 0.00 2.78
2610 3483 7.330208 TCGAGGAGTTAAATTTTAGAGGAAACG 59.670 37.037 0.00 0.00 0.00 3.60
2651 3656 3.627395 AGGACCAAAAGCATACGATCA 57.373 42.857 0.00 0.00 0.00 2.92
2662 3667 3.318275 AGCATACGATCAGTACGATGGTT 59.682 43.478 15.94 6.35 39.82 3.67
2666 3672 2.230508 ACGATCAGTACGATGGTTGTGT 59.769 45.455 8.66 0.00 39.82 3.72
2706 3719 5.630121 ACAGATGGACAGGACACATTAAAA 58.370 37.500 0.00 0.00 0.00 1.52
2707 3720 6.248433 ACAGATGGACAGGACACATTAAAAT 58.752 36.000 0.00 0.00 0.00 1.82
2708 3721 6.721208 ACAGATGGACAGGACACATTAAAATT 59.279 34.615 0.00 0.00 0.00 1.82
2747 3765 4.794648 TGCTGTATGGGCCCGCAC 62.795 66.667 19.37 17.89 0.00 5.34
2752 3770 1.152963 GTATGGGCCCGCACTGATT 60.153 57.895 19.37 0.00 0.00 2.57
2753 3771 1.152984 TATGGGCCCGCACTGATTG 60.153 57.895 19.37 0.00 0.00 2.67
2821 3839 3.115892 ATTGCACCGCCGTACGTG 61.116 61.111 15.21 6.88 41.42 4.49
2836 3854 3.759828 GTGCGTACGTGCCGTGTC 61.760 66.667 17.90 0.00 41.39 3.67
2837 3855 3.968568 TGCGTACGTGCCGTGTCT 61.969 61.111 17.90 0.00 41.39 3.41
2838 3856 3.170585 GCGTACGTGCCGTGTCTC 61.171 66.667 17.90 0.00 41.39 3.36
2839 3857 2.503375 CGTACGTGCCGTGTCTCC 60.503 66.667 7.22 0.00 41.39 3.71
2840 3858 2.503375 GTACGTGCCGTGTCTCCG 60.503 66.667 10.01 0.00 41.39 4.63
2841 3859 2.669229 TACGTGCCGTGTCTCCGA 60.669 61.111 10.01 0.00 41.39 4.55
2842 3860 2.969806 TACGTGCCGTGTCTCCGAC 61.970 63.158 10.01 0.00 41.39 4.79
2846 3864 4.477975 GCCGTGTCTCCGACCGAG 62.478 72.222 6.49 0.00 40.30 4.63
2847 3865 4.477975 CCGTGTCTCCGACCGAGC 62.478 72.222 6.49 0.00 38.62 5.03
2848 3866 3.432588 CGTGTCTCCGACCGAGCT 61.433 66.667 0.00 0.00 38.62 4.09
2849 3867 2.179517 GTGTCTCCGACCGAGCTG 59.820 66.667 0.00 0.00 38.62 4.24
2850 3868 3.062466 TGTCTCCGACCGAGCTGG 61.062 66.667 0.00 0.00 46.41 4.85
2851 3869 4.500116 GTCTCCGACCGAGCTGGC 62.500 72.222 0.00 0.00 43.94 4.85
2855 3873 4.899239 CCGACCGAGCTGGCCATC 62.899 72.222 5.51 0.31 43.94 3.51
2856 3874 4.147449 CGACCGAGCTGGCCATCA 62.147 66.667 5.51 0.00 43.94 3.07
2857 3875 2.202987 GACCGAGCTGGCCATCAG 60.203 66.667 5.51 0.00 46.03 2.90
2858 3876 3.746949 GACCGAGCTGGCCATCAGG 62.747 68.421 5.51 12.85 43.54 3.86
2868 3886 3.590824 CCATCAGGCACGGAAACC 58.409 61.111 0.00 0.00 35.38 3.27
2869 3887 1.303236 CCATCAGGCACGGAAACCA 60.303 57.895 0.00 0.00 35.38 3.67
2870 3888 1.308069 CCATCAGGCACGGAAACCAG 61.308 60.000 0.00 0.00 35.38 4.00
2871 3889 0.606401 CATCAGGCACGGAAACCAGT 60.606 55.000 0.00 0.00 35.38 4.00
2872 3890 0.110486 ATCAGGCACGGAAACCAGTT 59.890 50.000 0.00 0.00 35.38 3.16
2873 3891 0.817634 TCAGGCACGGAAACCAGTTG 60.818 55.000 0.00 0.00 0.00 3.16
2874 3892 2.193536 AGGCACGGAAACCAGTTGC 61.194 57.895 0.00 0.00 0.00 4.17
2875 3893 2.485795 GGCACGGAAACCAGTTGCA 61.486 57.895 0.00 0.00 0.00 4.08
2876 3894 1.008538 GCACGGAAACCAGTTGCAG 60.009 57.895 0.00 0.00 0.00 4.41
2877 3895 1.654220 CACGGAAACCAGTTGCAGG 59.346 57.895 0.00 0.00 0.00 4.85
2878 3896 0.817634 CACGGAAACCAGTTGCAGGA 60.818 55.000 0.00 0.00 0.00 3.86
2879 3897 0.106918 ACGGAAACCAGTTGCAGGAA 60.107 50.000 0.00 0.00 0.00 3.36
2880 3898 0.310854 CGGAAACCAGTTGCAGGAAC 59.689 55.000 0.00 0.00 34.40 3.62
2881 3899 0.673985 GGAAACCAGTTGCAGGAACC 59.326 55.000 0.31 0.00 34.80 3.62
2882 3900 0.310854 GAAACCAGTTGCAGGAACCG 59.689 55.000 0.31 0.00 34.80 4.44
2883 3901 1.734388 AAACCAGTTGCAGGAACCGC 61.734 55.000 0.31 0.00 34.80 5.68
2884 3902 2.594303 CCAGTTGCAGGAACCGCA 60.594 61.111 0.31 6.35 34.80 5.69
2885 3903 2.639286 CAGTTGCAGGAACCGCAC 59.361 61.111 0.31 6.21 39.59 5.34
2886 3904 2.972505 AGTTGCAGGAACCGCACG 60.973 61.111 0.31 0.00 39.59 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.742348 TGCATACTACTTCCTCCCGAA 58.258 47.619 0.00 0.00 0.00 4.30
1 2 2.447408 TGCATACTACTTCCTCCCGA 57.553 50.000 0.00 0.00 0.00 5.14
2 3 2.289072 CCATGCATACTACTTCCTCCCG 60.289 54.545 0.00 0.00 0.00 5.14
