Multiple sequence alignment - TraesCS4A01G007600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G007600 chr4A 100.000 5321 0 0 1 5321 4816931 4822251 0.000000e+00 9827.0
1 TraesCS4A01G007600 chr4A 96.019 1507 53 5 1780 3280 684920193 684918688 0.000000e+00 2444.0
2 TraesCS4A01G007600 chr4A 93.820 1521 83 8 1766 3280 640993923 640995438 0.000000e+00 2278.0
3 TraesCS4A01G007600 chr4A 91.358 243 17 4 5078 5318 679973317 679973557 3.970000e-86 329.0
4 TraesCS4A01G007600 chr4A 95.930 172 7 0 3280 3451 684918655 684918484 4.060000e-71 279.0
5 TraesCS4A01G007600 chr4A 96.552 58 2 0 4756 4813 679973060 679973117 4.390000e-16 97.1
6 TraesCS4A01G007600 chr3A 92.749 1710 98 19 1757 3446 702934327 702936030 0.000000e+00 2447.0
7 TraesCS4A01G007600 chr3A 95.745 47 2 0 3217 3263 626070799 626070845 5.710000e-10 76.8
8 TraesCS4A01G007600 chr6A 95.770 1513 56 6 1774 3280 577871264 577872774 0.000000e+00 2433.0
9 TraesCS4A01G007600 chr6A 97.647 170 4 0 3277 3446 577872804 577872973 5.210000e-75 292.0
10 TraesCS4A01G007600 chr6A 93.064 173 12 0 3280 3452 499655671 499655499 2.460000e-63 254.0
11 TraesCS4A01G007600 chr2A 95.043 1513 64 6 1774 3280 161823191 161824698 0.000000e+00 2368.0
12 TraesCS4A01G007600 chr2A 94.706 170 8 1 3277 3446 161824728 161824896 4.090000e-66 263.0
13 TraesCS4A01G007600 chr5A 94.280 1556 60 16 1744 3280 596577111 596575566 0.000000e+00 2353.0
14 TraesCS4A01G007600 chr5A 93.075 1603 94 12 1765 3355 467052944 467054541 0.000000e+00 2329.0
15 TraesCS4A01G007600 chr5A 95.294 170 8 0 3277 3446 374919947 374920116 2.440000e-68 270.0
16 TraesCS4A01G007600 chr5A 91.954 174 9 3 3280 3452 206732287 206732118 6.890000e-59 239.0
17 TraesCS4A01G007600 chr1A 94.250 1513 75 6 1774 3280 510311802 510310296 0.000000e+00 2302.0
18 TraesCS4A01G007600 chr1A 87.119 295 33 4 1153 1442 259049416 259049710 3.970000e-86 329.0
19 TraesCS4A01G007600 chr1A 95.349 172 7 1 3280 3451 549759033 549758863 6.790000e-69 272.0
20 TraesCS4A01G007600 chr1A 93.642 173 11 0 3280 3452 510310263 510310091 5.290000e-65 259.0
21 TraesCS4A01G007600 chr1A 90.909 132 12 0 3718 3849 259050637 259050768 1.520000e-40 178.0
22 TraesCS4A01G007600 chr7A 93.875 1453 74 10 1774 3220 48653215 48651772 0.000000e+00 2176.0
23 TraesCS4A01G007600 chr4B 88.502 1635 94 36 3449 5041 582826724 582825142 0.000000e+00 1892.0
24 TraesCS4A01G007600 chr4B 89.711 865 40 24 925 1773 582827547 582826716 0.000000e+00 1059.0
25 TraesCS4A01G007600 chr4B 86.526 616 61 10 4476 5077 595269384 595269991 0.000000e+00 658.0
26 TraesCS4A01G007600 chr4B 92.500 240 14 4 5081 5318 595270119 595270356 1.840000e-89 340.0
27 TraesCS4A01G007600 chrUn 94.816 926 27 4 1 925 71599423 71598518 0.000000e+00 1424.0
28 TraesCS4A01G007600 chr4D 89.510 1144 49 17 3683 4787 465760018 465758907 0.000000e+00 1382.0
29 TraesCS4A01G007600 chr4D 92.462 650 31 8 1128 1773 465760907 465760272 0.000000e+00 913.0
30 TraesCS4A01G007600 chr4D 95.888 535 17 3 4791 5321 465758780 465758247 0.000000e+00 861.0
31 TraesCS4A01G007600 chr4D 89.749 478 40 6 451 924 127926568 127927040 2.120000e-168 603.0
32 TraesCS4A01G007600 chr4D 90.671 343 21 4 4474 4809 472923435 472923773 3.780000e-121 446.0
33 TraesCS4A01G007600 chr4D 92.308 247 17 2 5073 5318 472923971 472924216 3.050000e-92 350.0
34 TraesCS4A01G007600 chr3D 86.452 930 86 24 1 924 614588714 614589609 0.000000e+00 983.0
35 TraesCS4A01G007600 chr7B 92.118 609 38 4 1 608 137457130 137456531 0.000000e+00 850.0
36 TraesCS4A01G007600 chr7B 91.843 331 25 2 599 927 137455584 137455254 1.350000e-125 460.0
37 TraesCS4A01G007600 chr7B 92.529 174 13 0 3273 3446 735979691 735979518 3.180000e-62 250.0