3 4 2.706190 ACCATGCATACTACTTCCTCCC 59.294 50.000 0.00 0.00 0.00 4.30
4 5 4.381411 GAACCATGCATACTACTTCCTCC 58.619 47.826 0.00 0.00 0.00 4.30
5 6 4.051922 CGAACCATGCATACTACTTCCTC 58.948 47.826 0.00 0.00 0.00 3.71
6 7 3.181465 CCGAACCATGCATACTACTTCCT 60.181 47.826 0.00 0.00 0.00 3.36
7 8 3.131396 CCGAACCATGCATACTACTTCC 58.869 50.000 0.00 0.00 0.00 3.46
8 9 2.544267 GCCGAACCATGCATACTACTTC 59.456 50.000 0.00 0.00 0.00 3.01
9 10 2.170607 AGCCGAACCATGCATACTACTT 59.829 45.455 0.00 0.00 0.00 2.24
10 11 1.762957 AGCCGAACCATGCATACTACT 59.237 47.619 0.00 0.00 0.00 2.57
11 12 2.240493 AGCCGAACCATGCATACTAC 57.760 50.000 0.00 0.00 0.00 2.73
12 13 2.288825 GCTAGCCGAACCATGCATACTA 60.289 50.000 2.29 0.00 0.00 1.82
13 14 1.541233 GCTAGCCGAACCATGCATACT 60.541 52.381 2.29 0.00 0.00 2.12
14 15 0.868406 GCTAGCCGAACCATGCATAC 59.132 55.000 2.29 0.00 0.00 2.39
15 16 0.758734 AGCTAGCCGAACCATGCATA 59.241 50.000 12.13 0.00 0.00 3.14
16 17 0.758734 TAGCTAGCCGAACCATGCAT 59.241 50.000 12.13 0.00 0.00 3.96
17 18 0.104855 CTAGCTAGCCGAACCATGCA 59.895 55.000 12.13 0.00 0.00 3.96
18 19 0.389391 TCTAGCTAGCCGAACCATGC 59.611 55.000 16.35 0.00 0.00 4.06
19 20 1.957177 TCTCTAGCTAGCCGAACCATG 59.043 52.381 16.35 0.00 0.00 3.66
20 21 2.158593 TCTCTCTAGCTAGCCGAACCAT 60.159 50.000 16.35 0.00 0.00 3.55
21 22 1.212195 TCTCTCTAGCTAGCCGAACCA 59.788 52.381 16.35 0.00 0.00 3.67
22 23 1.877443 CTCTCTCTAGCTAGCCGAACC 59.123 57.143 16.35 0.00 0.00 3.62
23 24 2.841215 TCTCTCTCTAGCTAGCCGAAC 58.159 52.381 16.35 0.00 0.00 3.95
24 25 3.562343 TTCTCTCTCTAGCTAGCCGAA 57.438 47.619 16.35 10.07 0.00 4.30
25 26 3.670625 GATTCTCTCTCTAGCTAGCCGA 58.329 50.000 16.35 13.05 0.00 5.54
26 27 2.415168 CGATTCTCTCTCTAGCTAGCCG 59.585 54.545 16.35 9.45 0.00 5.52
27 28 3.435671 GTCGATTCTCTCTCTAGCTAGCC 59.564 52.174 16.35 0.00 0.00 3.93
28 29 3.122948 CGTCGATTCTCTCTCTAGCTAGC 59.877 52.174 16.35 6.62 0.00 3.42
29 30 3.678072 CCGTCGATTCTCTCTCTAGCTAG 59.322 52.174 15.01 15.01 0.00 3.42
30 31 3.321396 TCCGTCGATTCTCTCTCTAGCTA 59.679 47.826 0.00 0.00 0.00 3.32
31 32 2.103432 TCCGTCGATTCTCTCTCTAGCT 59.897 50.000 0.00 0.00 0.00 3.32
32 33 2.222445 GTCCGTCGATTCTCTCTCTAGC 59.778 54.545 0.00 0.00 0.00 3.42
33 34 2.473609 CGTCCGTCGATTCTCTCTCTAG 59.526 54.545 0.00 0.00 42.86 2.43
34 35 2.471818 CGTCCGTCGATTCTCTCTCTA 58.528 52.381 0.00 0.00 42.86 2.43
35 36 1.292061 CGTCCGTCGATTCTCTCTCT 58.708 55.000 0.00 0.00 42.86 3.10
36 37 0.316360 GCGTCCGTCGATTCTCTCTC 60.316 60.000 0.00 0.00 42.86 3.20
37 38 1.025113 TGCGTCCGTCGATTCTCTCT 61.025 55.000 0.00 0.00 42.86 3.10
38 39 0.862283 GTGCGTCCGTCGATTCTCTC 60.862 60.000 0.00 0.00 42.86 3.20
39 40 1.136984 GTGCGTCCGTCGATTCTCT 59.863 57.895 0.00 0.00 42.86 3.10
40 41 0.731514 TTGTGCGTCCGTCGATTCTC 60.732 55.000 0.00 0.00 42.86 2.87
41 42 1.007336 GTTGTGCGTCCGTCGATTCT 61.007 55.000 0.00 0.00 42.86 2.40
42 43 1.414897 GTTGTGCGTCCGTCGATTC 59.585 57.895 0.00 0.00 42.86 2.52
43 44 2.369629 CGTTGTGCGTCCGTCGATT 61.370 57.895 0.00 0.00 42.86 3.34
44 45 2.803670 CGTTGTGCGTCCGTCGAT 60.804 61.111 0.00 0.00 42.86 3.59
45 46 3.951464 TCGTTGTGCGTCCGTCGA 61.951 61.111 0.00 0.00 42.86 4.20
46 47 3.749373 GTCGTTGTGCGTCCGTCG 61.749 66.667 0.00 0.00 42.13 5.12
47 48 2.656007 TGTCGTTGTGCGTCCGTC 60.656 61.111 0.00 0.00 42.13 4.79
48 49 2.958016 GTGTCGTTGTGCGTCCGT 60.958 61.111 0.00 0.00 42.13 4.69
49 50 2.410935 CTTGTGTCGTTGTGCGTCCG 62.411 60.000 0.00 0.00 42.13 4.79
50 51 1.275657 CTTGTGTCGTTGTGCGTCC 59.724 57.895 0.00 0.00 42.13 4.79
51 52 0.372334 AACTTGTGTCGTTGTGCGTC 59.628 50.000 0.00 0.00 42.13 5.19
52 53 0.096281 CAACTTGTGTCGTTGTGCGT 59.904 50.000 0.00 0.00 42.13 5.24
53 54 0.588730 CCAACTTGTGTCGTTGTGCG 60.589 55.000 0.00 0.00 39.98 5.34
54 55 0.865639 GCCAACTTGTGTCGTTGTGC 60.866 55.000 0.00 0.00 39.98 4.57
55 56 0.732571 AGCCAACTTGTGTCGTTGTG 59.267 50.000 0.00 0.00 39.98 3.33
56 57 1.400494 GAAGCCAACTTGTGTCGTTGT 59.600 47.619 0.00 0.00 39.98 3.32
57 58 1.594518 CGAAGCCAACTTGTGTCGTTG 60.595 52.381 0.00 0.00 40.98 4.10
58 59 0.655733 CGAAGCCAACTTGTGTCGTT 59.344 50.000 0.00 0.00 35.82 3.85
59 60 2.307363 CGAAGCCAACTTGTGTCGT 58.693 52.632 0.00 0.00 35.82 4.34
79 80 4.503314 GGAGCCCCCGTACGTTCG 62.503 72.222 15.21 7.68 0.00 3.95
80 81 2.569072 GAAGGAGCCCCCGTACGTTC 62.569 65.000 15.21 4.93 40.87 3.95
81 82 2.605601 AAGGAGCCCCCGTACGTT 60.606 61.111 15.21 0.00 40.87 3.99
82 83 3.073101 GAAGGAGCCCCCGTACGT 61.073 66.667 15.21 0.00 40.87 3.57
83 84 4.203076 CGAAGGAGCCCCCGTACG 62.203 72.222 8.69 8.69 40.87 3.67
132 133 3.927163 TTTCTCCCCGCGTTCGAGC 62.927 63.158 4.92 0.00 38.10 5.03
133 134 1.153628 ATTTCTCCCCGCGTTCGAG 60.154 57.895 4.92 6.68 38.10 4.04
134 135 1.447140 CATTTCTCCCCGCGTTCGA 60.447 57.895 4.92 0.00 38.10 3.71
135 136 2.461110 CCATTTCTCCCCGCGTTCG 61.461 63.158 4.92 0.00 0.00 3.95
136 137 1.078708 TCCATTTCTCCCCGCGTTC 60.079 57.895 4.92 0.00 0.00 3.95
137 138 1.078426 CTCCATTTCTCCCCGCGTT 60.078 57.895 4.92 0.00 0.00 4.84
138 139 1.550130 TTCTCCATTTCTCCCCGCGT 61.550 55.000 4.92 0.00 0.00 6.01
139 140 0.811616 CTTCTCCATTTCTCCCCGCG 60.812 60.000 0.00 0.00 0.00 6.46
140 141 0.541863 TCTTCTCCATTTCTCCCCGC 59.458 55.000 0.00 0.00 0.00 6.13
141 142 3.471680 GATTCTTCTCCATTTCTCCCCG 58.528 50.000 0.00 0.00 0.00 5.73
142 143 3.118223 ACGATTCTTCTCCATTTCTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
143 144 3.873952 CACGATTCTTCTCCATTTCTCCC 59.126 47.826 0.00 0.00 0.00 4.30
144 145 3.311048 GCACGATTCTTCTCCATTTCTCC 59.689 47.826 0.00 0.00 0.00 3.71
145 146 3.935203 TGCACGATTCTTCTCCATTTCTC 59.065 43.478 0.00 0.00 0.00 2.87
146 147 3.937706 CTGCACGATTCTTCTCCATTTCT 59.062 43.478 0.00 0.00 0.00 2.52
147 148 3.935203 TCTGCACGATTCTTCTCCATTTC 59.065 43.478 0.00 0.00 0.00 2.17
148 149 3.942829 TCTGCACGATTCTTCTCCATTT 58.057 40.909 0.00 0.00 0.00 2.32
149 150 3.616956 TCTGCACGATTCTTCTCCATT 57.383 42.857 0.00 0.00 0.00 3.16
150 151 3.834489 ATCTGCACGATTCTTCTCCAT 57.166 42.857 0.00 0.00 0.00 3.41
151 152 3.616956 AATCTGCACGATTCTTCTCCA 57.383 42.857 5.80 0.00 37.85 3.86
159 160 3.097877 TCATAGCGAATCTGCACGATT 57.902 42.857 10.07 10.07 44.87 3.34
160 161 2.800881 TCATAGCGAATCTGCACGAT 57.199 45.000 0.00 0.00 37.31 3.73
161 162 2.463876 CTTCATAGCGAATCTGCACGA 58.536 47.619 0.00 0.00 37.31 4.35
162 163 1.524355 CCTTCATAGCGAATCTGCACG 59.476 52.381 0.00 0.00 37.31 5.34
163 164 1.262683 GCCTTCATAGCGAATCTGCAC 59.737 52.381 0.00 0.00 37.31 4.57
164 165 1.134431 TGCCTTCATAGCGAATCTGCA 60.134 47.619 0.00 0.00 37.31 4.41
165 166 1.530293 CTGCCTTCATAGCGAATCTGC 59.470 52.381 0.00 0.00 31.69 4.26
166 167 2.543012 CACTGCCTTCATAGCGAATCTG 59.457 50.000 0.00 0.00 31.69 2.90
167 168 2.169352 ACACTGCCTTCATAGCGAATCT 59.831 45.455 0.00 0.00 31.69 2.40
168 169 2.555199 ACACTGCCTTCATAGCGAATC 58.445 47.619 0.00 0.00 31.69 2.52
169 170 2.679837 CAACACTGCCTTCATAGCGAAT 59.320 45.455 0.00 0.00 31.69 3.34
170 171 2.076100 CAACACTGCCTTCATAGCGAA 58.924 47.619 0.00 0.00 0.00 4.70
171 172 1.001974 ACAACACTGCCTTCATAGCGA 59.998 47.619 0.00 0.00 0.00 4.93
172 173 1.442769 ACAACACTGCCTTCATAGCG 58.557 50.000 0.00 0.00 0.00 4.26
173 174 3.253188 TGAAACAACACTGCCTTCATAGC 59.747 43.478 0.00 0.00 0.00 2.97
174 175 4.614535 GCTGAAACAACACTGCCTTCATAG 60.615 45.833 0.00 0.00 31.03 2.23
175 176 3.253188 GCTGAAACAACACTGCCTTCATA 59.747 43.478 0.00 0.00 31.03 2.15
176 177 2.035066 GCTGAAACAACACTGCCTTCAT 59.965 45.455 0.00 0.00 31.03 2.57
177 178 1.405105 GCTGAAACAACACTGCCTTCA 59.595 47.619 0.00 0.00 0.00 3.02
178 179 1.597937 CGCTGAAACAACACTGCCTTC 60.598 52.381 0.00 0.00 0.00 3.46
179 180 0.381801 CGCTGAAACAACACTGCCTT 59.618 50.000 0.00 0.00 0.00 4.35
180 181 2.024918 CGCTGAAACAACACTGCCT 58.975 52.632 0.00 0.00 0.00 4.75