38 TraesCS4A01G007600 chr1D 86.780 295 34 4 1153 1442 204024059 204024353 1.850000e-84 324.0
39 TraesCS4A01G007600 chr1D 90.909 132 12 0 3718 3849 204027454 204027585 1.520000e-40 178.0
40 TraesCS4A01G007600 chr1B 85.763 295 37 4 1153 1442 299438023 299438317 1.860000e-79 307.0
41 TraesCS4A01G007600 chr1B 91.406 128 11 0 3718 3845 299439599 299439726 5.480000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G007600 chr4A 4816931 4822251 5320 False 9827.0 9827 100.0000 1 5321 1 chr4A.!!$F1 5320
1 TraesCS4A01G007600 chr4A 640993923 640995438 1515 False 2278.0 2278 93.8200 1766 3280 1 chr4A.!!$F2 1514
2 TraesCS4A01G007600 chr4A 684918484 684920193 1709 True 1361.5 2444 95.9745 1780 3451 2 chr4A.!!$R1 1671
3 TraesCS4A01G007600 chr3A 702934327 702936030 1703 False 2447.0 2447 92.7490 1757 3446 1 chr3A.!!$F2 1689
4 TraesCS4A01G007600 chr6A 577871264 577872973 1709 False 1362.5 2433 96.7085 1774 3446 2 chr6A.!!$F1 1672
5 TraesCS4A01G007600 chr2A 161823191 161824896 1705 False 1315.5 2368 94.8745 1774 3446 2 chr2A.!!$F1 1672
6 TraesCS4A01G007600 chr5A 596575566 596577111 1545 True 2353.0 2353 94.2800 1744 3280 1 chr5A.!!$R2 1536
7 TraesCS4A01G007600 chr5A 467052944 467054541 1597 False 2329.0 2329 93.0750 1765 3355 1 chr5A.!!$F2 1590
8 TraesCS4A01G007600 chr1A 510310091 510311802 1711 True 1280.5 2302 93.9460 1774 3452 2 chr1A.!!$R2 1678
9 TraesCS4A01G007600 chr1A 259049416 259050768 1352 False 253.5 329 89.0140 1153 3849 2 chr1A.!!$F1 2696
10 TraesCS4A01G007600 chr7A 48651772 48653215 1443 True 2176.0 2176 93.8750 1774 3220 1 chr7A.!!$R1 1446
11 TraesCS4A01G007600 chr4B 582825142 582827547 2405 True 1475.5 1892 89.1065 925 5041 2 chr4B.!!$R1 4116
12 TraesCS4A01G007600 chr4B 595269384 595270356 972 False 499.0 658 89.5130 4476 5318 2 chr4B.!!$F1 842
13 TraesCS4A01G007600 chrUn 71598518 71599423 905 True 1424.0 1424 94.8160 1 925 1 chrUn.!!$R1 924
14 TraesCS4A01G007600 chr4D 465758247 465760907 2660 True 1052.0 1382 92.6200 1128 5321 3 chr4D.!!$R1 4193
15 TraesCS4A01G007600 chr4D 472923435 472924216 781 False 398.0 446 91.4895 4474 5318 2 chr4D.!!$F2 844
16 TraesCS4A01G007600 chr3D 614588714 614589609 895 False 983.0 983 86.4520 1 924 1 chr3D.!!$F1 923
17 TraesCS4A01G007600 chr7B 137455254 137457130 1876 True 655.0 850 91.9805 1 927 2 chr7B.!!$R2 926
18 TraesCS4A01G007600 chr1D 204024059 204027585 3526 False 251.0 324 88.8445 1153 3849 2 chr1D.!!$F1 2696
19 TraesCS4A01G007600 chr1B 299438023 299439726 1703 False 241.5 307 88.5845 1153 3845 2 chr1B.!!$F1 2692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 1595 0.037326 CAGTCCGCAGCTTCCAACTA 60.037 55.000 0.00 0.0 0.00 2.24 F
918 1881 0.103208 AGCTCGGCTCAATTACTCCG 59.897 55.000 5.40 5.4 42.96 4.63 F
919 1882 0.179108 GCTCGGCTCAATTACTCCGT 60.179 55.000 10.07 0.0 42.28 4.69 F
1060 2031 0.741221 GCCAGTTCACTCCCATCGTC 60.741 60.000 0.00 0.0 0.00 4.20 F
1061 2032 0.898320 CCAGTTCACTCCCATCGTCT 59.102 55.000 0.00 0.0 0.00 4.18 F
1075 2046 1.139947 CGTCTCTCCCTTCCTTCGC 59.860 63.158 0.00 0.0 0.00 4.70 F
1399 2373 1.228831 TTCCGGTCCTACAACCCGA 60.229 57.895 0.00 0.0 44.41 5.14 F
3202 6955 0.916086 TGTCACAGGTGAGGTGGTTT 59.084 50.000 1.66 0.0 40.75 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 6190 1.174783 AAGACATACACTCGCCTCGT 58.825 50.000 0.00 0.00 0.00 4.18 R
2788 6531 2.363795 CACGGTAGCTCCTCCCCA 60.364 66.667 0.00 0.00 0.00 4.96 R
2892 6642 3.247442 GGTAATATACGCAGCGCACATA 58.753 45.455 16.61 10.61 0.00 2.29 R
3117 6870 9.889128 ATGTTTTTGCCTTTAATATGTTAGCAT 57.111 25.926 0.00 0.00 39.03 3.79 R
3176 6929 3.006859 CACCTCACCTGTGACACTGATTA 59.993 47.826 13.56 0.00 35.74 1.75 R
3188 6941 1.318576 GGAACAAACCACCTCACCTG 58.681 55.000 0.00 0.00 0.00 4.00 R