181 182 1.658409 GCGCTGAAACAACACTGCC 60.658 57.895 0.00 0.00 0.00 4.85
182 183 2.005537 CGCGCTGAAACAACACTGC 61.006 57.895 5.56 0.00 0.00 4.40
183 184 0.654472 GACGCGCTGAAACAACACTG 60.654 55.000 5.73 0.00 0.00 3.66
184 185 1.641677 GACGCGCTGAAACAACACT 59.358 52.632 5.73 0.00 0.00 3.55
185 186 1.717728 CGACGCGCTGAAACAACAC 60.718 57.895 5.73 0.00 0.00 3.32
186 187 2.623718 CGACGCGCTGAAACAACA 59.376 55.556 5.73 0.00 0.00 3.33
187 188 2.127758 CCGACGCGCTGAAACAAC 60.128 61.111 5.73 0.00 0.00 3.32
188 189 3.342627 CCCGACGCGCTGAAACAA 61.343 61.111 5.73 0.00 0.00 2.83
189 190 4.595538 ACCCGACGCGCTGAAACA 62.596 61.111 5.73 0.00 0.00 2.83
190 191 3.291167 GAACCCGACGCGCTGAAAC 62.291 63.158 5.73 0.00 0.00 2.78
191 192 3.039588 GAACCCGACGCGCTGAAA 61.040 61.111 5.73 0.00 0.00 2.69
194 195 4.764336 TACGAACCCGACGCGCTG 62.764 66.667 5.73 1.02 39.50 5.18
195 196 4.471726 CTACGAACCCGACGCGCT 62.472 66.667 5.73 0.00 39.50 5.92
202 203 2.202703 CTTCCGGCTACGAACCCG 60.203 66.667 0.00 0.00 44.60 5.28
203 204 1.141234 CTCTTCCGGCTACGAACCC 59.859 63.158 0.00 0.00 44.60 4.11
204 205 1.141234 CCTCTTCCGGCTACGAACC 59.859 63.158 0.00 0.00 44.60 3.62
205 206 0.529378 TTCCTCTTCCGGCTACGAAC 59.471 55.000 0.00 0.00 44.60 3.95
206 207 1.259609 TTTCCTCTTCCGGCTACGAA 58.740 50.000 0.00 0.00 44.60 3.85
207 208 1.136305 CATTTCCTCTTCCGGCTACGA 59.864 52.381 0.00 0.00 44.60 3.43
208 209 1.571919 CATTTCCTCTTCCGGCTACG 58.428 55.000 0.00 0.00 40.55 3.51
209 210 1.954927 CCATTTCCTCTTCCGGCTAC 58.045 55.000 0.00 0.00 0.00 3.58
210 211 0.180406 GCCATTTCCTCTTCCGGCTA 59.820 55.000 0.00 0.00 36.58 3.93
211 212 1.077429 GCCATTTCCTCTTCCGGCT 60.077 57.895 0.00 0.00 36.58 5.52
212 213 2.121538 GGCCATTTCCTCTTCCGGC 61.122 63.158 0.00 0.00 38.85 6.13
213 214 1.453928 GGGCCATTTCCTCTTCCGG 60.454 63.158 4.39 0.00 0.00 5.14
214 215 1.819632 CGGGCCATTTCCTCTTCCG 60.820 63.158 4.39 0.00 0.00 4.30
215 216 1.032114 CACGGGCCATTTCCTCTTCC 61.032 60.000 4.39 0.00 0.00 3.46
216 217 1.657751 GCACGGGCCATTTCCTCTTC 61.658 60.000 4.39 0.00 0.00 2.87
217 218 1.678970 GCACGGGCCATTTCCTCTT 60.679 57.895 4.39 0.00 0.00 2.85
218 219 2.044946 GCACGGGCCATTTCCTCT 60.045 61.111 4.39 0.00 0.00 3.69
232 233 1.264288 GCACATTATTAGCTCCGGCAC 59.736 52.381 0.00 0.00 41.70 5.01
233 234 1.134250 TGCACATTATTAGCTCCGGCA 60.134 47.619 0.00 0.00 41.70 5.69
234 235 1.532868 CTGCACATTATTAGCTCCGGC 59.467 52.381 0.00 0.00 39.06 6.13
235 236 2.545526 CACTGCACATTATTAGCTCCGG 59.454 50.000 0.00 0.00 0.00 5.14
236 237 3.198068 ACACTGCACATTATTAGCTCCG 58.802 45.455 0.00 0.00 0.00 4.63
237 238 4.209288 CGTACACTGCACATTATTAGCTCC 59.791 45.833 0.00 0.00 0.00 4.70
238 239 4.804139 ACGTACACTGCACATTATTAGCTC 59.196 41.667 0.00 0.00 0.00 4.09
239 240 4.566759 CACGTACACTGCACATTATTAGCT 59.433 41.667 0.00 0.00 0.00 3.32
240 241 4.260212 CCACGTACACTGCACATTATTAGC 60.260 45.833 0.00 0.00 0.00 3.09
241 242 4.260212 GCCACGTACACTGCACATTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
242 243 3.619483 GCCACGTACACTGCACATTATTA 59.381 43.478 0.00 0.00 0.00 0.98
243 244 2.418628 GCCACGTACACTGCACATTATT 59.581 45.455 0.00 0.00 0.00 1.40
244 245 2.006888 GCCACGTACACTGCACATTAT 58.993 47.619 0.00 0.00 0.00 1.28
245 246 1.434555 GCCACGTACACTGCACATTA 58.565 50.000 0.00 0.00 0.00 1.90
246 247 1.565156 CGCCACGTACACTGCACATT 61.565 55.000 0.00 0.00 0.00 2.71
247 248 2.027073 CGCCACGTACACTGCACAT 61.027 57.895 0.00 0.00 0.00 3.21
248 249 2.660224 CGCCACGTACACTGCACA 60.660 61.111 0.00 0.00 0.00 4.57
249 250 4.072088 GCGCCACGTACACTGCAC 62.072 66.667 0.00 0.00 0.00 4.57
252 253 2.809601 GAGGCGCCACGTACACTG 60.810 66.667 31.54 0.00 0.00 3.66
253 254 4.415332 CGAGGCGCCACGTACACT 62.415 66.667 33.92 9.40 0.00 3.55
264 265 2.434185 TGCACTTTAGGCGAGGCG 60.434 61.111 0.00 0.00 0.00 5.52
265 266 2.740714 CGTGCACTTTAGGCGAGGC 61.741 63.158 16.19 0.00 0.00 4.70
266 267 2.740714 GCGTGCACTTTAGGCGAGG 61.741 63.158 16.19 0.00 0.00 4.63
267 268 2.778679 GCGTGCACTTTAGGCGAG 59.221 61.111 16.19 0.00 0.00 5.03
270 271 4.794241 CGCGCGTGCACTTTAGGC 62.794 66.667 24.19 9.45 42.97 3.93
271 272 4.147322 CCGCGCGTGCACTTTAGG 62.147 66.667 29.95 8.90 42.97 2.69
272 273 4.147322 CCCGCGCGTGCACTTTAG 62.147 66.667 29.95 9.60 42.97 1.85
273 274 4.973055 ACCCGCGCGTGCACTTTA 62.973 61.111 29.95 0.00 42.97 1.85
285 286 0.816421 ACATATACCGCCAAACCCGC 60.816 55.000 0.00 0.00 0.00 6.13
286 287 1.332375 CAACATATACCGCCAAACCCG 59.668 52.381 0.00 0.00 0.00 5.28
287 288 2.098443 CACAACATATACCGCCAAACCC 59.902 50.000 0.00 0.00 0.00 4.11
288 289 2.098443 CCACAACATATACCGCCAAACC 59.902 50.000 0.00 0.00 0.00 3.27
289 290 2.750712 ACCACAACATATACCGCCAAAC 59.249 45.455 0.00 0.00 0.00 2.93
290 291 2.750166 CACCACAACATATACCGCCAAA 59.250 45.455 0.00 0.00 0.00 3.28
291 292 2.027100 TCACCACAACATATACCGCCAA 60.027 45.455 0.00 0.00 0.00 4.52
292 293 1.555533 TCACCACAACATATACCGCCA 59.444 47.619 0.00 0.00 0.00 5.69
293 294 2.319136 TCACCACAACATATACCGCC 57.681 50.000 0.00 0.00 0.00 6.13
294 295 3.936453 TCTTTCACCACAACATATACCGC 59.064 43.478 0.00 0.00 0.00 5.68
295 296 5.642063 ACTTCTTTCACCACAACATATACCG 59.358 40.000 0.00 0.00 0.00 4.02
296 297 6.653320 TCACTTCTTTCACCACAACATATACC 59.347 38.462 0.00 0.00 0.00 2.73
297 298 7.667043 TCACTTCTTTCACCACAACATATAC 57.333 36.000 0.00 0.00 0.00 1.47
298 299 7.148255 GCATCACTTCTTTCACCACAACATATA 60.148 37.037 0.00 0.00 0.00 0.86
299 300 6.349611 GCATCACTTCTTTCACCACAACATAT 60.350 38.462 0.00 0.00 0.00 1.78
300 301 5.048782 GCATCACTTCTTTCACCACAACATA 60.049 40.000 0.00 0.00 0.00 2.29
301 302 4.261741 GCATCACTTCTTTCACCACAACAT 60.262 41.667 0.00 0.00 0.00 2.71
302 303 3.066621 GCATCACTTCTTTCACCACAACA 59.933 43.478 0.00 0.00 0.00 3.33
303 304 3.066621 TGCATCACTTCTTTCACCACAAC 59.933 43.478 0.00 0.00 0.00 3.32
304 305 3.066621 GTGCATCACTTCTTTCACCACAA 59.933 43.478 0.00 0.00 0.00 3.33
305 306 2.618241 GTGCATCACTTCTTTCACCACA 59.382 45.455 0.00 0.00 0.00 4.17
306 307 2.349817 CGTGCATCACTTCTTTCACCAC 60.350 50.000 0.00 0.00 31.34 4.16
307 308 1.872952 CGTGCATCACTTCTTTCACCA 59.127 47.619 0.00 0.00 31.34 4.17
308 309 1.873591 ACGTGCATCACTTCTTTCACC 59.126 47.619 0.00 0.00 31.34 4.02
309 310 2.908634 CACGTGCATCACTTCTTTCAC 58.091 47.619 0.82 0.00 31.34 3.18
310 311 1.264020 GCACGTGCATCACTTCTTTCA 59.736 47.619 34.52 0.00 41.59 2.69
330 331 2.957491 TGACTGTTTTGGCTTTGTGG 57.043 45.000 0.00 0.00 0.00 4.17
439 441 2.684630 CGGTTGGTTAATTAGGGTCCCC 60.685 54.545 3.51 0.00 0.00 4.81
443 445 5.713760 TTATCCGGTTGGTTAATTAGGGT 57.286 39.130 0.00 0.00 36.30 4.34
481 484 1.194098 GCGATGGAAATGCTCAGATCG 59.806 52.381 0.00 0.00 39.35 3.69
517 520 1.200020 GGGTTCCTTTCTGCGAATGTG 59.800 52.381 0.00 0.00 0.00 3.21
557 560 3.345808 GTTTCTGCCTCGTGCGCA 61.346 61.111 5.66 5.66 45.60 6.09
560 563 1.956620 GCTACGTTTCTGCCTCGTGC 61.957 60.000 0.00 0.00 38.27 5.34
589 593 0.247695 GCCGAAGCTGCGTGATTAAC 60.248 55.000 14.34 0.00 35.50 2.01
645 650 4.792804 GCCTCTGGCTGGCTGGAC 62.793 72.222 8.19 0.00 46.69 4.02
661 666 2.440980 GATGGACTGGGCAAGGGC 60.441 66.667 0.00 0.00 40.13 5.19
662 667 1.379044 GTGATGGACTGGGCAAGGG 60.379 63.158 0.00 0.00 0.00 3.95
663 668 0.679002 CTGTGATGGACTGGGCAAGG 60.679 60.000 0.00 0.00 0.00 3.61
664 669 1.310933 GCTGTGATGGACTGGGCAAG 61.311 60.000 0.00 0.00 0.00 4.01
665 670 1.303561 GCTGTGATGGACTGGGCAA 60.304 57.895 0.00 0.00 0.00 4.52
666 671 2.352422 GCTGTGATGGACTGGGCA 59.648 61.111 0.00 0.00 0.00 5.36
667 672 2.439156 GGCTGTGATGGACTGGGC 60.439 66.667 0.00 0.00 0.00 5.36
668 673 1.222936 GAGGCTGTGATGGACTGGG 59.777 63.158 0.00 0.00 0.00 4.45
669 674 0.177604 GAGAGGCTGTGATGGACTGG 59.822 60.000 0.00 0.00 0.00 4.00
674 679 1.813513 AAAACGAGAGGCTGTGATGG 58.186 50.000 0.00 0.00 0.00 3.51