3395 7190 1.285641 CGAAATTGCCACACGCCTT 59.714 52.632 0.00 0.00 36.24 4.35 R
4854 8948 2.354704 CCCTCAATCAAGTGACGGCTAA 60.355 50.000 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.163211 GAGAGCAAATCAGCCTCCAAAC 59.837 50.000 0.00 0.00 34.23 2.93
97 98 8.777413 GCAGACACATATAGCATGAATTTTCTA 58.223 33.333 0.00 0.00 0.00 2.10
247 249 2.565841 GGGATTCATCTTCTCCGTTGG 58.434 52.381 0.00 0.00 0.00 3.77
323 325 3.504863 GAACTAGATTTGTACGTCGCCA 58.495 45.455 0.00 0.00 0.00 5.69
450 456 3.636679 CTCCTCAAGGACACTGGATCTA 58.363 50.000 0.00 0.00 39.78 1.98
451 457 4.222336 CTCCTCAAGGACACTGGATCTAT 58.778 47.826 0.00 0.00 39.78 1.98
452 458 4.219115 TCCTCAAGGACACTGGATCTATC 58.781 47.826 0.00 0.00 39.78 2.08
453 459 4.078922 TCCTCAAGGACACTGGATCTATCT 60.079 45.833 0.00 0.00 39.78 1.98
462 468 7.050377 GGACACTGGATCTATCTGAAATTTGA 58.950 38.462 0.00 0.00 0.00 2.69
478 484 4.388499 GAGGGAAAGCCGTCCGCA 62.388 66.667 0.00 0.00 42.02 5.69
548 554 4.858850 TGGAGAAGCAAACATCCACATAT 58.141 39.130 0.00 0.00 36.92 1.78
633 1595 0.037326 CAGTCCGCAGCTTCCAACTA 60.037 55.000 0.00 0.00 0.00 2.24
709 1671 0.963962 ACTGGACGGAAAGCGAACTA 59.036 50.000 0.00 0.00 0.00 2.24
729 1692 2.885113 CGAGCCACGGATCAGACA 59.115 61.111 0.00 0.00 38.46 3.41
743 1706 4.098044 GGATCAGACAGAACGTGGATTCTA 59.902 45.833 0.00 0.00 36.78 2.10
820 1783 5.392380 CCGTACGTATTTCACTACAGGACTT 60.392 44.000 15.21 0.00 0.00 3.01
827 1790 8.504005 CGTATTTCACTACAGGACTTGATTTTT 58.496 33.333 0.00 0.00 0.00 1.94
848 1811 0.446222 GGCACGCGCATAGAAAAAGA 59.554 50.000 5.73 0.00 41.24 2.52
862 1825 5.407407 AGAAAAAGAGCACGGATCTCTAA 57.593 39.130 4.22 0.00 39.81 2.10
863 1826 5.794894 AGAAAAAGAGCACGGATCTCTAAA 58.205 37.500 4.22 0.00 39.81 1.85
864 1827 5.872070 AGAAAAAGAGCACGGATCTCTAAAG 59.128 40.000 4.22 0.00 39.81 1.85
865 1828 2.880963 AGAGCACGGATCTCTAAAGC 57.119 50.000 2.18 0.00 39.00 3.51
866 1829 1.066303 AGAGCACGGATCTCTAAAGCG 59.934 52.381 2.18 0.00 39.00 4.68
867 1830 0.528684 AGCACGGATCTCTAAAGCGC 60.529 55.000 0.00 0.00 0.00 5.92
868 1831 1.812214 GCACGGATCTCTAAAGCGCG 61.812 60.000 0.00 0.00 0.00 6.86
869 1832 0.525668 CACGGATCTCTAAAGCGCGT 60.526 55.000 8.43 0.00 0.00 6.01
870 1833 1.019673 ACGGATCTCTAAAGCGCGTA 58.980 50.000 8.43 0.00 0.00 4.42
871 1834 1.268437 ACGGATCTCTAAAGCGCGTAC 60.268 52.381 8.43 0.00 0.00 3.67
872 1835 1.768510 GGATCTCTAAAGCGCGTACC 58.231 55.000 8.43 0.00 0.00 3.34
873 1836 1.066605 GGATCTCTAAAGCGCGTACCA 59.933 52.381 8.43 0.00 0.00 3.25
874 1837 2.480759 GGATCTCTAAAGCGCGTACCAA 60.481 50.000 8.43 0.00 0.00 3.67
875 1838 1.986698 TCTCTAAAGCGCGTACCAAC 58.013 50.000 8.43 0.00 0.00 3.77
888 1851 2.190981 GTACCAACGACCAAGATAGCG 58.809 52.381 0.00 0.00 0.00 4.26
889 1852 0.108329 ACCAACGACCAAGATAGCGG 60.108 55.000 0.00 0.00 0.00 5.52
890 1853 0.810031 CCAACGACCAAGATAGCGGG 60.810 60.000 0.00 0.00 0.00 6.13
891 1854 1.153429 AACGACCAAGATAGCGGGC 60.153 57.895 0.00 0.00 0.00 6.13
892 1855 1.614241 AACGACCAAGATAGCGGGCT 61.614 55.000 0.00 0.00 0.00 5.19
893 1856 1.300233 CGACCAAGATAGCGGGCTC 60.300 63.158 0.00 0.00 0.00 4.70
894 1857 1.823295 GACCAAGATAGCGGGCTCA 59.177 57.895 0.00 0.00 0.00 4.26
895 1858 0.394565 GACCAAGATAGCGGGCTCAT 59.605 55.000 0.00 0.00 0.00 2.90
896 1859 0.394565 ACCAAGATAGCGGGCTCATC 59.605 55.000 0.00 0.00 0.00 2.92
897 1860 0.683973 CCAAGATAGCGGGCTCATCT 59.316 55.000 0.00 2.07 0.00 2.90
898 1861 1.607509 CCAAGATAGCGGGCTCATCTG 60.608 57.143 0.00 0.00 0.00 2.90
899 1862 1.342496 CAAGATAGCGGGCTCATCTGA 59.658 52.381 0.00 0.00 0.00 3.27
900 1863 1.255882 AGATAGCGGGCTCATCTGAG 58.744 55.000 0.00 2.75 44.75 3.35
918 1881 0.103208 AGCTCGGCTCAATTACTCCG 59.897 55.000 5.40 5.40 42.96 4.63