781 820 4.547367 GGGGAAGGTGGCGGATCG 62.547 72.222 0.00 0.00 0.00 3.69
958 1023 2.408241 GGAGGTGGAGACGAGACGG 61.408 68.421 0.00 0.00 0.00 4.79
985 1050 3.179830 GTTATATAGATGGACGCGGCAG 58.820 50.000 17.00 0.00 0.00 4.85
988 1053 3.168963 CGTGTTATATAGATGGACGCGG 58.831 50.000 12.47 0.00 39.67 6.46
1054 1122 2.698020 GCGTTCGCTAAGCTCTGC 59.302 61.111 9.99 0.00 0.00 4.26
1055 1123 0.807667 ATGGCGTTCGCTAAGCTCTG 60.808 55.000 16.40 0.00 0.00 3.35
1058 1126 0.391130 TCAATGGCGTTCGCTAAGCT 60.391 50.000 16.40 0.00 0.00 3.74
1069 1137 3.940640 CGGTGGCGATCAATGGCG 61.941 66.667 0.00 0.00 31.82 5.69
1090 1158 0.179029 GAGACGAGAGAGAGGGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
1100 1168 4.244802 GCCGAGCCGAGACGAGAG 62.245 72.222 0.00 0.00 0.00 3.20
1341 1415 1.067821 CCCGTAGAAGATGGTCAGCTC 59.932 57.143 0.00 0.00 31.33 4.09
1614 1706 2.176792 CTTCTTCTTTGGCGGCGC 59.823 61.111 26.17 26.17 0.00 6.53
1622 1720 1.420138 TCCGTCTTGCCCTTCTTCTTT 59.580 47.619 0.00 0.00 0.00 2.52
1643 1741 2.346541 GGCAAGCCAGGAAGAAGCC 61.347 63.158 6.14 0.00 35.81 4.35
1658 1756 1.692749 CCCTAAGCTACCCAGGGCA 60.693 63.158 4.91 0.00 42.59 5.36
1696 1798 1.237285 GCCGTGCATGTTGAGAGGTT 61.237 55.000 4.96 0.00 0.00 3.50
1697 1799 1.672356 GCCGTGCATGTTGAGAGGT 60.672 57.895 4.96 0.00 0.00 3.85
1699 1801 0.110056 GTTGCCGTGCATGTTGAGAG 60.110 55.000 4.96 0.00 38.76 3.20
1700 1802 0.817229 TGTTGCCGTGCATGTTGAGA 60.817 50.000 4.96 0.00 38.76 3.27
1719 1821 3.132824 TGATCACAGCTCGATGTACCAAT 59.867 43.478 0.00 0.00 0.00 3.16
1743 1846 1.627864 AGGGTTGTTTCAATTCCCCG 58.372 50.000 0.00 0.00 38.97 5.73
1744 1847 2.549992 GCAAGGGTTGTTTCAATTCCCC 60.550 50.000 0.00 0.00 38.97 4.81
1755 1858 3.625745 CTACGGAAGCAAGGGTTGT 57.374 52.632 0.00 0.00 0.00 3.32
1787 1893 9.959749 GATGTACTTACTACTACTACTAGACGT 57.040 37.037 0.00 0.00 0.00 4.34
1788 1894 9.958234 TGATGTACTTACTACTACTACTAGACG 57.042 37.037 0.00 0.00 0.00 4.18
1796 1902 9.804758 GCTTGAATTGATGTACTTACTACTACT 57.195 33.333 0.00 0.00 0.00 2.57
1797 1903 9.032420 GGCTTGAATTGATGTACTTACTACTAC 57.968 37.037 0.00 0.00 0.00 2.73
1798 1904 8.755028 TGGCTTGAATTGATGTACTTACTACTA 58.245 33.333 0.00 0.00 0.00 1.82
1799 1905 7.549488 GTGGCTTGAATTGATGTACTTACTACT 59.451 37.037 0.00 0.00 0.00 2.57
1800 1906 7.333423 TGTGGCTTGAATTGATGTACTTACTAC 59.667 37.037 0.00 0.00 0.00 2.73
1801 1907 7.390823 TGTGGCTTGAATTGATGTACTTACTA 58.609 34.615 0.00 0.00 0.00 1.82
1802 1908 6.237901 TGTGGCTTGAATTGATGTACTTACT 58.762 36.000 0.00 0.00 0.00 2.24
1803 1909 6.494893 TGTGGCTTGAATTGATGTACTTAC 57.505 37.500 0.00 0.00 0.00 2.34
1804 1910 6.658816 ACATGTGGCTTGAATTGATGTACTTA 59.341 34.615 0.00 0.00 0.00 2.24
1805 1911 5.477984 ACATGTGGCTTGAATTGATGTACTT 59.522 36.000 0.00 0.00 0.00 2.24
1806 1912 5.012239 ACATGTGGCTTGAATTGATGTACT 58.988 37.500 0.00 0.00 0.00 2.73
1807 1913 5.314923 ACATGTGGCTTGAATTGATGTAC 57.685 39.130 0.00 0.00 0.00 2.90
1808 1914 4.094739 CGACATGTGGCTTGAATTGATGTA 59.905 41.667 1.15 0.00 0.00 2.29
1809 1915 3.119743 CGACATGTGGCTTGAATTGATGT 60.120 43.478 1.15 0.00 0.00 3.06
1810 1916 3.119743 ACGACATGTGGCTTGAATTGATG 60.120 43.478 1.15 0.00 0.00 3.07
1873 1980 6.598850 GCATGGGTTAAATTTTGATGGAATGT 59.401 34.615 0.00 0.00 0.00 2.71
1874 1981 6.598457 TGCATGGGTTAAATTTTGATGGAATG 59.402 34.615 0.00 0.00 0.00 2.67
1876 1983 5.936956 GTGCATGGGTTAAATTTTGATGGAA 59.063 36.000 0.00 0.00 0.00 3.53
1877 1984 5.248020 AGTGCATGGGTTAAATTTTGATGGA 59.752 36.000 0.00 0.00 0.00 3.41
1879 1986 7.765360 ACATAGTGCATGGGTTAAATTTTGATG 59.235 33.333 0.00 0.00 39.13 3.07
1880 1987 7.850193 ACATAGTGCATGGGTTAAATTTTGAT 58.150 30.769 0.00 0.00 39.13 2.57
1881 1988 7.238486 ACATAGTGCATGGGTTAAATTTTGA 57.762 32.000 0.00 0.00 39.13 2.69
1882 1989 7.903995 AACATAGTGCATGGGTTAAATTTTG 57.096 32.000 0.00 0.00 39.13 2.44
1883 1990 8.374743 AGAAACATAGTGCATGGGTTAAATTTT 58.625 29.630 0.00 0.00 39.13 1.82
1884 1991 7.906327 AGAAACATAGTGCATGGGTTAAATTT 58.094 30.769 0.00 0.00 39.13 1.82
1885 1992 7.480760 AGAAACATAGTGCATGGGTTAAATT 57.519 32.000 0.00 0.00 39.13 1.82
1966 2077 8.635877 ATTTAAAATAAATAAACGGCGCATCA 57.364 26.923 10.83 0.00 0.00 3.07
2035 2156 3.379445 GTTCTGCCGACGGAGGGA 61.379 66.667 20.50 8.92 31.21 4.20
2036 2157 4.796231 CGTTCTGCCGACGGAGGG 62.796 72.222 20.50 6.45 36.90 4.30
2037 2158 3.569049 AACGTTCTGCCGACGGAGG 62.569 63.158 20.50 9.20 44.34 4.30
2038 2159 1.219522 AAAACGTTCTGCCGACGGAG 61.220 55.000 20.50 12.32 44.34 4.63
2039 2160 0.810823 AAAAACGTTCTGCCGACGGA 60.811 50.000 20.50 1.60 44.34 4.69
2040 2161 1.644913 AAAAACGTTCTGCCGACGG 59.355 52.632 10.29 10.29 44.34 4.79
2077 2198 9.044150 CCGTCCCATAATATAAGAACGTTTTTA 57.956 33.333 13.02 13.02 0.00 1.52
2078 2199 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2079 2200 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2080 2201 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2081 2202 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2082 2203 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2083 2204 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2084 2205 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2085 2206 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2086 2207 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2087 2208 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2088 2209 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2089 2210 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2090 2211 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2091 2212 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
2092 2213 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2093 2214 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2094 2215 3.140707 TGTAATACTCCCTCCGTCCCATA 59.859 47.826 0.00 0.00 0.00 2.74
2095 2216 2.090943 TGTAATACTCCCTCCGTCCCAT 60.091 50.000 0.00 0.00 0.00 4.00
2096 2217 1.288633 TGTAATACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
2097 2218 2.077687 TGTAATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
2098 2219 4.780275 GTATGTAATACTCCCTCCGTCC 57.220 50.000 0.00 0.00 46.23 4.79
2132 2256 9.638239 ACAAATTTGTACGAATAATGCAATTCT 57.362 25.926 22.10 0.00 40.16 2.40
2201 2352 7.838771 TCTAGATGTGACATGAAGTTCATTG 57.161 36.000 15.85 13.20 34.28 2.82
2265 2422 5.253330 AGTTCCATACATAACAGGGTTGTG 58.747 41.667 4.59 4.59 37.67 3.33
2266 2423 5.514500 AGTTCCATACATAACAGGGTTGT 57.486 39.130 0.00 0.00 39.87 3.32
2267 2424 6.411376 TGTAGTTCCATACATAACAGGGTTG 58.589 40.000 0.00 0.00 30.76 3.77
2345 2504 7.769272 TGAATTTTGTTTGGAGAATTGTCAC 57.231 32.000 4.83 0.00 0.00 3.67
2388 2547 6.548622 AGGAAATTGTCATCCTCATGTTATGG 59.451 38.462 0.00 0.00 42.44 2.74
2389 2548 7.578310 AGGAAATTGTCATCCTCATGTTATG 57.422 36.000 0.00 0.00 42.44 1.90
2390 2549 8.599624 AAAGGAAATTGTCATCCTCATGTTAT 57.400 30.769 0.00 0.00 45.33 1.89
2391 2550 9.177608 CTAAAGGAAATTGTCATCCTCATGTTA 57.822 33.333 0.00 0.00 45.33 2.41
2392 2551 6.923199 AAAGGAAATTGTCATCCTCATGTT 57.077 33.333 0.00 0.00 45.33 2.71
2393 2552 6.096001 GCTAAAGGAAATTGTCATCCTCATGT 59.904 38.462 0.00 0.00 45.33 3.21
2394 2553 6.095860 TGCTAAAGGAAATTGTCATCCTCATG 59.904 38.462 0.00 0.00 45.33 3.07
2405 3237 5.389725 CGCCATTGTTTGCTAAAGGAAATTG 60.390 40.000 0.00 0.33 37.67 2.32
2429 3261 5.904362 AAAACTGAACATAGCAAGGATCC 57.096 39.130 2.48 2.48 0.00 3.36
2465 3298 2.748461 TTTCTTTGACAAACTCGGCG 57.252 45.000 0.00 0.00 0.00 6.46
2472 3305 6.917477 CGAGGATGACAATTTTCTTTGACAAA 59.083 34.615 0.00 0.00 35.51 2.83
2477 3310 5.156355 CCACGAGGATGACAATTTTCTTTG 58.844 41.667 0.00 0.00 36.89 2.77
2488 3321 1.933853 GTATGTTGCCACGAGGATGAC 59.066 52.381 1.86 0.00 36.89 3.06