919 1882 0.179108 GCTCGGCTCAATTACTCCGT 60.179 55.000 10.07 0.00 42.28 4.69
920 1883 1.560923 CTCGGCTCAATTACTCCGTG 58.439 55.000 10.07 5.59 42.28 4.94
921 1884 0.892755 TCGGCTCAATTACTCCGTGT 59.107 50.000 10.07 0.00 42.28 4.49
922 1885 1.135199 TCGGCTCAATTACTCCGTGTC 60.135 52.381 10.07 0.00 42.28 3.67
923 1886 1.653151 GGCTCAATTACTCCGTGTCC 58.347 55.000 0.00 0.00 0.00 4.02
1013 1984 2.594592 GCCCATGGTGTATCCGGC 60.595 66.667 11.73 0.00 39.52 6.13
1058 2029 1.450312 GGCCAGTTCACTCCCATCG 60.450 63.158 0.00 0.00 0.00 3.84
1059 2030 1.296715 GCCAGTTCACTCCCATCGT 59.703 57.895 0.00 0.00 0.00 3.73
1060 2031 0.741221 GCCAGTTCACTCCCATCGTC 60.741 60.000 0.00 0.00 0.00 4.20
1061 2032 0.898320 CCAGTTCACTCCCATCGTCT 59.102 55.000 0.00 0.00 0.00 4.18
1075 2046 1.139947 CGTCTCTCCCTTCCTTCGC 59.860 63.158 0.00 0.00 0.00 4.70
1078 2049 1.990060 CTCTCCCTTCCTTCGCCCA 60.990 63.158 0.00 0.00 0.00 5.36
1079 2050 2.245438 CTCTCCCTTCCTTCGCCCAC 62.245 65.000 0.00 0.00 0.00 4.61
1104 2075 2.732619 CCCACTCCTACGCTTCCCC 61.733 68.421 0.00 0.00 0.00 4.81
1105 2076 2.494918 CACTCCTACGCTTCCCCG 59.505 66.667 0.00 0.00 0.00 5.73
1108 2079 4.772231 TCCTACGCTTCCCCGCCT 62.772 66.667 0.00 0.00 0.00 5.52
1109 2080 4.222847 CCTACGCTTCCCCGCCTC 62.223 72.222 0.00 0.00 0.00 4.70
1110 2081 4.570663 CTACGCTTCCCCGCCTCG 62.571 72.222 0.00 0.00 0.00 4.63
1266 2240 1.298667 GGGGCTCACCAACGTGTAT 59.701 57.895 0.00 0.00 42.91 2.29
1399 2373 1.228831 TTCCGGTCCTACAACCCGA 60.229 57.895 0.00 0.00 44.41 5.14
1473 3406 5.427036 TTTTTCAGTACAAGTTTAGCCCG 57.573 39.130 0.00 0.00 0.00 6.13
1474 3407 3.756933 TTCAGTACAAGTTTAGCCCGT 57.243 42.857 0.00 0.00 0.00 5.28
1475 3408 3.034721 TCAGTACAAGTTTAGCCCGTG 57.965 47.619 0.00 0.00 0.00 4.94
1476 3409 2.629137 TCAGTACAAGTTTAGCCCGTGA 59.371 45.455 0.00 0.00 0.00 4.35
1477 3410 3.259876 TCAGTACAAGTTTAGCCCGTGAT 59.740 43.478 0.00 0.00 0.00 3.06
1498 3431 9.964253 CGTGATTGATATGATAAAGCAAGATAC 57.036 33.333 0.00 0.00 0.00 2.24
1555 3526 4.559153 CTGGATTGTGTCAAATGGGAAAC 58.441 43.478 0.00 0.00 0.00 2.78
1628 5237 5.255397 TCCTCACTGGTTATTTCATGGTT 57.745 39.130 0.00 0.00 37.07 3.67
1629 5238 5.640147 TCCTCACTGGTTATTTCATGGTTT 58.360 37.500 0.00 0.00 37.07 3.27
1630 5239 6.785076 TCCTCACTGGTTATTTCATGGTTTA 58.215 36.000 0.00 0.00 37.07 2.01
1631 5240 6.657541 TCCTCACTGGTTATTTCATGGTTTAC 59.342 38.462 0.00 0.00 37.07 2.01
1632 5241 6.432783 CCTCACTGGTTATTTCATGGTTTACA 59.567 38.462 0.00 0.00 0.00 2.41
1633 5242 7.209471 TCACTGGTTATTTCATGGTTTACAC 57.791 36.000 0.00 0.00 0.00 2.90
1694 5434 3.380637 AGAGCATCAAGGCAATCATCAAC 59.619 43.478 0.00 0.00 37.82 3.18
1730 5470 5.817296 TGATGGAATGTAAGAAGATTCACCG 59.183 40.000 0.00 0.00 37.17 4.94
1819 5560 5.418524 TGTGCCATATAAGCAAAACTGTCAT 59.581 36.000 2.62 0.00 43.02 3.06
2031 5772 9.457436 TGATATTCATATGCAAGTTATCATGCT 57.543 29.630 0.00 0.00 42.97 3.79
2040 5781 4.548494 CAAGTTATCATGCTTGTGTTGCA 58.452 39.130 0.00 0.00 44.95 4.08
2116 5857 2.105821 CACCCCTTCAAAGTCACCACTA 59.894 50.000 0.00 0.00 30.14 2.74
2204 5945 7.633018 ATCAGGGTATATGTACATCAACCTT 57.367 36.000 26.63 21.13 32.25 3.50
2205 5946 7.446106 TCAGGGTATATGTACATCAACCTTT 57.554 36.000 26.63 17.85 32.25 3.11
2241 5982 2.584965 ACCATGGGGGATTGTACATGAA 59.415 45.455 18.09 0.00 42.39 2.57
2247 5988 4.230733 TGGGGGATTGTACATGAATTACCA 59.769 41.667 0.00 0.00 0.00 3.25
2306 6047 2.774439 AAATCTGTGTGTGTTTCGGC 57.226 45.000 0.00 0.00 0.00 5.54
2370 6111 6.735145 GCGTAACTTATCACACCTATAGCACT 60.735 42.308 0.00 0.00 0.00 4.40
2449 6190 3.329889 ATCCAAGAGGCCCACGCA 61.330 61.111 0.00 0.00 36.38 5.24
2550 6292 6.167685 TCGGTTATGCGGTGCTTATATTATT 58.832 36.000 0.00 0.00 0.00 1.40
2660 6403 4.632688 TCAAGCCCGTAGTGCTTAAAATAC 59.367 41.667 0.00 0.00 46.85 1.89
2788 6531 8.694540 TCATGCTATTTACACATAAAAATGCCT 58.305 29.630 0.00 0.00 33.98 4.75
2796 6539 2.314549 ACATAAAAATGCCTGGGGAGGA 59.685 45.455 0.00 0.00 0.00 3.71
2797 6540 2.826674 TAAAAATGCCTGGGGAGGAG 57.173 50.000 0.00 0.00 0.00 3.69
2826 6575 6.923508 CCGTGCTATTTACACAGAAGATATCA 59.076 38.462 5.32 0.00 37.93 2.15
2892 6642 6.407202 GTGGTGTTTCTACCTCAGTTATCAT 58.593 40.000 0.00 0.00 41.43 2.45
3176 6929 9.700831 AATAGTATTTCCCTTAGCTTGTTCAAT 57.299 29.630 0.00 0.00 0.00 2.57
3188 6941 6.246420 AGCTTGTTCAATAATCAGTGTCAC 57.754 37.500 0.00 0.00 0.00 3.67
3202 6955 0.916086 TGTCACAGGTGAGGTGGTTT 59.084 50.000 1.66 0.00 40.75 3.27
3209 6962 1.170290 GGTGAGGTGGTTTGTTCCCG 61.170 60.000 0.00 0.00 0.00 5.14
3229 6982 3.938963 CCGTTGTTGATTACCTGCATACT 59.061 43.478 0.00 0.00 0.00 2.12
3355 7149 4.079253 CAGGAAAGGAAAGAAATCGGGAA 58.921 43.478 0.00 0.00 0.00 3.97
3395 7190 1.497161 GGGAAAGGAAGGAGATCGGA 58.503 55.000 0.00 0.00 0.00 4.55
3446 7241 6.734137 CACACGGTTGCCATATACATATTTT 58.266 36.000 0.00 0.00 0.00 1.82
3560 7362 8.048534 TCAGATGATTTGGATTCTTTCAAGAC 57.951 34.615 0.00 0.00 34.13 3.01
3573 7376 6.949578 TCTTTCAAGACTTTGCTTTGTTTG 57.050 33.333 0.00 0.00 34.21 2.93
3582 7385 6.826741 AGACTTTGCTTTGTTTGTAGAACCTA 59.173 34.615 0.00 0.00 0.00 3.08
3633 7476 7.215789 TGTGCACAATTCTAAATCCAAATGTT 58.784 30.769 19.28 0.00 0.00 2.71
3637 7480 8.330302 GCACAATTCTAAATCCAAATGTTATGC 58.670 33.333 0.00 0.00 0.00 3.14
3669 7512 5.116983 CGTGGAACTTTGTTGCATAATCAAC 59.883 40.000 7.80 0.14 40.00 3.18
3676 7519 6.922957 ACTTTGTTGCATAATCAACGAAATGT 59.077 30.769 9.67 4.21 46.85 2.71
3849 7769 6.371809 TCACACTGAACAGGTTTGTAATTC 57.628 37.500 6.76 0.00 36.23 2.17
3857 7777 5.061721 ACAGGTTTGTAATTCCTTCAGGT 57.938 39.130 0.00 0.00 35.25 4.00
3895 7815 5.945784 TCTCTGTTCCTGATAACCCATTTTG 59.054 40.000 0.00 0.00 0.00 2.44
3896 7816 4.462483 TCTGTTCCTGATAACCCATTTTGC 59.538 41.667 0.00 0.00 0.00 3.68
3897 7817 4.155709 TGTTCCTGATAACCCATTTTGCA 58.844 39.130 0.00 0.00 0.00 4.08
3898 7818 4.776837 TGTTCCTGATAACCCATTTTGCAT 59.223 37.500 0.00 0.00 0.00 3.96
3899 7819 5.105392 TGTTCCTGATAACCCATTTTGCATC 60.105 40.000 0.00 0.00 0.00 3.91
3904 7824 4.715792 TGATAACCCATTTTGCATCCATGT 59.284 37.500 0.00 0.00 0.00 3.21
3905 7825 3.337694 AACCCATTTTGCATCCATGTG 57.662 42.857 0.00 0.00 0.00 3.21
3911 7831 5.509501 CCCATTTTGCATCCATGTGTATACC 60.510 44.000 0.00 0.00 0.00 2.73
3915 7835 4.350368 TGCATCCATGTGTATACCGAAT 57.650 40.909 0.00 0.00 0.00 3.34
3916 7836 4.064388 TGCATCCATGTGTATACCGAATG 58.936 43.478 0.00 1.95 0.00 2.67
3923 7843 3.183754 TGTGTATACCGAATGAAGTGCG 58.816 45.455 0.00 0.00 0.00 5.34
3943 7863 2.286294 CGATTTCGGAGCCAAGATTCAG 59.714 50.000 0.00 0.00 35.37 3.02
3952 7872 3.022406 AGCCAAGATTCAGCCAAATCTC 58.978 45.455 10.64 1.31 43.53 2.75
3981 7918 5.335661 CCATTGTAGTTAAAACACCCTGAGC 60.336 44.000 0.00 0.00 0.00 4.26
4077 8032 4.589216 TTTAATTGCTTCAAGTGCTGCT 57.411 36.364 0.00 0.00 0.00 4.24
4105 8063 6.228258 TCCTAGTTCCTACAATTTGTCACAC 58.772 40.000 5.07 0.00 0.00 3.82
4193 8154 7.944729 ATTCAAGCAGTTGTCCTATGTTTAT 57.055 32.000 0.00 0.00 34.98 1.40
4342 8303 6.314917 TGAGATAATGAGATGGCTGGTACTA 58.685 40.000 0.00 0.00 0.00 1.82
4443 8404 7.824289 TCTGAATGATCGACCAAATAAAGAGTT 59.176 33.333 0.00 0.00 0.00 3.01
4500 8461 2.470983 TGGAACAGCATTCGACATGA 57.529 45.000 0.00 0.00 0.00 3.07
4600 8561 7.275920 AGAGTAACTCAGCATGGTTTTATAGG 58.724 38.462 0.00 0.00 36.16 2.57
4608 8569 5.069516 CAGCATGGTTTTATAGGCTGGATTT 59.930 40.000 0.00 0.00 43.62 2.17
4953 9050 6.629128 TGACAGATTCTGTGATCTCTCTTTC 58.371 40.000 23.57 5.55 45.44 2.62