2508 3342 7.953710 GCAAAGCAAATGTTTCTTATAGCAAAG 59.046 33.333 0.00 0.00 0.00 2.77
2524 3358 2.810439 TTAAGCACGGCAAAGCAAAT 57.190 40.000 0.00 0.00 0.00 2.32
2529 3363 4.382754 GTCAGATTTTTAAGCACGGCAAAG 59.617 41.667 0.00 0.00 0.00 2.77
2536 3370 2.505866 CGGCGTCAGATTTTTAAGCAC 58.494 47.619 0.00 0.00 0.00 4.40
2547 3381 0.530744 AACTAGAATGCGGCGTCAGA 59.469 50.000 9.37 0.00 0.00 3.27
2552 3386 1.789464 GAGATCAACTAGAATGCGGCG 59.211 52.381 0.51 0.51 0.00 6.46
2555 3389 5.218885 CACCTAGAGATCAACTAGAATGCG 58.781 45.833 20.89 11.00 39.48 4.73
2557 3391 6.322456 TCACCACCTAGAGATCAACTAGAATG 59.678 42.308 20.89 17.95 39.48 2.67
2561 3395 6.514212 CGAATCACCACCTAGAGATCAACTAG 60.514 46.154 15.51 15.51 37.61 2.57
2563 3397 4.098654 CGAATCACCACCTAGAGATCAACT 59.901 45.833 0.00 0.00 0.00 3.16
2564 3398 4.098044 TCGAATCACCACCTAGAGATCAAC 59.902 45.833 0.00 0.00 0.00 3.18
2565 3399 4.278310 TCGAATCACCACCTAGAGATCAA 58.722 43.478 0.00 0.00 0.00 2.57
2566 3400 3.885901 CTCGAATCACCACCTAGAGATCA 59.114 47.826 0.00 0.00 0.00 2.92
2567 3401 3.254657 CCTCGAATCACCACCTAGAGATC 59.745 52.174 0.00 0.00 0.00 2.75
2568 3402 3.117474 TCCTCGAATCACCACCTAGAGAT 60.117 47.826 0.00 0.00 0.00 2.75
2572 3406 2.379972 ACTCCTCGAATCACCACCTAG 58.620 52.381 0.00 0.00 0.00 3.02
2627 3632 4.274602 TCGTATGCTTTTGGTCCTAACA 57.725 40.909 0.00 0.00 0.00 2.41
2628 3633 4.873827 TGATCGTATGCTTTTGGTCCTAAC 59.126 41.667 0.00 0.00 0.00 2.34
2651 3656 5.992829 TGTTAAATCACACAACCATCGTACT 59.007 36.000 0.00 0.00 0.00 2.73
2666 3672 5.407084 CCATCTGTACGTGTGTGTTAAATCA 59.593 40.000 0.00 0.00 0.00 2.57
2706 3719 2.950309 CCGACCGATATCGATCCCTAAT 59.050 50.000 26.32 1.28 45.13 1.73
2707 3720 2.290514 ACCGACCGATATCGATCCCTAA 60.291 50.000 26.32 0.00 45.13 2.69
2708 3721 1.280133 ACCGACCGATATCGATCCCTA 59.720 52.381 26.32 0.00 45.13 3.53
2728 3741 2.753849 GCGGGCCCATACAGCAAA 60.754 61.111 24.92 0.00 0.00 3.68
2747 3765 0.109735 CTGCACTGCACTGCAATCAG 60.110 55.000 19.50 8.46 46.46 2.90
2802 3820 4.514569 CGTACGGCGGTGCAATGC 62.515 66.667 13.24 0.00 36.85 3.56
2838 3856 4.899239 GATGGCCAGCTCGGTCGG 62.899 72.222 15.35 0.00 45.31 4.79
2839 3857 4.147449 TGATGGCCAGCTCGGTCG 62.147 66.667 23.69 0.00 45.31 4.79
2840 3858 2.202987 CTGATGGCCAGCTCGGTC 60.203 66.667 23.69 8.82 41.21 4.79
2841 3859 3.790437 CCTGATGGCCAGCTCGGT 61.790 66.667 23.69 0.00 41.57 4.69
2851 3869 1.303236 TGGTTTCCGTGCCTGATGG 60.303 57.895 0.00 0.00 0.00 3.51
2852 3870 0.606401 ACTGGTTTCCGTGCCTGATG 60.606 55.000 0.00 0.00 0.00 3.07
2853 3871 0.110486 AACTGGTTTCCGTGCCTGAT 59.890 50.000 0.00 0.00 0.00 2.90
2854 3872 0.817634 CAACTGGTTTCCGTGCCTGA 60.818 55.000 0.00 0.00 0.00 3.86
2855 3873 1.654220 CAACTGGTTTCCGTGCCTG 59.346 57.895 0.00 0.00 0.00 4.85
2856 3874 2.193536 GCAACTGGTTTCCGTGCCT 61.194 57.895 0.00 0.00 0.00 4.75
2857 3875 2.335011 GCAACTGGTTTCCGTGCC 59.665 61.111 0.00 0.00 0.00 5.01
2858 3876 1.008538 CTGCAACTGGTTTCCGTGC 60.009 57.895 0.00 0.00 0.00 5.34
2859 3877 0.817634 TCCTGCAACTGGTTTCCGTG 60.818 55.000 0.00 0.00 0.00 4.94
2860 3878 0.106918 TTCCTGCAACTGGTTTCCGT 60.107 50.000 0.00 0.00 0.00 4.69
2861 3879 0.310854 GTTCCTGCAACTGGTTTCCG 59.689 55.000 0.00 0.00 31.50 4.30
2862 3880 0.673985 GGTTCCTGCAACTGGTTTCC 59.326 55.000 0.00 0.00 35.06 3.13
2863 3881 0.310854 CGGTTCCTGCAACTGGTTTC 59.689 55.000 0.00 0.00 37.68 2.78
2864 3882 1.734388 GCGGTTCCTGCAACTGGTTT 61.734 55.000 0.00 0.00 41.26 3.27
2865 3883 2.193536 GCGGTTCCTGCAACTGGTT 61.194 57.895 0.00 0.00 41.26 3.67
2866 3884 2.594592 GCGGTTCCTGCAACTGGT 60.595 61.111 0.00 0.00 41.26 4.00
2867 3885 2.594303 TGCGGTTCCTGCAACTGG 60.594 61.111 0.00 0.00 41.26 4.00
2868 3886 2.639286 GTGCGGTTCCTGCAACTG 59.361 61.111 0.00 0.00 45.23 3.16
2869 3887 2.972505 CGTGCGGTTCCTGCAACT 60.973 61.111 0.00 0.00 45.23 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.