5208 9439 5.769662 TGGTTAGCAACTCAAACTTGATGAT 59.230 36.000 0.00 0.00 36.46 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.522405 TGTATTGCACCTATGTTTGCTTGT 59.478 37.500 0.00 0.00 39.62 3.16
69 70 3.030668 TCATGCTATATGTGTCTGCGG 57.969 47.619 0.00 0.00 0.00 5.69
450 456 3.445096 CGGCTTTCCCTCAAATTTCAGAT 59.555 43.478 0.00 0.00 0.00 2.90
451 457 2.819608 CGGCTTTCCCTCAAATTTCAGA 59.180 45.455 0.00 0.00 0.00 3.27
452 458 2.558359 ACGGCTTTCCCTCAAATTTCAG 59.442 45.455 0.00 0.00 0.00 3.02
453 459 2.556622 GACGGCTTTCCCTCAAATTTCA 59.443 45.455 0.00 0.00 0.00 2.69
462 468 4.394712 CTGCGGACGGCTTTCCCT 62.395 66.667 6.55 0.00 44.05 4.20
478 484 3.054139 TGCATTCTGGTTTAGCTGATCCT 60.054 43.478 7.10 0.00 0.00 3.24
510 516 0.622136 TCCAGTGATGCTGCCTTCAT 59.378 50.000 0.00 0.00 43.71 2.57
513 519 0.694771 TTCTCCAGTGATGCTGCCTT 59.305 50.000 0.00 0.00 43.71 4.35
633 1595 1.303317 CTTGGCTAGGGCGTGGTTT 60.303 57.895 0.00 0.00 39.81 3.27
729 1692 1.134560 GCGGACTAGAATCCACGTTCT 59.865 52.381 0.00 0.00 41.18 3.01
776 1739 2.289444 GGATCTGACGAAAGGTTGGACA 60.289 50.000 0.00 0.00 0.00 4.02
827 1790 0.593618 TTTTTCTATGCGCGTGCCAA 59.406 45.000 19.87 5.26 41.78 4.52
848 1811 0.528684 GCGCTTTAGAGATCCGTGCT 60.529 55.000 0.00 0.00 0.00 4.40
868 1831 2.190981 CGCTATCTTGGTCGTTGGTAC 58.809 52.381 0.00 0.00 0.00 3.34
869 1832 1.135527 CCGCTATCTTGGTCGTTGGTA 59.864 52.381 0.00 0.00 0.00 3.25
870 1833 0.108329 CCGCTATCTTGGTCGTTGGT 60.108 55.000 0.00 0.00 0.00 3.67
871 1834 0.810031 CCCGCTATCTTGGTCGTTGG 60.810 60.000 0.00 0.00 0.00 3.77
872 1835 1.429148 GCCCGCTATCTTGGTCGTTG 61.429 60.000 0.00 0.00 0.00 4.10
873 1836 1.153429 GCCCGCTATCTTGGTCGTT 60.153 57.895 0.00 0.00 0.00 3.85
874 1837 2.017559 GAGCCCGCTATCTTGGTCGT 62.018 60.000 0.00 0.00 0.00 4.34
875 1838 1.300233 GAGCCCGCTATCTTGGTCG 60.300 63.158 0.00 0.00 0.00 4.79
876 1839 0.394565 ATGAGCCCGCTATCTTGGTC 59.605 55.000 0.00 0.00 0.00 4.02
877 1840 0.394565 GATGAGCCCGCTATCTTGGT 59.605 55.000 0.00 0.00 0.00 3.67
878 1841 0.683973 AGATGAGCCCGCTATCTTGG 59.316 55.000 0.00 0.00 0.00 3.61
879 1842 1.342496 TCAGATGAGCCCGCTATCTTG 59.658 52.381 0.00 0.00 0.00 3.02
880 1843 1.617850 CTCAGATGAGCCCGCTATCTT 59.382 52.381 0.00 0.00 35.13 2.40
881 1844 1.255882 CTCAGATGAGCCCGCTATCT 58.744 55.000 0.00 0.00 35.13 1.98
882 1845 3.810579 CTCAGATGAGCCCGCTATC 57.189 57.895 0.00 0.00 35.13 2.08
899 1862 0.103208 CGGAGTAATTGAGCCGAGCT 59.897 55.000 8.46 0.00 46.29 4.09
900 1863 0.179108 ACGGAGTAATTGAGCCGAGC 60.179 55.000 17.72 0.00 46.29 5.03
901 1864 1.135083 ACACGGAGTAATTGAGCCGAG 60.135 52.381 17.72 13.40 46.29 4.63
902 1865 0.892755 ACACGGAGTAATTGAGCCGA 59.107 50.000 17.72 0.00 46.29 5.54
904 1867 1.653151 GGACACGGAGTAATTGAGCC 58.347 55.000 0.00 0.00 41.61 4.70
905 1868 1.653151 GGGACACGGAGTAATTGAGC 58.347 55.000 0.00 0.00 41.61 4.26
906 1869 1.470979 CGGGGACACGGAGTAATTGAG 60.471 57.143 0.00 0.00 41.61 3.02
907 1870 0.533491 CGGGGACACGGAGTAATTGA 59.467 55.000 0.00 0.00 41.61 2.57
908 1871 1.087771 GCGGGGACACGGAGTAATTG 61.088 60.000 0.00 0.00 41.61 2.32
909 1872 1.219935 GCGGGGACACGGAGTAATT 59.780 57.895 0.00 0.00 41.61 1.40
910 1873 2.897972 GCGGGGACACGGAGTAAT 59.102 61.111 0.00 0.00 41.61 1.89
911 1874 3.751246 CGCGGGGACACGGAGTAA 61.751 66.667 0.00 0.00 41.61 2.24
933 1896 4.250305 GTGTCGGCAGTGGGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
938 1901 1.966451 GGGAAAGTGTCGGCAGTGG 60.966 63.158 0.00 0.00 0.00 4.00
991 1954 1.181098 GGATACACCATGGGCCATGC 61.181 60.000 35.99 22.59 40.20 4.06
996 1959 2.594592 GCCGGATACACCATGGGC 60.595 66.667 18.09 2.85 38.90 5.36
999 1970 3.337889 CGCGCCGGATACACCATG 61.338 66.667 5.05 0.00 38.90 3.66
1032 2003 4.278513 TGAACTGGCCCCGGTTGG 62.279 66.667 15.88 0.00 44.62 3.77
1058 2029 1.518302 GGCGAAGGAAGGGAGAGAC 59.482 63.158 0.00 0.00 0.00 3.36
1059 2030 1.686110 GGGCGAAGGAAGGGAGAGA 60.686 63.158 0.00 0.00 0.00 3.10
1060 2031 1.990060 TGGGCGAAGGAAGGGAGAG 60.990 63.158 0.00 0.00 0.00 3.20
1061 2032 2.121832 TGGGCGAAGGAAGGGAGA 59.878 61.111 0.00 0.00 0.00 3.71
1075 2046 2.348998 GAGTGGGAGTGCAGTGGG 59.651 66.667 0.00 0.00 0.00 4.61
1078 2049 1.251527 CGTAGGAGTGGGAGTGCAGT 61.252 60.000 0.00 0.00 0.00 4.40
1079 2050 1.513158 CGTAGGAGTGGGAGTGCAG 59.487 63.158 0.00 0.00 0.00 4.41
1104 2075 3.038417 GGAATGGCGATCGAGGCG 61.038 66.667 21.57 6.14 39.82 5.52
1105 2076 3.038417 CGGAATGGCGATCGAGGC 61.038 66.667 21.57 2.85 37.19 4.70
1108 2079 2.025584 CGACGGAATGGCGATCGA 59.974 61.111 21.57 0.00 34.77 3.59
1109 2080 2.011349 CTCGACGGAATGGCGATCG 61.011 63.158 11.69 11.69 33.20 3.69
1110 2081 2.303676 GCTCGACGGAATGGCGATC 61.304 63.158 0.00 0.00 33.20 3.69
1111 2082 2.279517 GCTCGACGGAATGGCGAT 60.280 61.111 0.00 0.00 33.20 4.58
1179 2150 2.816958 ATCAGCTTCTGCACCGCG 60.817 61.111 0.00 0.00 42.74 6.46
1353 2327 0.103755 GCATCATGAGCTCCACGAGA 59.896 55.000 12.15 2.23 0.00 4.04
1399 2373 1.674322 CGGGCTCGTGGACCATTTT 60.674 57.895 0.00 0.00 45.62 1.82
1464 3397 7.667043 TTATCATATCAATCACGGGCTAAAC 57.333 36.000 0.00 0.00 0.00 2.01
1477 3410 9.851686 AGTTGGTATCTTGCTTTATCATATCAA 57.148 29.630 0.00 0.00 0.00 2.57
1555 3526 1.586422 ACATAGTAGCATTGCGGCAG 58.414 50.000 1.67 0.00 35.83 4.85
1628 5237 5.912892 TCATTCAGTCTGTGTTCAGTGTAA 58.087 37.500 0.00 0.00 41.91 2.41
1629 5238 5.529581 TCATTCAGTCTGTGTTCAGTGTA 57.470 39.130 0.00 0.00 41.91 2.90
1630 5239 4.406648 TCATTCAGTCTGTGTTCAGTGT 57.593 40.909 0.00 0.00 41.91 3.55
1631 5240 4.319333 GCTTCATTCAGTCTGTGTTCAGTG 60.319 45.833 0.00 0.00 41.91 3.66
1632 5241 3.812053 GCTTCATTCAGTCTGTGTTCAGT 59.188 43.478 0.00 0.00 41.91 3.41
1633 5242 4.063689 AGCTTCATTCAGTCTGTGTTCAG 58.936 43.478 0.00 0.00 42.54 3.02
1694 5434 2.472695 TTCCATCACCAAAGTCCTCG 57.527 50.000 0.00 0.00 0.00 4.63
2031 5772 9.456147 AATAGTATGGTAAGTTATGCAACACAA 57.544 29.630 0.00 0.00 37.10 3.33
2241 5982 8.474710 AATATACGAACTGTAGACCTGGTAAT 57.525 34.615 0.00 0.00 36.25 1.89
2247 5988 9.298250 ACATGATAATATACGAACTGTAGACCT 57.702 33.333 0.00 0.00 36.25 3.85
2306 6047 7.910441 AATTTTTGACCTATGGAAAATGCTG 57.090 32.000 0.00 0.00 33.41 4.41
2370 6111 1.357137 TAGTGTCATGAGGGGCACAA 58.643 50.000 14.50 0.00 34.59 3.33
2449 6190 1.174783 AAGACATACACTCGCCTCGT 58.825 50.000 0.00 0.00 0.00 4.18
2788 6531 2.363795 CACGGTAGCTCCTCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
2797 6540 3.777478 TCTGTGTAAATAGCACGGTAGC 58.223 45.455 0.00 0.00 42.23 3.58
2868 6618 5.790593 TGATAACTGAGGTAGAAACACCAC 58.209 41.667 0.00 0.00 41.40 4.16
2892 6642 3.247442 GGTAATATACGCAGCGCACATA 58.753 45.455 16.61 10.61 0.00 2.29
3117 6870 9.889128 ATGTTTTTGCCTTTAATATGTTAGCAT 57.111 25.926 0.00 0.00 39.03 3.79
3176 6929 3.006859 CACCTCACCTGTGACACTGATTA 59.993 47.826 13.56 0.00 35.74 1.75
3188 6941 1.318576 GGAACAAACCACCTCACCTG 58.681 55.000 0.00 0.00 0.00 4.00
3202 6955 3.142951 CAGGTAATCAACAACGGGAACA 58.857 45.455 0.00 0.00 0.00 3.18
3209 6962 7.265673 TCTCTAGTATGCAGGTAATCAACAAC 58.734 38.462 0.00 0.00 0.00 3.32
3229 6982 5.899547 TGCTTGGACTAGGATTTGATCTCTA 59.100 40.000 0.00 0.00 0.00 2.43
3355 7149 4.444081 CGTCCTCCCCGACCTCCT 62.444 72.222 0.00 0.00 0.00 3.69
3395 7190 1.285641 CGAAATTGCCACACGCCTT 59.714 52.632 0.00 0.00 36.24 4.35
3452 7247 6.429692 ACAACCAATGATTTGTCTCGTATCAA 59.570 34.615 0.00 0.00 29.75 2.57
3453 7248 5.937540 ACAACCAATGATTTGTCTCGTATCA 59.062 36.000 0.00 0.00 29.75 2.15
3454 7249 6.422776 ACAACCAATGATTTGTCTCGTATC 57.577 37.500 0.00 0.00 29.75 2.24
3455 7250 6.422776 GACAACCAATGATTTGTCTCGTAT 57.577 37.500 15.81 0.00 45.45 3.06
3456 7251 5.856126 GACAACCAATGATTTGTCTCGTA 57.144 39.130 15.81 0.00 45.45 3.43
3457 7252 4.749245 GACAACCAATGATTTGTCTCGT 57.251 40.909 15.81 0.00 45.45 4.18
3508 7303 6.844097 TCCAAGTTGTTAAGTTTCAGGTTT 57.156 33.333 1.45 0.00 0.00 3.27
3509 7304 6.844097 TTCCAAGTTGTTAAGTTTCAGGTT 57.156 33.333 1.45 0.00 0.00 3.50
3560 7362 8.871686 ATTTAGGTTCTACAAACAAAGCAAAG 57.128 30.769 0.00 0.00 0.00 2.77
3598 7401 4.077108 AGAATTGTGCACATGTGAGACAT 58.923 39.130 29.80 15.37 39.91 3.06
3633 7476 3.627395 AGTTCCACGGAAATGAGCATA 57.373 42.857 0.00 0.00 35.75 3.14
3637 7480 4.290155 CAACAAAGTTCCACGGAAATGAG 58.710 43.478 0.00 0.00 35.75 2.90
3669 7512 8.446489 TGCAAGTGTTATTATTTGACATTTCG 57.554 30.769 0.00 0.00 0.00 3.46
3849 7769 5.130145 AGAATAGGATGAGAACACCTGAAGG 59.870 44.000 0.00 0.00 42.17 3.46
3857 7777 5.960811 AGGAACAGAGAATAGGATGAGAACA 59.039 40.000 0.00 0.00 0.00 3.18
3895 7815 4.314961 TCATTCGGTATACACATGGATGC 58.685 43.478 5.01 0.00 0.00 3.91
3896 7816 5.991606 ACTTCATTCGGTATACACATGGATG 59.008 40.000 5.01 2.43 0.00 3.51
3897 7817 5.991606 CACTTCATTCGGTATACACATGGAT 59.008 40.000 5.01 0.00 0.00 3.41
3898 7818 5.356426 CACTTCATTCGGTATACACATGGA 58.644 41.667 5.01 0.00 0.00 3.41
3899 7819 4.024893 GCACTTCATTCGGTATACACATGG 60.025 45.833 5.01 0.00 0.00 3.66
3904 7824 3.786516 TCGCACTTCATTCGGTATACA 57.213 42.857 5.01 0.00 0.00 2.29
3905 7825 5.609696 CGAAATCGCACTTCATTCGGTATAC 60.610 44.000 0.00 0.00 39.21 1.47
3911 7831 1.658596 TCCGAAATCGCACTTCATTCG 59.341 47.619 0.00 0.00 41.71 3.34
3915 7835 1.019278 GGCTCCGAAATCGCACTTCA 61.019 55.000 0.00 0.00 38.18 3.02
3916 7836 1.019278 TGGCTCCGAAATCGCACTTC 61.019 55.000 0.00 0.00 38.18 3.01
3923 7843 2.032675 GCTGAATCTTGGCTCCGAAATC 59.967 50.000 0.00 0.00 0.00 2.17
3943 7863 0.462789 CAATGGCCCTGAGATTTGGC 59.537 55.000 0.00 0.00 44.59 4.52
3952 7872 4.321675 GGTGTTTTAACTACAATGGCCCTG 60.322 45.833 0.00 0.00 0.00 4.45
3981 7918 6.806388 AAATTTTAGCAATTTCAAGCTGGG 57.194 33.333 0.00 0.00 41.97 4.45
4015 7952 5.953571 GGGGGTATGGACATCTTATCTTTT 58.046 41.667 0.00 0.00 0.00 2.27
4039 7976 7.042187 AGCAATTAAATAATCTCTCTGCACTCG 60.042 37.037 8.61 0.00 30.70 4.18
4047 7984 9.230932 GCACTTGAAGCAATTAAATAATCTCTC 57.769 33.333 0.00 0.00 0.00 3.20
4050 7987 7.490402 GCAGCACTTGAAGCAATTAAATAATCT 59.510 33.333 0.00 0.00 0.00 2.40
4077 8032 8.092687 GTGACAAATTGTAGGAACTAGGAACTA 58.907 37.037 0.00 0.00 44.14 2.24
4105 8063 7.589395 ACTAAGATTCGCTGATAGTCATACAG 58.411 38.462 0.00 0.00 35.14 2.74
4193 8154 2.441750 GGAGCATGGTAACCTTATGGGA 59.558 50.000 0.00 0.00 38.76 4.37
4342 8303 2.456733 AGCTACATATCCCCCTTCTCCT 59.543 50.000 0.00 0.00 0.00 3.69
4403 8364 7.121315 TCGATCATTCAGACTAGAAAAGAGACA 59.879 37.037 0.00 0.00 0.00 3.41
4407 8368 6.152831 TGGTCGATCATTCAGACTAGAAAAGA 59.847 38.462 0.00 0.00 35.42 2.52
4443 8404 9.696917 CAAGCAGACATTACATACTATATGACA 57.303 33.333 2.88 0.00 0.00 3.58
4472 8433 2.380064 ATGCTGTTCCAGGTCCAAAA 57.620 45.000 0.00 0.00 31.21 2.44
4500 8461 4.806247 GTCGATCATTCAGACGAGGAAAAT 59.194 41.667 0.00 0.00 32.97 1.82
4600 8561 6.018180 ACGGTTTATCTTATCGAAAATCCAGC 60.018 38.462 0.00 0.00 0.00 4.85
4608 8569 9.241317 GAATACAAGACGGTTTATCTTATCGAA 57.759 33.333 0.00 0.00 34.59 3.71
4854 8948 2.354704 CCCTCAATCAAGTGACGGCTAA 60.355 50.000 0.00 0.00 0.00 3.09
4953 9050 6.969828 ACTAGACGCAAAATCTCTTTTAGG 57.030 37.500 0.00 0.00 32.81 2.69
4994 9092 7.860613 TCAACGAACATGCATAGTATAAATGG 58.139 34.615 0.00 0.00 0.00 3.16
5051 9155 9.856162 TGTACTGTATTATACACCTGTATCTCA 57.144 33.333 0.29 0.00 41.18 3.27
5134 9365 7.120138 TGGCATTGACATGATGATATATCACAC 59.880 37.037 17.60 14.39 40.03 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.